TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.064D08F020918.3.1
(559 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR094280.1|DR094280 STRR1_13_C10.g1_A033 Stem Response R... 116 1e-025
gb|DR120873.1|DR120873 RTMG1_32_B08.g1_A029 Roots minus mag... 114 4e-025
gb|CN783759.1|CN783759 EST782450 Sequencing ESTs from loblo... 107 9e-023
gb|CV138259.1|CV138259 EST849468 Sequencing ESTs from loblo... 107 9e-023
gb|DN448288.1|DN448288 EST944087 Sequencing ESTs from loblo... 107 9e-023
gb|DT625580.1|DT625580 EST1157504 Sequencing ESTs from lobl... 107 9e-023
gb|DT624539.1|DT624539 EST1158826 Sequencing ESTs from lobl... 107 9e-023
gb|CN783895.1|CN783895 EST782586 Sequencing ESTs from loblo... 106 2e-022
gb|CO411548.1|CO411548 EST841933 Sequencing ESTs from loblo... 106 2e-022
gb|CO412408.1|CO412408 EST842793 Sequencing ESTs from loblo... 106 2e-022
gb|CO414624.1|CO414624 EST845009 Sequencing ESTs from loblo... 106 2e-022
gb|CV135175.1|CV135175 EST846384 Sequencing ESTs from loblo... 106 2e-022
gb|CV136199.1|CV136199 EST847408 Sequencing ESTs from loblo... 106 2e-022
gb|DN447482.1|DN447482 EST943281 Sequencing ESTs from loblo... 106 2e-022
gb|DN452317.1|DN452317 EST948116 Sequencing ESTs from loblo... 106 2e-022
gb|DN455288.1|DN455288 EST951087 Sequencing ESTs from loblo... 106 2e-022
gb|DN456471.1|DN456471 EST952270 Sequencing ESTs from loblo... 106 2e-022
gb|DN458982.1|DN458982 EST954781 Sequencing ESTs from loblo... 106 2e-022
gb|DN463709.1|DN463709 EST959508 Sequencing ESTs from loblo... 106 2e-022
gb|DN464734.1|DN464734 EST960533 Sequencing ESTs from loblo... 106 2e-022
gb|CF386912.1|CF386912 RTDR1_9_D07.g1_A015 Loblolly pine ro... 105 2e-022
gb|CF669684.1|CF669684 RTCNT1_45_A07.g1_A029 Root control P... 105 2e-022
gb|CO364221.1|CO364221 RTK1_14_A05.g1_A029 Roots minus pota... 105 2e-022
gb|CV139163.1|CV139163 EST850372 Sequencing ESTs from loblo... 105 2e-022
gb|DR013838.1|DR013838 HEAT1_21_G09.g1_A029 Root at 37 C fo... 105 2e-022
gb|DR024798.1|DR024798 STRS1_67_B12.g1_A034 Shoot tip pitch... 105 2e-022
gb|DR024941.1|DR024941 STRS1_68_B11.g1_A034 Shoot tip pitch... 105 2e-022
gb|DR050127.1|DR050127 RTBOR1_21_A09.g1_A029 Roots plus add... 105 2e-022
gb|DR089099.1|DR089099 RTAL1_6_B11.g1_A029 Roots plus added... 105 2e-022
gb|DT626587.1|DT626587 EST1158511 Sequencing ESTs from lobl... 105 2e-022
gb|DT626735.1|DT626735 EST1159811 Sequencing ESTs from lobl... 105 2e-022
gb|DR167601.1|DR167601 RTPHOS1_19_G10.g1_A029 Roots minus p... 101 4e-021
gb|BQ701199.1|BQ701199 NXSI_023_G01_F NXSI (Nsf Xylem Side ... 98 6e-020
gb|BF610487.1|BF610487 NXSI_059_A09_F NXSI (Nsf Xylem Side ... 95 4e-019
gb|DR098178.1|DR098178 STRR1_39_D04.g1_A033 Stem Response R... 90 2e-017
gb|CF397637.1|CF397637 RTDS3_4_A07.g1_A022 Drought-stressed... 66 2e-016
gb|AL750878.1|AL750878 AL750878 RS Pinus pinaster cDNA clon... 81 6e-015
gb|DT637439.1|DT637439 EST1152370 Normalized pine embryo li... 59 1e-013
gb|DR692411.1|DR692411 EST1082499 Normalized pine embryo li... 59 1e-013
gb|CO366297.1|CO366297 RTK1_27_B09.b1_A029 Roots minus pota... 59 1e-013
gb|BG319341.1|BG319341 NXPV_026_G12_F NXPV (Nsf Xylem Plani... 60 2e-013
gb|DR683147.1|DR683147 EST1073223 Normalized pine embryo li... 59 3e-013
gb|DT631233.1|DT631233 EST1146164 Normalized pine embryo li... 59 3e-013
gb|DT627526.1|DT627526 EST1160602 Sequencing ESTs from lobl... 75 5e-013
gb|CF672556.1|CF672556 RTCNT1_64_A03.g1_A029 Root control P... 74 6e-013
gb|CO162972.1|CO162972 FLD1_38_D09.g1_A029 Root flooded Pin... 60 7e-013
gb|DR167765.1|DR167765 RTPHOS1_20_H05.g1_A029 Roots minus p... 59 7e-013
gb|CO366361.1|CO366361 RTK1_27_A03.g1_A029 Roots minus pota... 73 1e-012
gb|DR052339.1|DR052339 RTCA1_4_B02.b1_A029 Roots minus calc... 56 2e-012
gb|CX647457.1|CX647457 COLD1_16_B04.g1_A029 Root cold Pinus... 57 3e-012
gb|CO158547.1|CO158547 FLD1_7_D03.g1_A029 Root flooded Pinu... 56 4e-012
gb|CF671993.1|CF671993 RTCNT1_60_D02.g1_A029 Root control P... 57 4e-012
gb|CO198121.1|CO198121 GEO1_11_A02.g1_A029 Root gravitropis... 54 8e-012
gb|BX679906.1|BX679906 BX679906 RS Pinus pinaster cDNA clon... 54 8e-012
gb|DR015700.1|DR015700 STRS1_5_D02.b1_A034 Shoot tip pitch ... 55 1e-011
gb|DR015783.1|DR015783 STRS1_5_D02.g1_A034 Shoot tip pitch ... 55 1e-011
gb|CV035967.1|CV035967 RTNACL1_43_E10.g1_A029 Roots plus ad... 52 1e-011
gb|AW011253.1|AW011253 ST18F02 Pine TriplEx shoot tip libra... 53 1e-011
gb|DR694473.1|DR694473 EST1084565 Normalized pine embryo li... 57 2e-011
gb|DT638742.1|DT638742 EST1153673 Normalized pine embryo li... 57 2e-011
gb|DR685654.1|DR685654 EST1075731 Normalized pine embryo li... 57 2e-011
gb|CF477905.1|CF477905 RTWW3_13_C03.g1_A022 Well-watered lo... 62 2e-011
gb|DR111182.1|DR111182 RTS1_16_A02.b1_A029 Roots minus sulf... 60 2e-011
gb|BX680288.1|BX680288 BX680288 RS Pinus pinaster cDNA clon... 53 2e-011
gb|CO361899.1|CO361899 NDL2_7_G04.g1_A029 Needles control 2... 51 3e-011
gb|CO361397.1|CO361397 NDL2_4_D03.g1_A029 Needles control 2... 54 5e-011
gb|DR050898.1|DR050898 RTBOR1_26_H05.b1_A029 Roots plus add... 58 5e-011
gb|BQ290999.1|BQ290999 NXRV054_D07_F NXRV (Nsf Xylem Root w... 58 5e-011
gb|DR110104.1|DR110104 RTS1_8_C03.g1_A029 Roots minus sulfu... 51 5e-011
gb|DR014768.1|DR014768 HEAT1_51_B07.g1_A029 Root at 37 C fo... 56 6e-011
gb|DR014691.1|DR014691 HEAT1_51_B07.b1_A029 Root at 37 C fo... 56 6e-011
gb|CF667045.1|CF667045 RTCNT1_27_G11.g1_A029 Root control P... 56 6e-011
gb|DR017658.1|DR017658 STRS1_17_E03.g1_A034 Shoot tip pitch... 56 6e-011
gb|BQ701670.1|BQ701670 NXSI_118_C02_F NXSI (Nsf Xylem Side ... 56 6e-011
gb|CO361315.1|CO361315 NDL2_4_D03.b1_A029 Needles control 2... 54 9e-011
gb|CF667292.1|CF667292 RTCNT1_29_G02.b1_A029 Root control P... 58 9e-011
gb|DR744198.1|DR744198 RTCU1_20_G08.g1_A029 Roots plus adde... 51 9e-011
gb|CO367178.1|CO367178 RTK1_32_E03.g1_A029 Roots minus pota... 51 1e-010
gb|DR011035.1|DR011035 HEAT1_3_A03.b1_A029 Root at 37 C for... 51 1e-010
gb|DR023090.1|DR023090 STRS1_55_A05.g1_A034 Shoot tip pitch... 51 1e-010
gb|DR161451.1|DR161451 RTFE1_11_H03.g1_A029 Roots minus iro... 51 1e-010
gb|CF472757.1|CF472757 RTDS1_11_D09.g1_A015 Drought-stresse... 51 1e-010
gb|CF393225.1|CF393225 RTDR3_17_D12.g1_A022 Loblolly pine r... 51 1e-010
gb|DR099337.1|DR099337 STRR1_54_G08.g1_A033 Stem Response R... 51 1e-010
gb|CF391376.1|CF391376 RTDR3_1_G04.g1_A022 Loblolly pine ro... 52 1e-010
gb|BX678005.1|BX678005 BX678005 RN Pinus pinaster cDNA clon... 52 1e-010
