TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161272.2.19
(1410 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT518564.1|DT518564 WS02438.B21_I18 PTxD-ICC-N-A-14 Popu... 56 3e-043
gb|DT512363.1|DT512363 WS02419.B21_B06 PTxD-ICC-N-A-14 Popu... 56 3e-043
gb|DT517819.1|DT517819 WS02435.B21_G10 PTxD-ICC-N-A-14 Popu... 56 3e-043
gb|CV257933.1|CV257933 WS0248.B21_A20 PTxD-ICC-N-A-14 Popul... 56 1e-042
gb|CV260564.1|CV260564 WS02014.B21_G14 PTxN-IB-N-A-11 Popul... 56 2e-042
gb|CV259723.1|CV259723 WS02012.B21_B17 PTxN-IB-N-A-11 Popul... 56 4e-040
gb|CX659519.1|CX659519 PO01031F07 Poplar SC cDNA library Po... 57 9e-037
gb|CV258295.1|CV258295 WS0249.B21_B24 PTxD-ICC-N-A-14 Popul... 56 3e-035
gb|BU815039.1|BU815039 N036D09 Populus bark cDNA library Po... 58 1e-034
gb|CV270280.1|CV270280 WS0151.B21_J04 PTxN-IB-A-6 Populus t... 56 3e-033
gb|DT507734.1|DT507734 WS02419.BR_B06 PTxD-ICC-N-A-14 Popul... 56 3e-032
gb|BU889652.1|BU889652 P023H02 Populus petioles cDNA librar... 75 4e-026
gb|CX654042.1|CX654042 PO02012B10 Poplar SC cDNA library Po... 57 2e-025
gb|BI138921.1|BI138921 F119P23Y Populus flower cDNA library... 56 4e-025
gb|DT495986.1|DT495986 WS01122.BR_B07 PT-P-FL-A-2 Populus t... 62 4e-024
gb|BU896063.1|BU896063 X034H10 Populus wood cDNA library Po... 69 4e-023
gb|BU893439.1|BU893439 P077G06 Populus petioles cDNA librar... 58 5e-022
gb|CA826064.1|CA826064 R72A08 two-month-old roots from clon... 76 7e-022
gb|CV261587.1|CV261587 WS02017.B21_D05 PTxN-IB-N-A-11 Popul... 56 2e-021
gb|BU895814.1|BU895814 X031D08 Populus wood cDNA library Po... 52 4e-021
>gb|DT518564.1|DT518564 WS02438.B21_I18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02438_I18 3', mRNA sequence
Length = 905
Score = 55.6 bits (115), Expect(6) = 3e-043
Identities = 18/40 (45%), Positives = 30/40 (75%)
Frame = -3 / -1
Query: 979 YHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
+HFDLSG AFG++A G D++R+ G++ ++ +RV C +P
Sbjct: 587 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWP 468
Score = 53.3 bits (110), Expect(6) = 3e-043
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = -3 / -1
Query: 739 SAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVI 620
S W PM+ SWGA+W++D L+ P SI+LTS K I
Sbjct: 347 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 228
Score = 44.6 bits (91), Expect(6) = 3e-043
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -3 / -1
Query: 1150 VNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 1055
V P+S + G I+K G+GCG+CY+V+C
Sbjct: 773 VEQAPFSSFISAGGDSIYKSGQGCGACYQVKC 678
Score = 44.1 bits (90), Expect(6) = 3e-043
Identities = 14/42 (33%), Positives = 27/42 (64%)
Frame = -3 / -1
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAE 731
G+ + FH++ G NP Y A +V+Y DG++ +E++ L ++
Sbjct: 467 GKTVTFHVDSGSNPYYFATVVEYEDGDGELKSVELKQALDSD 342
Score = 39.6 bits (80), Expect(6) = 3e-043
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = -3 / -1
Query: 640 ESGKKVIAKDVIPANWRPDAVYTSNVQFY*TL 545
ESGK ++A VIPA W P Y S V F * L
Sbjct: 245 ESGKTIVASGVIPAGWAPGQTYRSLVNFN*WL 150
Score = 29.9 bits (59), Expect(6) = 3e-043
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -3 / -1
Query: 1039 CSGNPVTVYITD 1004
CSGNPVTV ITD
Sbjct: 656 CSGNPVTVVITD 621
>gb|DT512363.1|DT512363 WS02419.B21_B06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02419_B06 3', mRNA sequence
Length = 837
Score = 55.6 bits (115), Expect(6) = 3e-043
