TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCF2e06.yg.2.1
(319 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF666893.1|CF666893 RTCNT1_26_G09.g1_A029 Root control P... 162 6e-040
gb|BX784163.1|BX784163 BX784163 Pinus pinaster differenciat... 162 6e-040
dbj|BD235994.1| Materials and method for modification of pl... 161 2e-039
gb|DR691954.1|DR691954 EST1082041 Normalized pine embryo li... 160 2e-039
gb|DT636949.1|DT636949 EST1151880 Normalized pine embryo li... 160 2e-039
gb|CO162170.1|CO162170 FLD1_33_C12.g1_A029 Root flooded Pin... 159 6e-039
gb|CO163958.1|CO163958 FLD1_44_H06.g1_A029 Root flooded Pin... 158 1e-038
gb|DR079060.1|DR079060 RTFEPL1_8_E10.g1_A029 Roots plus add... 158 1e-038
gb|DR385600.1|DR385600 RTHG1_9_E02.g1_A029 Roots plus added... 158 1e-038
gb|AA556181.1|AA556181 36 Loblolly pine N Pinus taeda cDNA ... 154 3e-037
gb|DT636185.1|DT636185 EST1151116 Normalized pine embryo li... 143 5e-034
gb|CV033800.1|CV033800 RTNACL1_36_E06.g1_A029 Roots plus ad... 141 2e-033
gb|DR025229.1|DR025229 STRS1_70_H11.b1_A034 Shoot tip pitch... 129 7e-030
gb|BX255440.1|BX255440 BX255440 Pinus pinaster differenciat... 101 2e-021
>gb|CF666893.1|CF666893 RTCNT1_26_G09.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_26_G09_A029 5', mRNA sequence
Length = 792
Score = 162 bits (350), Expect = 6e-040
Identities = 62/102 (60%), Positives = 80/102 (78%)
Frame = +1 / +2
Query: 13 AGTEHTDIIRXPFRNENGILRXXISXXDXWPYLETYTEDVSXXIMKEMXAKPDLIIGNYS 192
+GT+H+ I+R PFR E G+LR +S D WPYLE ++EDV+ + E+ +PDLIIGNYS
Sbjct: 251 SGTQHSLILRVPFRTEKGVLRNWVSRFDVWPYLERFSEDVTNEVTAELKGQPDLIIGNYS 430
Query: 193 DGNLVATLLAHKLGVTQCTIAHALEKTKYPNSDIYLDKFDSQ 318
DGNLVA+L+AHK G+TQC IAHALEKTKYP+SDIY F+ +
Sbjct: 431 DGNLVASLIAHKQGITQCNIAHALEKTKYPDSDIYWKNFEEK 556
>gb|BX784163.1|BX784163 BX784163 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 130A08 similar to Sucrose synthase (EC
2.4.1.13), mRNA sequence
Length = 658
Score = 162 bits (350), Expect = 6e-040
Identities = 62/102 (60%), Positives = 80/102 (78%)
Frame = +1 / +3
Query: 13 AGTEHTDIIRXPFRNENGILRXXISXXDXWPYLETYTEDVSXXIMKEMXAKPDLIIGNYS 192
+GT+H+ I+R PFR E G+LR +S D WPYLE ++EDV+ + E+ +PDLIIGNYS
Sbjct: 81 SGTQHSLILRVPFRTEKGVLRNWVSRFDVWPYLERFSEDVTNEVTAELKGQPDLIIGNYS 260
Query: 193 DGNLVATLLAHKLGVTQCTIAHALEKTKYPNSDIYLDKFDSQ 318
DGNLVA+L+AHK G+TQC IAHALEKTKYP+SDIY F+ +
Sbjct: 261 DGNLVASLIAHKQGITQCNIAHALEKTKYPDSDIYWKNFEEK 386
