TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCN21e10.yg.2.1
(247 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG625796.1|BG625796 NXPV_066_B11_F NXPV (Nsf Xylem Plani... 182 6e-046
gb|BG625791.1|BG625791 NXPV_066_B06_F NXPV (Nsf Xylem Plani... 180 2e-045
gb|DR388038.1|DR388038 RTHG1_25_F10.g1_A029 Roots plus adde... 159 5e-039
gb|DT630528.1|DT630528 EST1154940 Subtracted pine embryo li... 28 0.77
gb|DR685453.1|DR685453 EST1075530 Normalized pine embryo li... 29 1.7
gb|DR685644.1|DR685644 EST1075721 Normalized pine embryo li... 29 1.7
gb|AW758571.1|AW758571 NXNV_085_H05_F Nsf Xylem Normal wood... 31 1.9
gb|CV033721.1|CV033721 RTNACL1_36_F05.b1_A029 Roots plus ad... 30 2.6
gb|DR165706.1|DR165706 RTPHOS1_6_G06.g1_A029 Roots minus ph... 29 4.9
gb|DR089131.1|DR089131 RTAL1_6_E12.g1_A029 Roots plus added... 22 5.4
gb|DN612913.1|DN612913 EST965963 Subtracted pine embryo lib... 27 5.8
gb|DT628166.1|DT628166 EST1156915 Subtracted pine embryo li... 29 6.7
gb|DT629114.1|DT629114 EST1155684 Subtracted pine embryo li... 22 7.4
gb|DR099449.1|DR099449 STRR1_55_E01.g1_A033 Stem Response R... 23 8.2
gb|CO409239.1|CO409239 EST839624 Sequencing ESTs from loblo... 23 8.8
gb|CO409685.1|CO409685 EST840070 Sequencing ESTs from loblo... 23 8.8
gb|CO409849.1|CO409849 EST840234 Sequencing ESTs from loblo... 23 8.8
gb|CO412781.1|CO412781 EST843166 Sequencing ESTs from loblo... 23 8.8
gb|DN460972.1|DN460972 EST956771 Sequencing ESTs from loblo... 23 8.9
gb|CX652856.1|CX652856 COLD1_62_A01.b1_A029 Root cold Pinus... 23 9.0
gb|CX650719.1|CX650719 COLD1_47_D11.g1_A029 Root cold Pinus... 23 9.1
gb|CF473203.1|CF473203 RTWW2_1_D11.b1_A021 Well-watered lob... 29 9.2
gb|CF473291.1|CF473291 RTWW2_1_D11.g1_A021 Well-watered lob... 29 9.2
gb|CF663931.1|CF663931 RTCNT1_6_C08.b1_A029 Root control Pi... 29 9.2
gb|CO159585.1|CO159585 FLD1_14_B07.g1_A029 Root flooded Pin... 29 9.2
gb|CO201614.1|CO201614 RTCNT2_7_A08.b1_A029 Root control 2 ... 29 9.2
gb|CO201685.1|CO201685 RTCNT2_7_A08.g1_A029 Root control 2 ... 29 9.2
gb|CV036407.1|CV036407 RTNACL1_59_C04.b1_A029 Roots plus ad... 29 9.2
gb|DR053139.1|DR053139 RTCA1_9_F01.b1_A029 Roots minus calc... 29 9.2
gb|DR112960.1|DR112960 RTS1_32_A04.b1_A029 Roots minus sulf... 29 9.2
gb|DR159693.1|DR159693 RTFE1_1_A05.b1_A029 Roots minus iron... 29 9.2
gb|CV137643.1|CV137643 EST848852 Sequencing ESTs from loblo... 23 9.3
gb|DN454622.1|DN454622 EST950421 Sequencing ESTs from loblo... 25 9.3
gb|CV138947.1|CV138947 EST850156 Sequencing ESTs from loblo... 25 9.4
gb|CV147317.1|CV147317 EST858526 Sequencing ESTs from loblo... 25 9.4
gb|CV136970.1|CV136970 EST848179 Sequencing ESTs from loblo... 23 9.4
gb|DR099375.1|DR099375 STRR1_55_E01.b1_A033 Stem Response R... 23 9.5
gb|DN454501.1|DN454501 EST950300 Sequencing ESTs from loblo... 25 9.6
gb|CV145860.1|CV145860 EST857069 Sequencing ESTs from loblo... 23 9.6
gb|CN785285.1|CN785285 EST783976 Sequencing ESTs from loblo... 25 9.6
gb|CO165952.1|CO165952 FLD1_58_G02.b1_A029 Root flooded Pin... 23 9.8
gb|DN463512.1|DN463512 EST959311 Sequencing ESTs from loblo... 23 9.8
gb|CX652936.1|CX652936 COLD1_62_A01.g1_A029 Root cold Pinus... 23 9.8
gb|DN450830.1|DN450830 EST946629 Sequencing ESTs from loblo... 23 9.9
gb|DN452286.1|DN452286 EST948085 Sequencing ESTs from loblo... 25 10.0
gb|DN453134.1|DN453134 EST948933 Sequencing ESTs from loblo... 25 10.0
gb|DR050756.1|DR050756 RTBOR1_25_B03.g1_A029 Roots plus add... 23 10.0
>gb|BG625796.1|BG625796 NXPV_066_B11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_066_B11 5' similar to Arabidopsis
thaliana sequence At5g13000 callose synthase catalytic
subunit -like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 517
Score = 182 bits (391), Expect = 6e-046
Identities = 71/77 (92%), Positives = 76/77 (98%)
Frame = -2 / +3
Query: 246 AGFNSTLREGNVTHHEYMQVGKGRDVGLNQISLFEAKIANGNGEQTLSRDIYRLGHRFDF 67
AGFNSTLR+GNVTHHEYMQVGKGRDVGLNQIS FEAK+ANGNGEQTLSRDIYRLGHRFDF
