TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG13d12.yg.2.1
(755 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR388038.1|DR388038 RTHG1_25_F10.g1_A029 Roots plus adde... 133 2e-030
>gb|DR388038.1|DR388038 RTHG1_25_F10.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_25_F10_A029 5', mRNA sequence
Length = 753
Score = 133 bits (284), Expect = 2e-030
Identities = 47/58 (81%), Positives = 57/58 (98%)
Frame = -2 / +1
Query: 187 NPLRVRFHYGHPDIFDRLFHITRGGVSKASKIINLSEDIFAGFNSTLREGNVTHHEYL 14
NPL+VR HYGHPD+FDR+FHITRGG+SKAS+IIN+SEDI+AGFNSTLR+GN+THHEY+
Sbjct: 1 NPLKVRMHYGHPDVFDRIFHITRGGISKASRIINISEDIYAGFNSTLRQGNITHHEYI 174
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 361,008,169
Number of Sequences: 355925
Number of extensions: 5048714
Number of successful extensions: 30771
Number of sequences better than 1.0e-020: 2
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 10729611355
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)