TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.160
(878 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV258912.1|CV258912 WS0201.B21_N14 PTxN-IB-N-A-11 Populu... 273 3e-073
gb|CV259134.1|CV259134 WS02010.B21_H13 PTxN-IB-N-A-11 Popul... 273 3e-073
gb|CV259084.1|CV259084 WS02010.B21_F06 PTxN-IB-N-A-11 Popul... 273 4e-073
gb|CV252157.1|CV252157 WS0119.B21_K09 PT-P-FL-A-2 Populus t... 273 9e-073
gb|CV270514.1|CV270514 WS0152.B21_D05 PTxN-IB-A-6 Populus t... 273 9e-073
gb|CX659729.1|CX659729 PO01013C10 Poplar SC cDNA library Po... 273 9e-073
gb|DT496835.1|DT496835 WS01124.BR_K13 PT-P-FL-A-2 Populus t... 273 9e-073
gb|DT508233.1|DT508233 WS02420.BR_G18 PTxD-ICC-N-A-14 Popul... 273 9e-073
gb|DT512849.1|DT512849 WS02420.B21_G18 PTxD-ICC-N-A-14 Popu... 273 9e-073
gb|BU836666.1|BU836666 T089D07 Populus apical shoot cDNA li... 271 1e-072
gb|DT521067.1|DT521067 WS02033.B21_E24 PTxN-IB-N-A-11 Popul... 268 4e-071
gb|CV240380.1|CV240380 WS0251.B21_D15 PT-MB-N-A-15 Populus ... 266 1e-070
gb|CV260006.1|CV260006 WS02012.B21_O05 PTxN-IB-N-A-11 Popul... 238 4e-062
gb|DT499998.1|DT499998 WS9991.BR_O23 PT-P-FL-A-2 Populus tr... 228 4e-059
gb|CV259381.1|CV259381 WS02011.B21_D09 PTxN-IB-N-A-11 Popul... 222 2e-057
gb|CX659745.1|CX659745 PO01013E07 Poplar SC cDNA library Po... 204 5e-052
gb|CV249584.1|CV249584 WS01124.B21_K13 PT-P-FL-A-2 Populus ... 188 4e-047
gb|CA821924.1|CA821924 R01A11 two-month-old roots from clon... 103 5e-037
gb|CV267465.1|CV267465 WS02031.B21_N05 PTxN-IB-N-A-11 Popul... 116 2e-025
gb|CV230211.1|CV230211 WS01915.B21_M07 PT-DX-N-A-10 Populus... 103 2e-021
>gb|CV258912.1|CV258912 WS0201.B21_N14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0201_N14 3', mRNA sequence
Length = 852
Score = 273 bits (591), Expect(2) = 3e-073
Identities = 113/143 (79%), Positives = 131/143 (91%)
Frame = -3 / -1
Query: 807 EKKASVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAG 628
EKK +L IAKPLAGKKLCKRTLKLVR+ASE+KCLKRGVKEVVKSIRRG+KGLC+IAG
Sbjct: 591 EKKKITSLAPIAKPLAGKKLCKRTLKLVRKASESKCLKRGVKEVVKSIRRGHKGLCIIAG 412
Query: 627 NISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVK 448
NISPIDVITHVPILCEE+++PYVYV SKEDLA+AG TKRPTCCVLVLTKP KGE+ E +
Sbjct: 411 NISPIDVITHVPILCEESDIPYVYVTSKEDLASAGATKRPTCCVLVLTKPTKGEIGKEDQ 232
Query: 447 DKLKSDYDQVVTEVAEATSAMF* 379
+KLK+DYDQVV++V+E TS++F*
Sbjct: 231 EKLKADYDQVVSDVSELTSSLF* 163
Score = 164 bits (353), Expect = 6e-040
Identities = 74/118 (62%), Positives = 86/118 (72%)
Frame = +2 / +2
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GLV T+TQQVGLLV PA+ARSS + T T*G SSH +GT V+TSIGE+FPAI HNPL+P
Sbjct: 263 GLVNTRTQQVGLLVAPALARSSLEVT*T*GMSDSSHKMGT*VMTSIGEMFPAIMHNPLWP 442
Query: 659 RRMLLTTSLTPRLRHFASEARRTSLRVRLQSFFPARGFAMDISATEAFFSVSVSLPIA 832
RRML TTS TP +HF S+A RTS RVRLQSF PA+G AM FFS L ++
Sbjct: 443 RRMLFTTSFTPLFKHFDSDALRTSFRVRLQSFLPAKGLAMGAKLVIFFFSFMFDLSVS 616
Score = 22.6 bits (43), Expect(2) = 3e-073
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3 / -1
Query: 849 RSKAAAAMGSDTETEK 802
+ K MGSD+ETE+
Sbjct: 651 KKKRQTEMGSDSETER 604
>gb|CV259134.1|CV259134 WS02010.B21_H13 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02010_H13 3', mRNA sequence