gb|CX646616.1|CX646616 COLD1_10_A05.g1_A029 Root cold Pinus... 57 2e-010
gb|CO365658.1|CO365658 RTK1_18_A01.g1_A029 Roots minus pota... 51 2e-010
gb|CO200901.1|CO200901 RTCNT2_2_G06.b1_A029 Root control 2 ... 54 2e-010
gb|DR384837.1|DR384837 RTHG1_4_H08.g1_A029 Roots plus added... 55 2e-010
gb|CV033497.1|CV033497 RTNACL1_34_H05.g1_A029 Roots plus ad... 55 2e-010
gb|BX784172.1|BX784172 BX784172 Pinus pinaster differenciat... 55 2e-010
gb|DR089238.1|DR089238 RTAL1_7_A05.g1_A029 Roots plus added... 55 2e-010
gb|CX650454.1|CX650454 COLD1_45_F10.g1_A029 Root cold Pinus... 54 3e-010
gb|DR024153.1|DR024153 STRS1_62_E05.g1_A034 Shoot tip pitch... 54 3e-010
gb|CO176256.1|CO176256 NDL1_60_G12.g1_A029 Needles control ... 56 3e-010
gb|CF387084.1|CF387084 RTDR1_10_E10.g1_A015 Loblolly pine r... 54 3e-010
gb|CF470618.1|CF470618 RTDS1_13_H10.g1_A015 Drought-stresse... 59 3e-010
gb|CF388213.1|CF388213 RTDR2_1_B07.g1_A021 Loblolly pine ro... 54 3e-010
gb|CF669490.1|CF669490 RTCNT1_44_A10.b1_A029 Root control P... 53 3e-010
gb|DR111240.1|DR111240 RTS1_16_G05.b1_A029 Roots minus sulf... 54 3e-010
gb|CF396041.1|CF396041 RTDS2_20_C12.g1_A021 Drought-stresse... 59 3e-010
gb|BX681391.1|BX681391 BX681391 RS Pinus pinaster cDNA clon... 54 3e-010
gb|BQ696771.1|BQ696771 NXPV_045_A10_F NXPV (Nsf Xylem Plani... 65 3e-010
gb|AY356371.1| Pinus taeda R2R3-MYB transcription factor (M... 55 4e-010
gb|DR059561.1|DR059561 RTNIT1_18_A02.g1_A029 Roots minus ni... 56 4e-010
gb|DR060728.1|DR060728 RTNIT1_29_D06.g1_A029 Roots minus ni... 54 4e-010
gb|DR386238.1|DR386238 RTHG1_13_G03.g1_A029 Roots plus adde... 55 4e-010
gb|DR081462.1|DR081462 RTFEPL1_29_G04.g1_A029 Roots plus ad... 56 4e-010
gb|DR161095.1|DR161095 RTFE1_9_G03.g1_A029 Roots minus iron... 54 5e-010
gb|DR079932.1|DR079932 RTFEPL1_18_F11.g1_A029 Roots plus ad... 53 5e-010
gb|CF663690.1|CF663690 RTCNT1_4_C02.g1_A029 Root control Pi... 55 5e-010
gb|DR055413.1|DR055413 RTCA1_23_C03.g2_A029 Roots minus cal... 51 6e-010
gb|AY356372.1| Pinus taeda R2R3-MYB transcription factor (M... 52 7e-010
gb|DR057958.1|DR057958 RTNIT1_8_G05.g1_A029 Roots minus nit... 55 7e-010
gb|DR387764.1|DR387764 RTHG1_24_A11.b1_A029 Roots plus adde... 55 7e-010
gb|CF401736.1|CF401736 RTWW1_14_C05.g1_A015 Well-watered lo... 55 7e-010
gb|DR387774.1|DR387774 RTHG1_24_B11.b1_A029 Roots plus adde... 55 7e-010
gb|DR161238.1|DR161238 RTFE1_10_D10.g1_A029 Roots minus iro... 52 7e-010
gb|CF388652.1|CF388652 RTDR2_4_A10.g1_A021 Loblolly pine ro... 55 7e-010
gb|CV034082.1|CV034082 RTNACL1_38_B11.g1_A029 Roots plus ad... 55 7e-010
gb|DR178268.1|DR178268 RTMNUT1_10_C01.g1_A029 Roots minus m... 55 7e-010
gb|DR071883.1|DR071883 RTDK1_22_E02.g1_A029 Roots, dark Pin... 52 7e-010
gb|DR020720.1|DR020720 STRS1_38_G12.g1_A034 Shoot tip pitch... 53 7e-010
gb|DR111427.1|DR111427 RTS1_17_F02.g1_A029 Roots minus sulf... 55 7e-010
gb|DR168212.1|DR168212 RTPHOS1_23_H12.g1_A029 Roots minus p... 55 7e-010
gb|BF517838.1|BF517838 NXSI_027_G09_F NXSI (Nsf Xylem Side ... 53 7e-010
gb|DR683171.1|DR683171 EST1073247 Normalized pine embryo li... 59 1e-009
gb|DR117116.1|DR117116 RTMG1_4_G10.g1_A029 Roots minus magn... 52 1e-009
gb|DT631296.1|DT631296 EST1146227 Normalized pine embryo li... 59 1e-009
gb|DR683172.1|DR683172 EST1073248 Normalized pine embryo li... 59 1e-009
gb|CX648418.1|CX648418 COLD1_28_B12.g1_A029 Root cold Pinus... 55 1e-009
gb|CO368386.1|CO368386 RTK1_40_G08.b1_A029 Roots minus pota... 51 2e-009
gb|DR094442.1|DR094442 STRR1_14_D03.g1_A033 Stem Response R... 52 2e-009
gb|CO362169.1|CO362169 RTK1_1_F07.g1_A029 Roots minus potas... 51 2e-009
gb|DR069928.1|DR069928 RTDK1_10_F06.b1_A029 Roots, dark Pin... 52 2e-009
gb|CF391868.1|CF391868 RTDR3_10_B04.g1_A022 Loblolly pine r... 52 2e-009
gb|DR072123.1|DR072123 RTDK1_24_F01.b1_A029 Roots, dark Pin... 52 2e-009
gb|AW065064.1|AW065064 ST39B10 Pine TriplEx shoot tip libra... 54 2e-009
gb|DR051127.1|DR051127 RTBOR1_27_G08.g1_A029 Roots plus add... 53 2e-009
gb|CF399612.1|CF399612 RTDS3_26_H01.g1_A022 Drought-stresse... 52 2e-009
gb|DR058733.1|DR058733 RTNIT1_13_C07.g1_A029 Roots minus ni... 53 2e-009
gb|AW065119.1|AW065119 ST39H05 Pine TriplEx shoot tip libra... 53 2e-009
gb|CF395899.1|CF395899 RTDS2_19_G06.g1_A021 Drought-stresse... 51 2e-009
gb|DT639133.1|DT639133 EST1154064 Normalized pine embryo li... 53 3e-009
gb|DR694940.1|DR694940 EST1085033 Normalized pine embryo li... 53 3e-009
gb|DR111301.1|DR111301 RTS1_16_F03.g1_A029 Roots minus sulf... 50 3e-009
gb|DR167401.1|DR167401 RTPHOS1_18_C09.g1_A029 Roots minus p... 53 4e-009
gb|DR164052.1|DR164052 RTFE1_46_B11.g1_A029 Roots minus iro... 52 4e-009
gb|DR384689.1|DR384689 RTHG1_3_H06.g1_A029 Roots plus added... 53 4e-009
gb|CV034623.1|CV034623 RTNACL1_10_A11.g1_A029 Roots plus ad... 51 4e-009
gb|DR384384.1|DR384384 RTHG1_1_H06.g1_A029 Roots plus added... 53 4e-009
gb|DR098778.1|DR098778 STRR1_47_G01.g1_A033 Stem Response R... 53 4e-009
gb|CF667523.1|CF667523 RTCNT1_30_H07.g1_A029 Root control P... 48 4e-009
gb|CF395727.1|CF395727 RTDS2_16_B07.g1_A021 Drought-stresse... 51 6e-009
gb|CF397272.1|CF397272 RTDS3_2_C01.g1_A022 Drought-stressed... 51 6e-009
gb|DR014928.1|DR014928 HEAT1_52_A11.g1_A029 Root at 37 C fo... 51 8e-009
gb|CF668816.1|CF668816 RTCNT1_38_G11.g1_A029 Root control P... 51 8e-009
gb|DR167893.1|DR167893 RTPHOS1_21_G02.g1_A029 Roots minus p... 60 9e-009
gb|CF475091.1|CF475091 RTWW2_5_F10.g1_A021 Well-watered lob... 34 1e-008
gb|BQ634727.1|BQ634727 NXRV072_E09_F NXRV (Nsf Xylem Root w... 50 1e-008
gb|AW064634.1|AW064634 ST33H05 Pine TriplEx shoot tip libra... 43 1e-008
gb|CO165016.1|CO165016 FLD1_51_F09.g1_A029 Root flooded Pin... 59 2e-008
gb|CO164542.1|CO164542 FLD1_48_E08.g1_A029 Root flooded Pin... 59 3e-008
gb|DN463162.1|DN463162 EST958961 Sequencing ESTs from loblo... 59 3e-008
gb|CO163969.1|CO163969 FLD1_45_A11.b1_A029 Root flooded Pin... 51 4e-008
gb|CF402623.1|CF402623 RTWW1_21_B11.g1_A015 Well-watered lo... 55 4e-008
gb|CF389081.1|CF389081 RTDR2_13_A10.g1_A021 Loblolly pine r... 55 4e-008
gb|CF391408.1|CF391408 RTDR3_1_E10.g1_A022 Loblolly pine ro... 48 5e-008
gb|DT633531.1|DT633531 EST1148462 Normalized pine embryo li... 44 5e-008
gb|CO368639.1|CO368639 RTK1_41_H02.g1_A029 Roots minus pota... 44 5e-008
gb|DR686108.1|DR686108 EST1076186 Normalized pine embryo li... 44 5e-008
gb|DR744906.1|DR744906 RTCU1_25_E06.g1_A029 Roots plus adde... 44 5e-008