Identities = 18/40 (45%), Positives = 30/40 (75%)
Frame = -3 / -2
Query: 979 YHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
+HFDLSG AFG++A G D++R+ G++ ++ +RV C +P
Sbjct: 587 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWP 468
Score = 53.3 bits (110), Expect(6) = 3e-043
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = -3 / -2
Query: 739 SAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVI 620
S W PM+ SWGA+W++D L+ P SI+LTS K I
Sbjct: 347 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 228
Score = 44.6 bits (91), Expect(6) = 3e-043
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -3 / -2
Query: 1150 VNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 1055
V P+S + G I+K G+GCG+CY+V+C
Sbjct: 773 VEQAPFSSFISAGGDSIYKSGQGCGACYQVKC 678
Score = 44.1 bits (90), Expect(6) = 3e-043
Identities = 14/42 (33%), Positives = 27/42 (64%)
Frame = -3 / -2
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAE 731
G+ + FH++ G NP Y A +V+Y DG++ +E++ L ++
Sbjct: 467 GKTVTFHVDSGSNPYYFATVVEYEDGDGELKSVELKQALDSD 342
Score = 39.6 bits (80), Expect(6) = 3e-043
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = -3 / -2
Query: 640 ESGKKVIAKDVIPANWRPDAVYTSNVQFY*TL 545
ESGK ++A VIPA W P Y S V F * L
Sbjct: 245 ESGKTIVASGVIPAGWAPGQTYRSLVNFN*WL 150
Score = 29.9 bits (59), Expect(6) = 3e-043
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -3 / -2
Query: 1039 CSGNPVTVYITD 1004
CSGNPVTV ITD
Sbjct: 656 CSGNPVTVVITD 621
>gb|DT517819.1|DT517819 WS02435.B21_G10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_G10 3', mRNA sequence
Length = 831
Score = 55.6 bits (115), Expect(6) = 3e-043
Identities = 18/40 (45%), Positives = 30/40 (75%)
Frame = -3 / -1
Query: 979 YHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
+HFDLSG AFG++A G D++R+ G++ ++ +RV C +P
Sbjct: 567 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWP 448
Score = 53.3 bits (110), Expect(6) = 3e-043
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = -3 / -1
Query: 739 SAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVI 620
S W PM+ SWGA+W++D L+ P SI+LTS K I
Sbjct: 327 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 208
Score = 44.6 bits (91), Expect(6) = 3e-043
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -3 / -1
Query: 1150 VNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 1055
V P+S + G I+K G+GCG+CY+V+C
Sbjct: 753 VEQAPFSSFISAGGDSIYKSGQGCGACYQVKC 658
Score = 44.1 bits (90), Expect(6) = 3e-043
Identities = 14/42 (33%), Positives = 27/42 (64%)
Frame = -3 / -1
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAE 731
G+ + FH++ G NP Y A +V+Y DG++ +E++ L ++
Sbjct: 447 GKTVTFHVDSGSNPYYFATVVEYEDGDGELKSVELKQALDSD 322
Score = 39.6 bits (80), Expect(6) = 3e-043
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = -3 / -1
Query: 640 ESGKKVIAKDVIPANWRPDAVYTSNVQFY*TL 545
ESGK ++A VIPA W P Y S V F * L
Sbjct: 225 ESGKTIVASGVIPAGWAPGQTYRSLVNFN*WL 130
Score = 29.9 bits (59), Expect(6) = 3e-043
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -3 / -1
Query: 1039 CSGNPVTVYITD 1004
CSGNPVTV ITD
Sbjct: 636 CSGNPVTVVITD 601
>gb|CV257933.1|CV257933 WS0248.B21_A20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0248_A20 3', mRNA sequence
Length = 808
Score = 55.6 bits (115), Expect(6) = 1e-042
Identities = 18/40 (45%), Positives = 30/40 (75%)
Frame = -3 / -3
Query: 979 YHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