Sbjct: 15 AGFNSTLRKGNVTHHEYMQVGKGRDVGLNQISQFEAKVANGNGEQTLSRDIYRLGHRFDF 194
Query: 66 FRMLSCYYTTIGFYFST 16
FRMLSCY+TT+GFYFS+
Sbjct: 195 FRMLSCYFTTVGFYFSS 245
Score = 98.7 bits (209), Expect = 7e-021
Identities = 42/77 (54%), Positives = 53/77 (68%)
Frame = -1 / +2
Query: 247 CRIQFHIARRQCYSP*IHASWQRKGCRSQSNISV*GKDSKWQWRTNAEP*HLPARSSL*F 68
CRIQF+ R+C S *IHASW R C SQSNI++*G+ KW+W T+ E *+L A + +*
Sbjct: 14 CRIQFYTTERKCNSS*IHASW*RS*CGSQSNITI*GEGCKWEW*TDIES*YLSAWTPV*L 193
Query: 67 LQDAVLLLHNNWFLLQY 17
DAVLLLH W L Q+
Sbjct: 194 FSDAVLLLHYCWVLFQF 244
Score = 98.2 bits (208), Expect = 1e-020
Identities = 41/76 (53%), Positives = 55/76 (72%)
Frame = +1 / -3
Query: 19 TEVETNCCVVTRQHPEEIKAMT*PVDVTAQRLFAIAICYLCLKQRYLIETYIPSFANLHV 198
TE++ N V RQHP+++K ++ P+++T Q LF I IC L LK YLIET+I +F NLHV
Sbjct: 242 TEIKPNSSEVARQHPKKVKPVSKPINITTQCLFTIPICNLRLKL*YLIETHITTFTNLHV 63
Query: 199 FMVSNIAFAQCGIESC 246
FM+S I+F C IESC
Sbjct: 62 FMMSYISFP*CRIESC 15
Score = 90.4 bits (191), Expect(2) = 1e-019
Identities = 39/48 (81%), Positives = 41/48 (85%)
Frame = +2 / -1
Query: 104 LSVCSPLPFAIFASNRDI*LRPTSLPLPTCMYSW*VTLPSRNVELNPA 247
L+VCSP PFA FASN DI*LRPTS PLPTCMYS *VT P R+VELNPA
Sbjct: 157 LNVCSPFPFATFASNCDI*LRPTSRPLPTCMYS**VTFPFRSVELNPA 14
Score = 72.1 bits (151), Expect = 7e-013
Identities = 40/76 (52%), Positives = 43/76 (56%)
Frame = -3 / +1
Query: 245 QDSIPHCAKAMLLTMNTCKLAKEGM*VSIKYLCLRQR*QMAMANKR*AVTSTG*VIALIS 66
QDSI H K M L MNTCKL K M VSIKY LR+R QM M N+ * V G L
Sbjct: 16 QDSILHYGKEM*LIMNTCKLVKVVMWVSIKYHNLRRRLQMGMVNRH*VVIFIGLDTGLTF 195
Query: 65 SGCCLVTTQQLVSTSV 18
GCCL T+ L SV
Sbjct: 196 FGCCLATSLLLGFISV 243
Score = 67.0 bits (140), Expect = 2e-011
Identities = 35/67 (52%), Positives = 41/67 (61%)
Frame = +3 / -2
Query: 45 SNKTAS*RNQSDDLAGRCHGSAFVRHCHLLSLPQTEIFD*DLHPFLCQLACIHGE*HCLR 224
S+KTAS ++Q+ A + H S V H HL PQ IFD*D H L QLACIH E H L
Sbjct: 216 SSKTASEKSQTGVQADKYHDSMSVHHSHLQPSPQIVIFD*DPHHDLYQLACIHDELHFLS 37
Query: 225 AMWN*IL 245
+ N*IL
Sbjct: 36 VV*N*IL 16
Score = 21.2 bits (40), Expect(2) = 1e-019
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +2 / -1
Query: 20 LK*KPIVV**QDSI 61
LK* P VV *QDSI
Sbjct: 241 LK*NPTVVK*QDSI 200
>gb|BG625791.1|BG625791 NXPV_066_B06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_066_B06 5' similar to Arabidopsis
thaliana sequence At2g13675 callose synthase
(1,3-beta-glucan synthase) like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 401
Score = 180 bits (387), Expect = 2e-045
Identities = 70/77 (90%), Positives = 75/77 (97%)
Frame = -2 / +3
Query: 246 AGFNSTLREGNVTHHEYMQVGKGRDVGLNQISLFEAKIANGNGEQTLSRDIYRLGHRFDF 67
AGFNSTLR+GNVTHHEYMQVGKGRDVGLNQIS FEAK+ANGNGEQTLSRDIYRLGHRFDF
Sbjct: 15 AGFNSTLRKGNVTHHEYMQVGKGRDVGLNQISQFEAKVANGNGEQTLSRDIYRLGHRFDF 194
Query: 66 FRMLSCYYTTIGFYFST 16
FRMLSCY+TT+GFYF +
Sbjct: 195 FRMLSCYFTTVGFYFXS 245
Score = 95.9 bits (203), Expect = 5e-020
Identities = 40/75 (53%), Positives = 54/75 (72%)
Frame = +1 / -1
Query: 22 EVETNCCVVTRQHPEEIKAMT*PVDVTAQRLFAIAICYLCLKQRYLIETYIPSFANLHVF 201
E++ N V RQHP+++K ++ P+++T Q LF I IC L LK YLIET+I +F NLHVF
Sbjct: 239 EIKPNSSEVARQHPKKVKPVSKPINITTQCLFTIPICNLRLKL*YLIETHITTFTNLHVF 60
Query: 202 MVSNIAFAQCGIESC 246
M+S I+F C IESC
Sbjct: 59 MMSYISFP*CRIESC 15
Score = 95.9 bits (203), Expect = 5e-020
Identities = 41/77 (53%), Positives = 52/77 (67%)
Frame = -1 / +2
Query: 247 CRIQFHIARRQCYSP*IHASWQRKGCRSQSNISV*GKDSKWQWRTNAEP*HLPARSSL*F 68
CRIQF+ R+C S *IHASW R C SQSNI++*G+ KW+W T+ E *+L A + +*
Sbjct: 14 CRIQFYTTERKCNSS*IHASW*RS*CGSQSNITI*GEGCKWEW*TDIES*YLSAWTPV*L 193
Query: 67 LQDAVLLLHNNWFLLQY 17
DAVLLLH W L +
Sbjct: 194 FSDAVLLLHYCWVLFXF 244
Score = 90.4 bits (191), Expect = 2e-018
Identities = 39/48 (81%), Positives = 41/48 (85%)
Frame = +2 / -2
Query: 104 LSVCSPLPFAIFASNRDI*LRPTSLPLPTCMYSW*VTLPSRNVELNPA 247
L+VCSP PFA FASN DI*LRPTS PLPTCMYS *VT P R+VELNPA
Sbjct: 157 LNVCSPFPFATFASNCDI*LRPTSRPLPTCMYS**VTFPFRSVELNPA 14