gb|CF394327.1|CF394327 RTDS2_4_B08.g1_A021 Drought-stressed... 48 5e-008
gb|DR015810.1|DR015810 STRS1_5_F07.g1_A034 Shoot tip pitch ... 43 7e-008
gb|DT633408.1|DT633408 EST1148339 Normalized pine embryo li... 46 7e-008
gb|DR686505.1|DR686505 EST1076583 Normalized pine embryo li... 46 7e-008
gb|CO162411.1|CO162411 FLD1_35_D02.b1_A029 Root flooded Pin... 57 1e-007
gb|CO361388.1|CO361388 NDL2_4_C06.g1_A029 Needles control 2... 56 2e-007
gb|CF663743.1|CF663743 RTCNT1_4_H05.g1_A029 Root control Pi... 55 4e-007
gb|CF385274.1|CF385274 RTDR1_2_D01.g1_A015 Loblolly pine ro... 55 5e-007
gb|CF400460.1|CF400460 RTWW1_5_H12.g1_A015 Well-watered lob... 55 5e-007
gb|DR179654.1|DR179654 RTMNUT1_23_B05.g2_A029 Roots minus m... 55 5e-007
gb|CF401126.1|CF401126 RTWW1_10_H02.b1_A015 Well-watered lo... 54 7e-007
gb|DR117421.1|DR117421 RTMG1_6_G12.g1_A029 Roots minus magn... 54 7e-007
gb|CF396536.1|CF396536 RTDS2_22_H07.g1_A021 Drought-stresse... 43 1e-006
gb|CN852309.1|CN852309 Pi148-1 Salicylate-treated slash pin... 52 1e-006
gb|CO170303.1|CO170303 NDL1_13_D05.b1_A029 Needles control ... 53 1e-006
gb|DR020641.1|DR020641 STRS1_38_G12.b1_A034 Shoot tip pitch... 53 1e-006
gb|DR096412.1|DR096412 STRR1_27_G02.g1_A033 Stem Response R... 53 1e-006
gb|DR109956.1|DR109956 RTS1_1_B02.b1_A029 Roots minus sulfu... 53 1e-006
gb|DR101609.1|DR101609 STRR1_74_C02.g1_A033 Stem Response R... 53 2e-006
gb|CO172303.1|CO172303 NDL1_28_G10.g1_A029 Needles control ... 52 3e-006
gb|DR694707.1|DR694707 EST1084799 Normalized pine embryo li... 52 3e-006
gb|DT638995.1|DT638995 EST1153926 Normalized pine embryo li... 52 3e-006
gb|CO173249.1|CO173249 NDL1_35_A08.b1_A029 Needles control ... 52 3e-006
gb|CO201585.1|CO201585 RTCNT2_6_F07.g1_A029 Root control 2 ... 51 6e-006
gb|DR163874.1|DR163874 RTFE1_45_A12.g1_A029 Roots minus iro... 51 6e-006
gb|DR746217.1|DR746217 RTCU1_35_B06.g1_A029 Roots plus adde... 51 6e-006
gb|BE520012.1|BE520012 NXCI_028_B03_F NXCI (Nsf Xylem Compr... 51 9e-006
gb|CF393224.1|CF393224 RTDR3_17_B01.g1_A022 Loblolly pine r... 34 1e-005
gb|DT632905.1|DT632905 EST1147836 Normalized pine embryo li... 37 2e-005
gb|CO173370.1|CO173370 NDL1_35_F03.g1_A029 Needles control ... 49 2e-005
gb|DR101544.1|DR101544 STRR1_74_C02.b1_A033 Stem Response R... 49 2e-005
gb|DR120088.1|DR120088 RTMG1_27_A10.g2_A029 Roots minus mag... 49 3e-005
gb|DR167833.1|DR167833 RTPHOS1_21_A06.g1_A029 Roots minus p... 49 3e-005
gb|BX680071.1|BX680071 BX680071 RS Pinus pinaster cDNA clon... 48 4e-005
gb|CD025405.1|CD025405 NXSI_051_D05_F NXSI (Nsf Xylem Side ... 48 6e-005
gb|CO173319.1|CO173319 NDL1_35_A08.g1_A029 Needles control ... 48 6e-005
gb|DR079868.1|DR079868 RTFEPL1_18_F11.b1_A029 Roots plus ad... 48 6e-005
gb|DR052727.1|DR052727 RTCA1_6_B03.g1_A029 Roots minus calc... 47 8e-005
gb|CF395399.1|CF395399 RTDS2_11_H08.g1_A021 Drought-stresse... 46 1e-004
gb|DR011876.1|DR011876 HEAT1_8_B02.g1_A029 Root at 37 C for... 46 2e-004
gb|DR017577.1|DR017577 STRS1_17_E03.b1_A034 Shoot tip pitch... 46 2e-004
gb|CX714163.1|CX714163 RTPQ1_18_D03.g1_A032 Roots treated w... 34 2e-004
gb|CX651169.1|CX651169 COLD1_50_D03.g1_A029 Root cold Pinus... 35 3e-004
gb|CV034962.1|CV034962 RTNACL1_12_F05.g1_A029 Roots plus ad... 34 3e-004
gb|BX250447.1|BX250447 BX250447 Pinus pinaster differenciat... 45 5e-004
gb|CF476017.1|CF476017 RTWW2_16_B11.g1_A021 Well-watered lo... 45 5e-004
gb|DR688762.1|DR688762 EST1078847 Normalized pine embryo li... 44 7e-004
gb|DR117679.1|DR117679 RTMG1_8_A11.g1_A029 Roots minus magn... 43 0.001
gb|BF609979.1|BF609979 NXSI_053_C11_F NXSI (Nsf Xylem Side ... 31 0.001
gb|CF398623.1|CF398623 RTDS3_13_E02.b1_A022 Drought-stresse... 43 0.002
gb|CF387233.1|CF387233 RTDR1_11_B07.g1_A015 Loblolly pine r... 42 0.003
gb|CF390133.1|CF390133 RTDR2_12_C07.g1_A021 Loblolly pine r... 31 0.004
gb|BE241255.1|BE241255 NXNV_183_D12_F Nsf Xylem Normal wood... 42 0.004
gb|CO162486.1|CO162486 FLD1_35_D02.g1_A029 Root flooded Pin... 42 0.004
gb|DR117678.1|DR117678 RTMG1_8_A10.g1_A029 Roots minus magn... 42 0.004
gb|CO198686.1|CO198686 GEO1_15_F03.g1_A029 Root gravitropis... 41 0.006
gb|CX648339.1|CX648339 COLD1_28_B12.b1_A029 Root cold Pinus... 41 0.006
gb|DR684834.1|DR684834 EST1074911 Normalized pine embryo li... 41 0.006
gb|DT632078.1|DT632078 EST1147009 Normalized pine embryo li... 41 0.006
gb|CF474496.1|CF474496 RTWW2_9_D02.b1_A021 Well-watered lob... 41 0.008
gb|DR177927.1|DR177927 RTMNUT1_8_E11.b1_A029 Roots minus mi... 41 0.008
gb|BG319376.1|BG319376 NXPV_027_C05_F NXPV (Nsf Xylem Plani... 29 0.014
gb|CF672338.1|CF672338 RTCNT1_62_H04.g1_A029 Root control P... 29 0.019
gb|BX000680.1|BX000680 BX000680 Pinus pinaster xylem Pinus ... 39 0.021
gb|BX679518.1|BX679518 BX679518 RS Pinus pinaster cDNA clon... 39 0.021
gb|DR386158.1|DR386158 RTHG1_13_G03.b1_A029 Roots plus adde... 39 0.021
gb|CF665728.1|CF665728 RTCNT1_18_C05.b1_A029 Root control P... 39 0.028
gb|CO367106.1|CO367106 RTK1_32_E03.b1_A029 Roots minus pota... 39 0.028
gb|DR015297.1|DR015297 STRS1_2_D10.g1_A034 Shoot tip pitch ... 39 0.028
gb|DR059765.1|DR059765 RTNIT1_19_D08.g1_A029 Roots minus ni... 39 0.028
gb|CF470298.1|CF470298 RTDS1_18_B11.g1_A015 Drought-stresse... 29 0.046
gb|CV033833.1|CV033833 RTNACL1_36_H06.g1_A029 Roots plus ad... 29 0.046
gb|DR112102.1|DR112102 RTS1_25_H07.g1_A029 Roots minus sulf... 29 0.046
gb|CF389453.1|CF389453 RTDR2_7_C09.g1_A021 Loblolly pine ro... 38 0.053
gb|DR682272.1|DR682272 EST1072347 Normalized pine embryo li... 38 0.053
gb|DR683470.1|DR683470 EST1073546 Normalized pine embryo li... 38 0.053
gb|DT630777.1|DT630777 EST1145708 Normalized pine embryo li... 38 0.053
gb|DT631426.1|DT631426 EST1146357 Normalized pine embryo li... 38 0.053
gb|DN448127.1|DN448127 EST943926 Sequencing ESTs from loblo... 37 0.062
gb|DT624424.1|DT624424 EST1158699 Sequencing ESTs from lobl... 37 0.062
gb|DR096185.1|DR096185 STRR1_26_G11.b1_A033 Stem Response R... 38 0.072
gb|CF396247.1|CF396247 RTDS2_15_B11.g1_A021 Drought-stresse... 32 0.082
gb|AL750032.1|AL750032 AL750032 AS Pinus pinaster cDNA clon... 37 0.098
gb|AL750151.1|AL750151 AL750151 AS Pinus pinaster cDNA clon... 37 0.098
gb|CF470509.1|CF470509 RTDS1_13_H10.b1_A015 Drought-stresse... 37 0.098
gb|BX680795.1|BX680795 BX680795 RS Pinus pinaster cDNA clon... 35 0.12
gb|CF403056.1|CF403056 RTWW1_24_G08.g1_A015 Well-watered lo... 37 0.13
gb|CV135257.1|CV135257 EST846466 Sequencing ESTs from loblo... 36 0.16
gb|BG040698.1|BG040698 NXSI_114_A12_F NXSI (Nsf Xylem Side ... 36 0.25