Length = 725
Score = 273 bits (591), Expect(2) = 3e-073
Identities = 113/143 (79%), Positives = 131/143 (91%)
Frame = -3 / -2
Query: 807 EKKASVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAG 628
EKK +L IAKPLAGKKLCKRTLKLVR+ASE+KCLKRGVKEVVKSIRRG+KGLC+IAG
Sbjct: 592 EKKKITSLAPIAKPLAGKKLCKRTLKLVRKASESKCLKRGVKEVVKSIRRGHKGLCIIAG 413
Query: 627 NISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVK 448
NISPIDVITHVPILCEE+++PYVYV SKEDLA+AG TKRPTCCVLVLTKP KGE+ E +
Sbjct: 412 NISPIDVITHVPILCEESDIPYVYVTSKEDLASAGATKRPTCCVLVLTKPTKGEIGKEDQ 233
Query: 447 DKLKSDYDQVVTEVAEATSAMF* 379
+KLK+DYDQVV++V+E TS++F*
Sbjct: 232 EKLKADYDQVVSDVSELTSSLF* 164
Score = 164 bits (353), Expect = 6e-040
Identities = 74/118 (62%), Positives = 86/118 (72%)
Frame = +2 / +3
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GLV T+TQQVGLLV PA+ARSS + T T*G SSH +GT V+TSIGE+FPAI HNPL+P
Sbjct: 264 GLVNTRTQQVGLLVAPALARSSLEVT*T*GMSDSSHKMGT*VMTSIGEMFPAIMHNPLWP 443
Query: 659 RRMLLTTSLTPRLRHFASEARRTSLRVRLQSFFPARGFAMDISATEAFFSVSVSLPIA 832
RRML TTS TP +HF S+A RTS RVRLQSF PA+G AM FFS L ++
Sbjct: 444 RRMLFTTSFTPLFKHFDSDALRTSFRVRLQSFLPAKGLAMGAKLVIFFFSFMFDLSVS 617
Score = 22.6 bits (43), Expect(2) = 3e-073
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3 / -2
Query: 849 RSKAAAAMGSDTETEK 802
+ K MGSD+ETE+
Sbjct: 652 KKKRQTEMGSDSETER 605
>gb|CV259084.1|CV259084 WS02010.B21_F06 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02010_F06 3', mRNA sequence
Length = 663
Score = 273 bits (591), Expect(2) = 4e-073
Identities = 113/143 (79%), Positives = 131/143 (91%)
Frame = -3 / -1
Query: 807 EKKASVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAG 628
EKK +L IAKPLAGKKLCKRTLKLVR+ASE+KCLKRGVKEVVKSIRRG+KGLC+IAG
Sbjct: 618 EKKKITSLAPIAKPLAGKKLCKRTLKLVRKASESKCLKRGVKEVVKSIRRGHKGLCIIAG 439
Query: 627 NISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVK 448
NISPIDVITHVPILCEE+++PYVYV SKEDLA+AG TKRPTCCVLVLTKP KGE+ E +
Sbjct: 438 NISPIDVITHVPILCEESDIPYVYVTSKEDLASAGATKRPTCCVLVLTKPTKGEIGKEDQ 259
Query: 447 DKLKSDYDQVVTEVAEATSAMF* 379
+KLK+DYDQVV++V+E TS++F*
Sbjct: 258 EKLKADYDQVVSDVSELTSSLF* 190
Score = 164 bits (353), Expect = 6e-040
Identities = 74/118 (62%), Positives = 86/118 (72%)
Frame = +2 / +2
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GLV T+TQQVGLLV PA+ARSS + T T*G SSH +GT V+TSIGE+FPAI HNPL+P
Sbjct: 290 GLVNTRTQQVGLLVAPALARSSLEVT*T*GMSDSSHKMGT*VMTSIGEMFPAIMHNPLWP 469
Query: 659 RRMLLTTSLTPRLRHFASEARRTSLRVRLQSFFPARGFAMDISATEAFFSVSVSLPIA 832
RRML TTS TP +HF S+A RTS RVRLQSF PA+G AM FFS L ++
Sbjct: 470 RRMLFTTSFTPLFKHFDSDALRTSFRVRLQSFLPAKGLAMGAKLVIFFFSFMFDLSVS 643
Score = 22.1 bits (42), Expect(2) = 4e-073
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -3 / -1
Query: 834 AAMGSDTETEK 802
A MGSD+ETE+
Sbjct: 663 AEMGSDSETER 631
>gb|CV252157.1|CV252157 WS0119.B21_K09 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0119_K09 3', mRNA sequence
Length = 658
Score = 273 bits (591), Expect = 9e-073
Identities = 113/143 (79%), Positives = 131/143 (91%)
Frame = -3 / -2
Query: 807 EKKASVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAG 628
EKK +L IAKPLAGKKLCKRTLKLVR+ASE+KCLKRGVKEVVKSIRRG+KGLC+IAG
