TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCL24b11.yg.2.1
         (520 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DR684943.1|DR684943  EST1075020 Normalized pine embryo li...   100   7e-021
gb|DR687054.1|DR687054  EST1077132 Normalized pine embryo li...   100   7e-021
gb|DR692054.1|DR692054  EST1082141 Normalized pine embryo li...   100   7e-021
gb|DT632612.1|DT632612  EST1147543 Normalized pine embryo li...   100   7e-021

>gb|DR684943.1|DR684943 EST1075020 Normalized pine embryo library, Lib_D Pinus taeda cDNA
           clone PWAAY38 3' end, mRNA sequence
          Length = 859

 Score =  100 bits (213), Expect = 7e-021
 Identities = 42/73 (57%), Positives = 48/73 (65%)
 Frame = +2 / -3

                                                                       
Query: 269 SQSKPQTSRTGPSNLVAKGLTRTHKRESMDASSIDSTTTTVGTLPCLPITPLRNGWRWRT 448
           SQSKP +S  GPS+L   GL RTH+RE MDAS ID T T VG   CLPI P R G++   
Sbjct: 617 SQSKPHSSNVGPSDLAMNGLIRTHRREKMDASRIDHTITIVGVRFCLPIKPFRKGYKCTI 438

                        
Query: 449 TQKEKNSLPSSGP 487
           TQK K S P+ GP
Sbjct: 437 TQKAKKSFPNRGP 399



>gb|DR687054.1|DR687054 EST1077132 Normalized pine embryo library, Lib_D Pinus taeda cDNA
           clone PWABM78 3' end, mRNA sequence
          Length = 740

 Score =  100 bits (213), Expect = 7e-021
 Identities = 42/73 (57%), Positives = 48/73 (65%)
 Frame = +2 / -2

                                                                       
Query: 269 SQSKPQTSRTGPSNLVAKGLTRTHKRESMDASSIDSTTTTVGTLPCLPITPLRNGWRWRT 448
           SQSKP +S  GPS+L   GL RTH+RE MDAS ID T T VG   CLPI P R G++   
Sbjct: 712 SQSKPHSSNVGPSDLAMNGLIRTHRREKMDASRIDHTITIVGVRFCLPIKPFRKGYKCTI 533

                        
Query: 449 TQKEKNSLPSSGP 487
           TQK K S P+ GP
Sbjct: 532 TQKAKKSFPNRGP 494



>gb|DR692054.1|DR692054 EST1082141 Normalized pine embryo library, Lib_D Pinus taeda cDNA
           clone PWADH43 3' end, mRNA sequence
          Length = 770

 Score =  100 bits (213), Expect = 7e-021
 Identities = 42/73 (57%), Positives = 48/73 (65%)
 Frame = +2 / -3

                                                                       
Query: 269 SQSKPQTSRTGPSNLVAKGLTRTHKRESMDASSIDSTTTTVGTLPCLPITPLRNGWRWRT 448
           SQSKP +S  GPS+L   GL RTH+RE MDAS ID T T VG   CLPI P R G++   
Sbjct: 372 SQSKPHSSNVGPSDLAMNGLIRTHRREKMDASRIDHTITIVGVRFCLPIKPFRKGYKCTI 193

                        
Query: 449 TQKEKNSLPSSGP 487
           TQK K S P+ GP
Sbjct: 192 TQKAKKSFPNRGP 154



>gb|DT632612.1|DT632612 EST1147543 Normalized pine embryo library, Lib_D Pinus taeda cDNA
           clone PIMFL85 3' end, mRNA sequence
          Length = 771

 Score =  100 bits (213), Expect = 7e-021
 Identities = 42/73 (57%), Positives = 48/73 (65%)
 Frame = +2 / -3

                                                                       
Query: 269 SQSKPQTSRTGPSNLVAKGLTRTHKRESMDASSIDSTTTTVGTLPCLPITPLRNGWRWRT 448
           SQSKP +S  GPS+L   GL RTH+RE MDAS ID T T VG   CLPI P R G++   
Sbjct: 625 SQSKPHSSNVGPSDLAMNGLIRTHRREKMDASRIDHTITIVGVRFCLPIKPFRKGYKCTI 446

                        
Query: 449 TQKEKNSLPSSGP 487
           TQK K S P+ GP
Sbjct: 445 TQKAKKSFPNRGP 407



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 249,851,408
Number of Sequences: 355925
Number of extensions: 3334309
Number of successful extensions: 53581
Number of sequences better than 1.0e-020: 4
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 6567101970
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)