gb|CF396652.1|CF396652 RTDS2_23_D03.b1_A021 Drought-stresse... 36 0.25
gb|CF399868.1|CF399868 RTWW1_1_H01.g1_A015 Well-watered lob... 36 0.25
gb|CO200971.1|CO200971 RTCNT2_2_F10.g1_A029 Root control 2 ... 36 0.25
gb|DR684368.1|DR684368 EST1074445 Normalized pine embryo li... 36 0.25
gb|DR100867.1|DR100867 STRR1_68_H01.g1_A033 Stem Response R... 28 0.38
gb|CO362724.1|CO362724 RTK1_5_A02.g1_A029 Roots minus potas... 34 0.63
gb|CO164694.1|CO164694 FLD1_49_E04.g1_A029 Root flooded Pin... 33 1.2
gb|CV034016.1|CV034016 RTNACL1_38_B11.b1_A029 Roots plus ad... 33 1.2
gb|CX646566.1|CX646566 COLD1_10_D06.b1_A029 Root cold Pinus... 33 1.2
gb|DR694239.1|DR694239 EST1084330 Normalized pine embryo li... 33 1.5
gb|DT638541.1|DT638541 EST1153472 Normalized pine embryo li... 33 1.5
gb|CD020726.1|CD020726 NXNV_088_G08_F Nsf Xylem Normal wood... 33 1.6
gb|CD025338.1|CD025338 NXSI_044_F04_F NXSI (Nsf Xylem Side ... 33 1.6
gb|CV136733.1|CV136733 EST847942 Sequencing ESTs from loblo... 33 1.6
gb|CV137710.1|CV137710 EST848919 Sequencing ESTs from loblo... 33 1.6
gb|CV144529.1|CV144529 EST855738 Sequencing ESTs from loblo... 33 1.6
gb|DR052055.1|DR052055 RTCA1_2_D08.b1_A029 Roots minus calc... 33 1.6
gb|DR052135.1|DR052135 RTCA1_2_D08.g1_A029 Roots minus calc... 33 1.6
gb|DR052207.1|DR052207 RTCA1_3_C09.b1_A029 Roots minus calc... 33 1.6
gb|DR052278.1|DR052278 RTCA1_3_C09.g1_A029 Roots minus calc... 33 1.6
gb|DR167741.1|DR167741 RTPHOS1_20_F02.g1_A029 Roots minus p... 33 1.6
gb|DR388525.1|DR388525 RTHG1_28_F12.g1_A029 Roots plus adde... 33 1.6
gb|DR693659.1|DR693659 EST1083748 Normalized pine embryo li... 33 1.6
gb|DT626243.1|DT626243 EST1158167 Sequencing ESTs from lobl... 33 1.6
gb|DT626461.1|DT626461 EST1158385 Sequencing ESTs from lobl... 33 1.6
gb|DR690028.1|DR690028 EST1080114 Normalized pine embryo li... 33 2.2
gb|DT635793.1|DT635793 EST1150724 Normalized pine embryo li... 33 2.2
gb|CO200612.1|CO200612 GEO2_8_B02.g1_A032 Root gravitropism... 32 2.8
gb|DR120011.1|DR120011 RTMG1_27_A10.b1_A029 Roots minus mag... 32 3.0
gb|DN609125.1|DN609125 EST962175 Subtracted pine embryo lib... 31 3.9
gb|DR691612.1|DR691612 EST1081699 Normalized pine embryo li... 31 3.9
gb|CV034688.1|CV034688 RTNACL1_10_H11.g1_A029 Roots plus ad... 32 4.1
gb|CF388016.1|CF388016 RTDR1_17_C10.g1_A015 Loblolly pine r... 31 5.6
gb|CN783760.1|CN783760 EST782451 Sequencing ESTs from loblo... 30 7.3
gb|DR692538.1|DR692538 EST1082626 Normalized pine embryo li... 30 7.3
gb|DT625592.1|DT625592 EST1157516 Sequencing ESTs from lobl... 30 7.3
gb|BX784067.1|BX784067 BX784067 Pinus pinaster differenciat... 31 7.6
gb|CO367346.1|CO367346 RTK1_33_F05.g1_A029 Roots minus pota... 31 7.6
gb|CV139175.1|CV139175 EST850384 Sequencing ESTs from loblo... 31 7.6
gb|CV146762.1|CV146762 EST857971 Sequencing ESTs from loblo... 31 7.6
gb|DN459058.1|DN459058 EST954857 Sequencing ESTs from loblo... 31 7.6
gb|DR057870.1|DR057870 RTNIT1_8_G05.b1_A029 Roots minus nit... 31 7.6
gb|DT624386.1|DT624386 EST1158661 Sequencing ESTs from lobl... 31 7.6
gb|DT624981.1|DT624981 EST1159256 Sequencing ESTs from lobl... 31 7.6
gb|DT626644.1|DT626644 EST1159720 Sequencing ESTs from lobl... 31 7.6
gb|CO157907.1|CO157907 FLD1_3_B03.b1_A029 Root flooded Pinu... 27 7.8
>gb|DR094280.1|DR094280 STRR1_13_C10.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_13_C10_A033 5', mRNA sequence
Length = 826
Score = 116 bits (253), Expect = 1e-025
Identities = 48/146 (32%), Positives = 82/146 (56%)
Frame = +1 / +1
Query: 118 SKSDEVAEDMLQSNIPHETVGLCQGVESEEIEGPPHKKIVQNFTESSSSKNKKHRWSSEE 297
SKS + ++S+ H + + + G ++++ + S + W E
Sbjct: 7 SKSWTIQMGSMESSSGHHSAKVSSDNNNMGNLGDSNEEVENSVDGVQSRLCARGHWRPAE 186
Query: 298 DEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQ 477
D LK++V ++G +NW IA + GR+ SC RW LDP IN+ P+S+++E +L+ A
Sbjct: 187 DAKLKELVSQYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRPFSEEDEEKLLAAH 366
Query: 478 QVYGNKWCKMVKHFPGRTNDALKEHW 555
++YGNKW + + FPGRT++A+K HW
Sbjct: 367 RLYGNKWAMIARLFPGRTDNAVKNHW 444
Score = 34.8 bits (71), Expect = 0.30
Identities = 30/88 (34%), Positives = 36/88 (40%)
Frame = -3 / -3
Query: 554 QCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLERHELAF 375
Q +A VLPG I+ HLFP A + SSS +G I GS H
Sbjct: 443 QWFFTALSVLPGNKRAIMAHLFPYKRWAASSFSSSSSLKGLRLILGSN*LNHRSLQLFPD 264
Query: 374 RPGIAHAIVRQFFVPCLFTICFSASSSS 291
P AI QF P T S +SS+
Sbjct: 263 LPSSFSAIRFQF*GPYCDTNSLSLASSA 180
>gb|DR120873.1|DR120873 RTMG1_32_B08.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_32_B08_A029 5', mRNA sequence
Length = 851
Score = 114 bits (249), Expect = 4e-025
Identities = 47/145 (32%), Positives = 81/145 (55%)
Frame = +1 / +2
Query: 121 KSDEVAEDMLQSNIPHETVGLCQGVESEEIEGPPHKKIVQNFTESSSSKNKKHRWSSEED 300
KS + ++S+ H + + + G ++++ + S + W ED
Sbjct: 287 KSWTIQMGSMESSSGHHSTKVSSDNNNMGNLGDSNEEVENSVDGVQSRLCARGHWRPAED 466
Query: 301 EALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQ 480
LK++V ++G +NW IA + GR+ SC RW LDP IN+ P+S+++E +L+ A +
Sbjct: 467 AKLKELVSQYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRPFSEEDEEKLLAAHR 646
Query: 481 VYGNKWCKMVKHFPGRTNDALKEHW 555
+YGNKW + + FPGRT++A+K HW
Sbjct: 647 LYGNKWAMIARLFPGRTDNAVKNHW 721
Score = 34.8 bits (71), Expect = 0.30
Identities = 30/88 (34%), Positives = 36/88 (40%)
Frame = -3 / -3
Query: 554 QCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLERHELAF 375
Q +A VLPG I+ HLFP A + SSS +G I GS H
Sbjct: 720 QWFFTALSVLPGNKRAIMAHLFPYKRWAASSFSSSSSLKGLRLILGSN*LNHRSLQLFPD 541
Query: 374 RPGIAHAIVRQFFVPCLFTICFSASSSS 291
P AI QF P T S +SS+
Sbjct: 540 LPSSFSAIRFQF*GPYCDTNSLSLASSA 457
>gb|CN783759.1|CN783759 EST782450 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAAC68 5' end, mRNA sequence
Length = 872
Score = 107 bits (232), Expect = 9e-023
Identities = 39/94 (41%), Positives = 59/94 (62%)
Frame = +1 / +1
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EED AL+ V+++G +NW I+ AIPGR+ SC RW L P + P++ +E
Sbjct: 154 KGPWSPEEDAALQHFVQKYGPRNWSLISKAIPGRSGKSCRLRWCNQLSPQVEHRPFTPEE 333
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ ++RA +GNKW + + GRT++A+K HW
Sbjct: 334 DATIVRAHAQHGNKWATIARMLSGRTDNAIKNHW 435
Score = 41.6 bits (86), Expect = 0.003
Identities = 33/89 (37%), Positives = 39/89 (43%)
Frame = -3 / -1
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLERHELA 378
FQ L A VLP I+ HL P A ++SS +G G H +L
Sbjct: 437 FQWFLIALSVLPLSMRAIVAHLLPCWAWALTIVASSSGVKGRCSTWGLSWLHHRSLQDLP 258