Score = 71.2 bits (149), Expect = 1e-012
Identities = 37/68 (54%), Positives = 40/68 (58%)
Frame = -3 / +1
Query: 245 QDSIPHCAKAMLLTMNTCKLAKEGM*VSIKYLCLRQR*QMAMANKR*AVTSTG*VIALIS 66
QDSI H K M L MNTCKL K M VSIKY LR+R QM M N+ * V G L
Sbjct: 16 QDSILHYGKEM*LIMNTCKLVKVVMWVSIKYHNLRRRLQMGMVNRH*VVIFIGLDTGLTF 195
Query: 65 SGCCLVTT 42
GCCL T+
Sbjct: 196 FGCCLATS 219
Score = 67.0 bits (140), Expect = 2e-011
Identities = 35/67 (52%), Positives = 41/67 (61%)
Frame = +3 / -3
Query: 45 SNKTAS*RNQSDDLAGRCHGSAFVRHCHLLSLPQTEIFD*DLHPFLCQLACIHGE*HCLR 224
S+KTAS ++Q+ A + H S V H HL PQ IFD*D H L QLACIH E H L
Sbjct: 216 SSKTASEKSQTGVQADKYHDSMSVHHSHLQPSPQIVIFD*DPHHDLYQLACIHDELHFLS 37
Query: 225 AMWN*IL 245
+ N*IL
Sbjct: 36 VV*N*IL 16
>gb|DR388038.1|DR388038 RTHG1_25_F10.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_25_F10_A029 5', mRNA sequence
Length = 753
Score = 159 bits (341), Expect = 5e-039
Identities = 60/77 (77%), Positives = 70/77 (90%)
Frame = -2 / +1
Query: 246 AGFNSTLREGNVTHHEYMQVGKGRDVGLNQISLFEAKIANGNGEQTLSRDIYRLGHRFDF 67
AGFNSTLR+GN+THHEY+QVGKGRDVGLNQI++FE K+A GNGEQ LSRD+YRLG FDF
Sbjct: 121 AGFNSTLRQGNITHHEYIQVGKGRDVGLNQIAMFEGKVAGGNGEQVLSRDVYRLGQLFDF 300
Query: 66 FRMLSCYYTTIGFYFST 16
FRMLS Y++T+GFYF T
Sbjct: 301 FRMLSFYFSTVGFYFCT 351
Score = 76.7 bits (161), Expect = 3e-014
Identities = 30/76 (39%), Positives = 52/76 (68%)
Frame = +1 / -1
Query: 19 TEVETNCCVVTRQHPEEIKAMT*PVDVTAQRLFAIAICYLCLKQRYLIETYIPSFANLHV 198
T+++ NC V R HP+E+K + P++++A LF+I C LK R LI++ I +F++L+V
Sbjct: 348 TKIKANCREVER*HPKEVKELPKPINISA*NLFSIPTCNFPLKHRNLIKSNISTFSHLNV 169
Query: 199 FMVSNIAFAQCGIESC 246
FM+ +I+ CG++ C
Sbjct: 168 FMMRDISLP*CGVKPC 121
Score = 73.9 bits (155), Expect = 2e-013
Identities = 41/77 (53%), Positives = 42/77 (54%)
Frame = +2 / -2
Query: 17 VLK*KPIVV**QDSILXXXXXXXXXXXXXLSVCSPLPFAIFASNRDI*LRPTSLPLPTCM 196
V K*KP V * D+IL L CSP P A F SN I*L PTS P PT M
Sbjct: 350 VQK*KPTVEK*NDNILKKSKSCPSR*TSLLKTCSPFPPATFPSNIAI*LSPTSRPFPT*M 171
Query: 197 YSW*VTLPSRNVELNPA 247
YS V P RNVELNPA
Sbjct: 170 YS*CVIFPCRNVELNPA 120
Score = 65.2 bits (136), Expect = 9e-011
Identities = 29/77 (37%), Positives = 46/77 (59%)
Frame = -1 / +3
Query: 247 CRIQFHIARRQCYSP*IHASWQRKGCRSQSNISV*GKDSKWQWRTNAEP*HLPARSSL*F 68
CR+ HI R+ ++ *IH+ +R C + S+ V*G+ +W+WRT + L A ++L*
Sbjct: 120 CRV*LHITARKYHAS*IHSGGKRSRCWT*SDCDV*GESCRWEWRTGFKQRCLSAWAAL*L 299
Query: 67 LQDAVLLLHNNWFLLQY 17
L D ++LL +W L Y
Sbjct: 300 L*DVIVLLLYSWLLFLY 350
Score = 39.6 bits (80), Expect = 0.005
Identities = 26/71 (36%), Positives = 34/71 (47%)
Frame = -3 / +2
Query: 245 QDSIPHCAKAMLLTMNTCKLAKEGM*VSIKYLCLRQR*QMAMANKR*AVTSTG*VIALIS 66
Q PH K + MNT + K M I+ CLR + Q+ M N+ *A G +L S
Sbjct: 122 QGLTPHYGKEISRIMNTFRWEKVEMLDLIRLRCLRGKLQVGMENRF*AEMFIGLGSSLTS 301
Query: 65 SGCCLVTTQQL 33
GC T+ QL
Sbjct: 302 LGCYRSTSLQL 334
Score = 35.9 bits (72), Expect = 0.057
Identities = 20/44 (45%), Positives = 22/44 (50%)
Frame = +3 / -3
Query: 114 VRHCHLLSLPQTEIFD*DLHPFLCQLACIHGE*HCLRAMWN*IL 245
V H HL PQT D* H L CIH *+ L MW+* L
Sbjct: 253 VLHSHLQLSPQTSQSD*VQHLDLFPPECIHDA*YFLAVMWS*TL 122
>gb|DT630528.1|DT630528 EST1154940 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PIMEA02, mRNA sequence
Length = 952
Score = 27.6 bits (54), Expect(2) = 0.77
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -2 / -1
Query: 72 DFFRMLSCYYTTIGFYFSTCPGGR 1
DF R I FSTCPGGR
Sbjct: 76 DFGRRRDVKENQIASVFSTCPGGR 5
Score = 20.8 bits (39), Expect(2) = 0.77
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2 / -2
Query: 165 LNQISLFEAK 136
LNQISLF +K
Sbjct: 315 LNQISLFSSK 286
>gb|DR685453.1|DR685453 EST1075530 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAB403 3' end, mRNA sequence
Length = 836
Score = 28.6 bits (56), Expect = 9.2
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3 / -2
Query: 36 LLCSNKTAS*RNQSDDLAGRCHGS 107
LL AS NQSD+ GRCH S
Sbjct: 199 LLA*MNKASRMNQSDEQKGRCHAS 128
Score = 26.3 bits (51), Expect(2) = 1.7
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1 / +3