+HFDLSG AFG++A G D++R+ G++ ++ +RV C +P
Sbjct: 566 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWP 447
Score = 53.3 bits (110), Expect(6) = 1e-042
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = -3 / -3
Query: 739 SAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVI 620
S W PM+ SWGA+W++D L+ P SI+LTS K I
Sbjct: 326 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 207
Score = 44.1 bits (90), Expect(6) = 1e-042
Identities = 14/42 (33%), Positives = 27/42 (64%)
Frame = -3 / -3
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAE 731
G+ + FH++ G NP Y A +V+Y DG++ +E++ L ++
Sbjct: 446 GKTVTFHVDSGSNPYYFATVVEYEDGDGELKSVELKQALDSD 321
Score = 42.3 bits (86), Expect(6) = 1e-042
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -3 / -3
Query: 1150 VNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 1055
V P S + G I+K G+GCG+CY+V+C
Sbjct: 752 VEQAPSSSFISAGGDSIYKSGQGCGACYQVKC 657
Score = 39.6 bits (80), Expect(6) = 1e-042
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = -3 / -3
Query: 640 ESGKKVIAKDVIPANWRPDAVYTSNVQFY*TL 545
ESGK ++A VIPA W P Y S V F * L
Sbjct: 224 ESGKTIVASGVIPAGWAPGQTYRSLVNFN*WL 129
Score = 29.9 bits (59), Expect(6) = 1e-042
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -3 / -3
Query: 1039 CSGNPVTVYITD 1004
CSGNPVTV ITD
Sbjct: 635 CSGNPVTVVITD 600
>gb|CV260564.1|CV260564 WS02014.B21_G14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02014_G14 3', mRNA sequence
Length = 893
Score = 55.6 bits (115), Expect(6) = 2e-042
Identities = 18/40 (45%), Positives = 30/40 (75%)
Frame = -3 / -3
Query: 979 YHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
+HFDLSG AFG++A G D++R+ G++ ++ +RV C +P
Sbjct: 639 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWP 520
Score = 53.3 bits (110), Expect(6) = 2e-042
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = -3 / -3
Query: 739 SAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVI 620
S W PM+ SWGA+W++D L+ P SI+LTS K I
Sbjct: 399 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 280
Score = 44.1 bits (90), Expect(6) = 2e-042
Identities = 14/42 (33%), Positives = 27/42 (64%)
Frame = -3 / -3
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAE 731
G+ + FH++ G NP Y A +V+Y DG++ +E++ L ++
Sbjct: 519 GKTVTFHVDSGSNPYYFATVVEYEDGDGELKSVELKQALDSD 394
Score = 41.8 bits (85), Expect(6) = 2e-042
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3 / -3
Query: 1150 VNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 1055
V P+ + G I+K G+GCG+CY+V+C
Sbjct: 825 VEQAPFFSFISAGGDSIYKSGQGCGACYQVKC 730
Score = 39.6 bits (80), Expect(6) = 2e-042
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = -3 / -3
Query: 640 ESGKKVIAKDVIPANWRPDAVYTSNVQFY*TL 545
ESGK ++A VIPA W P Y S V F * L
Sbjct: 297 ESGKTIVASGVIPAGWAPGQTYRSLVNFN*WL 202
Score = 29.9 bits (59), Expect(6) = 2e-042
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -3 / -3
Query: 1039 CSGNPVTVYITD 1004
CSGNPVTV ITD
Sbjct: 708 CSGNPVTVVITD 673
>gb|CV259723.1|CV259723 WS02012.B21_B17 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02012_B17 3', mRNA sequence
Length = 724
Score = 55.6 bits (115), Expect(6) = 4e-040
Identities = 18/40 (45%), Positives = 30/40 (75%)
Frame = -3 / -2
Query: 979 YHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
+HFDLSG AFG++A G D++R+ G++ ++ +RV C +P
Sbjct: 591 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWP 472