Sbjct: 615 EKKKITSLAPIAKPLAGKKLCKRTLKLVRKASESKCLKRGVKEVVKSIRRGHKGLCIIAG 436
Query: 627 NISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVK 448
NISPIDVITHVPILCEE+++PYVYV SKEDLA+AG TKRPTCCVLVLTKP KGE+ E +
Sbjct: 435 NISPIDVITHVPILCEESDIPYVYVTSKEDLASAGATKRPTCCVLVLTKPTKGEIGKEDQ 256
Query: 447 DKLKSDYDQVVTEVAEATSAMF* 379
+KLK+DYDQVV++V+E TS++F*
Sbjct: 255 EKLKADYDQVVSDVSELTSSLF* 187
Score = 164 bits (353), Expect = 6e-040
Identities = 74/118 (62%), Positives = 86/118 (72%)
Frame = +2 / +2
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GLV T+TQQVGLLV PA+ARSS + T T*G SSH +GT V+TSIGE+FPAI HNPL+P
Sbjct: 287 GLVNTRTQQVGLLVAPALARSSLEVT*T*GMSDSSHKMGT*VMTSIGEMFPAIMHNPLWP 466
Query: 659 RRMLLTTSLTPRLRHFASEARRTSLRVRLQSFFPARGFAMDISATEAFFSVSVSLPIA 832
RRML TTS TP +HF S+A RTS RVRLQSF PA+G AM FFS L ++
Sbjct: 467 RRMLFTTSFTPLFKHFDSDALRTSFRVRLQSFLPAKGLAMGAKLVIFFFSFMFDLSVS 640
>gb|CV270514.1|CV270514 WS0152.B21_D05 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0152_D05 3', mRNA sequence
Length = 694
Score = 273 bits (591), Expect = 9e-073
Identities = 113/143 (79%), Positives = 131/143 (91%)
Frame = -3 / -2
Query: 807 EKKASVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAG 628
EKK +L IAKPLAGKKLCKRTLKLVR+ASE+KCLKRGVKEVVKSIRRG+KGLC+IAG
Sbjct: 615 EKKKITSLAPIAKPLAGKKLCKRTLKLVRKASESKCLKRGVKEVVKSIRRGHKGLCIIAG 436
Query: 627 NISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVK 448
NISPIDVITHVPILCEE+++PYVYV SKEDLA+AG TKRPTCCVLVLTKP KGE+ E +
Sbjct: 435 NISPIDVITHVPILCEESDIPYVYVTSKEDLASAGATKRPTCCVLVLTKPTKGEIGKEDQ 256
Query: 447 DKLKSDYDQVVTEVAEATSAMF* 379
+KLK+DYDQVV++V+E TS++F*
Sbjct: 255 EKLKADYDQVVSDVSELTSSLF* 187
Score = 166 bits (356), Expect(2) = 2e-040
Identities = 75/118 (63%), Positives = 87/118 (73%)
Frame = +2 / +2
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GLV T+TQQVGLLV PA+ARSS + T T*G SSH +GT V+TSIGE+FPAI HNPL+P
Sbjct: 287 GLVNTRTQQVGLLVAPALARSSLEVT*T*GMSDSSHKMGT*VMTSIGEMFPAIMHNPLWP 466
Query: 659 RRMLLTTSLTPRLRHFASEARRTSLRVRLQSFFPARGFAMDISATEAFFSVSVSLPIA 832
RRML TTS TP +HF S+A RTSLRVRLQSF PA+G AM FFS L ++
Sbjct: 467 RRMLFTTSFTPLFKHFDSDALRTSLRVRLQSFLPAKGLAMGARLVIFFFSFMFDLSVS 640
Score = 23.1 bits (44), Expect(2) = 2e-040
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2 / +3
Query: 2 FFFFFWKPKTNLDIR 46
FFFFFW + L I+
Sbjct: 3 FFFFFWLNRILLHIK 47
>gb|CX659729.1|CX659729 PO01013C10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01013C10 5', mRNA sequence
Length = 665
Score = 273 bits (591), Expect = 9e-073
Identities = 113/143 (79%), Positives = 131/143 (91%)
Frame = -3 / +2
Query: 807 EKKASVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAG 628
EKK +L IAKPLAGKKLCKRTLKLVR+ASE+KCLKRGVKEVVKSIRRG+KGLC+IAG
Sbjct: 68 EKKKITSLAPIAKPLAGKKLCKRTLKLVRKASESKCLKRGVKEVVKSIRRGHKGLCIIAG 247
Query: 627 NISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVK 448
NISPIDVITHVPILCEE+++PYVYV SKEDLA+AG TKRPTCCVLVLTKP KGE+ E +
Sbjct: 248 NISPIDVITHVPILCEESDIPYVYVTSKEDLASAGATKRPTCCVLVLTKPTKGEIGKEDQ 427
Query: 447 DKLKSDYDQVVTEVAEATSAMF* 379
+KLK+DYDQVV++V+E TS++F*
Sbjct: 428 EKLKADYDQVVSDVSELTSSLF* 496
Score = 166 bits (356), Expect = 2e-040
