TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCM12h10.yg.2.1
(339 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO159016.1|CO159016 FLD1_10_F07.g1_A029 Root flooded Pin... 143 4e-034
gb|BG317521.1|BG317521 NXPV_002_G06_F NXPV (Nsf Xylem Plani... 142 8e-034
gb|BQ696956.1|BQ696956 NXPV_047_C11_F NXPV (Nsf Xylem Plani... 134 2e-031
>gb|CO159016.1|CO159016 FLD1_10_F07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_10_F07_A029 5', mRNA sequence
Length = 796
Score = 143 bits (307), Expect = 4e-034
Identities = 56/111 (50%), Positives = 73/111 (65%)
Frame = -3 / +3
Query: 334 SSVXXTFSMGTKSXXXDXXILHGGAKYRATXRGFVVQHKSFAENYXLYARGHFIKAIELG 155
++V TFS+GTK+ +LHGGAKYR T RGFVV H FAENY Y+R HF+K +EL
Sbjct: 60 AAVFFTFSLGTKTHYYGRTLLHGGAKYRGTGRGFVVFHAKFAENYRFYSRSHFVKGLELM 239
Query: 154 IILTVYAAHSVIAKNTLVYIXXXXSSWFLVVSWIMAPFAFXXSGFDWLKTV 2
++L VY +S + T+ YI S WF+V +W+ APF F SGF+W K V
Sbjct: 240 LLLIVYTVYSQAHRKTVPYILITYSMWFMVGAWLFAPFLFNPSGFEWQKIV 392
>gb|BG317521.1|BG317521 NXPV_002_G06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_002_G06 5' similar to Arabidopsis
thaliana sequence At5g13000 callose synthase catalytic
subunit -like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 421
Score = 142 bits (305), Expect = 8e-034
Identities = 55/109 (50%), Positives = 72/109 (66%)
Frame = -3 / +1
Query: 328 VXXTFSMGTKSXXXDXXILHGGAKYRATXRGFVVQHKSFAENYXLYARGHFIKAIELGII 149
V TFS+GTK+ +LHGGAKYRAT RGFVV H FA+NY Y+R HF+K +EL ++
Sbjct: 1 VFFTFSLGTKTHYYGRTLLHGGAKYRATGRGFVVFHAKFADNYRFYSRSHFVKGLELMLL 180
Query: 148 LTVYAAHSVIAKNTLVYIXXXXSSWFLVVSWIMAPFAFXXSGFDWLKTV 2
L VY + +NT+ Y+ S WF+V +W+ APF F SGF+W K V
Sbjct: 181 LIVYNVYGQPYRNTIAYLLITFSMWFMVGTWLFAPFLFNPSGFEWQKIV 327
>gb|BQ696956.1|BQ696956 NXPV_047_C11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_047_C11 5' similar to Arabidopsis
thaliana sequence At5g13000 callose synthase catalytic
subunit -like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 601
Score = 134 bits (287), Expect = 2e-031
Identities = 54/100 (54%), Positives = 70/100 (70%)
Frame = -3 / +2
Query: 334 SSVXXTFSMGTKSXXXDXXILHGGAKYRATXRGFVVQHKSFAENYXLYARGHFIKAIELG 155
+SV TFS+GTK+ ILHGGAKYRAT RGFVV+H+ +AENY LY+R HF K +EL
Sbjct: 263 ASVFFTFSLGTKTHYFGRTILHGGAKYRATGRGFVVRHEKYAENYRLYSRSHFTKGLELM 442
Query: 154 IILTVYAAHSVIAKNTLVYIXXXXSSWFLVVSWIMAPFAF 35
++L VY + AK+ + Y+ S WFLVV+W+ APF F
Sbjct: 443 MLLFVYNIYCSAAKDFVSYLLITLSMWFLVVTWLFAPFLF 562
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 152,436,304
Number of Sequences: 355925
Number of extensions: 1608385
Number of successful extensions: 61866
Number of sequences better than 1.0e-020: 5
length of database: 72,425,745
effective HSP length: 49
effective length of database: 54,985,420
effective search space used: 3464081460
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)