TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131555.2.3
(622 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT520028.1|DT520028 WS02446.B21.1_G01 PTxD-ICC-N-A-14 Po... 171 4e-042
gb|CV279266.1|CV279266 WS0148.B21_P15 PTxD-IL-A-5 Populus t... 170 7e-042
gb|CV260852.1|CV260852 WS02015.B21_C22 PTxN-IB-N-A-11 Popul... 168 3e-041
gb|DN489752.1|DN489752 T076A08.3pR Populus shoot meristem c... 168 3e-041
gb|CV245418.1|CV245418 WS0257.B21_F20 PT-MB-N-A-15 Populus ... 101 1e-034
gb|CV273681.1|CV273681 WS01711.B21_N04 PTxD-NR-A-8 Populus ... 127 4e-029
gb|CX178853.1|CX178853 D05_45-4_07.ab1 leaf inoculated with... 127 4e-029
gb|DN491423.1|DN491423 UR101TA06.3pR Populus root cDNA libr... 125 2e-028
gb|CV265927.1|CV265927 WS02028.B21_K07 PTxN-IB-N-A-11 Popul... 109 1e-023
gb|DT480386.1|DT480386 WS02528.BR_M02 PT-MB-N-A-15 Populus ... 109 1e-023
gb|CV263391.1|CV263391 WS02021.B21_F18 PTxN-IB-N-A-11 Popul... 109 2e-023
gb|DV466026.1|DV466026 MTUNUL1.P46.D03 NUL Populus fremonti... 103 1e-021
>gb|DT520028.1|DT520028 WS02446.B21.1_G01 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02446_G01 3', mRNA sequence
Length = 838
Score = 171 bits (368), Expect = 4e-042
Identities = 68/119 (57%), Positives = 94/119 (78%)
Frame = -3 / -1
Query: 620 SSKIILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMIN 441
SSK++++ E++EN LRN+VDVRDVA+ALLL YEKPEA GRYIC++H I+ D++
Sbjct: 517 SSKVLIKLLKEGYESLENKLRNLVDVRDVAEALLLVYEKPEAEGRYICTAHEIRTEDLVE 338
Query: 440 ILKTLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYKAFGILN*T 264
L+ +YP+Y YPK+F E+D SSEKLQ+LGWS++P+EE+L D+VESY+ GIL+*T
Sbjct: 337 KLRNIYPNYNYPKSFTEEDEGINLSSEKLQRLGWSYRPLEETLIDSVESYQKTGILD*T 161
>gb|CV279266.1|CV279266 WS0148.B21_P15 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0148_P15 3', mRNA sequence
Length = 764
Score = 170 bits (366), Expect = 7e-042
Identities = 67/119 (56%), Positives = 94/119 (78%)
Frame = -3 / -3
Query: 620 SSKIILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMIN 441
SSK++++ E++EN LRN+VDVRDVA+ALLL YEKPEA GRYIC++H I+ D++
Sbjct: 516 SSKVLIKLLKEGHESLENKLRNLVDVRDVAEALLLVYEKPEAEGRYICTAHEIRTEDLVE 337
Query: 440 ILKTLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYKAFGILN*T 264
L+ +YP+Y YPK+F E++ SSEKLQ+LGWS++P+EE+L D+VESY+ GIL+*T
Sbjct: 336 KLRNIYPNYNYPKSFTEEEEGINLSSEKLQRLGWSYRPLEETLIDSVESYQKTGILD*T 160
>gb|CV260852.1|CV260852 WS02015.B21_C22 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02015_C22 3', mRNA sequence
Length = 895
Score = 168 bits (361), Expect = 3e-041
Identities = 66/119 (55%), Positives = 94/119 (78%)
Frame = -3 / -2
Query: 620 SSKIILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMIN 441
SSK++++ E++EN LRN+VDVRDVA+ALLL YEKPEA GRYIC++H I+ D++
Sbjct: 513 SSKVLIKLLKEGYESLENKLRNLVDVRDVAEALLLVYEKPEAEGRYICTAHEIRTEDLVE 334
Query: 440 ILKTLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYKAFGILN*T 264
L+ +YP+Y YPK+F +++ SSEKLQ+LGWS++P+EE+L D+VESY+ GIL+*T