Identities = 75/118 (63%), Positives = 87/118 (73%)
Frame = +2 / -3
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GLV T+TQQVGLLV PA+ARSS + T T*G SSH +GT V+TSIGE+FPAI HNPL+P
Sbjct: 396 GLVNTRTQQVGLLVAPALARSSLEVT*T*GMSDSSHRMGT*VMTSIGEMFPAIMHNPLWP 217
Query: 659 RRMLLTTSLTPRLRHFASEARRTSLRVRLQSFFPARGFAMDISATEAFFSVSVSLPIA 832
RRML TTS TP +HF S+A RTSLRVRLQSF PA+G AM FFS L ++
Sbjct: 216 RRMLFTTSFTPLFKHFDSDALRTSLRVRLQSFLPAKGLAMGAKLVIFFFSFMFDLSVS 43
>gb|DT496835.1|DT496835 WS01124.BR_K13 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01124_K13 5', mRNA sequence
Length = 698
Score = 273 bits (591), Expect = 9e-073
Identities = 113/143 (79%), Positives = 131/143 (91%)
Frame = -3 / +3
Query: 807 EKKASVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAG 628
EKK +L IAKPLAGKKLCKRTLKLVR+ASE+KCLKRGVKEVVKSIRRG+KGLC+IAG
Sbjct: 99 EKKKITSLAPIAKPLAGKKLCKRTLKLVRKASESKCLKRGVKEVVKSIRRGHKGLCIIAG 278
Query: 627 NISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVK 448
NISPIDVITHVPILCEE+++PYVYV SKEDLA+AG TKRPTCCVLVLTKP KGE+ E +
Sbjct: 279 NISPIDVITHVPILCEESDIPYVYVTSKEDLASAGATKRPTCCVLVLTKPTKGEIGKEDQ 458
Query: 447 DKLKSDYDQVVTEVAEATSAMF* 379
+KLK+DYDQVV++V+E TS++F*
Sbjct: 459 EKLKADYDQVVSDVSELTSSLF* 527
Score = 164 bits (353), Expect = 6e-040
Identities = 74/118 (62%), Positives = 86/118 (72%)
Frame = +2 / -2
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GLV T+TQQVGLLV PA+ARSS + T T*G SSH +GT V+TSIGE+FPAI HNPL+P
Sbjct: 427 GLVNTRTQQVGLLVAPALARSSLEVT*T*GMSDSSHKMGT*VMTSIGEMFPAIMHNPLWP 248
Query: 659 RRMLLTTSLTPRLRHFASEARRTSLRVRLQSFFPARGFAMDISATEAFFSVSVSLPIA 832
RRML TTS TP +HF S+A RTS RVRLQSF PA+G AM FFS L ++
Sbjct: 247 RRMLFTTSFTPLFKHFDSDALRTSFRVRLQSFLPAKGLAMGAKLVIFFFSFMFDLSVS 74
>gb|DT508233.1|DT508233 WS02420.BR_G18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_G18 5', mRNA sequence
Length = 709
Score = 273 bits (591), Expect = 9e-073
Identities = 113/143 (79%), Positives = 131/143 (91%)
Frame = -3 / +3
Query: 807 EKKASVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAG 628
EKK +L IAKPLAGKKLCKRTLKLVR+ASE+KCLKRGVKEVVKSIRRG+KGLC+IAG
Sbjct: 78 EKKKITSLAPIAKPLAGKKLCKRTLKLVRKASESKCLKRGVKEVVKSIRRGHKGLCIIAG 257
Query: 627 NISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVK 448
NISPIDVITHVPILCEE+++PYVYV SKEDLA+AG TKRPTCCVLVLTKP KGE+ E +
Sbjct: 258 NISPIDVITHVPILCEESDIPYVYVTSKEDLASAGATKRPTCCVLVLTKPTKGEIGKEDQ 437
Query: 447 DKLKSDYDQVVTEVAEATSAMF* 379
+KLK+DYDQVV++V+E TS++F*
Sbjct: 438 EKLKADYDQVVSDVSELTSSLF* 506
Score = 166 bits (357), Expect = 2e-040
Identities = 75/118 (63%), Positives = 87/118 (73%)
Frame = +2 / -1
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GLV T+TQQVGLLV PA+ARSS + T T*G SSH +GT V+TSIGE+FPAI HNPL+P
Sbjct: 406 GLVNTRTQQVGLLVAPALARSSLEVT*T*GMSDSSHKMGT*VMTSIGEMFPAIMHNPLWP 227
Query: 659 RRMLLTTSLTPRLRHFASEARRTSLRVRLQSFFPARGFAMDISATEAFFSVSVSLPIA 832
RRML TTS TP +HF S+A RTSLRVRLQSF PA+G AM FFS L ++
Sbjct: 226 RRMLFTTSFTPLFKHFDSDALRTSLRVRLQSFLPAKGLAMGAKLVIFFFSFMFDLSVS 53
>gb|DT512849.1|DT512849 WS02420.B21_G18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_G18 3', mRNA sequence
Length = 709
Score = 273 bits (591), Expect = 9e-073
