TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161272.2.15
(797 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT518564.1|DT518564 WS02438.B21_I18 PTxD-ICC-N-A-14 Popu... 57 2e-039
gb|CV260564.1|CV260564 WS02014.B21_G14 PTxN-IB-N-A-11 Popul... 57 2e-039
gb|DT512363.1|DT512363 WS02419.B21_B06 PTxD-ICC-N-A-14 Popu... 57 2e-039
gb|DT517819.1|DT517819 WS02435.B21_G10 PTxD-ICC-N-A-14 Popu... 57 2e-039
gb|CV257933.1|CV257933 WS0248.B21_A20 PTxD-ICC-N-A-14 Popul... 57 2e-039
gb|CV259723.1|CV259723 WS02012.B21_B17 PTxN-IB-N-A-11 Popul... 57 2e-039
gb|CX659519.1|CX659519 PO01031F07 Poplar SC cDNA library Po... 58 1e-036
gb|CV258295.1|CV258295 WS0249.B21_B24 PTxD-ICC-N-A-14 Popul... 57 3e-035
gb|CV270280.1|CV270280 WS0151.B21_J04 PTxN-IB-A-6 Populus t... 57 3e-034
gb|BU815039.1|BU815039 N036D09 Populus bark cDNA library Po... 56 9e-033
gb|DT507734.1|DT507734 WS02419.BR_B06 PTxD-ICC-N-A-14 Popul... 57 2e-028
gb|BI138921.1|BI138921 F119P23Y Populus flower cDNA library... 57 6e-026
gb|CV261587.1|CV261587 WS02017.B21_D05 PTxN-IB-N-A-11 Popul... 57 3e-022
gb|CX654042.1|CX654042 PO02012B10 Poplar SC cDNA library Po... 58 8e-022
>gb|DT518564.1|DT518564 WS02438.B21_I18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02438_I18 3', mRNA sequence
Length = 905
Score = 56.5 bits (117), Expect(6) = 2e-039
Identities = 19/40 (47%), Positives = 30/40 (75%)
Frame = +2 / -1
Query: 113 YHFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYP 232
+HFDLSG AFG++A G D+LR+ G++ ++ +RV C +P
Sbjct: 587 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWP 468
Score = 53.3 bits (110), Expect(6) = 2e-039
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +2 / -1
Query: 353 SAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVI 472
S W PM+ SWGA+W++D L+ P SI+LTS K I
Sbjct: 347 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 228
Score = 42.3 bits (86), Expect(6) = 2e-039
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +2 / -1
Query: 236 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAE 361
G+ + FH++ G NP Y A +V++ DG++ +E++ L ++
Sbjct: 467 GKTVTFHVDSGSNPYYFATVVEYEDGDGELKSVELKQALDSD 342
Score = 39.1 bits (79), Expect(6) = 2e-039
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2 / -1
Query: 452 ESGKKVIAKDIIPANWRPDAVYTSNVQFY*TL 547
ESGK ++A +IPA W P Y S V F * L
Sbjct: 245 ESGKTIVASGVIPAGWAPGQTYRSLVNFN*WL 150
Score = 31.3 bits (62), Expect(6) = 2e-039
Identities = 8/12 (66%), Positives = 12/12 (100%)
Frame = +2 / -1
Query: 2 GKGCGSCYEVRC 37
G+GCG+CY+V+C
Sbjct: 713 GQGCGACYQVKC 678
Score = 29.9 bits (59), Expect(6) = 2e-039
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2 / -1
Query: 53 CSGNPVTVFITD 88
CSGNPVTV ITD
Sbjct: 656 CSGNPVTVVITD 621
>gb|CV260564.1|CV260564 WS02014.B21_G14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02014_G14 3', mRNA sequence
Length = 893
Score = 56.5 bits (117), Expect(6) = 2e-039
Identities = 19/40 (47%), Positives = 30/40 (75%)
Frame = +2 / -3
Query: 113 YHFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYP 232
+HFDLSG AFG++A G D+LR+ G++ ++ +RV C +P
Sbjct: 639 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWP 520
Score = 53.3 bits (110), Expect(6) = 2e-039
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +2 / -3
Query: 353 SAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVI 472
S W PM+ SWGA+W++D L+ P SI+LTS K I
Sbjct: 399 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 280
