TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131572.2.6
(1100 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT476355.1|DT476355 WS01229.B21_E11 PT-GT-FL-A-3 Populus... 66 3e-023
gb|CK096481.1|CK096481 UB15CPH11.3pR Populus active cambium... 63 1e-022
gb|CV280707.1|CV280707 WS0137.B21_G07 PTxD-IL-FL-A-4 Populu... 64 3e-022
gb|CV280517.1|CV280517 WS0136.B21_J20 PTxD-IL-FL-A-4 Populu... 64 3e-022
gb|CV235235.1|CV235235 WS01218.B21_E23 PT-GT-FL-A-3 Populus... 66 6e-022
gb|DT504273.1|DT504273 WS01312.B21_L07 PTxD-IL-FL-A-4 Popul... 64 8e-021
>gb|DT476355.1|DT476355 WS01229.B21_E11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_E11 3', mRNA sequence
Length = 887
Score = 65.7 bits (137), Expect(3) = 3e-023
Identities = 27/54 (50%), Positives = 34/54 (62%)
Frame = +2 / -2
Query: 638 LETQLLMDIGMMTMTKGRQHDEKEWRQLFTKAGFSEYKILKEFGTRVAFEVYP* 799
+ETQL D+ MM + G + +EKEW +LF AGF YKI GTR E+YP*
Sbjct: 385 IETQLFFDLQMMVVVGGMERNEKEWAKLFFDAGFLNYKIHPVLGTRALIELYP* 224
Score = 51.5 bits (106), Expect(3) = 3e-023
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +2 / -2
Query: 443 INYVEGDMFSFIPPAQTXXXXXXXXXXTDEECVKLLAQCRKAIPSR 580
+ YV GDMF +PPA+ +DE+CVK+L +C++AI S+
Sbjct: 595 LKYVAGDMFQAVPPAEAILLKWMLHNWSDEDCVKILKRCKQAIMSK 458
Score = 29.5 bits (58), Expect(3) = 3e-023
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2 / -2
Query: 350 ARAIAKAFPHIKCTVL 397
A+ I +AFPH+ CTVL
Sbjct: 685 AKGITEAFPHMDCTVL 638
>gb|CK096481.1|CK096481 UB15CPH11.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB15CPH11 3', mRNA sequence
Length = 882
Score = 63.4 bits (132), Expect(3) = 1e-022
Identities = 27/54 (50%), Positives = 33/54 (61%)
Frame = +2 / -2
Query: 638 LETQLLMDIGMMTMTKGRQHDEKEWRQLFTKAGFSEYKILKEFGTRVAFEVYP* 799
+ETQLL D+ MM G + +EKEW +LF AGF YKI TR E+YP*
Sbjct: 344 IETQLLFDLHMMVDADGMERNEKEWAKLFFDAGFLNYKIHPVLATRALIELYP* 183
Score = 51.9 bits (107), Expect(3) = 1e-022
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +2 / -2
Query: 443 INYVEGDMFSFIPPAQTXXXXXXXXXXTDEECVKLLAQCRKAIPSR 580
+ YV GDMF +PPA+ +DE+CVK+L +CR+AI S+
Sbjct: 554 LKYVGGDMFQGVPPAEAILLKWILHDWSDEDCVKILKRCRQAIMSK 417
Score = 29.5 bits (58), Expect(3) = 1e-022
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2 / -2
Query: 350 ARAIAKAFPHIKCTV 394
A+ IA+AFPH+ CTV
Sbjct: 644 AKGIAEAFPHMDCTV 600
>gb|CV280707.1|CV280707 WS0137.B21_G07 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0137_G07 3', mRNA sequence
Length = 919
Score = 63.8 bits (133), Expect(3) = 3e-022
Identities = 26/54 (48%), Positives = 33/54 (61%)
Frame = +2 / -2
Query: 638 LETQLLMDIGMMTMTKGRQHDEKEWRQLFTKAGFSEYKILKEFGTRVAFEVYP* 799
+ETQL D+ MM + G + +EKEW +LF AGF YKI G R E+YP*
Sbjct: 318 IETQLFFDLQMMVVAGGMERNEKEWAKLFFDAGFLNYKIYPVLGPRALIELYP* 157
Score = 49.6 bits (102), Expect(3) = 3e-022
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +2 / -2
Query: 443 INYVEGDMFSFIPPAQTXXXXXXXXXXTDEECVKLLAQCRKAIPSR 580
+ +V GDMF +PPA+ +DE+CVK+L +C++AI S+
Sbjct: 528 LKFVAGDMFQAVPPAEAILLKWILHNWSDEDCVKILKRCKQAIMSK 391
Score = 29.5 bits (58), Expect(3) = 3e-022
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2 / -2