Identities = 113/143 (79%), Positives = 131/143 (91%)
Frame = -3 / -3
Query: 807 EKKASVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAG 628
EKK +L IAKPLAGKKLCKRTLKLVR+ASE+KCLKRGVKEVVKSIRRG+KGLC+IAG
Sbjct: 632 EKKKITSLAPIAKPLAGKKLCKRTLKLVRKASESKCLKRGVKEVVKSIRRGHKGLCIIAG 453
Query: 627 NISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVK 448
NISPIDVITHVPILCEE+++PYVYV SKEDLA+AG TKRPTCCVLVLTKP KGE+ E +
Sbjct: 452 NISPIDVITHVPILCEESDIPYVYVTSKEDLASAGATKRPTCCVLVLTKPTKGEIGKEDQ 273
Query: 447 DKLKSDYDQVVTEVAEATSAMF* 379
+KLK+DYDQVV++V+E TS++F*
Sbjct: 272 EKLKADYDQVVSDVSELTSSLF* 204
Score = 166 bits (357), Expect = 2e-040
Identities = 75/118 (63%), Positives = 87/118 (73%)
Frame = +2 / +1
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GLV T+TQQVGLLV PA+ARSS + T T*G SSH +GT V+TSIGE+FPAI HNPL+P
Sbjct: 304 GLVNTRTQQVGLLVAPALARSSLEVT*T*GMSDSSHKMGT*VMTSIGEMFPAIMHNPLWP 483
Query: 659 RRMLLTTSLTPRLRHFASEARRTSLRVRLQSFFPARGFAMDISATEAFFSVSVSLPIA 832
RRML TTS TP +HF S+A RTSLRVRLQSF PA+G AM FFS L ++
Sbjct: 484 RRMLFTTSFTPLFKHFDSDALRTSLRVRLQSFLPAKGLAMGAKLVIFFFSFMFDLSVS 657
>gb|BU836666.1|BU836666 T089D07 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 620
Score = 271 bits (587), Expect(2) = 1e-072
Identities = 112/143 (78%), Positives = 131/143 (91%)
Frame = -3 / +1
Query: 807 EKKASVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAG 628
EKK +L IAKPLAGKKLCKRTLKLVR+ASE+KCLKRGVKEVV+SIRRG+KGLC+IAG
Sbjct: 55 EKKNITSLAPIAKPLAGKKLCKRTLKLVRKASESKCLKRGVKEVVRSIRRGHKGLCIIAG 234
Query: 627 NISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVK 448
NISPIDVITHVPILCEE+++PYVYV SKEDLA+AG TKRPTCCVLVLTKP KGE+ E +
Sbjct: 235 NISPIDVITHVPILCEESDIPYVYVTSKEDLASAGATKRPTCCVLVLTKPTKGEIGKEDQ 414
Query: 447 DKLKSDYDQVVTEVAEATSAMF* 379
+KLK+DYDQVV++V+E TS++F*
Sbjct: 415 EKLKADYDQVVSDVSELTSSLF* 483
Score = 167 bits (360), Expect = 7e-041
Identities = 76/118 (64%), Positives = 88/118 (74%)
Frame = +2 / -1
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GLV T+TQQVGLLV PA+ARSS + T T*G SSH +GT V+TSIGE+FPAI HNPL+P
Sbjct: 383 GLVNTRTQQVGLLVAPALARSSLEVT*T*GMSDSSHRMGT*VMTSIGEMFPAIMHNPLWP 204
Query: 659 RRMLLTTSLTPRLRHFASEARRTSLRVRLQSFFPARGFAMDISATEAFFSVSVSLPIA 832
RRMLLTTS TP +HF S+A RTSLRVRLQSF PA+G AM FFS L ++
Sbjct: 203 RRMLLTTSFTPLFKHFDSDALRTSLRVRLQSFLPAKGLAMGAKLVIFFFSFMFDLSVS 30
Score = 22.1 bits (42), Expect(2) = 1e-072
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -3 / +1
Query: 834 AAMGSDTETEK 802
A MGSD+ETE+
Sbjct: 10 AEMGSDSETER 42
>gb|DT521067.1|DT521067 WS02033.B21_E24 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02033_E24 3', mRNA sequence
Length = 583
Score = 268 bits (579), Expect = 4e-071
Identities = 110/137 (80%), Positives = 128/137 (93%)
Frame = -3 / -1
Query: 789 ALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPID 610
+L IAKPLAGKKLCKRTLKLVR+ASE+KCLKRGVKEVVKSIRRG+KGLC+IAGNISPID
Sbjct: 574 SLAPIAKPLAGKKLCKRTLKLVRKASESKCLKRGVKEVVKSIRRGHKGLCIIAGNISPID 395
Query: 609 VITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVKDKLKSD 430
VITHVPILCEE+++PYVYV SKEDLA+AG TKRPTCCVLVLTKP KGE+ E ++KLK+D
Sbjct: 394 VITHVPILCEESDIPYVYVTSKEDLASAGATKRPTCCVLVLTKPTKGEIGKEDQEKLKAD 215