Score = 42.3 bits (86), Expect(6) = 2e-039
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +2 / -3
Query: 236 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAE 361
G+ + FH++ G NP Y A +V++ DG++ +E++ L ++
Sbjct: 519 GKTVTFHVDSGSNPYYFATVVEYEDGDGELKSVELKQALDSD 394
Score = 39.1 bits (79), Expect(6) = 2e-039
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2 / -3
Query: 452 ESGKKVIAKDIIPANWRPDAVYTSNVQFY*TL 547
ESGK ++A +IPA W P Y S V F * L
Sbjct: 297 ESGKTIVASGVIPAGWAPGQTYRSLVNFN*WL 202
Score = 31.3 bits (62), Expect(6) = 2e-039
Identities = 8/12 (66%), Positives = 12/12 (100%)
Frame = +2 / -3
Query: 2 GKGCGSCYEVRC 37
G+GCG+CY+V+C
Sbjct: 765 GQGCGACYQVKC 730
Score = 29.9 bits (59), Expect(6) = 2e-039
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2 / -3
Query: 53 CSGNPVTVFITD 88
CSGNPVTV ITD
Sbjct: 708 CSGNPVTVVITD 673
>gb|DT512363.1|DT512363 WS02419.B21_B06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02419_B06 3', mRNA sequence
Length = 837
Score = 56.5 bits (117), Expect(6) = 2e-039
Identities = 19/40 (47%), Positives = 30/40 (75%)
Frame = +2 / -2
Query: 113 YHFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYP 232
+HFDLSG AFG++A G D+LR+ G++ ++ +RV C +P
Sbjct: 587 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWP 468
Score = 53.3 bits (110), Expect(6) = 2e-039
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +2 / -2
Query: 353 SAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVI 472
S W PM+ SWGA+W++D L+ P SI+LTS K I
Sbjct: 347 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 228
Score = 42.3 bits (86), Expect(6) = 2e-039
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +2 / -2
Query: 236 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAE 361
G+ + FH++ G NP Y A +V++ DG++ +E++ L ++
Sbjct: 467 GKTVTFHVDSGSNPYYFATVVEYEDGDGELKSVELKQALDSD 342
Score = 39.1 bits (79), Expect(6) = 2e-039
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2 / -2
Query: 452 ESGKKVIAKDIIPANWRPDAVYTSNVQFY*TL 547
ESGK ++A +IPA W P Y S V F * L
Sbjct: 245 ESGKTIVASGVIPAGWAPGQTYRSLVNFN*WL 150
Score = 31.3 bits (62), Expect(6) = 2e-039
Identities = 8/12 (66%), Positives = 12/12 (100%)
Frame = +2 / -2
Query: 2 GKGCGSCYEVRC 37
G+GCG+CY+V+C
Sbjct: 713 GQGCGACYQVKC 678
Score = 29.9 bits (59), Expect(6) = 2e-039
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2 / -2
Query: 53 CSGNPVTVFITD 88
CSGNPVTV ITD
Sbjct: 656 CSGNPVTVVITD 621
>gb|DT517819.1|DT517819 WS02435.B21_G10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_G10 3', mRNA sequence
Length = 831
Score = 56.5 bits (117), Expect(6) = 2e-039
Identities = 19/40 (47%), Positives = 30/40 (75%)
Frame = +2 / -1
Query: 113 YHFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYP 232
+HFDLSG AFG++A G D+LR+ G++ ++ +RV C +P
Sbjct: 567 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWP 448
Score = 53.3 bits (110), Expect(6) = 2e-039
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +2 / -1
Query: 353 SAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVI 472
S W PM+ SWGA+W++D L+ P SI+LTS K I
Sbjct: 327 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 208
Score = 42.3 bits (86), Expect(6) = 2e-039
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +2 / -1
Query: 236 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAE 361
G+ + FH++ G NP Y A +V++ DG++ +E++ L ++
Sbjct: 447 GKTVTFHVDSGSNPYYFATVVEYEDGDGELKSVELKQALDSD 322