Score = 53.3 bits (110), Expect(6) = 4e-040
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = -3 / -2
Query: 739 SAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVI 620
S W PM+ SWGA+W++D L+ P SI+LTS K I
Sbjct: 351 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 232
Score = 44.1 bits (90), Expect(6) = 4e-040
Identities = 14/42 (33%), Positives = 27/42 (64%)
Frame = -3 / -2
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAE 731
G+ + FH++ G NP Y A +V+Y DG++ +E++ L ++
Sbjct: 471 GKTVTFHVDSGSNPYYFATVVEYEDGDGELKSVELKQALDSD 346
Score = 39.6 bits (80), Expect(6) = 4e-040
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = -3 / -2
Query: 640 ESGKKVIAKDVIPANWRPDAVYTSNVQFY*TL 545
ESGK ++A VIPA W P Y S V F * L
Sbjct: 249 ESGKTIVASGVIPAGWAPGQTYRSLVNFN*WL 154
Score = 33.6 bits (67), Expect(6) = 4e-040
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = -3 / -2
Query: 1096 KDGKGCGSCYEVRC 1055
K G+GCG+CY+V+C
Sbjct: 723 KSGQGCGACYQVKC 682
Score = 29.9 bits (59), Expect(6) = 4e-040
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -3 / -2
Query: 1039 CSGNPVTVYITD 1004
CSGNPVTV ITD
Sbjct: 660 CSGNPVTVVITD 625
>gb|CX659519.1|CX659519 PO01031F07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01031F07 5', mRNA sequence
Length = 633
Score = 57.0 bits (118), Expect(5) = 9e-037
Identities = 19/40 (47%), Positives = 30/40 (75%)
Frame = -3 / +3
Query: 979 YHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
+HFDLSG AFG++A G D++R+ G++ +E +RV C +P
Sbjct: 87 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWP 206
Score = 53.3 bits (110), Expect(5) = 9e-037
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = -3 / +3
Query: 739 SAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVI 620
S W PM+ SWGA+W++D L+ P SI+LTS K I
Sbjct: 327 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 446
Score = 47.8 bits (98), Expect(5) = 9e-037
Identities = 16/42 (38%), Positives = 28/42 (66%)
Frame = -3 / +3
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAE 731
G+ + FH++ G NP Y A LV+Y DGD+ +E++ L+++
Sbjct: 207 GKTVTFHVDSGSNPYYFATLVEYEDGDGDLKSVELKQALNSD 332
Score = 39.6 bits (80), Expect(5) = 9e-037
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = -3 / +3
Query: 640 ESGKKVIAKDVIPANWRPDAVYTSNVQFY*TL 545
ESGK ++A VIPA W P Y S V F * L
Sbjct: 429 ESGKTIVASGVIPAGWAPGQTYRSLVNFN*WL 524
Score = 29.9 bits (59), Expect(5) = 9e-037
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -3 / +3
Query: 1039 CSGNPVTVYITD 1004
CSGNPVTV ITD
Sbjct: 18 CSGNPVTVVITD 53
>gb|CV258295.1|CV258295 WS0249.B21_B24 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0249_B24 3', mRNA sequence
Length = 741
Score = 55.6 bits (115), Expect(5) = 3e-035
Identities = 18/40 (45%), Positives = 30/40 (75%)
Frame = -3 / -1
Query: 979 YHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
+HFDLSG AFG++A G D++R+ G++ ++ +RV C +P
Sbjct: 663 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWP 544
Score = 53.3 bits (110), Expect(5) = 3e-035
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = -3 / -1
Query: 739 SAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVI 620
S W PM+ SWGA+W++D L+ P SI+LTS K I
Sbjct: 423 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 304
Score = 44.1 bits (90), Expect(5) = 3e-035
Identities = 14/42 (33%), Positives = 27/42 (64%)
Frame = -3 / -1
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAE 731
G+ + FH++ G NP Y A +V+Y DG++ +E++ L ++