Query: 377 FRPGIAHAIVRQFFVPCLFTICFSASSSS 291
RPGIA I Q P T C SA+SSS
Sbjct: 257 DRPGIALLIRDQLRGPYF*TKCCSAASSS 171
>gb|CV138259.1|CV138259 EST849468 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIB084 5' end, mRNA sequence
Length = 847
Score = 107 bits (232), Expect = 9e-023
Identities = 39/94 (41%), Positives = 59/94 (62%)
Frame = +1 / +1
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EED AL+ V+++G +NW I+ AIPGR+ SC RW L P + P++ +E
Sbjct: 151 KGPWSPEEDAALQHFVQKYGPRNWSLISKAIPGRSGKSCRLRWCNQLSPQVEHRPFTPEE 330
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ ++RA +GNKW + + GRT++A+K HW
Sbjct: 331 DATIVRAHAQHGNKWATIARMLSGRTDNAIKNHW 432
Score = 41.6 bits (86), Expect = 0.003
Identities = 33/89 (37%), Positives = 39/89 (43%)
Frame = -3 / -3
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLERHELA 378
FQ L A VLP I+ HL P A ++SS +G G H +L
Sbjct: 434 FQWFLIALSVLPLSMRAIVAHLLPCWAWALTIVASSSGVKGRCSTWGLSWLHHRSLQDLP 255
Query: 377 FRPGIAHAIVRQFFVPCLFTICFSASSSS 291
RPGIA I Q P T C SA+SSS
Sbjct: 254 DRPGIALLIRDQLRGPYF*TKCCSAASSS 168
>gb|DN448288.1|DN448288 EST944087 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIC315 5' end, mRNA sequence
Length = 967
Score = 107 bits (232), Expect = 9e-023
Identities = 39/94 (41%), Positives = 59/94 (62%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EED AL+ V+++G +NW I+ AIPGR+ SC RW L P + P++ +E
Sbjct: 171 KGPWSPEEDAALQHFVQKYGPRNWSLISKAIPGRSGKSCRLRWCNQLSPQVEHRPFTPEE 350
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ ++RA +GNKW + + GRT++A+K HW
Sbjct: 351 DATIVRAHAQHGNKWATIARMLSGRTDNAIKNHW 452
Score = 41.6 bits (86), Expect = 0.003
Identities = 33/89 (37%), Positives = 39/89 (43%)
Frame = -3 / -1
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLERHELA 378
FQ L A VLP I+ HL P A ++SS +G G H +L
Sbjct: 454 FQWFLIALSVLPLSMRAIVAHLLPCWAWALTIVASSSGVKGRCSTWGLSWLHHRSLQDLP 275
Query: 377 FRPGIAHAIVRQFFVPCLFTICFSASSSS 291
RPGIA I Q P T C SA+SSS
Sbjct: 274 DRPGIALLIRDQLRGPYF*TKCCSAASSS 188
>gb|DT625580.1|DT625580 EST1157504 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA149 5' end, mRNA sequence
Length = 889
Score = 107 bits (232), Expect = 9e-023
Identities = 39/94 (41%), Positives = 59/94 (62%)
Frame = +1 / +1
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EED AL+ V+++G +NW I+ AIPGR+ SC RW L P + P++ +E
Sbjct: 154 KGPWSPEEDAALQHFVQKYGPRNWSLISKAIPGRSGKSCRLRWCNQLSPQVEHRPFTPEE 333
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ ++RA +GNKW + + GRT++A+K HW
Sbjct: 334 DATIVRAHAQHGNKWATIARMLSGRTDNAIKNHW 435
Score = 41.6 bits (86), Expect = 0.003
Identities = 33/89 (37%), Positives = 39/89 (43%)
Frame = -3 / -3
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLERHELA 378
FQ L A VLP I+ HL P A ++SS +G G H +L
Sbjct: 437 FQWFLIALSVLPLSMRAIVAHLLPCWAWALTIVASSSGVKGRCSTWGLSWLHHRSLQDLP 258
Query: 377 FRPGIAHAIVRQFFVPCLFTICFSASSSS 291
RPGIA I Q P T C SA+SSS
Sbjct: 257 DRPGIALLIRDQLRGPYF*TKCCSAASSS 171
>gb|DT624539.1|DT624539 EST1158826 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAF82 5' end, mRNA sequence
Length = 754
Score = 107 bits (232), Expect = 9e-023
Identities = 39/94 (41%), Positives = 59/94 (62%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EED AL+ V+++G +NW I+ AIPGR+ SC RW L P + P++ +E
Sbjct: 171 KGPWSPEEDAALQHFVQKYGPRNWSLISKAIPGRSGKSCRLRWCNQLSPQVEHRPFTPEE 350
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ ++RA +GNKW + + GRT++A+K HW
Sbjct: 351 DATIVRAHAQHGNKWATIARMLSGRTDNAIKNHW 452
Score = 41.6 bits (86), Expect = 0.003
Identities = 33/89 (37%), Positives = 39/89 (43%)
Frame = -3 / -1
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLERHELA 378
FQ L A VLP I+ HL P A ++SS +G G H +L
Sbjct: 454 FQWFLIALSVLPLSMRAIVAHLLPCWAWALTIVASSSGVKGRCSTWGLSWLHHRSLQDLP 275
Query: 377 FRPGIAHAIVRQFFVPCLFTICFSASSSS 291
RPGIA I Q P T C SA+SSS
Sbjct: 274 DRPGIALLIRDQLRGPYF*TKCCSAASSS 188
>gb|CN783895.1|CN783895 EST782586 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAAE59 5' end, mRNA sequence
Length = 937
Score = 106 bits (230), Expect = 2e-022
Identities = 39/94 (41%), Positives = 59/94 (62%)
Frame = +1 / +1
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EED +L ++V+++G +NW I+ IPGR+ SC RW L P + P+S E
Sbjct: 166 KGPWSPEEDASLHKLVEKYGPRNWSQISRGIPGRSGKSCRLRWCNQLSPQVEHRPFSPHE 345
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ +I+A +GNKW + + PGRT++A+K HW
Sbjct: 346 DATIIQAHARHGNKWATIARLLPGRTDNAIKNHW 447
Score = 42.4 bits (88), Expect = 0.001
Identities = 32/92 (34%), Positives = 40/92 (43%)
Frame = -3 / -3
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLERHELA 378
FQ L A V PG+ I+ HL P A + ++SSC +G G H +
Sbjct: 449 FQWFLIALSVRPGRRRAIVAHLLPCRAWACMMVASSCGLKGRCSTWGLSWLHHRSLQDFP 270
Query: 377 FRPGIAHAIVRQFFVPCLFTICFSASSSSDDH 282
RPGI I QF P T S +SSS H
Sbjct: 269 ERPGIPLLI*DQFRGPYFSTSLCSDASSSGLH 174
>gb|CO411548.1|CO411548 EST841933 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIALL67 5' end, mRNA sequence
Length = 731
Score = 106 bits (230), Expect = 2e-022
Identities = 39/94 (41%), Positives = 59/94 (62%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EED +L ++V+++G +NW I+ IPGR+ SC RW L P + P+S E
Sbjct: 159 KGPWSPEEDASLHKLVEKYGPRNWSQISRGIPGRSGKSCRLRWCNQLSPQVEHRPFSPHE 338
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ +I+A +GNKW + + PGRT++A+K HW
Sbjct: 339 DATIIQAHARHGNKWATIARLLPGRTDNAIKNHW 440
Score = 42.4 bits (88), Expect = 0.001
Identities = 32/92 (34%), Positives = 40/92 (43%)
Frame = -3 / -2
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLERHELA 378
FQ L A V PG+ I+ HL P A + ++SSC +G G H +
Sbjct: 442 FQWFLIALSVRPGRRRAIVAHLLPCRAWACMMVASSCGLKGRCSTWGLSWLHHRSLQDFP 263
Query: 377 FRPGIAHAIVRQFFVPCLFTICFSASSSSDDH 282
RPGI I QF P T S +SSS H
Sbjct: 262 ERPGIPLLI*DQFRGPYFSTSLCSDASSSGLH 167
>gb|CO412408.1|CO412408 EST842793 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIALW92 5' end, mRNA sequence
Length = 880
Score = 106 bits (230), Expect = 2e-022
Identities = 39/94 (41%), Positives = 59/94 (62%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EED +L ++V+++G +NW I+ IPGR+ SC RW L P + P+S E
Sbjct: 159 KGPWSPEEDASLHKLVEKYGPRNWSQISRGIPGRSGKSCRLRWCNQLSPQVEHRPFSPHE 338
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ +I+A +GNKW + + PGRT++A+K HW
Sbjct: 339 DATIIQAHARHGNKWATIARLLPGRTDNAIKNHW 440
Score = 42.4 bits (88), Expect = 0.001
Identities = 32/92 (34%), Positives = 40/92 (43%)
Frame = -3 / -1
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLERHELA 378