>dbj|BD235994.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 401
Score = 161 bits (347), Expect = 2e-039
Identities = 62/99 (62%), Positives = 78/99 (78%)
Frame = +1 / +1
Query: 13 AGTEHTDIIRXPFRNENGILRXXISXXDXWPYLETYTEDVSXXIMKEMXAKPDLIIGNYS 192
+GT+H+ I+R PFR E G+LR +S D WPYLE ++EDV+ + E+ +PDLIIGNYS
Sbjct: 103 SGTQHSLILRVPFRTEKGVLRNWVSRFDVWPYLERFSEDVTNEVTAELKGQPDLIIGNYS 282
Query: 193 DGNLVATLLAHKLGVTQCTIAHALEKTKYPNSDIYLDKF 309
DGNLVA+L+AHK G+TQC IAHALEKTKYP+SDIY F
Sbjct: 283 DGNLVASLIAHKQGITQCNIAHALEKTKYPDSDIYWKNF 399
>gb|DR691954.1|DR691954 EST1082041 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADG21 3' end, mRNA sequence
Length = 740
Score = 160 bits (346), Expect = 2e-039
Identities = 62/102 (60%), Positives = 79/102 (77%)
Frame = +1 / +2
Query: 13 AGTEHTDIIRXPFRNENGILRXXISXXDXWPYLETYTEDVSXXIMKEMXAKPDLIIGNYS 192
+GT+H+ I+R PFR E G+LR +S D WPYLE ++EDVS I E+ + DLIIGNYS
Sbjct: 305 SGTQHSRILRVPFRTEKGVLRNWVSRFDVWPYLERFSEDVSNEITAELKGQADLIIGNYS 484
Query: 193 DGNLVATLLAHKLGVTQCTIAHALEKTKYPNSDIYLDKFDSQ 318
DGNLVA+L+AHK G+TQC IAHALEKTKYP+SD+Y F+ +
Sbjct: 485 DGNLVASLIAHKQGITQCNIAHALEKTKYPDSDLYWKNFEEK 610
>gb|DT636949.1|DT636949 EST1151880 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGX95 3' end, mRNA sequence
Length = 771
Score = 160 bits (346), Expect = 2e-039
Identities = 62/102 (60%), Positives = 79/102 (77%)
Frame = +1 / +1
Query: 13 AGTEHTDIIRXPFRNENGILRXXISXXDXWPYLETYTEDVSXXIMKEMXAKPDLIIGNYS 192
+GT+H+ I+R PFR E G+LR +S D WPYLE ++EDVS I E+ + DLIIGNYS
Sbjct: 313 SGTQHSRILRVPFRTEKGVLRNWVSRFDVWPYLERFSEDVSNEITAELKGQADLIIGNYS 492
Query: 193 DGNLVATLLAHKLGVTQCTIAHALEKTKYPNSDIYLDKFDSQ 318
DGNLVA+L+AHK G+TQC IAHALEKTKYP+SD+Y F+ +
Sbjct: 493 DGNLVASLIAHKQGITQCNIAHALEKTKYPDSDLYWKNFEEK 618
>gb|CO162170.1|CO162170 FLD1_33_C12.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_33_C12_A029 5', mRNA sequence
Length = 853
Score = 159 bits (343), Expect = 6e-039
Identities = 62/101 (61%), Positives = 77/101 (76%)
Frame = +1 / +1
Query: 16 GTEHTDIIRXPFRNENGILRXXISXXDXWPYLETYTEDVSXXIMKEMXAKPDLIIGNYSD 195
GT H+ I+R PFR E G+LR +S D WPYLE ++EDVS I E+ + DLIIGNYSD
Sbjct: 16 GTRHSRILRVPFRTEKGVLRNWVSRFDVWPYLERFSEDVSNEITAELKGQADLIIGNYSD 195
Query: 196 GNLVATLLAHKLGVTQCTIAHALEKTKYPNSDIYLDKFDSQ 318
GNLVA+L+AHK G+TQC IAHALEKTKYP+SD+Y F+ +
Sbjct: 196 GNLVASLIAHKQGITQCNIAHALEKTKYPDSDLYWKNFEEK 318
>gb|CO163958.1|CO163958 FLD1_44_H06.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_44_H06_A029 5', mRNA sequence