Sbjct: 543 GKTVTFHVDSGSNPYYFATVVEYEDGDGELKSVELKQALDSD 418
Score = 39.6 bits (80), Expect(5) = 3e-035
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = -3 / -1
Query: 640 ESGKKVIAKDVIPANWRPDAVYTSNVQFY*TL 545
ESGK ++A VIPA W P Y S V F * L
Sbjct: 321 ESGKTIVASGVIPAGWAPGQTYRSLVNFN*WL 226
Score = 29.9 bits (59), Expect(5) = 3e-035
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -3 / -1
Query: 1039 CSGNPVTVYITD 1004
CSGNPVTV ITD
Sbjct: 732 CSGNPVTVVITD 697
>gb|BU815039.1|BU815039 N036D09 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 767
Score = 58.3 bits (121), Expect(4) = 1e-034
Identities = 20/49 (40%), Positives = 32/49 (65%)
Frame = -3 / +1
Query: 1150 VNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITD 1004
V++ P+ + +FK+G+GCG+CY+VRC +K CS VT+ +TD
Sbjct: 37 VDVKPFRARVGAVSPVLFKNGEGCGACYKVRCLDKSICSRRAVTIIVTD 183
Score = 54.7 bits (113), Expect(4) = 1e-034
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = -3 / +1
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIW 695
G+ I FH+ +G +L++LV++ DGD+ M I++ EW M WGA W
Sbjct: 337 GKNIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREAGGTEWLEMNHVWGATW 498
Score = 52.4 bits (108), Expect(4) = 1e-034
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -3 / +1
Query: 976 HFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
HFDLSG AFG +A G N ++R+ G + V +RR CKYP
Sbjct: 220 HFDLSGAAFGRMAISGENGQLRNRGELPVIYRRTPCKYP 336
Score = 37.7 bits (76), Expect(4) = 1e-034
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3 / +1
Query: 646 TSESGKKVIAKDVIPANWRPDAVYTSNVQFY 554
T + + + A++VIP NW P A YTS + F+
Sbjct: 547 TLSTRRTLSAREVIPRNWAPKATYTSRLNFF 639
>gb|CV270280.1|CV270280 WS0151.B21_J04 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0151_J04 3', mRNA sequence
Length = 913
Score = 55.6 bits (115), Expect(5) = 3e-033
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = -3 / -2
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIW 695
G+ I FH+ +G +L++LV++ DGD+ M I++ EW M WGA W
Sbjct: 681 GKNIAFHVNEGSTDYWLSILVEFEDGDGDVGSMHIREAGGTEWLEMNHVWGATW 520
Score = 51.9 bits (107), Expect(5) = 3e-033
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -3 / -2
Query: 976 HFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
HFDLSG AFG +A G N ++R+ G + V +RR CKYP
Sbjct: 798 HFDLSGAAFGRMAISGENGQLRNRGEIPVIYRRTPCKYP 682
Score = 42.8 bits (87), Expect(5) = 3e-033
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = -3 / -2
Query: 1081 CGSCYEVRCKEKPECSGNPVTVYITD 1004
CG+CY+VRC +K CS VT+ +TD
Sbjct: 912 CGACYKVRCLDKSICSRRAVTIIVTD 835
Score = 40.9 bits (83), Expect(5) = 3e-033
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = -3 / -2
Query: 646 TSESGKKVIAKDVIPANWRPDAVYTSNVQFY 554
T +G+ + A++VIP NW P A YTS + F+
Sbjct: 471 TLTTGRTLSAREVIPRNWAPKATYTSRLNFF 379
Score = 24.4 bits (47), Expect(5) = 3e-033
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = -3 / -2
Query: 673 LKGPFSIRLTS 641
LKGPFS++LT+
Sbjct: 501 LKGPFSVKLTT 469
>gb|DT507734.1|DT507734 WS02419.BR_B06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02419_B06 5', mRNA sequence
Length = 772
Score = 55.6 bits (115), Expect(5) = 3e-032
Identities = 18/40 (45%), Positives = 30/40 (75%)
Frame = -3 / +2
Query: 979 YHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
+HFDLSG AFG++A G D++R+ G++ ++ +RV C +P
Sbjct: 452 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWP 571