Query: 429 YDQVVTEVAEATSAMF* 379
YDQVV++V+E TS++F*
Sbjct: 214 YDQVVSDVSELTSSLF* 164
Score = 159 bits (341), Expect(2) = 2e-038
Identities = 70/100 (70%), Positives = 80/100 (80%)
Frame = +2 / +3
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GLV T+TQQVGLLV PA+ARSS + T T*G SSH +GT V+TSIGE+FPAI HNPL+P
Sbjct: 264 GLVNTRTQQVGLLVAPALARSSLEVT*T*GMSDSSHKMGT*VMTSIGEMFPAIMHNPLWP 443
Query: 659 RRMLLTTSLTPRLRHFASEARRTSLRVRLQSFFPARGFAM 778
RRML TTS TP +HF S+A RTS RVRLQSF PA+G AM
Sbjct: 444 RRMLFTTSFTPLFKHFDSDALRTSFRVRLQSFLPAKGLAM 563
Score = 22.6 bits (43), Expect(2) = 2e-038
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +2 / +1
Query: 2 FFFFFWKP 25
FFFFF+KP
Sbjct: 1 FFFFFFKP 24
>gb|CV240380.1|CV240380 WS0251.B21_D15 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0251_D15 3', mRNA sequence
Length = 492
Score = 266 bits (576), Expect = 1e-070
Identities = 109/133 (81%), Positives = 126/133 (94%)
Frame = -3 / -3
Query: 777 IAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITH 598
IAKPLAGKKLCKRTLKLVR+ASE+KCLKRGVKEVVKSIRRG+KGLC+IAGNISPIDVITH
Sbjct: 490 IAKPLAGKKLCKRTLKLVRKASESKCLKRGVKEVVKSIRRGHKGLCIIAGNISPIDVITH 311
Query: 597 VPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVKDKLKSDYDQV 418
VPILCEE+++PYVYV SKEDLA+AG TKRPTCCVLVLTKP KGE+ E ++KLK+DYDQV
Sbjct: 310 VPILCEESDIPYVYVTSKEDLASAGATKRPTCCVLVLTKPTKGEIGKEDQEKLKADYDQV 131
Query: 417 VTEVAEATSAMF* 379
V++V+E TS++F*
Sbjct: 130 VSDVSELTSSLF* 92
Score = 160 bits (345), Expect = 8e-039
Identities = 71/100 (71%), Positives = 81/100 (81%)
Frame = +2 / +3
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GLV T+TQQVGLLV PA+ARSS + T T*G SSH +GT V+TSIGE+FPAI HNPL+P
Sbjct: 192 GLVNTRTQQVGLLVAPALARSSLEVT*T*GMSDSSHKMGT*VMTSIGEMFPAIMHNPLWP 371
Query: 659 RRMLLTTSLTPRLRHFASEARRTSLRVRLQSFFPARGFAM 778
RRML TTS TP +HF S+A RTSLRVRLQSF PA+G AM
Sbjct: 372 RRMLFTTSFTPLFKHFDSDALRTSLRVRLQSFLPAKGLAM 491
>gb|CV260006.1|CV260006 WS02012.B21_O05 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02012_O05 3', mRNA sequence
Length = 551
Score = 238 bits (514), Expect = 4e-062
Identities = 97/121 (80%), Positives = 114/121 (94%)
Frame = -3 / -2
Query: 741 RTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANVPY 562
RTLKLVR+ASE+KCLKRGVKEVVKSIRRG+KGLC+IAGNISPIDVITHVPILCEE+++PY
Sbjct: 550 RTLKLVRKASESKCLKRGVKEVVKSIRRGHKGLCIIAGNISPIDVITHVPILCEESDIPY 371
Query: 561 VYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVKDKLKSDYDQVVTEVAEATSAMF 382
VYV SKEDLA+AG TKRPTCCVLVLTKP KGE+ E ++KLK+DYDQVV++V+E TS++F
Sbjct: 370 VYVTSKEDLASAGATKRPTCCVLVLTKPTKGEIGKEDQEKLKADYDQVVSDVSELTSSLF 191
Query: 381 * 379
*
Sbjct: 190 * 188
Score = 139 bits (298), Expect = 2e-032
Identities = 62/88 (70%), Positives = 71/88 (80%)
Frame = +2 / +3
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GLV T+TQQVGLLV PA+ARSS + T T*G SSH +GT V+TSIGE+FPAI HNPL+P
Sbjct: 288 GLVNTRTQQVGLLVAPALARSSLEVT*T*GMSDSSHKMGT*VMTSIGEMFPAIMHNPLWP 467
Query: 659 RRMLLTTSLTPRLRHFASEARRTSLRVR 742
RRML TTS TP +HF S+A RTSLRVR
Sbjct: 468 RRMLFTTSFTPLFKHFDSDALRTSLRVR 551
>gb|DT499998.1|DT499998 WS9991.BR_O23 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0119_K09