Length = 820
Score = 158 bits (340), Expect = 1e-038
Identities = 60/102 (58%), Positives = 78/102 (76%)
Frame = +1 / +3
Query: 13 AGTEHTDIIRXPFRNENGILRXXISXXDXWPYLETYTEDVSXXIMKEMXAKPDLIIGNYS 192
+GT+++ I+R PFR E G+LR +S D WPYLE + ED I E+ +PDLIIGNYS
Sbjct: 483 SGTQYSRILRVPFRTEKGVLRHWVSRFDVWPYLERFAEDAGNEITAELKGQPDLIIGNYS 662
Query: 193 DGNLVATLLAHKLGVTQCTIAHALEKTKYPNSDIYLDKFDSQ 318
DGNLVA+L+AHK G+TQC IAHALEKTKYP+SDIY +++ +
Sbjct: 663 DGNLVASLIAHKQGITQCNIAHALEKTKYPDSDIYWKRYEEK 788
>gb|DR079060.1|DR079060 RTFEPL1_8_E10.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_8_E10_A029 5', mRNA sequence
Length = 815
Score = 158 bits (340), Expect = 1e-038
Identities = 60/102 (58%), Positives = 78/102 (76%)
Frame = +1 / +3
Query: 13 AGTEHTDIIRXPFRNENGILRXXISXXDXWPYLETYTEDVSXXIMKEMXAKPDLIIGNYS 192
+GT+++ I+R PFR E G+LR +S D WPYLE + ED I E+ +PDLIIGNYS
Sbjct: 99 SGTQYSRILRVPFRTEKGVLRHWVSRFDVWPYLERFAEDAGNEITAELKGQPDLIIGNYS 278
Query: 193 DGNLVATLLAHKLGVTQCTIAHALEKTKYPNSDIYLDKFDSQ 318
DGNLVA+L+AHK G+TQC IAHALEKTKYP+SDIY +++ +
Sbjct: 279 DGNLVASLIAHKQGITQCNIAHALEKTKYPDSDIYWKRYEEK 404
>gb|DR385600.1|DR385600 RTHG1_9_E02.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_9_E02_A029 5', mRNA sequence
Length = 886
Score = 158 bits (340), Expect = 1e-038
Identities = 60/102 (58%), Positives = 78/102 (76%)
Frame = +1 / +1
Query: 13 AGTEHTDIIRXPFRNENGILRXXISXXDXWPYLETYTEDVSXXIMKEMXAKPDLIIGNYS 192
+GT+++ I+R PFR E G+LR +S D WPYLE + ED I E+ +PDLIIGNYS
Sbjct: 403 SGTQYSRILRVPFRTEKGVLRHWVSRFDVWPYLERFAEDAGNEITAELKGQPDLIIGNYS 582
Query: 193 DGNLVATLLAHKLGVTQCTIAHALEKTKYPNSDIYLDKFDSQ 318
DGNLVA+L+AHK G+TQC IAHALEKTKYP+SDIY +++ +
Sbjct: 583 DGNLVASLIAHKQGITQCNIAHALEKTKYPDSDIYWKRYEEK 708
>gb|AA556181.1|AA556181 36 Loblolly pine N Pinus taeda cDNA clone 2N5C, mRNA sequence
Length = 684
Score = 154 bits (331), Expect = 3e-037
Identities = 59/102 (57%), Positives = 76/102 (74%)
Frame = +1 / +3
Query: 13 AGTEHTDIIRXPFRNENGILRXXISXXDXWPYLETYTEDVSXXIMKEMXAKPDLIIGNYS 192
+GT+H+ I+R PF E G++R +S D WPYLE ++EDV+ I E+ PDLIIGNYS
Sbjct: 174 SGTQHSRILRVPFXTEKGVVRDWVSRFDVWPYLERFSEDVTNEIAVELKGXPDLIIGNYS 353
Query: 193 DGNLVATLLAHKLGVTQCTIAHALEKTKYPNSDIYLDKFDSQ 318
DGNLVA+L+AHK G+T C I HALEKTKYP+SDIY F+ +
Sbjct: 354 DGNLVASLMAHKQGITXCNIXHALEKTKYPDSDIYWKNFEEK 479
>gb|DT636185.1|DT636185 EST1151116 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGO90 3' end, mRNA sequence
Length = 726
Score = 143 bits (307), Expect = 5e-034
