TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCH13e05.yg.2.1
         (577 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DR117061.1|DR117061  RTMG1_4_B01.g1_A029 Roots minus magn...    62   6e-021
gb|CX712891.1|CX712891  RTPQ1_5_B06.g1_A032 Roots treated wi...    62   6e-021
gb|DR116979.1|DR116979  RTMG1_4_B01.b1_A029 Roots minus magn...    62   6e-021
gb|DR111377.1|DR111377  RTS1_17_F12.b1_A029 Roots minus sulf...    62   6e-021

>gb|DR117061.1|DR117061 RTMG1_4_B01.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
           RTMG1_4_B01_A029 5', mRNA sequence
          Length = 800

 Score = 62.5 bits (130), Expect(2) = 6e-021
 Identities = 20/41 (48%), Positives = 34/41 (82%)
 Frame = -1 / +3

                                                    
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINE 392
           A+GPGYI+++DIA  +  +HK+  L++FK+EDV+MG+W+ +
Sbjct: 270 ANGPGYIITRDIANFIVSQHKNQTLRLFKMEDVSMGMWVEQ 392




 Score = 57.9 bits (120), Expect(2) = 6e-021
 Identities = 22/49 (44%), Positives = 28/49 (57%)
 Frame = -1 / +3

                                                            
Query: 370 VKYENDGRILVEGCEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCCKE*Q 224
           V+Y +D +    GC D Y  AHYQ PR M+C+WD+  K K   C   *Q
Sbjct: 411 VQYSHDWKFCQFGCIDDYYTAHYQSPRQMICMWDKLSKGKAQCCNVR*Q 557



>gb|CX712891.1|CX712891 RTPQ1_5_B06.g1_A032 Roots treated with paraquat Pinus taeda cDNA
           clone RTPQ1_5_B06_A032 5', mRNA sequence
          Length = 781

 Score = 62.5 bits (130), Expect(2) = 6e-021
 Identities = 20/41 (48%), Positives = 34/41 (82%)
 Frame = -1 / -1

                                                    
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINE 392
           A+GPGYI+++DIA  +  +HK+  L++FK+EDV+MG+W+ +
Sbjct: 436 ANGPGYIITRDIANFIVSQHKNQTLRLFKMEDVSMGMWVEQ 314




 Score = 57.9 bits (120), Expect(2) = 6e-021
 Identities = 22/49 (44%), Positives = 28/49 (57%)
 Frame = -1 / -1

                                                            
Query: 370 VKYENDGRILVEGCEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCCKE*Q 224
           V+Y +D +    GC D Y  AHYQ PR M+C+WD+  K K   C   *Q
Sbjct: 295 VQYSHDWKFCQFGCIDDYYTAHYQSPRQMICMWDKLSKGKAQCCNVR*Q 149



>gb|DR116979.1|DR116979 RTMG1_4_B01.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
           RTMG1_4_B01_A029 3', mRNA sequence
          Length = 725

 Score = 62.5 bits (130), Expect(2) = 6e-021
 Identities = 20/41 (48%), Positives = 34/41 (82%)
 Frame = -1 / +3

                                                    
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINE 392
           A+GPGYI+++DIA  +  +HK+  L++FK+EDV+MG+W+ +
Sbjct: 141 ANGPGYIITRDIANFIVSQHKNQTLRLFKMEDVSMGMWVEQ 263




 Score = 57.9 bits (120), Expect(2) = 6e-021
 Identities = 22/49 (44%), Positives = 28/49 (57%)
 Frame = -1 / +3

                                                            
Query: 370 VKYENDGRILVEGCEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCCKE*Q 224
           V+Y +D +    GC D Y  AHYQ PR M+C+WD+  K K   C   *Q
Sbjct: 282 VQYSHDWKFCQFGCIDDYYTAHYQSPRQMICMWDKLSKGKAQCCNVR*Q 428



>gb|DR111377.1|DR111377 RTS1_17_F12.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
           RTS1_17_F12_A029 3', mRNA sequence
          Length = 674

 Score = 62.5 bits (130), Expect(2) = 6e-021
 Identities = 20/41 (48%), Positives = 34/41 (82%)
 Frame = -1 / +2

                                                    
Query: 514 AHGPGYIVSKDIAKEVYRKHKSGELKMFKLEDVAMGIWINE 392
           A+GPGYI+++DIA  +  +HK+  L++FK+EDV+MG+W+ +
Sbjct: 59  ANGPGYIITRDIANFIVSQHKNQTLRLFKMEDVSMGMWVEQ 181




 Score = 57.9 bits (120), Expect(2) = 6e-021
 Identities = 22/49 (44%), Positives = 28/49 (57%)
 Frame = -1 / +2

                                                            
Query: 370 VKYENDGRILVEGCEDGYVIAHYQEPRDMMCLWDQFQKTKRGTCCKE*Q 224
           V+Y +D +    GC D Y  AHYQ PR M+C+WD+  K K   C   *Q
Sbjct: 200 VQYSHDWKFCQFGCIDDYYTAHYQSPRQMICMWDKLSKGKAQCCNVR*Q 346



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 320,336,177
Number of Sequences: 355925
Number of extensions: 4338964
Number of successful extensions: 43121
Number of sequences better than 1.0e-020: 4
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 7598299800
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)