Score = 44.6 bits (91), Expect(5) = 3e-032
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -3 / +2
Query: 1150 VNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 1055
V P+S + G I+K G+GCG+CY+V+C
Sbjct: 266 VEQAPFSSFISAGGDSIYKSGQGCGACYQVKC 361
Score = 40.9 bits (83), Expect(5) = 3e-032
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3 / +1
Query: 739 SAEWKPMKLSWGAIWRMDTAKALKGP 662
S W PM+ SWGA+W++D L+ P
Sbjct: 691 SDSWVPMQKSWGAVWKLDAGSLLRAP 768
Score = 40.9 bits (83), Expect(5) = 3e-032
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -3 / +2
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEI 752
G+ + FH++ G NP Y A +V+Y DG++ +E+
Sbjct: 572 GKTVTFHVDSGSNPYYFATVVEYEDGDGELKSVEL 676
Score = 29.9 bits (59), Expect(5) = 3e-032
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -3 / +2
Query: 1039 CSGNPVTVYITD 1004
CSGNPVTV ITD
Sbjct: 383 CSGNPVTVVITD 418
>gb|BU889652.1|BU889652 P023H02 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 705
Score = 74.8 bits (157), Expect(3) = 4e-026
Identities = 35/100 (35%), Positives = 52/100 (52%)
Frame = -3 / +3
Query: 973 FDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLV 794
F LS +AF ++A G+ I GI+DVE++RV C+Y V E PNYLA+ +
Sbjct: 279 FVLSSRAFMAMANKGMGQDILKHGILDVEYKRVPCEYKNQNLAVRVEESSKKPNYLAIKL 458
Query: 793 KYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKA 674
Y ++V M++ S+ W M + GA+W D A
Sbjct: 459 LYQGGQTEVVAMDVAKVGSSNWGFMSRNHGAVWDTDRVPA 578
Score = 52.8 bits (109), Expect(3) = 4e-026
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = -3 / +3
Query: 1132 SGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMN 998
SG A +KDG GCG+C+++RCK CS V +TD+N
Sbjct: 126 SGHLAAAVSSPYKDGAGCGACFQIRCKNTALCSSRGTRVVVTDLN 260
Score = 29.0 bits (57), Expect(3) = 4e-026
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3 / +3
Query: 634 GKKVIAKDVIPANWRPDAVYTSNVQ 560
GK + AK V+P +W+ Y S VQ
Sbjct: 621 GKWIWAKKVLPEDWKRGMTYDSGVQ 695
>gb|CX654042.1|CX654042 PO02012B10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02012B10 5', mRNA sequence
Length = 639
Score = 57.0 bits (118), Expect(4) = 2e-025
Identities = 19/40 (47%), Positives = 30/40 (75%)
Frame = -3 / +2
Query: 979 YHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
+HFDLSG AFG++A G D++R+ G++ +E +RV C +P
Sbjct: 431 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWP 550
Score = 45.5 bits (93), Expect(4) = 2e-025
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = -3 / +2
Query: 1150 VNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 1055
V P+S + + G I+K G+GCG+CY+V+C
Sbjct: 245 VEQAPFSSLISAGGDSIYKSGQGCGACYQVKC 340
Score = 39.1 bits (79), Expect(4) = 2e-025
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -3 / +2
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGD 770
G+K+ FH++ G NP Y A LV+ DGD
Sbjct: 551 GKKVTFHVDSGSNPYYFATLVE*QHGDGD 637
Score = 29.9 bits (59), Expect(4) = 2e-025
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -3 / +2
Query: 1039 CSGNPVTVYITD 1004
CSGNPVTV ITD
Sbjct: 362 CSGNPVTVVITD 397
>gb|BI138921.1|BI138921 F119P23Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 493
Score = 55.6 bits (115), Expect(4) = 4e-025
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = -3 / +1
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIW 695
G+ I FH+ +G +L++LV++ DGD+ M I++ EW M WGA W
Sbjct: 184 GKNIAFHVNEGSTDYWLSILVEFEDGDGDVGSMHIREAGGTEWLEMNHVWGATW 345
Score = 49.6 bits (102), Expect(4) = 4e-025