Query: 97 HLPARSSL*FLQDAVLLLHNN 35
HLP SSL*F++DA+ + +N
Sbjct: 138 HLPFCSSL*FIRDALFIHASN 200
Score = 20.8 bits (39), Expect(2) = 1.7
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = -1 / +1
Query: 49 LLHNNWFLLQY 17
LLHN W+ + Y
Sbjct: 757 LLHNQWWYIFY 789
>gb|DR685644.1|DR685644 EST1075721 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAB621 3' end, mRNA sequence
Length = 837
Score = 28.6 bits (56), Expect = 9.2
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3 / -3
Query: 36 LLCSNKTAS*RNQSDDLAGRCHGS 107
LL AS NQSD+ GRCH S
Sbjct: 175 LLA*MNKASRMNQSDEQKGRCHAS 104
Score = 26.3 bits (51), Expect(2) = 1.7
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1 / +3
Query: 97 HLPARSSL*FLQDAVLLLHNN 35
HLP SSL*F++DA+ + +N
Sbjct: 114 HLPFCSSL*FIRDALFIHASN 176
Score = 20.8 bits (39), Expect(2) = 1.7
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = -1 / +2
Query: 49 LLHNNWFLLQY 17
LLHN W+ + Y
Sbjct: 743 LLHNQWWYIFY 775
>gb|AW758571.1|AW758571 NXNV_085_H05_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_085_H05 5', mRNA sequence
Length = 216
Score = 30.9 bits (61), Expect = 1.9
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2 / -1
Query: 96 IYRLGHRFDFFRMLSCYYTTIGFYFSTCP 10
+Y+L ++ DFFR+ S + + FY + CP
Sbjct: 216 VYQLYYQKDFFRVSSLFVGQMPFYANWCP 130
>gb|CV033721.1|CV033721 RTNACL1_36_F05.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_36_F05_A029 3', mRNA sequence
Length = 803
Score = 30.4 bits (60), Expect = 2.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3 / +3
Query: 72 QSDDLAGRCHGSAFVRHCHLLSLPQTE 152
+++DL G HG +RHC LL + Q++
Sbjct: 60 RTNDLLGPIHGLIQIRHCGLLPIYQSQ 140
>gb|DR165706.1|DR165706 RTPHOS1_6_G06.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_6_G06_A029 5', mRNA sequence
Length = 856
Score = 29.5 bits (58), Expect = 4.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3 / +2
Query: 87 AGRCHGSAFVRHCHLLSLPQTEIFD 161
A + H A+ RH LLS P +IFD
Sbjct: 146 AWQTHSGAWERHPELLSAPSPDIFD 220
>gb|DR089131.1|DR089131 RTAL1_6_E12.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_6_E12_A029 5', mRNA sequence
Length = 786
Score = 22.1 bits (42), Expect(3) = 5.4
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -3 / -3
Query: 68 SSGCCLVTTQQLVSTSVP 15
SSGCC + QL S P
Sbjct: 400 SSGCCPLRGHQLCSLRSP 347
Score = 19.4 bits (36), Expect(3) = 5.4
Identities = 8/23 (34%), Positives = 9/23 (39%)
Frame = -1 / -3
Query: 238 QFHIARRQCYSP*IHASWQRKGC 170
Q H RR+C P GC
Sbjct: 457 QSHAGRRRCPGPLSWHDTHSSGC 389
Score = 17.6 bits (32), Expect(3) = 5.4
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = -2 / -2
Query: 21 STCPGGR 1
STC GGR
Sbjct: 248 STCYGGR 228
>gb|DN612913.1|DN612913 EST965963 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSABL73, mRNA sequence
Length = 475
Score = 27.2 bits (53), Expect(2) = 5.8
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1 / -3
Query: 1 AAARAGTEVETNCCVV 48
AAARA T E CCV+
Sbjct: 470 AAARASTRGEAGCCVI 423
Score = 17.1 bits (31), Expect(2) = 5.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1 / -2
Query: 151 RYLIETYIPSFANL 192
RYLI + +PS A L
Sbjct: 429 RYLITS*LPSGALL 388
>gb|DT628166.1|DT628166 EST1156915 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMCV04 5' end, mRNA sequence
Length = 373
Score = 29.0 bits (57), Expect = 6.7
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -2 / -2
Query: 30 FYFSTCPGGR 1
FYF TCPGGR
Sbjct: 36 FYFGTCPGGR 7
>gb|DT629114.1|DT629114 EST1155684 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMD576 5' end, mRNA sequence
Length = 451
Score = 22.1 bits (42), Expect(2) = 7.4
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1 / -3
Query: 34 NCCVVTR 54
NCCVVTR
Sbjct: 122 NCCVVTR 102
Score = 21.7 bits (41), Expect(2) = 7.4
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +2 / -3
Query: 2 RPPGQVLK*KP 34
RPPGQV + KP
Sbjct: 446 RPPGQVPRIKP 414