Score = 39.1 bits (79), Expect(6) = 2e-039
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2 / -1
Query: 452 ESGKKVIAKDIIPANWRPDAVYTSNVQFY*TL 547
ESGK ++A +IPA W P Y S V F * L
Sbjct: 225 ESGKTIVASGVIPAGWAPGQTYRSLVNFN*WL 130
Score = 31.3 bits (62), Expect(6) = 2e-039
Identities = 8/12 (66%), Positives = 12/12 (100%)
Frame = +2 / -1
Query: 2 GKGCGSCYEVRC 37
G+GCG+CY+V+C
Sbjct: 693 GQGCGACYQVKC 658
Score = 29.9 bits (59), Expect(6) = 2e-039
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2 / -1
Query: 53 CSGNPVTVFITD 88
CSGNPVTV ITD
Sbjct: 636 CSGNPVTVVITD 601
>gb|CV257933.1|CV257933 WS0248.B21_A20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0248_A20 3', mRNA sequence
Length = 808
Score = 56.5 bits (117), Expect(6) = 2e-039
Identities = 19/40 (47%), Positives = 30/40 (75%)
Frame = +2 / -3
Query: 113 YHFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYP 232
+HFDLSG AFG++A G D+LR+ G++ ++ +RV C +P
Sbjct: 566 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWP 447
Score = 53.3 bits (110), Expect(6) = 2e-039
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +2 / -3
Query: 353 SAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVI 472
S W PM+ SWGA+W++D L+ P SI+LTS K I
Sbjct: 326 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 207
Score = 42.3 bits (86), Expect(6) = 2e-039
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +2 / -3
Query: 236 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAE 361
G+ + FH++ G NP Y A +V++ DG++ +E++ L ++
Sbjct: 446 GKTVTFHVDSGSNPYYFATVVEYEDGDGELKSVELKQALDSD 321
Score = 39.1 bits (79), Expect(6) = 2e-039
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2 / -3
Query: 452 ESGKKVIAKDIIPANWRPDAVYTSNVQFY*TL 547
ESGK ++A +IPA W P Y S V F * L
Sbjct: 224 ESGKTIVASGVIPAGWAPGQTYRSLVNFN*WL 129
Score = 31.3 bits (62), Expect(6) = 2e-039
Identities = 8/12 (66%), Positives = 12/12 (100%)
Frame = +2 / -3
Query: 2 GKGCGSCYEVRC 37
G+GCG+CY+V+C
Sbjct: 692 GQGCGACYQVKC 657
Score = 29.9 bits (59), Expect(6) = 2e-039
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2 / -3
Query: 53 CSGNPVTVFITD 88
CSGNPVTV ITD
Sbjct: 635 CSGNPVTVVITD 600
>gb|CV259723.1|CV259723 WS02012.B21_B17 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02012_B17 3', mRNA sequence
Length = 724
Score = 56.5 bits (117), Expect(6) = 2e-039
Identities = 19/40 (47%), Positives = 30/40 (75%)
Frame = +2 / -2
Query: 113 YHFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYP 232
+HFDLSG AFG++A G D+LR+ G++ ++ +RV C +P
Sbjct: 591 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWP 472
Score = 53.3 bits (110), Expect(6) = 2e-039
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +2 / -2
Query: 353 SAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVI 472
S W PM+ SWGA+W++D L+ P SI+LTS K I
Sbjct: 351 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 232
Score = 42.3 bits (86), Expect(6) = 2e-039
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +2 / -2
Query: 236 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAE 361
G+ + FH++ G NP Y A +V++ DG++ +E++ L ++
Sbjct: 471 GKTVTFHVDSGSNPYYFATVVEYEDGDGELKSVELKQALDSD 346
Score = 39.1 bits (79), Expect(6) = 2e-039
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2 / -2
Query: 452 ESGKKVIAKDIIPANWRPDAVYTSNVQFY*TL 547
ESGK ++A +IPA W P Y S V F * L
Sbjct: 249 ESGKTIVASGVIPAGWAPGQTYRSLVNFN*WL 154
Score = 31.3 bits (62), Expect(6) = 2e-039