5', mRNA sequence
Length = 429
Score = 228 bits (492), Expect = 4e-059
Identities = 94/110 (85%), Positives = 103/110 (93%)
Frame = -3 / +3
Query: 807 EKKASVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAG 628
EKK +L IAKPLAGKKLCKRTLKLVR+ASE+KCLKRGVKEVVKSIRRG+KGLC+IAG
Sbjct: 99 EKKKITSLAPIAKPLAGKKLCKRTLKLVRKASESKCLKRGVKEVVKSIRRGHKGLCIIAG 278
Query: 627 NISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKP 478
NISPIDVITHVPILCEE+++PYVYV SKEDLA+AG TKRPTCCVLVLTKP
Sbjct: 279 NISPIDVITHVPILCEESDIPYVYVTSKEDLASAGATKRPTCCVLVLTKP 428
Score = 164 bits (353), Expect = 6e-040
Identities = 74/118 (62%), Positives = 86/118 (72%)
Frame = +2 / -3
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GLV T+TQQVGLLV PA+ARSS + T T*G SSH +GT V+TSIGE+FPAI HNPL+P
Sbjct: 427 GLVNTRTQQVGLLVAPALARSSLEVT*T*GMSDSSHKMGT*VMTSIGEMFPAIMHNPLWP 248
Query: 659 RRMLLTTSLTPRLRHFASEARRTSLRVRLQSFFPARGFAMDISATEAFFSVSVSLPIA 832
RRML TTS TP +HF S+A RTS RVRLQSF PA+G AM FFS L ++
Sbjct: 247 RRMLFTTSFTPLFKHFDSDALRTSFRVRLQSFLPAKGLAMGAKLVIFFFSFMFDLSVS 74
>gb|CV259381.1|CV259381 WS02011.B21_D09 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02011_D09 3', mRNA sequence
Length = 530
Score = 222 bits (480), Expect = 2e-057
Identities = 90/113 (79%), Positives = 106/113 (93%)
Frame = -3 / -1
Query: 717 ASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANVPYVYVPSKED 538
ASE+KCLKRGVKEVVKSIRRG+KGLC+IAGNISPIDVITHVPILCEE+++PYVYV SKED
Sbjct: 527 ASESKCLKRGVKEVVKSIRRGHKGLCIIAGNISPIDVITHVPILCEESDIPYVYVTSKED 348
Query: 537 LATAGTTKRPTCCVLVLTKPNKGELSGEVKDKLKSDYDQVVTEVAEATSAMF* 379
LA+AG TKRPTCCVLVLTKP KGE+ E ++KLK+DYDQVV++V+E TS++F*
Sbjct: 347 LASAGATKRPTCCVLVLTKPTKGEIGKEDQEKLKADYDQVVSDVSELTSSLF* 189
Score = 125 bits (268), Expect = 3e-028
Identities = 55/80 (68%), Positives = 64/80 (80%)
Frame = +2 / +1
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GLV T+TQQVGLLV PA+ARSS + T T*G SSH +GT V+TSIGE+FPAI HNPL+P
Sbjct: 289 GLVNTRTQQVGLLVAPALARSSLEVT*T*GMSDSSHKMGT*VMTSIGEMFPAIMHNPLWP 468
Query: 659 RRMLLTTSLTPRLRHFASEA 718
RRML TTS TP +HF S+A
Sbjct: 469 RRMLFTTSFTPLFKHFDSDA 528
>gb|CX659745.1|CX659745 PO01013E07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01013E07 5', mRNA sequence
Length = 372
Score = 204 bits (441), Expect = 5e-052
Identities = 85/101 (84%), Positives = 94/101 (93%)
Frame = -3 / +2
Query: 807 EKKASVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAG 628
EKK +L IAKPLAGKKLCKRTLKLVR+ASE+KCLKRGVKEVVKSIRRG+KGLC+IAG
Sbjct: 68 EKKKITSLAPIAKPLAGKKLCKRTLKLVRKASESKCLKRGVKEVVKSIRRGHKGLCIIAG 247
Query: 627 NISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPT 505
NISPIDVITHVPILCEE+++PYVYV SKEDLA+AG TKRPT
Sbjct: 248 NISPIDVITHVPILCEESDIPYVYVTSKEDLASAGATKRPT 370
Score = 151 bits (325), Expect = 5e-036
Identities = 69/110 (62%), Positives = 80/110 (72%)
Frame = +2 / -1
Query: 503 QVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFPRRMLLTTS 682
QVGLLV PA+ARSS + T T*G SSH +GT V+TSIGE+FPAI HNPL+PRRML TTS
Sbjct: 372 QVGLLVAPALARSSLEVT*T*GMSDSSHRMGT*VMTSIGEMFPAIMHNPLWPRRMLFTTS 193
Query: 683 LTPRLRHFASEARRTSLRVRLQSFFPARGFAMDISATEAFFSVSVSLPIA 832
TP +HF S+A RTSLRVRLQSF PA+G AM FFS L ++