FQ L A V PG+ I+ HL P A + ++SSC +G G H +
Sbjct: 442 FQWFLIALSVRPGRRRAIVAHLLPCRAWACMMVASSCGLKGRCSTWGLSWLHHRSLQDFP 263
Query: 377 FRPGIAHAIVRQFFVPCLFTICFSASSSSDDH 282
RPGI I QF P T S +SSS H
Sbjct: 262 ERPGIPLLI*DQFRGPYFSTSLCSDASSSGLH 167
>gb|CO414624.1|CO414624 EST845009 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAMQ84 5' end, mRNA sequence
Length = 700
Score = 106 bits (230), Expect = 2e-022
Identities = 39/94 (41%), Positives = 59/94 (62%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EED +L ++V+++G +NW I+ IPGR+ SC RW L P + P+S E
Sbjct: 159 KGPWSPEEDASLHKLVEKYGPRNWSQISRGIPGRSGKSCRLRWCNQLSPQVEHRPFSPHE 338
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ +I+A +GNKW + + PGRT++A+K HW
Sbjct: 339 DATIIQAHARHGNKWATIARLLPGRTDNAIKNHW 440
Score = 42.4 bits (88), Expect = 0.001
Identities = 32/92 (34%), Positives = 40/92 (43%)
Frame = -3 / -1
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLERHELA 378
FQ L A V PG+ I+ HL P A + ++SSC +G G H +
Sbjct: 442 FQWFLIALSVRPGRRRAIVAHLLPCRAWACMMVASSCGLKGRCSTWGLSWLHHRSLQDFP 263
Query: 377 FRPGIAHAIVRQFFVPCLFTICFSASSSSDDH 282
RPGI I QF P T S +SSS H
Sbjct: 262 ERPGIPLLI*DQFRGPYFSTSLCSDASSSGLH 167
>gb|CV135175.1|CV135175 EST846384 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PICM856 5' end, mRNA sequence
Length = 926
Score = 106 bits (230), Expect = 2e-022
Identities = 39/94 (41%), Positives = 59/94 (62%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EED +L ++V+++G +NW I+ IPGR+ SC RW L P + P+S E
Sbjct: 153 KGPWSPEEDASLHKLVEKYGPRNWSQISRGIPGRSGKSCRLRWCNQLSPQVEHRPFSPHE 332
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ +I+A +GNKW + + PGRT++A+K HW
Sbjct: 333 DATIIQAHARHGNKWATIARLLPGRTDNAIKNHW 434
Score = 42.4 bits (88), Expect = 0.001
Identities = 32/92 (34%), Positives = 40/92 (43%)
Frame = -3 / -2
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLERHELA 378
FQ L A V PG+ I+ HL P A + ++SSC +G G H +
Sbjct: 436 FQWFLIALSVRPGRRRAIVAHLLPCRAWACMMVASSCGLKGRCSTWGLSWLHHRSLQDFP 257
Query: 377 FRPGIAHAIVRQFFVPCLFTICFSASSSSDDH 282
RPGI I QF P T S +SSS H
Sbjct: 256 ERPGIPLLI*DQFRGPYFSTSLCSDASSSGLH 161
>gb|CV136199.1|CV136199 EST847408 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIA840 5' end, mRNA sequence
Length = 874
Score = 106 bits (230), Expect = 2e-022
Identities = 39/94 (41%), Positives = 59/94 (62%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EED +L ++V+++G +NW I+ IPGR+ SC RW L P + P+S E
Sbjct: 153 KGPWSPEEDASLHKLVEKYGPRNWSQISRGIPGRSGKSCRLRWCNQLSPQVEHRPFSPHE 332
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ +I+A +GNKW + + PGRT++A+K HW
Sbjct: 333 DATIIQAHARHGNKWATIARLLPGRTDNAIKNHW 434
Score = 42.4 bits (88), Expect = 0.001
Identities = 32/92 (34%), Positives = 40/92 (43%)
Frame = -3 / -1
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLERHELA 378
FQ L A V PG+ I+ HL P A + ++SSC +G G H +
Sbjct: 436 FQWFLIALSVRPGRRRAIVAHLLPCRAWACMMVASSCGLKGRCSTWGLSWLHHRSLQDFP 257
Query: 377 FRPGIAHAIVRQFFVPCLFTICFSASSSSDDH 282
RPGI I QF P T S +SSS H
Sbjct: 256 ERPGIPLLI*DQFRGPYFSTSLCSDASSSGLH 161
>gb|DN447482.1|DN447482 EST943281 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIBT46 5' end, mRNA sequence
Length = 866
Score = 106 bits (230), Expect = 2e-022
Identities = 39/94 (41%), Positives = 59/94 (62%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EED +L ++V+++G +NW I+ IPGR+ SC RW L P + P+S E
Sbjct: 105 KGPWSPEEDASLHKLVEKYGPRNWSQISRGIPGRSGKSCRLRWCNQLSPQVEHRPFSPHE 284
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ +I+A +GNKW + + PGRT++A+K HW
Sbjct: 285 DATIIQAHARHGNKWATIARLLPGRTDNAIKNHW 386
Score = 42.4 bits (88), Expect = 0.001
Identities = 32/92 (34%), Positives = 40/92 (43%)
Frame = -3 / -2
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLERHELA 378
FQ L A V PG+ I+ HL P A + ++SSC +G G H +
Sbjct: 388 FQWFLIALSVRPGRRRAIVAHLLPCRAWACMMVASSCGLKGRCSTWGLSWLHHRSLQDFP 209
Query: 377 FRPGIAHAIVRQFFVPCLFTICFSASSSSDDH 282
RPGI I QF P T S +SSS H
Sbjct: 208 ERPGIPLLI*DQFRGPYFSTSLCSDASSSGLH 113
>gb|DN452317.1|DN452317 EST948116 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIFD73 5' end, mRNA sequence
Length = 879
Score = 106 bits (230), Expect = 2e-022
Identities = 39/94 (41%), Positives = 59/94 (62%)
Frame = +1 / +2
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EED +L ++V+++G +NW I+ IPGR+ SC RW L P + P+S E
Sbjct: 158 KGPWSPEEDASLHKLVEKYGPRNWSQISRGIPGRSGKSCRLRWCNQLSPQVEHRPFSPHE 337
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ +I+A +GNKW + + PGRT++A+K HW
Sbjct: 338 DATIIQAHARHGNKWATIARLLPGRTDNAIKNHW 439
Score = 42.4 bits (88), Expect = 0.001
Identities = 32/92 (34%), Positives = 40/92 (43%)
Frame = -3 / -1
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLERHELA 378
FQ L A V PG+ I+ HL P A + ++SSC +G G H +
Sbjct: 441 FQWFLIALSVRPGRRRAIVAHLLPCRAWACMMVASSCGLKGRCSTWGLSWLHHRSLQDFP 262
Query: 377 FRPGIAHAIVRQFFVPCLFTICFSASSSSDDH 282
RPGI I QF P T S +SSS H
Sbjct: 261 ERPGIPLLI*DQFRGPYFSTSLCSDASSSGLH 166
>gb|DN455288.1|DN455288 EST951087 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIGC65 5' end, mRNA sequence
Length = 932
Score = 106 bits (230), Expect = 2e-022
Identities = 39/94 (41%), Positives = 59/94 (62%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EED +L ++V+++G +NW I+ IPGR+ SC RW L P + P+S E
Sbjct: 159 KGPWSPEEDASLHKLVEKYGPRNWSQISRGIPGRSGKSCRLRWCNQLSPQVEHRPFSPHE 338
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ +I+A +GNKW + + PGRT++A+K HW
Sbjct: 339 DATIIQAHARHGNKWATIARLLPGRTDNAIKNHW 440
Score = 42.4 bits (88), Expect = 0.001
Identities = 32/92 (34%), Positives = 40/92 (43%)
Frame = -3 / -2
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLERHELA 378
FQ L A V PG+ I+ HL P A + ++SSC +G G H +
Sbjct: 442 FQWFLIALSVRPGRRRAIVAHLLPCRAWACMMVASSCGLKGRCSTWGLSWLHHRSLQDFP 263
Query: 377 FRPGIAHAIVRQFFVPCLFTICFSASSSSDDH 282
RPGI I QF P T S +SSS H
Sbjct: 262 ERPGIPLLI*DQFRGPYFSTSLCSDASSSGLH 167
>gb|DN456471.1|DN456471 EST952270 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIGP36 5' end, mRNA sequence
Length = 800
Score = 106 bits (230), Expect = 2e-022
Identities = 39/94 (41%), Positives = 59/94 (62%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EED +L ++V+++G +NW I+ IPGR+ SC RW L P + P+S E
Sbjct: 351 KGPWSPEEDASLHKLVEKYGPRNWSQISRGIPGRSGKSCRLRWCNQLSPQVEHRPFSPHE 530
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ +I+A +GNKW + + PGRT++A+K HW
Sbjct: 531 DATIIQAHARHGNKWATIARLLPGRTDNAIKNHW 632
Score = 42.4 bits (88), Expect = 0.001
Identities = 32/92 (34%), Positives = 40/92 (43%)