Identities = 8/12 (66%), Positives = 12/12 (100%)
Frame = +2 / -2
Query: 2 GKGCGSCYEVRC 37
G+GCG+CY+V+C
Sbjct: 717 GQGCGACYQVKC 682
Score = 29.9 bits (59), Expect(6) = 2e-039
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2 / -2
Query: 53 CSGNPVTVFITD 88
CSGNPVTV ITD
Sbjct: 660 CSGNPVTVVITD 625
>gb|CX659519.1|CX659519 PO01031F07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01031F07 5', mRNA sequence
Length = 633
Score = 57.9 bits (120), Expect(5) = 1e-036
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = +2 / +3
Query: 113 YHFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYP 232
+HFDLSG AFG++A G D+LR+ G++ +E +RV C +P
Sbjct: 87 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWP 206
Score = 53.3 bits (110), Expect(5) = 1e-036
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +2 / +3
Query: 353 SAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVI 472
S W PM+ SWGA+W++D L+ P SI+LTS K I
Sbjct: 327 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 446
Score = 46.0 bits (94), Expect(5) = 1e-036
Identities = 15/42 (35%), Positives = 28/42 (66%)
Frame = +2 / +3
Query: 236 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAE 361
G+ + FH++ G NP Y A LV++ DGD+ +E++ L+++
Sbjct: 207 GKTVTFHVDSGSNPYYFATLVEYEDGDGDLKSVELKQALNSD 332
Score = 39.1 bits (79), Expect(5) = 1e-036
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2 / +3
Query: 452 ESGKKVIAKDIIPANWRPDAVYTSNVQFY*TL 547
ESGK ++A +IPA W P Y S V F * L
Sbjct: 429 ESGKTIVASGVIPAGWAPGQTYRSLVNFN*WL 524
Score = 29.9 bits (59), Expect(5) = 1e-036
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2 / +3
Query: 53 CSGNPVTVFITD 88
CSGNPVTV ITD
Sbjct: 18 CSGNPVTVVITD 53
>gb|CV258295.1|CV258295 WS0249.B21_B24 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0249_B24 3', mRNA sequence
Length = 741
Score = 56.5 bits (117), Expect(5) = 3e-035
Identities = 19/40 (47%), Positives = 30/40 (75%)
Frame = +2 / -1
Query: 113 YHFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYP 232
+HFDLSG AFG++A G D+LR+ G++ ++ +RV C +P
Sbjct: 663 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWP 544
Score = 53.3 bits (110), Expect(5) = 3e-035
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +2 / -1
Query: 353 SAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVI 472
S W PM+ SWGA+W++D L+ P SI+LTS K I
Sbjct: 423 SDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLESGKTI 304
Score = 42.3 bits (86), Expect(5) = 3e-035
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +2 / -1
Query: 236 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAE 361
G+ + FH++ G NP Y A +V++ DG++ +E++ L ++
Sbjct: 543 GKTVTFHVDSGSNPYYFATVVEYEDGDGELKSVELKQALDSD 418
Score = 39.1 bits (79), Expect(5) = 3e-035
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2 / -1
Query: 452 ESGKKVIAKDIIPANWRPDAVYTSNVQFY*TL 547
ESGK ++A +IPA W P Y S V F * L
Sbjct: 321 ESGKTIVASGVIPAGWAPGQTYRSLVNFN*WL 226
Score = 29.9 bits (59), Expect(5) = 3e-035
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2 / -1
Query: 53 CSGNPVTVFITD 88
CSGNPVTV ITD
Sbjct: 732 CSGNPVTVVITD 697
>gb|CV270280.1|CV270280 WS0151.B21_J04 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0151_J04 3', mRNA sequence
Length = 913
Score = 57.0 bits (118), Expect(5) = 3e-034
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +2 / -2
Query: 236 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIW 397
G+ I FH+ +G +L++LV+F DGD+ M I++ EW M WGA W