>gb|DR099449.1|DR099449 STRR1_55_E01.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_55_E01_A033 5', mRNA sequence
Length = 687
Score = 23.1 bits (44), Expect(2) = 8.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2 / +1
Query: 72 DFFRMLSCYYTTIGFYFSTCPG 7
D MLS Y+ T+G+ +C G
Sbjct: 538 DCCAMLSLYFFTLGWLGLSCEG 603
Score = 21.2 bits (40), Expect(2) = 8.2
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -2 / +2
Query: 204 HEYMQVGKGRDVG 166
H Y VG GRD G
Sbjct: 173 HGYGSVGPGRDQG 211
>gb|CO409239.1|CO409239 EST839624 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAKN24 5' end, mRNA sequence
Length = 745
Score = 23.1 bits (44), Expect(2) = 8.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2 / +1
Query: 72 DFFRMLSCYYTTIGFYFSTCPG 7
D MLS Y+ T+G+ +C G
Sbjct: 589 DCCAMLSLYFFTLGWLGLSCEG 654
Score = 21.2 bits (40), Expect(2) = 8.8
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -2 / +2
Query: 204 HEYMQVGKGRDVG 166
H Y VG GRD G
Sbjct: 224 HGYGSVGPGRDQG 262
>gb|CO409685.1|CO409685 EST840070 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAKT20 5' end, mRNA sequence
Length = 745
Score = 23.1 bits (44), Expect(2) = 8.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2 / +1
Query: 72 DFFRMLSCYYTTIGFYFSTCPG 7
D MLS Y+ T+G+ +C G
Sbjct: 589 DCCAMLSLYFFTLGWLGLSCEG 654
Score = 21.2 bits (40), Expect(2) = 8.8
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -2 / +2
Query: 204 HEYMQVGKGRDVG 166
H Y VG GRD G
Sbjct: 224 HGYGSVGPGRDQG 262
>gb|CO409849.1|CO409849 EST840234 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAKV32 5' end, mRNA sequence
Length = 745
Score = 23.1 bits (44), Expect(2) = 8.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2 / +1
Query: 72 DFFRMLSCYYTTIGFYFSTCPG 7
D MLS Y+ T+G+ +C G
Sbjct: 589 DCCAMLSLYFFTLGWLGLSCEG 654
Score = 21.2 bits (40), Expect(2) = 8.8
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -2 / +2
Query: 204 HEYMQVGKGRDVG 166
H Y VG GRD G
Sbjct: 224 HGYGSVGPGRDQG 262
>gb|CO412781.1|CO412781 EST843166 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAM189 5' end, mRNA sequence
Length = 745
Score = 23.1 bits (44), Expect(2) = 8.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2 / +1
Query: 72 DFFRMLSCYYTTIGFYFSTCPG 7
D MLS Y+ T+G+ +C G
Sbjct: 589 DCCAMLSLYFFTLGWLGLSCEG 654
Score = 21.2 bits (40), Expect(2) = 8.8
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -2 / +2
Query: 204 HEYMQVGKGRDVG 166
H Y VG GRD G
Sbjct: 224 HGYGSVGPGRDQG 262
>gb|DN460972.1|DN460972 EST956771 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPII476 5' end, mRNA sequence
Length = 755
Score = 23.1 bits (44), Expect(2) = 8.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2 / +2
Query: 72 DFFRMLSCYYTTIGFYFSTCPG 7
D MLS Y+ T+G+ +C G
Sbjct: 599 DCCAMLSLYFFTLGWLGLSCEG 664
Score = 21.2 bits (40), Expect(2) = 8.9
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -2 / +3
Query: 204 HEYMQVGKGRDVG 166
H Y VG GRD G
Sbjct: 234 HGYGSVGPGRDQG 272
>gb|CX652856.1|CX652856 COLD1_62_A01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_A01_A029 3', mRNA sequence
Length = 762
Score = 23.1 bits (44), Expect(2) = 9.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2 / +2
Query: 72 DFFRMLSCYYTTIGFYFSTCPG 7
D MLS Y+ T+G+ +C G
Sbjct: 425 DCCAMLSLYFFTLGWLGLSCEG 490
Score = 21.2 bits (40), Expect(2) = 9.0
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -2 / +3
Query: 204 HEYMQVGKGRDVG 166
H Y VG GRD G
Sbjct: 60 HGYGSVGPGRDQG 98
>gb|CX650719.1|CX650719 COLD1_47_D11.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_47_D11_A029 5', mRNA sequence
Length = 772
Score = 23.1 bits (44), Expect(2) = 9.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2 / +1
Query: 72 DFFRMLSCYYTTIGFYFSTCPG 7
D MLS Y+ T+G+ +C G
Sbjct: 457 DCCAMLSLYFFTLGWLGLSCEG 522
Score = 21.2 bits (40), Expect(2) = 9.1
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -2 / +2
Query: 204 HEYMQVGKGRDVG 166
H Y VG GRD G
Sbjct: 92 HGYGSVGPGRDQG 130