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = -3 / +1
Query: 976 HFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
HFDLSG AFG +A G N ++R+ G + V +RR C YP
Sbjct: 67 HFDLSGAAFGRMAISGENGQLRNRGEIPVIYRRTPCNYP 183
Score = 40.9 bits (83), Expect(4) = 4e-025
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = -3 / +1
Query: 646 TSESGKKVIAKDVIPANWRPDAVYTSNVQFY 554
T +G+ + A++VIP NW P A YTS + F+
Sbjct: 394 TLTTGRTLSAREVIPRNWTPKATYTSRLNFF 486
Score = 24.4 bits (47), Expect(4) = 4e-025
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = -3 / +1
Query: 673 LKGPFSIRLTS 641
LKGPFS++LT+
Sbjct: 364 LKGPFSVKLTT 396
>gb|DT495986.1|DT495986 WS01122.BR_B07 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01122_B07 5', mRNA sequence
Length = 895
Score = 62.0 bits (129), Expect(3) = 4e-024
Identities = 31/96 (32%), Positives = 48/96 (50%)
Frame = -3 / +1
Query: 973 FDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLV 794
F LS +AF ++A I GI++VE++RV C+Y V E N NYLA+ +
Sbjct: 388 FVLSSRAFMAMANKDKGRNILKQGIVEVEYKRVPCEYKNQNLAVRVEESSKNSNYLAIKL 567
Query: 793 KYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMD 686
Y ++V ++ S+ W M + GA+W D
Sbjct: 568 LYQGGQTEVVAIDFAKVGSSNWGFMSRNHGAVWDSD 675
Score = 55.6 bits (115), Expect(3) = 4e-024
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = -3 / +1
Query: 1132 SGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMN 998
SG A ++KDG GCG+C+++RCK+ CS V +TD+N
Sbjct: 235 SGHLAAAVSSLYKDGSGCGACFQIRCKDTTLCSREGTRVIVTDLN 369
Score = 32.2 bits (64), Expect(3) = 4e-024
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3 / +1
Query: 634 GKKVIAKDVIPANWRPDAVYTSNVQ 560
GK + A++V+P +W+P Y S VQ
Sbjct: 730 GKWIWARNVLPEDWKPGMTYDSXVQ 804
>gb|BU896063.1|BU896063 X034H10 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 721
Score = 68.9 bits (144), Expect(3) = 4e-023
Identities = 35/111 (31%), Positives = 55/111 (49%)
Frame = -3 / +2
Query: 973 FDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLV 794
F LS +AF ++A I GI++VE++RV C+Y V E NPNYLA+ +
Sbjct: 116 FVLSSRAFMAMANKDSGRNILKQGIVEVEYKRVPCEYKNQNMAVRVEESSKNPNYLAIKL 295
Query: 793 KYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTS 641
Y ++V ++ S+ W M ++GA+W D + F +TS
Sbjct: 296 LYQGGQTEVVAIDFAKVGSSNWGFMSRNYGAVWDSDRVPSGALQFRFVITS 448
Score = 48.7 bits (100), Expect(3) = 4e-023
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = -3 / +2
Query: 1093 DGKGCGSCYEVRCKEKPECSGNPVTVYITDMN 998
DG GCG+C+++RCK+ CS V +TD+N
Sbjct: 2 DGSGCGACFQIRCKDTTLCSREGTRVIVTDLN 97
Score = 29.0 bits (57), Expect(3) = 4e-023
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3 / +2
Query: 634 GKKVIAKDVIPANWRPDAVYTSNVQ 560
GK + A++V+P +W+ Y S VQ
Sbjct: 458 GKWIWARNVLPEDWKAGMTYDSGVQ 532
>gb|BU893439.1|BU893439 P077G06 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 463
Score = 58.3 bits (121), Expect(3) = 5e-022
Identities = 20/49 (40%), Positives = 32/49 (65%)
Frame = -3 / +3
Query: 1150 VNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITD 1004
V++ P+ + +FK+G+GCG+CY+VRC +K CS VT+ +TD
Sbjct: 63 VDVKPFRARVGAVSPVLFKNGEGCGACYKVRCLDKSICSRRAVTIIVTD 209
Score = 51.0 bits (105), Expect(3) = 5e-022
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = -3 / +3
Query: 976 HFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
HFDLSG A G +A G N ++R+ G + V +RR CKYP
Sbjct: 246 HFDLSGAAIGRMAISGENGQLRNRGELPVSYRRTPCKYP 362
Score = 33.6 bits (67), Expect(3) = 5e-022