Sbjct: 681 GKNIAFHVNEGSTDYWLSILVEFEDGDGDVGSMHIREAGGTEWLEMNHVWGATW 520
Score = 52.8 bits (109), Expect(5) = 3e-034
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = +2 / -2
Query: 116 HFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYP 232
HFDLSG AFG +A G N +LR+ G + V +RR CKYP
Sbjct: 798 HFDLSGAAFGRMAISGENGQLRNRGEIPVIYRRTPCKYP 682
Score = 43.2 bits (88), Expect(5) = 3e-034
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +2 / -2
Query: 11 CGSCYEVRCKEKPECSGNPVTVFITD 88
CG+CY+VRC +K CS VT+ +TD
Sbjct: 912 CGACYKVRCLDKSICSRRAVTIIVTD 835
Score = 40.5 bits (82), Expect(5) = 3e-034
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2 / -2
Query: 446 TSESGKKVIAKDIIPANWRPDAVYTSNVQFY 538
T +G+ + A+++IP NW P A YTS + F+
Sbjct: 471 TLTTGRTLSAREVIPRNWAPKATYTSRLNFF 379
Score = 24.4 bits (47), Expect(5) = 3e-034
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = +2 / -2
Query: 419 LKGPFSIRLTS 451
LKGPFS++LT+
Sbjct: 501 LKGPFSVKLTT 469
>gb|BU815039.1|BU815039 N036D09 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 767
Score = 56.1 bits (116), Expect(4) = 9e-033
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +2 / +1
Query: 236 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIW 397
G+ I FH+ +G +L++LV+F DGD+ M I++ EW M WGA W
Sbjct: 337 GKNIAFHVNEGSTDYWLSLLVEFEDGDGDVGSMHIREAGGTEWLEMNHVWGATW 498
Score = 53.3 bits (110), Expect(4) = 9e-033
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = +2 / +1
Query: 116 HFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYP 232
HFDLSG AFG +A G N +LR+ G + V +RR CKYP
Sbjct: 220 HFDLSGAAFGRMAISGENGQLRNRGELPVIYRRTPCKYP 336
Score = 49.2 bits (101), Expect(4) = 9e-033
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = +2 / +1
Query: 2 GKGCGSCYEVRCKEKPECSGNPVTVFITD 88
G+GCG+CY+VRC +K CS VT+ +TD
Sbjct: 97 GEGCGACYKVRCLDKSICSRRAVTIIVTD 183
Score = 37.3 bits (75), Expect(4) = 9e-033
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2 / +1
Query: 446 TSESGKKVIAKDIIPANWRPDAVYTSNVQFY 538
T + + + A+++IP NW P A YTS + F+
Sbjct: 547 TLSTRRTLSAREVIPRNWAPKATYTSRLNFF 639
>gb|DT507734.1|DT507734 WS02419.BR_B06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02419_B06 5', mRNA sequence
Length = 772
Score = 56.5 bits (117), Expect(5) = 2e-028
Identities = 19/40 (47%), Positives = 30/40 (75%)
Frame = +2 / +2
Query: 113 YHFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYP 232
+HFDLSG AFG++A G D+LR+ G++ ++ +RV C +P
Sbjct: 452 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWP 571
Score = 40.9 bits (83), Expect(5) = 2e-028
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2 / +1
Query: 353 SAEWKPMKLSWGAIWRMDTAKALKGP 430
S W PM+ SWGA+W++D L+ P
Sbjct: 691 SDSWVPMQKSWGAVWKLDAGSLLRAP 768
Score = 39.1 bits (79), Expect(5) = 2e-028
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +2 / +2
Query: 236 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEI 340
G+ + FH++ G NP Y A +V++ DG++ +E+
Sbjct: 572 GKTVTFHVDSGSNPYYFATVVEYEDGDGELKSVEL 676
Score = 31.3 bits (62), Expect(5) = 2e-028
Identities = 8/12 (66%), Positives = 12/12 (100%)
Frame = +2 / +2
Query: 2 GKGCGSCYEVRC 37
G+GCG+CY+V+C
Sbjct: 326 GQGCGACYQVKC 361
Score = 29.9 bits (59), Expect(5) = 2e-028
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2 / +2
Query: 53 CSGNPVTVFITD 88
CSGNPVTV ITD
Sbjct: 383 CSGNPVTVVITD 418
>gb|BI138921.1|BI138921 F119P23Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 493