>gb|CF473203.1|CF473203 RTWW2_1_D11.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_1_D11_A021 3', mRNA sequence
Length = 694
Score = 28.6 bits (56), Expect = 9.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2 / +1
Query: 87 LGHRFDFFRMLSCYYTTIGFYFSTC 13
+ H + +R L C Y FYFS C
Sbjct: 358 VNHSWGLYR*LDCVYVIYIFYFSEC 432
>gb|CF473291.1|CF473291 RTWW2_1_D11.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_1_D11_A021 5', mRNA sequence
Length = 736
Score = 28.6 bits (56), Expect = 9.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2 / +1
Query: 87 LGHRFDFFRMLSCYYTTIGFYFSTC 13
+ H + +R L C Y FYFS C
Sbjct: 544 VNHSWGLYR*LDCVYVIYIFYFSEC 618
>gb|CF663931.1|CF663931 RTCNT1_6_C08.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_6_C08_A029 3', mRNA sequence
Length = 581
Score = 28.6 bits (56), Expect = 9.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2 / +3
Query: 87 LGHRFDFFRMLSCYYTTIGFYFSTC 13
+ H + +R L C Y FYFS C
Sbjct: 324 VNHSWGLYR*LDCVYVIYIFYFSEC 398
>gb|CO159585.1|CO159585 FLD1_14_B07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_14_B07_A029 5', mRNA sequence
Length = 783
Score = 28.6 bits (56), Expect = 9.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2 / -3
Query: 176 LPLPTCMYSW*VTLPSRNVELNPA 247
LP PT SW*+ + NVE N A
Sbjct: 121 LPAPTSQASW*LAVKDANVENNEA 50
>gb|CO201614.1|CO201614 RTCNT2_7_A08.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_7_A08_A029 3', mRNA sequence
Length = 761
Score = 28.6 bits (56), Expect = 9.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2 / +2
Query: 87 LGHRFDFFRMLSCYYTTIGFYFSTC 13
+ H + +R L C Y FYFS C
Sbjct: 209 VNHSWGLYR*LDCVYVIYIFYFSEC 283
>gb|CO201685.1|CO201685 RTCNT2_7_A08.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_7_A08_A029 5', mRNA sequence
Length = 760
Score = 28.6 bits (56), Expect = 9.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2 / +3
Query: 87 LGHRFDFFRMLSCYYTTIGFYFSTC 13
+ H + +R L C Y FYFS C
Sbjct: 480 VNHSWGLYR*LDCVYVIYIFYFSEC 554
>gb|CV036407.1|CV036407 RTNACL1_59_C04.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_59_C04_A029 3', mRNA sequence
Length = 836
Score = 28.6 bits (56), Expect = 9.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2 / +3
Query: 87 LGHRFDFFRMLSCYYTTIGFYFSTC 13
+ H + +R L C Y FYFS C
Sbjct: 678 VNHSWGLYR*LDCVYVIYIFYFSEC 752
>gb|DR053139.1|DR053139 RTCA1_9_F01.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_9_F01_A029 3', mRNA sequence
Length = 670
Score = 28.6 bits (56), Expect = 9.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2 / +1
Query: 87 LGHRFDFFRMLSCYYTTIGFYFSTC 13
+ H + +R L C Y FYFS C
Sbjct: 310 VNHSWGLYR*LDCVYVIYIFYFSEC 384
>gb|DR112960.1|DR112960 RTS1_32_A04.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_32_A04_A029 3', mRNA sequence
Length = 631
Score = 28.6 bits (56), Expect = 9.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2 / +1
Query: 176 LPLPTCMYSW*VTLPSRNVELNPA 247
LP PT SW*+ + NVE N A
Sbjct: 472 LPAPTSQASW*LAVKDANVENNEA 543
>gb|DR159693.1|DR159693 RTFE1_1_A05.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_1_A05_A029 3', mRNA sequence
Length = 583
Score = 28.6 bits (56), Expect = 9.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2 / +2
Query: 87 LGHRFDFFRMLSCYYTTIGFYFSTC 13
+ H + +R L C Y FYFS C
Sbjct: 326 VNHSWGLYR*LDCVYVIYIFYFSEC 400
>gb|CV137643.1|CV137643 EST848852 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAS01 5' end, mRNA sequence
Length = 789
Score = 23.1 bits (44), Expect(2) = 9.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2 / +1
Query: 72 DFFRMLSCYYTTIGFYFSTCPG 7
D MLS Y+ T+G+ +C G
Sbjct: 589 DCCAMLSLYFFTLGWLGLSCEG 654
Score = 21.2 bits (40), Expect(2) = 9.3
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -2 / +2
Query: 204 HEYMQVGKGRDVG 166
H Y VG GRD G
Sbjct: 224 HGYGSVGPGRDQG 262
>gb|DN454622.1|DN454622 EST950421 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIG554 5' end, mRNA sequence
Length = 793
Score = 24.9 bits (48), Expect(2) = 9.3