Frame = -3 / -2
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLERHELA 378
FQ L A V PG+ I+ HL P A + ++SSC +G G H +
Sbjct: 634 FQWFLIALSVRPGRRRAIVAHLLPCRAWACMMVASSCGLKGRCSTWGLSWLHHRSLQDFP 455
Query: 377 FRPGIAHAIVRQFFVPCLFTICFSASSSSDDH 282
RPGI I QF P T S +SSS H
Sbjct: 454 ERPGIPLLI*DQFRGPYFSTSLCSDASSSGLH 359
>gb|DN458982.1|DN458982 EST954781 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHH93 5' end, mRNA sequence
Length = 941
Score = 106 bits (230), Expect = 2e-022
Identities = 39/94 (41%), Positives = 59/94 (62%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EED +L ++V+++G +NW I+ IPGR+ SC RW L P + P+S E
Sbjct: 99 KGPWSPEEDASLHKLVEKYGPRNWSQISRGIPGRSGKSCRLRWCNQLSPQVEHRPFSPHE 278
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ +I+A +GNKW + + PGRT++A+K HW
Sbjct: 279 DATIIQAHARHGNKWATIARLLPGRTDNAIKNHW 380
Score = 42.4 bits (88), Expect = 0.001
Identities = 32/92 (34%), Positives = 40/92 (43%)
Frame = -3 / -2
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLERHELA 378
FQ L A V PG+ I+ HL P A + ++SSC +G G H +
Sbjct: 382 FQWFLIALSVRPGRRRAIVAHLLPCRAWACMMVASSCGLKGRCSTWGLSWLHHRSLQDFP 203
Query: 377 FRPGIAHAIVRQFFVPCLFTICFSASSSSDDH 282
RPGI I QF P T S +SSS H
Sbjct: 202 ERPGIPLLI*DQFRGPYFSTSLCSDASSSGLH 107
>gb|DN463709.1|DN463709 EST959508 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIJ226 5' end, mRNA sequence
Length = 914
Score = 106 bits (230), Expect = 2e-022
Identities = 39/94 (41%), Positives = 59/94 (62%)
Frame = +1 / +1
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EED +L ++V+++G +NW I+ IPGR+ SC RW L P + P+S E
Sbjct: 157 KGPWSPEEDASLHKLVEKYGPRNWSQISRGIPGRSGKSCRLRWCNQLSPQVEHRPFSPHE 336
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ +I+A +GNKW + + PGRT++A+K HW
Sbjct: 337 DATIIQAHARHGNKWATIARLLPGRTDNAIKNHW 438
Score = 42.4 bits (88), Expect = 0.001
Identities = 32/92 (34%), Positives = 40/92 (43%)
Frame = -3 / -1
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLERHELA 378
FQ L A V PG+ I+ HL P A + ++SSC +G G H +
Sbjct: 440 FQWFLIALSVRPGRRRAIVAHLLPCRAWACMMVASSCGLKGRCSTWGLSWLHHRSLQDFP 261
Query: 377 FRPGIAHAIVRQFFVPCLFTICFSASSSSDDH 282
RPGI I QF P T S +SSS H
Sbjct: 260 ERPGIPLLI*DQFRGPYFSTSLCSDASSSGLH 165
>gb|DN464734.1|DN464734 EST960533 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIJF92 5' end, mRNA sequence
Length = 939
Score = 106 bits (230), Expect = 2e-022
Identities = 39/94 (41%), Positives = 59/94 (62%)
Frame = +1 / +2
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EED +L ++V+++G +NW I+ IPGR+ SC RW L P + P+S E
Sbjct: 167 KGPWSPEEDASLHKLVEKYGPRNWSQISRGIPGRSGKSCRLRWCNQLSPQVEHRPFSPHE 346
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ +I+A +GNKW + + PGRT++A+K HW
Sbjct: 347 DATIIQAHARHGNKWATIARLLPGRTDNAIKNHW 448
Score = 42.4 bits (88), Expect = 0.001
Identities = 32/92 (34%), Positives = 40/92 (43%)
Frame = -3 / -1
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLERHELA 378
FQ L A V PG+ I+ HL P A + ++SSC +G G H +
Sbjct: 450 FQWFLIALSVRPGRRRAIVAHLLPCRAWACMMVASSCGLKGRCSTWGLSWLHHRSLQDFP 271
Query: 377 FRPGIAHAIVRQFFVPCLFTICFSASSSSDDH 282
RPGI I QF P T S +SSS H
Sbjct: 270 ERPGIPLLI*DQFRGPYFSTSLCSDASSSGLH 175
>gb|CF386912.1|CF386912 RTDR1_9_D07.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_9_D07_A015 5', mRNA
sequence
Length = 666
Score = 105 bits (229), Expect = 2e-022
Identities = 37/94 (39%), Positives = 60/94 (63%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EED +L+++V+++G +NW I+ IPGR+ SC RW L P + P++ E
Sbjct: 204 KGPWSPEEDASLQRLVQKYGPRNWTLISKGIPGRSGKSCRLRWCNQLSPQVEHRPFTPSE 383
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ +++A +GNKW + + PGRT++A+K HW
Sbjct: 384 DAAILQAHAQHGNKWATIARALPGRTDNAIKNHW 485
Score = 31.7 bits (64), Expect = 4.1
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +1 / +3
Query: 262 SKNKKHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLL 414
S +HR + ++A W TIA A+PGR N+ + W L
Sbjct: 345 SPQVEHRPFTPSEDAAILQAHAQHGNKWATIARALPGRTDNAIKNHWNSTL 497
>gb|CF669684.1|CF669684 RTCNT1_45_A07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_45_A07_A029 5', mRNA sequence
Length = 686
Score = 105 bits (229), Expect = 2e-022
Identities = 37/94 (39%), Positives = 60/94 (63%)
Frame = +1 / +1
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EED +L+++V+++G +NW I+ IPGR+ SC RW L P + P++ E
Sbjct: 202 KGPWSPEEDASLQRLVQKYGPRNWTLISKGIPGRSGKSCRLRWCNQLSPQVEHRPFTPSE 381
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ +++A +GNKW + + PGRT++A+K HW
Sbjct: 382 DAAILQAHAQHGNKWATIARALPGRTDNAIKNHW 483
Score = 31.7 bits (64), Expect = 4.1
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +1 / +1
Query: 262 SKNKKHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLL 414
S +HR + ++A W TIA A+PGR N+ + W L
Sbjct: 343 SPQVEHRPFTPSEDAAILQAHAQHGNKWATIARALPGRTDNAIKNHWNSTL 495
>gb|CO364221.1|CO364221 RTK1_14_A05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_14_A05_A029 5', mRNA sequence
Length = 801
Score = 105 bits (229), Expect = 2e-022
Identities = 37/94 (39%), Positives = 60/94 (63%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EED +L+++V+++G +NW I+ IPGR+ SC RW L P + P++ E
Sbjct: 216 KGPWSPEEDASLQRLVQKYGPRNWTLISKGIPGRSGKSCRLRWCNQLSPQVEHRPFTPSE 395
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ +++A +GNKW + + PGRT++A+K HW
Sbjct: 396 DAAILQAHAQHGNKWATIARALPGRTDNAIKNHW 497
Score = 31.7 bits (64), Expect = 4.1
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +1 / +3
Query: 262 SKNKKHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLL 414
S +HR + ++A W TIA A+PGR N+ + W L
Sbjct: 357 SPQVEHRPFTPSEDAAILQAHAQHGNKWATIARALPGRTDNAIKNHWNSTL 509
>gb|CV139163.1|CV139163 EST850372 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIBC55 5' end, mRNA sequence
Length = 794
Score = 105 bits (229), Expect = 2e-022
Identities = 37/94 (39%), Positives = 60/94 (63%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EED +L+++V+++G +NW I+ IPGR+ SC RW L P + P++ E
Sbjct: 234 KGPWSPEEDASLQRLVQKYGPRNWTLISKGIPGRSGKSCRLRWCNQLSPQVEHRPFTPSE 413
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ +++A +GNKW + + PGRT++A+K HW
Sbjct: 414 DAAILQAHAQHGNKWATIARALPGRTDNAIKNHW 515
Score = 31.7 bits (64), Expect = 4.1
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +1 / +3
Query: 262 SKNKKHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLL 414
S +HR + ++A W TIA A+PGR N+ + W L
Sbjct: 375 SPQVEHRPFTPSEDAAILQAHAQHGNKWATIARALPGRTDNAIKNHWNSTL 527