Query: 350 ARAIAKAFPHIKCTVL 397
A+ I +AFPH+ CTVL
Sbjct: 618 AKGITEAFPHMDCTVL 571
>gb|CV280517.1|CV280517 WS0136.B21_J20 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0136_J20 3', mRNA sequence
Length = 893
Score = 63.8 bits (133), Expect(3) = 3e-022
Identities = 26/54 (48%), Positives = 33/54 (61%)
Frame = +2 / -2
Query: 638 LETQLLMDIGMMTMTKGRQHDEKEWRQLFTKAGFSEYKILKEFGTRVAFEVYP* 799
+ETQL D+ MM + G + +EKEW +LF AGF YKI G R E+YP*
Sbjct: 310 IETQLFFDLQMMVVAGGMERNEKEWAKLFFDAGFLNYKIYPVLGPRALIELYP* 149
Score = 49.6 bits (102), Expect(3) = 3e-022
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +2 / -2
Query: 443 INYVEGDMFSFIPPAQTXXXXXXXXXXTDEECVKLLAQCRKAIPSR 580
+ +V GDMF +PPA+ +DE+CVK+L +C++AI S+
Sbjct: 520 LKFVAGDMFQAVPPAEAILLKWILHNWSDEDCVKILKRCKQAIMSK 383
Score = 29.5 bits (58), Expect(3) = 3e-022
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2 / -2
Query: 350 ARAIAKAFPHIKCTVL 397
A+ I +AFPH+ CTVL
Sbjct: 610 AKGITEAFPHMDCTVL 563
>gb|CV235235.1|CV235235 WS01218.B21_E23 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01218_E23 3', mRNA sequence
Length = 714
Score = 65.7 bits (137), Expect(3) = 6e-022
Identities = 27/54 (50%), Positives = 34/54 (62%)
Frame = +2 / -1
Query: 638 LETQLLMDIGMMTMTKGRQHDEKEWRQLFTKAGFSEYKILKEFGTRVAFEVYP* 799
+ETQL D+ MM + G + +EKEW +LF AGF YKI GTR E+YP*
Sbjct: 375 IETQLFFDLQMMVVVGGMERNEKEWAKLFFDAGFLNYKIHPVLGTRALIELYP* 214
Score = 51.5 bits (106), Expect(3) = 6e-022
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +2 / -1
Query: 443 INYVEGDMFSFIPPAQTXXXXXXXXXXTDEECVKLLAQCRKAIPSR 580
+ YV GDMF +PPA+ +DE+CVK+L +C++AI S+
Sbjct: 585 LKYVAGDMFQAVPPAEAILLKWMLHNWSDEDCVKILKRCKQAIMSK 448
Score = 24.9 bits (48), Expect(3) = 6e-022
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2 / -1
Query: 350 ARAIAKAFPHIKCTVL 397
A+ I +AFP + CTVL
Sbjct: 675 AKGITEAFPTMDCTVL 628
>gb|DT504273.1|DT504273 WS01312.B21_L07 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01312_L07 3', mRNA sequence
Length = 822
Score = 63.8 bits (133), Expect(3) = 8e-021
Identities = 26/54 (48%), Positives = 33/54 (61%)
Frame = +2 / -1
Query: 638 LETQLLMDIGMMTMTKGRQHDEKEWRQLFTKAGFSEYKILKEFGTRVAFEVYP* 799
+ETQL D+ MM + G + +EKEW +LF AGF YKI G R E+YP*
Sbjct: 339 IETQLFFDLQMMVVAGGMERNEKEWAKLFFDAGFLNYKIYPVLGPRALIELYP* 178
Score = 49.6 bits (102), Expect(3) = 8e-021
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +2 / -1
Query: 443 INYVEGDMFSFIPPAQTXXXXXXXXXXTDEECVKLLAQCRKAIPSR 580
+ +V GDMF +PPA+ +DE+CVK+L +C++AI S+
Sbjct: 549 LKFVAGDMFQAVPPAEAILLKWILHNWSDEDCVKILKRCKQAIMSK 412
Score = 24.9 bits (48), Expect(3) = 8e-021
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2 / -1
Query: 350 ARAIAKAFPHIKCTVL 397
A+ I +AFP + CTVL
Sbjct: 639 AKGITEAFPPMDCTVL 592
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 567,030,932
Number of Sequences: 369679
Number of extensions: 8860243
Number of successful extensions: 58062
Number of sequences better than 1.0e-020: 6
length of database: 67,802,888
effective HSP length: 53
effective length of database: 48,209,901
effective search space used: 15089699013
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)