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1 / +2
Query: 1 AAARAGTEVETNCCVVT 51
+AAR + T CC+VT
Sbjct: 23 SAARLEVQTNTGCCIVT 73
Score = 19.4 bits (36), Expect(2) = 9.3
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3 / +1
Query: 87 AGRCHGSAFVRHCHLLSLPQTEIFD*D 167
AG V +C L +PQ + D*D
Sbjct: 712 AG*TESRVTVPNCALT*IPQRVLVD*D 792
>gb|CV138947.1|CV138947 EST850156 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIB921 5' end, mRNA sequence
Length = 800
Score = 24.9 bits (48), Expect(2) = 9.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1 / +2
Query: 1 AAARAGTEVETNCCVVT 51
+AAR + T CC+VT
Sbjct: 29 SAARLEVQTNTGCCIVT 79
Score = 19.4 bits (36), Expect(2) = 9.4
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3 / +2
Query: 87 AGRCHGSAFVRHCHLLSLPQTEIFD*D 167
AG V +C L +PQ + D*D
Sbjct: 719 AG*TESRVTVPNCALT*IPQRVLVD*D 799
>gb|CV147317.1|CV147317 EST858526 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIE596 5' end, mRNA sequence
Length = 803
Score = 24.9 bits (48), Expect(2) = 9.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1 / +1
Query: 1 AAARAGTEVETNCCVVT 51
+AAR + T CC+VT
Sbjct: 25 SAARLEVQTNTGCCIVT 75
Score = 19.4 bits (36), Expect(2) = 9.4
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3 / +3
Query: 87 AGRCHGSAFVRHCHLLSLPQTEIFD*D 167
AG V +C L +PQ + D*D
Sbjct: 714 AG*TESRVTVPNCALT*IPQRVLVD*D 794
>gb|CV136970.1|CV136970 EST848179 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAI56 5' end, mRNA sequence
Length = 805
Score = 23.1 bits (44), Expect(2) = 9.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2 / +2
Query: 72 DFFRMLSCYYTTIGFYFSTCPG 7
D MLS Y+ T+G+ +C G
Sbjct: 485 DCCAMLSLYFFTLGWLGLSCEG 550
Score = 21.2 bits (40), Expect(2) = 9.4
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -2 / +3
Query: 204 HEYMQVGKGRDVG 166
H Y VG GRD G
Sbjct: 120 HGYGSVGPGRDQG 158
>gb|DR099375.1|DR099375 STRR1_55_E01.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_55_E01_A033 3', mRNA sequence
Length = 808
Score = 23.1 bits (44), Expect(2) = 9.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2 / +2
Query: 72 DFFRMLSCYYTTIGFYFSTCPG 7
D MLS Y+ T+G+ +C G
Sbjct: 497 DCCAMLSLYFFTLGWLGLSCEG 562
Score = 21.2 bits (40), Expect(2) = 9.5
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -2 / +3
Query: 204 HEYMQVGKGRDVG 166
H Y VG GRD G
Sbjct: 132 HGYGSVGPGRDQG 170
>gb|DN454501.1|DN454501 EST950300 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIG425 5' end, mRNA sequence
Length = 824
Score = 24.9 bits (48), Expect(2) = 9.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1 / +1
Query: 1 AAARAGTEVETNCCVVT 51
+AAR + T CC+VT
Sbjct: 55 SAARLEVQTNTGCCIVT 105
Score = 19.4 bits (36), Expect(2) = 9.6
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3 / +2
Query: 87 AGRCHGSAFVRHCHLLSLPQTEIFD*D 167
AG V +C L +PQ + D*D
Sbjct: 743 AG*TESRVTVPNCALT*IPQRVLVD*D 823
>gb|CV145860.1|CV145860 EST857069 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIDP87 5' end, mRNA sequence
Length = 824
Score = 23.1 bits (44), Expect(2) = 9.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2 / +3
Query: 72 DFFRMLSCYYTTIGFYFSTCPG 7
D MLS Y+ T+G+ +C G
Sbjct: 513 DCCAMLSLYFFTLGWLGLSCEG 578
Score = 21.2 bits (40), Expect(2) = 9.6
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -2 / +1
Query: 204 HEYMQVGKGRDVG 166
H Y VG GRD G
Sbjct: 148 HGYGSVGPGRDQG 186
>gb|CN785285.1|CN785285 EST783976 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAAX03 5' end, mRNA sequence
Length = 827
Score = 24.9 bits (48), Expect(2) = 9.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1 / +3
Query: 1 AAARAGTEVETNCCVVT 51
+AAR + T CC+VT
Sbjct: 36 SAARLEVQTNTGCCIVT 86
Score = 19.4 bits (36), Expect(2) = 9.6
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3 / +2
Query: 87 AGRCHGSAFVRHCHLLSLPQTEIFD*D 167
AG V +C L +PQ + D*D
Sbjct: 725 AG*TESRVTVPNCALT*IPQRVLVD*D 805