Sbjct: 333 KLRNIYPNYNYPKSFTDEEEGINLSSEKLQRLGWSYRPLEETLIDSVESYQKTGILD*T 157
>gb|DN489752.1|DN489752 T076A08.3pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T076A08 3', mRNA sequence
Length = 686
Score = 168 bits (361), Expect = 3e-041
Identities = 66/119 (55%), Positives = 94/119 (78%)
Frame = -3 / -2
Query: 620 SSKIILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMIN 441
SSK++++ E++EN LR++VDVRDVA+ALLL YEKPEA GRYIC++H I+ D++
Sbjct: 607 SSKVLIKLLKEGYESLENKLRHLVDVRDVAEALLLVYEKPEAEGRYICTAHEIRTEDLVE 428
Query: 440 ILKTLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYKAFGILN*T 264
L+ +YP+Y YPK+F E++ SSEKLQ+LGWS++P+EE+L D+VESY+ GIL+*T
Sbjct: 427 KLRNIYPNYNYPKSFTEEEEGINLSSEKLQRLGWSYRPLEETLTDSVESYQKTGILD*T 251
>gb|CV245418.1|CV245418 WS0257.B21_F20 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0257_F20 3', mRNA sequence
Length = 662
Score = 101 bits (216), Expect(2) = 1e-034
Identities = 38/60 (63%), Positives = 50/60 (83%)
Frame = -3 / -3
Query: 581 ETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMINILKTLYPSYPYPK 402
E++EN LRN+VDVRDVA+ALLL YEKPEA GRYIC++H I+ D++ L+ +YP+Y YPK
Sbjct: 651 ESLENKLRNLVDVRDVAEALLLVYEKPEAEGRYICTAHEIRTEDLVEKLRNIYPNYNYPK 472
Score = 66.1 bits (138), Expect(2) = 1e-034
Identities = 27/46 (58%), Positives = 37/46 (80%)
Frame = -3 / -2
Query: 401 NFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYKAFGILN*T 264
+F E+D SSEKLQ+LGWS++P+EE+L D+VESY+ GIL+*T
Sbjct: 298 SFTEEDEGINLSSEKLQRLGWSYRPLEETLIDSVESYQKTGILD*T 161
>gb|CV273681.1|CV273681 WS01711.B21_N04 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS01711_N04 3', mRNA sequence
Length = 568
Score = 127 bits (273), Expect = 4e-029
Identities = 58/116 (50%), Positives = 73/116 (62%)
Frame = -3 / -3
Query: 620 SSKIILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMIN 441
SS +L Y ET+++ R+ VDVRD A ALLL YEK EA GRYICSSH I D+
Sbjct: 545 SSLYLLSYLKDGLETLDSGTRSFVDVRDTAKALLLIYEKDEAEGRYICSSHDITTQDLAE 366
Query: 440 ILKTLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYKAFGIL 273
LK +YP Y YPK+F + SSEKL LGW ++ +EESL D V++Y+ G L
Sbjct: 365 KLKAMYPHYNYPKSFSGGMPSMDMSSEKLLNLGWKYRSLEESLVDAVKNYEERGDL 198
>gb|CX178853.1|CX178853 D05_45-4_07.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 576
Score = 127 bits (273), Expect = 4e-029
Identities = 58/116 (50%), Positives = 73/116 (62%)
Frame = -3 / -2
Query: 620 SSKIILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMIN 441
SS +L Y ET+++ R+ VDVRD A ALLL YEK EA GRYICSSH I D+
Sbjct: 560 SSLYLLSYLKDGLETLDSGTRSFVDVRDTAKALLLIYEKDEAEGRYICSSHDITTQDLAE 381
Query: 440 ILKTLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYKAFGIL 273
LK +YP Y YPK+F + SSEKL LGW ++ +EESL D V++Y+ G L
Sbjct: 380 KLKAMYPHYNYPKSFSGGMPSMDMSSEKLLNLGWKYRSLEESLVDAVKNYEERGDL 213
>gb|DN491423.1|DN491423 UR101TA06.3pR Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone UR101TA06 3', mRNA sequence
Length = 686
Score = 125 bits (268), Expect = 2e-028
Identities = 57/116 (49%), Positives = 72/116 (62%)