Score = 57.0 bits (118), Expect(4) = 6e-026
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +2 / +1
Query: 236 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIW 397
G+ I FH+ +G +L++LV+F DGD+ M I++ EW M WGA W
Sbjct: 184 GKNIAFHVNEGSTDYWLSILVEFEDGDGDVGSMHIREAGGTEWLEMNHVWGATW 345
Score = 50.6 bits (104), Expect(4) = 6e-026
Identities = 21/39 (53%), Positives = 26/39 (66%)
Frame = +2 / +1
Query: 116 HFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYP 232
HFDLSG AFG +A G N +LR+ G + V +RR C YP
Sbjct: 67 HFDLSGAAFGRMAISGENGQLRNRGEIPVIYRRTPCNYP 183
Score = 40.5 bits (82), Expect(4) = 6e-026
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2 / +1
Query: 446 TSESGKKVIAKDIIPANWRPDAVYTSNVQFY 538
T +G+ + A+++IP NW P A YTS + F+
Sbjct: 394 TLTTGRTLSAREVIPRNWTPKATYTSRLNFF 486
Score = 24.4 bits (47), Expect(4) = 6e-026
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = +2 / +1
Query: 419 LKGPFSIRLTS 451
LKGPFS++LT+
Sbjct: 364 LKGPFSVKLTT 396
>gb|CV261587.1|CV261587 WS02017.B21_D05 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02017_D05 3', mRNA sequence
Length = 803
Score = 57.0 bits (118), Expect(4) = 3e-022
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +2 / -1
Query: 236 GQKIVFHIEKGCNPNYLAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIW 397
G+ I FH+ +G +L++LV+F DGD+ M I++ EW M WGA W
Sbjct: 704 GKNIAFHVNEGSTDYWLSILVEFEDGDGDVGSMHIREAGGTEWLEMNHVWGATW 543
Score = 40.5 bits (82), Expect(4) = 3e-022
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2 / -1
Query: 446 TSESGKKVIAKDIIPANWRPDAVYTSNVQFY 538
T +G+ + A+++IP NW P A YTS + F+
Sbjct: 494 TLTTGRTLSAREVIPRNWAPKATYTSRLNFF 402
Score = 37.7 bits (76), Expect(4) = 3e-022
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +2 / -1
Query: 137 AFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYP 232
AFG +A G N +LR+ G + V +RR CKYP
Sbjct: 800 AFGRMAISGENGQLRNRGEIPVIYRRTPCKYP 705
Score = 24.4 bits (47), Expect(4) = 3e-022
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = +2 / -1
Query: 419 LKGPFSIRLTS 451
LKGPFS++LT+
Sbjct: 524 LKGPFSVKLTT 492
>gb|CX654042.1|CX654042 PO02012B10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02012B10 5', mRNA sequence
Length = 639
Score = 57.9 bits (120), Expect(4) = 8e-022
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = +2 / +2
Query: 113 YHFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYP 232
+HFDLSG AFG++A G D+LR+ G++ +E +RV C +P
Sbjct: 431 FHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWP 550
Score = 39.1 bits (79), Expect(4) = 8e-022
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2 / +2
Query: 236 GQKIVFHIEKGCNPNYLAVLVKFVADDGD 322
G+K+ FH++ G NP Y A LV+ DGD
Sbjct: 551 GKKVTFHVDSGSNPYYFATLVE*QHGDGD 637
Score = 31.3 bits (62), Expect(4) = 8e-022
Identities = 8/12 (66%), Positives = 12/12 (100%)
Frame = +2 / +2
Query: 2 GKGCGSCYEVRC 37
G+GCG+CY+V+C
Sbjct: 305 GQGCGACYQVKC 340
Score = 29.9 bits (59), Expect(4) = 8e-022
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2 / +2
Query: 53 CSGNPVTVFITD 88
CSGNPVTV ITD
Sbjct: 362 CSGNPVTVVITD 397
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 421,809,040
Number of Sequences: 369679
Number of extensions: 6211674
Number of successful extensions: 58990
Number of sequences better than 1.0e-020: 15
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 10347450540
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)