>gb|CO165952.1|CO165952 FLD1_58_G02.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_58_G02_A029 3', mRNA sequence
Length = 838
Score = 23.1 bits (44), Expect(2) = 9.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2 / +3
Query: 72 DFFRMLSCYYTTIGFYFSTCPG 7
D MLS Y+ T+G+ +C G
Sbjct: 531 DCCAMLSLYFFTLGWLGLSCEG 596
Score = 21.2 bits (40), Expect(2) = 9.8
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -2 / +1
Query: 204 HEYMQVGKGRDVG 166
H Y VG GRD G
Sbjct: 166 HGYGSVGPGRDQG 204
>gb|DN463512.1|DN463512 EST959311 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIIZ76 5' end, mRNA sequence
Length = 839
Score = 23.1 bits (44), Expect(2) = 9.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2 / +1
Query: 72 DFFRMLSCYYTTIGFYFSTCPG 7
D MLS Y+ T+G+ +C G
Sbjct: 598 DCCAMLSLYFFTLGWLGLSCEG 663
Score = 21.2 bits (40), Expect(2) = 9.8
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -2 / +2
Query: 204 HEYMQVGKGRDVG 166
H Y VG GRD G
Sbjct: 233 HGYGSVGPGRDQG 271
>gb|CX652936.1|CX652936 COLD1_62_A01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_A01_A029 5', mRNA sequence
Length = 842
Score = 23.1 bits (44), Expect(2) = 9.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2 / +1
Query: 72 DFFRMLSCYYTTIGFYFSTCPG 7
D MLS Y+ T+G+ +C G
Sbjct: 595 DCCAMLSLYFFTLGWLGLSCEG 660
Score = 21.2 bits (40), Expect(2) = 9.8
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -2 / +2
Query: 204 HEYMQVGKGRDVG 166
H Y VG GRD G
Sbjct: 230 HGYGSVGPGRDQG 268
>gb|DN450830.1|DN450830 EST946629 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIEU88 5' end, mRNA sequence
Length = 846
Score = 23.1 bits (44), Expect(2) = 9.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2 / +2
Query: 72 DFFRMLSCYYTTIGFYFSTCPG 7
D MLS Y+ T+G+ +C G
Sbjct: 599 DCCAMLSLYFFTLGWLGLSCEG 664
Score = 21.2 bits (40), Expect(2) = 9.9
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -2 / +3
Query: 204 HEYMQVGKGRDVG 166
H Y VG GRD G
Sbjct: 234 HGYGSVGPGRDQG 272
>gb|DN452286.1|DN452286 EST948085 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIFD42 5' end, mRNA sequence
Length = 858
Score = 24.9 bits (48), Expect(2) = 10.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1 / +1
Query: 1 AAARAGTEVETNCCVVT 51
+AAR + T CC+VT
Sbjct: 55 SAARLEVQTNTGCCIVT 105
Score = 19.4 bits (36), Expect(2) = 10.0
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3 / +3
Query: 87 AGRCHGSAFVRHCHLLSLPQTEIFD*D 167
AG V +C L +PQ + D*D
Sbjct: 744 AG*TESRVTVPNCALT*IPQRVLVD*D 824
>gb|DN453134.1|DN453134 EST948933 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIFP61 5' end, mRNA sequence
Length = 858
Score = 24.9 bits (48), Expect(2) = 10.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1 / +2
Query: 1 AAARAGTEVETNCCVVT 51
+AAR + T CC+VT
Sbjct: 56 SAARLEVQTNTGCCIVT 106
Score = 19.4 bits (36), Expect(2) = 10.0
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3 / +2
Query: 87 AGRCHGSAFVRHCHLLSLPQTEIFD*D 167
AG V +C L +PQ + D*D
Sbjct: 746 AG*TESRVTVPNCALT*IPQRVLVD*D 826
>gb|DR050756.1|DR050756 RTBOR1_25_B03.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_25_B03_A029 5', mRNA sequence
Length = 859
Score = 23.1 bits (44), Expect(2) = 10.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2 / -2
Query: 72 DFFRMLSCYYTTIGFYFSTCPG 7
D MLS Y+ T+G+ +C G
Sbjct: 336 DCCAMLSLYFFTLGWLGLSCEG 271
Score = 21.2 bits (40), Expect(2) = 10.0
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -2 / -3
Query: 204 HEYMQVGKGRDVG 166
H Y VG GRD G
Sbjct: 701 HGYGSVGPGRDQG 663
Database: Pinus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:25 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 142,177,886
Number of Sequences: 355925
Number of extensions: 1723381
Number of successful extensions: 169318
Number of sequences better than 10.0: 55
length of database: 72,425,745
effective HSP length: 48
effective length of database: 55,341,345
effective search space used: 1826264385
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)