Sbjct: 192 FTPLFKHFDSDALRTSLRVRLQSFLPAKGLAMGAKLVIFFFSFMFDLSVS 43
>gb|CV249584.1|CV249584 WS01124.B21_K13 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01124_K13 3', mRNA sequence
Length = 596
Score = 188 bits (405), Expect = 4e-047
Identities = 83/121 (68%), Positives = 97/121 (80%)
Frame = -3 / -3
Query: 741 RTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANVPY 562
RTLK+V +A E+KCLKRGVKEVVKS+ G+KGLC+IAGNISPIDVITHVPILCE +P
Sbjct: 594 RTLKVVCKAFESKCLKRGVKEVVKSLFCGHKGLCIIAGNISPIDVITHVPILCEGFGLP* 415
Query: 561 VYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVKDKLKSDYDQVVTEVAEATSAMF 382
YV KE LA+AG KRPTCCVLVLTKP KG + ++KLK+ YDQVV EV E TS++F
Sbjct: 414 GYVTFKEGLASAGAPKRPTCCVLVLTKPTKGGIGKGGQEKLKAGYDQVVFEVFELTSSLF 235
Query: 381 * 379
*
Sbjct: 234 * 232
Score = 115 bits (245), Expect = 5e-025
Identities = 52/88 (59%), Positives = 63/88 (71%)
Frame = +2 / +2
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GLV TKTQQVGLL PA+AR S T *G SH +GT V+TSIGE+FPAI HNPL+P
Sbjct: 332 GLVNTKTQQVGLLGAPALARPSLKVT*P*GRPNPSHKMGT*VMTSIGEMFPAIMHNPLWP 511
Query: 659 RRMLLTTSLTPRLRHFASEARRTSLRVR 742
++ L TTS TP +HF S A +T+ +VR
Sbjct: 512 QKRLFTTSFTPLFKHFDSNALQTTFKVR 595
>gb|CA821924.1|CA821924 R01A11 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 282
Score = 103 bits (219), Expect(2) = 5e-037
Identities = 40/47 (85%), Positives = 46/47 (97%)
Frame = -3 / +1
Query: 675 VKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANVPYVYVPSKEDL 535
+KSIRRG+KGLC+IAGNISPIDVITHVPILCEE+++PYVYV SKEDL
Sbjct: 142 MKSIRRGHKGLCIIAGNISPIDVITHVPILCEESDIPYVYVTSKEDL 282
Score = 71.6 bits (150), Expect(2) = 5e-037
Identities = 29/32 (90%), Positives = 32/32 (100%)
Frame = -3 / +3
Query: 771 KPLAGKKLCKRTLKLVRRASEAKCLKRGVKEV 676
+PLAGKKLCKRTLKLVR+ASE+KCLKRGVKEV
Sbjct: 45 QPLAGKKLCKRTLKLVRKASESKCLKRGVKEV 140
>gb|CV267465.1|CV267465 WS02031.B21_N05 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02031_N05 3', mRNA sequence
Length = 383
Score = 116 bits (248), Expect = 2e-025
Identities = 46/65 (70%), Positives = 58/65 (89%)
Frame = -3 / -3
Query: 573 NVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVKDKLKSDYDQVVTEVAEAT 394
++PYVYV SKEDLA+AG TKRPTCCVLVLTKP KGE+ E ++KLK+DYDQVV++V+E T
Sbjct: 381 DIPYVYVTSKEDLASAGATKRPTCCVLVLTKPTKGEIGKEDQEKLKADYDQVVSDVSELT 202
Query: 393 SAMF* 379
S++F*
Sbjct: 201 SSLF* 187
>gb|CV230211.1|CV230211 WS01915.B21_M07 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01915_M07 3', mRNA sequence
Length = 338
Score = 103 bits (219), Expect = 2e-021
Identities = 42/59 (71%), Positives = 52/59 (88%)
Frame = -3 / -2
Query: 555 VPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVKDKLKSDYDQVVTEVAEATSAMF* 379
V SKEDLA+AG TKRPTCCVLVLTKP KGE+ E ++KLK+DYDQVV++V+E TS++F*
Sbjct: 337 VTSKEDLASAGATKRPTCCVLVLTKPTKGEIGKEDQEKLKADYDQVVSDVSELTSSLF* 161
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 445,350,110
Number of Sequences: 369679
Number of extensions: 6864417
Number of successful extensions: 139548
Number of sequences better than 1.0e-020: 20
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 11659099200
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)