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3 / +3
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDI 767
G+ I FH+ +G +L++LV++ DGD+
Sbjct: 363 GKNIAFHVNEGSTDYWLSLLVEFEDGDGDV 452
>gb|CA826064.1|CA826064 R72A08 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 622
Score = 76.2 bits (160), Expect(2) = 7e-022
Identities = 31/95 (32%), Positives = 57/95 (60%)
Frame = -3 / +3
Query: 973 FDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLV 794
F LS +A+ +A P + ++ G++DVEFRR+ C+Y + + E P+YLA+++
Sbjct: 318 FILSPRAYARMAHPNMAVELIAYGVVDVEFRRIPCRYSGYKLMFKVHEHSRYPDYLAIIL 497
Query: 793 KYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRM 689
Y A +I+ +E+ + EW+ M+ ++GA+W M
Sbjct: 498 LYQAGQNEILAVELWQEDCKEWRGMRRAYGAVWDM 602
Score = 48.7 bits (100), Expect(2) = 7e-022
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = -3 / +3
Query: 1102 IFKDGKGCGSCYEVRCKEKPECSGNPVTVYITD 1004
++K+G GCG CY+VRCK C+ + V V +TD
Sbjct: 195 LYKNGTGCGGCYQVRCKAPNLCTDDGVNVVVTD 293
>gb|CV261587.1|CV261587 WS02017.B21_D05 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02017_D05 3', mRNA sequence
Length = 803
Score = 55.6 bits (115), Expect(4) = 2e-021
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = -3 / -1
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIW 695
G+ I FH+ +G +L++LV++ DGD+ M I++ EW M WGA W
Sbjct: 704 GKNIAFHVNEGSTDYWLSILVEFEDGDGDVGSMHIREAGGTEWLEMNHVWGATW 543
Score = 40.9 bits (83), Expect(4) = 2e-021
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = -3 / -1
Query: 646 TSESGKKVIAKDVIPANWRPDAVYTSNVQFY 554
T +G+ + A++VIP NW P A YTS + F+
Sbjct: 494 TLTTGRTLSAREVIPRNWAPKATYTSRLNFF 402
Score = 36.8 bits (74), Expect(4) = 2e-021
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = -3 / -1
Query: 955 AFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
AFG +A G N ++R+ G + V +RR CKYP
Sbjct: 800 AFGRMAISGENGQLRNRGEIPVIYRRTPCKYP 705
Score = 24.4 bits (47), Expect(4) = 2e-021
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = -3 / -1
Query: 673 LKGPFSIRLTS 641
LKGPFS++LT+
Sbjct: 524 LKGPFSVKLTT 492
>gb|BU895814.1|BU895814 X031D08 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 624
Score = 52.4 bits (108), Expect(3) = 4e-021
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -3 / +1
Query: 976 HFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYP 860
HFDLSG AFG +A G N ++R+ G + V +RR CKYP
Sbjct: 169 HFDLSGAAFGRMAISGENGQLRNRGELPVIYRRTPCKYP 285
Score = 50.6 bits (104), Expect(3) = 4e-021
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = -3 / +1
Query: 1114 GNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITD 1004
G +FK+G+G G+CY+VRC +K CS VT+ +TD
Sbjct: 22 GEPVLFKNGEGRGACYKVRCLDKSICSRRAVTIIVTD 132
Score = 36.8 bits (74), Expect(3) = 4e-021
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = -3 / +1
Query: 856 GQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQD 746
G+ I FH+ +G +L++LV++ DGD+ M I++
Sbjct: 286 GKNIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIRE 396
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 673,455,420
Number of Sequences: 369679
Number of extensions: 10090976
Number of successful extensions: 54265
Number of sequences better than 1.0e-020: 22
length of database: 67,802,888
effective HSP length: 54
effective length of database: 47,840,222
effective search space used: 19853692130
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)