Identities = 55/95 (57%), Positives = 72/95 (75%)
Frame = +1 / +3
Query: 34 IIRXPFRNENGILRXXISXXDXWPYLETYTEDVSXXIMKEMXAKPDLIIGNYSDGNLVAT 213
I+R PF+ + G+LR +S D WPYLE ++EDVS I E+ + DLIIGNYSDGNLVA+
Sbjct: 9 ILRVPFKTDKGVLRNWVSRFDVWPYLERFSEDVSNEINAELQGQADLIIGNYSDGNLVAS 188
Query: 214 LLAHKLGVTQCTIAHALEKTKYPNSDIYLDKFDSQ 318
L+A+K G+TQC IAH LEKTKYP+SD+Y F+ +
Sbjct: 189 LIANKQGITQCNIAHVLEKTKYPDSDLYWKNFEEK 293
>gb|CV033800.1|CV033800 RTNACL1_36_E06.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_36_E06_A029 5', mRNA sequence
Length = 744
Score = 141 bits (303), Expect = 2e-033
Identities = 54/87 (62%), Positives = 69/87 (79%)
Frame = +1 / +3
Query: 13 AGTEHTDIIRXPFRNENGILRXXISXXDXWPYLETYTEDVSXXIMKEMXAKPDLIIGNYS 192
+GT+H+ I+R PFR E G+LR +S D WPYLE ++EDV+ + E+ +PDLIIGNYS
Sbjct: 483 SGTQHSLILRVPFRTEKGVLRNWVSRFDVWPYLERFSEDVTNEVTAELKGQPDLIIGNYS 662
Query: 193 DGNLVATLLAHKLGVTQCTIAHALEKT 273
DGNLVA+L+AHK G+TQC IAHALEKT
Sbjct: 663 DGNLVASLIAHKQGITQCNIAHALEKT 743
>gb|DR025229.1|DR025229 STRS1_70_H11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_70_H11_A034 3', mRNA sequence
Length = 861
Score = 129 bits (277), Expect = 7e-030
Identities = 50/79 (63%), Positives = 62/79 (78%)
Frame = +1 / -2
Query: 82 ISXXDXWPYLETYTEDVSXXIMKEMXAKPDLIIGNYSDGNLVATLLAHKLGVTQCTIAHA 261
+S D WPYLE ++EDVS I E+ + DLIIGNYSDGNLVA+L+AHK G+TQC IAHA
Sbjct: 857 VSRFDVWPYLERFSEDVSNEITAELKGQADLIIGNYSDGNLVASLIAHKQGITQCNIAHA 678
Query: 262 LEKTKYPNSDIYLDKFDSQ 318
LEKTKYP+SD+Y F+ +
Sbjct: 677 LEKTKYPDSDLYWKNFEEK 621
>gb|BX255440.1|BX255440 BX255440 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP005G10 similar to SUCROSE SYNTHASE, mRNA
sequence
Length = 603
Score = 101 bits (215), Expect = 2e-021
Identities = 39/52 (75%), Positives = 46/52 (88%)
Frame = +1 / +1
Query: 163 KPDLIIGNYSDGNLVATLLAHKLGVTQCTIAHALEKTKYPNSDIYLDKFDSQ 318
+PDLIIGNYSDGNLVA+L+AHK G+TQC IAHALEKTKYP+SDIY F+ +
Sbjct: 7 QPDLIIGNYSDGNLVASLIAHKQGITQCNIAHALEKTKYPDSDIYWKNFEEK 162
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.317 0.135 0.399
Matrix: BLOSUM62
Number of Hits to DB: 165,356,171
Number of Sequences: 355925
Number of extensions: 2204529
Number of successful extensions: 122405
Number of sequences better than 1.0e-020: 17
length of database: 72,425,745
effective HSP length: 49
effective length of database: 54,985,420
effective search space used: 3079183520
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.6 bits)