Frame = -3 / -2
Query: 620 SSKIILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMIN 441
SS +L Y ET+++ R+ VDVRD A ALLL YEK EA GRYICSSH I D+
Sbjct: 487 SSLYLLSYLKDGLETLDSGTRSFVDVRDTAKALLLVYEKDEAEGRYICSSHDITTQDLAE 308
Query: 440 ILKTLYPSYPYPKNFVEDDVNSVYSSEKLQKLGWSFKPIEESLRDTVESYKAFGIL 273
LK +YP Y YPK+F + SSEKL LGW ++ +EESL V++Y+ G L
Sbjct: 307 KLKAMYPHYNYPKSFAGGMPSMDMSSEKLLNLGWKYRSLEESLVAAVKNYEERGDL 140
>gb|CV265927.1|CV265927 WS02028.B21_K07 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02028_K07 3', mRNA sequence
Length = 726
Score = 109 bits (233), Expect = 1e-023
Identities = 41/88 (46%), Positives = 66/88 (75%)
Frame = -3 / -3
Query: 620 SSKIILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMIN 441
S+ ++++ +++EN LR ++DVRDV +ALLLAYE PEA GRYIC++HAI+V D++
Sbjct: 613 STMVLIKILKDGCDSLENKLRPIIDVRDVTEALLLAYETPEAEGRYICTAHAIRVKDLVE 434
Query: 440 ILKTLYPSYPYPKNFVEDDVNSVYSSEK 357
L+++YP+Y YPK+F E++ +V S +
Sbjct: 433 KLRSMYPNYNYPKSFTEEEQEAVMISSE 350
>gb|DT480386.1|DT480386 WS02528.BR_M02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02528_M02 5', mRNA sequence
Length = 839
Score = 109 bits (233), Expect = 1e-023
Identities = 41/88 (46%), Positives = 66/88 (75%)
Frame = -3 / +2
Query: 620 SSKIILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMIN 441
S+ ++++ +++EN LR ++DVRDV +ALLLAYE PEA GRYIC++HAI+V D++
Sbjct: 11 STMVLIKILKDGCDSLENKLRPIIDVRDVTEALLLAYETPEAEGRYICTAHAIRVKDLVE 190
Query: 440 ILKTLYPSYPYPKNFVEDDVNSVYSSEK 357
L+++YP+Y YPK+F E++ +V S +
Sbjct: 191 KLRSMYPNYNYPKSFTEEEQEAVMISSE 274
>gb|CV263391.1|CV263391 WS02021.B21_F18 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02021_F18 3', mRNA sequence
Length = 687
Score = 109 bits (232), Expect = 2e-023
Identities = 41/88 (46%), Positives = 65/88 (73%)
Frame = -3 / -3
Query: 620 SSKIILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMIN 441
S+ ++++ +++EN LR ++DVRDV +ALLLAYE PEA GRYIC++HAI+V D++
Sbjct: 511 STMVLIKILKDGCDSLENKLRPIIDVRDVTEALLLAYETPEAEGRYICTAHAIRVKDLVE 332
Query: 440 ILKTLYPSYPYPKNFVEDDVNSVYSSEK 357
L+++YP+Y YPK+F E++ V S +
Sbjct: 331 KLRSMYPNYNYPKSFTEEEQKKVMISSE 248
>gb|DV466026.1|DV466026 MTUNUL1.P46.D03 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 872
Score = 103 bits (219), Expect = 1e-021
Identities = 38/75 (50%), Positives = 59/75 (78%)
Frame = -3 / +3
Query: 620 SSKIILEYFTGDRETVENILRNMVDVRDVADALLLAYEKPEASGRYICSSHAIKVADMIN 441
S+ ++++ +++EN LR ++DVRDV +ALLLAYE PEA GRYIC++HAI+V D++
Sbjct: 645 STMVLIKILKDGCDSLENKLRPIIDVRDVTEALLLAYETPEAEGRYICTAHAIRVKDLVE 824
Query: 440 ILKTLYPSYPYPKNF 396
L+++YP+Y YPK+F
Sbjct: 825 KLRSMYPNYNYPKSF 869
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 315,546,347
Number of Sequences: 369679
Number of extensions: 4136455
Number of successful extensions: 51689
Number of sequences better than 1.0e-020: 12
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 7587135145
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)