>gb|DR013838.1|DR013838 HEAT1_21_G09.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_21_G09_A029 5', mRNA sequence
Length = 813
Score = 105 bits (229), Expect = 2e-022
Identities = 37/94 (39%), Positives = 60/94 (63%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EED +L+++V+++G +NW I+ IPGR+ SC RW L P + P++ E
Sbjct: 216 KGPWSPEEDASLQRLVQKYGPRNWTLISKGIPGRSGKSCRLRWCNQLSPQVEHRPFTPSE 395
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ +++A +GNKW + + PGRT++A+K HW
Sbjct: 396 DAAILQAHAQHGNKWATIARALPGRTDNAIKNHW 497
Score = 31.7 bits (64), Expect = 4.1
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +1 / +3
Query: 262 SKNKKHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLL 414
S +HR + ++A W TIA A+PGR N+ + W L
Sbjct: 357 SPQVEHRPFTPSEDAAILQAHAQHGNKWATIARALPGRTDNAIKNHWNSTL 509
>gb|DR024798.1|DR024798 STRS1_67_B12.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_67_B12_A034 5', mRNA sequence
Length = 812
Score = 105 bits (229), Expect = 2e-022
Identities = 37/94 (39%), Positives = 60/94 (63%)
Frame = +1 / +2
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EED +L+++V+++G +NW I+ IPGR+ SC RW L P + P++ E
Sbjct: 215 KGPWSPEEDASLQRLVQKYGPRNWTLISKGIPGRSGKSCRLRWCNQLSPQVEHRPFTPSE 394
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ +++A +GNKW + + PGRT++A+K HW
Sbjct: 395 DAAILQAHAQHGNKWATIARALPGRTDNAIKNHW 496
Score = 31.7 bits (64), Expect = 4.1
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +1 / +2
Query: 262 SKNKKHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLL 414
S +HR + ++A W TIA A+PGR N+ + W L
Sbjct: 356 SPQVEHRPFTPSEDAAILQAHAQHGNKWATIARALPGRTDNAIKNHWNSTL 508
>gb|DR024941.1|DR024941 STRS1_68_B11.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_68_B11_A034 5', mRNA sequence
Length = 746
Score = 105 bits (229), Expect = 2e-022
Identities = 37/94 (39%), Positives = 60/94 (63%)
Frame = +1 / +1
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EED +L+++V+++G +NW I+ IPGR+ SC RW L P + P++ E
Sbjct: 211 KGPWSPEEDASLQRLVQKYGPRNWTLISKGIPGRSGKSCRLRWCNQLSPQVEHRPFTPSE 390
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ +++A +GNKW + + PGRT++A+K HW
Sbjct: 391 DAAILQAHAQHGNKWATIARALPGRTDNAIKNHW 492
Score = 31.7 bits (64), Expect = 4.1
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +1 / +1
Query: 262 SKNKKHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLL 414
S +HR + ++A W TIA A+PGR N+ + W L
Sbjct: 352 SPQVEHRPFTPSEDAAILQAHAQHGNKWATIARALPGRTDNAIKNHWNSTL 504
>gb|DR050127.1|DR050127 RTBOR1_21_A09.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_21_A09_A029 5', mRNA sequence
Length = 867
Score = 105 bits (229), Expect = 2e-022
Identities = 37/94 (39%), Positives = 60/94 (63%)
Frame = +1 / +2
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EED +L+++V+++G +NW I+ IPGR+ SC RW L P + P++ E
Sbjct: 239 KGPWSPEEDASLQRLVQKYGPRNWTLISKGIPGRSGKSCRLRWCNQLSPQVEHRPFTPSE 418
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ +++A +GNKW + + PGRT++A+K HW
Sbjct: 419 DAAILQAHAQHGNKWATIARALPGRTDNAIKNHW 520
Score = 31.7 bits (64), Expect = 4.1
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +1 / +2
Query: 262 SKNKKHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLL 414
S +HR + ++A W TIA A+PGR N+ + W L
Sbjct: 380 SPQVEHRPFTPSEDAAILQAHAQHGNKWATIARALPGRTDNAIKNHWNSTL 532
>gb|DR089099.1|DR089099 RTAL1_6_B11.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_6_B11_A029 5', mRNA sequence
Length = 809
Score = 105 bits (229), Expect = 2e-022
Identities = 37/94 (39%), Positives = 60/94 (63%)
Frame = +1 / +2
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EED +L+++V+++G +NW I+ IPGR+ SC RW L P + P++ E
Sbjct: 89 KGPWSPEEDASLQRLVQKYGPRNWTLISKGIPGRSGKSCRLRWCNQLSPQVEHRPFTPSE 268
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ +++A +GNKW + + PGRT++A+K HW
Sbjct: 269 DAAILQAHAQHGNKWATIARALPGRTDNAIKNHW 370
Score = 31.7 bits (64), Expect = 4.1
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +1 / +2
Query: 262 SKNKKHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLL 414
S +HR + ++A W TIA A+PGR N+ + W L
Sbjct: 230 SPQVEHRPFTPSEDAAILQAHAQHGNKWATIARALPGRTDNAIKNHWNSTL 382
>gb|DT626587.1|DT626587 EST1158511 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAC43 5' end, mRNA sequence
Length = 738
Score = 105 bits (229), Expect = 2e-022
Identities = 37/94 (39%), Positives = 60/94 (63%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EED +L+++V+++G +NW I+ IPGR+ SC RW L P + P++ E
Sbjct: 234 KGPWSPEEDASLQRLVQKYGPRNWTLISKGIPGRSGKSCRLRWCNQLSPQVEHRPFTPSE 413
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ +++A +GNKW + + PGRT++A+K HW
Sbjct: 414 DAAILQAHAQHGNKWATIARALPGRTDNAIKNHW 515
Score = 31.7 bits (64), Expect = 4.1
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +1 / +3
Query: 262 SKNKKHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLL 414
S +HR + ++A W TIA A+PGR N+ + W L
Sbjct: 375 SPQVEHRPFTPSEDAAILQAHAQHGNKWATIARALPGRTDNAIKNHWNSTL 527
>gb|DT626735.1|DT626735 EST1159811 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAQ67 5' end, mRNA sequence
Length = 900
Score = 105 bits (229), Expect = 2e-022
Identities = 39/94 (41%), Positives = 59/94 (62%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EED +L ++V+++G +NW I+ IPGR+ SC RW L P + P+S E
Sbjct: 99 KGPWSPEEDASLHKLVEKYGPRNWSQISRRIPGRSGKSCRLRWCNQLSPQVEHRPFSPHE 278
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ +I+A +GNKW + + PGRT++A+K HW
Sbjct: 279 DATIIQAHARHGNKWATIARLLPGRTDNAIKNHW 380
Score = 42.4 bits (88), Expect = 0.001
Identities = 32/92 (34%), Positives = 40/92 (43%)
Frame = -3 / -3
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLERHELA 378
FQ L A V PG+ I+ HL P A + ++SSC +G G H +
Sbjct: 382 FQWFLIALSVRPGRRRAIVAHLLPCRAWACMMVASSCGLKGRCSTWGLSWLHHRSLQDFP 203
Query: 377 FRPGIAHAIVRQFFVPCLFTICFSASSSSDDH 282
RPGI I QF P T S +SSS H
Sbjct: 202 ERPGILLLI*DQFRGPYFSTSLCSDASSSGLH 107
>gb|DR167601.1|DR167601 RTPHOS1_19_G10.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_19_G10_A029 5', mRNA sequence
Length = 776
Score = 101 bits (220), Expect = 4e-021
Identities = 36/80 (45%), Positives = 56/80 (70%)
Frame = +1 / +3
Query: 316 MVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNK 495
+V ++G +NW IA + GR+ SC RW LDP IN+ P+S+++E +L+ A ++YGNK
Sbjct: 3 LVSQYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRPFSEEDEEKLLAAHRLYGNK 182
Query: 496 WCKMVKHFPGRTNDALKEHW 555
W + + FPGRT++A+K HW
Sbjct: 183 WAMIARLFPGRTDNAVKNHW 242
Score = 31.2 bits (63), Expect = 3.9
Identities = 25/72 (34%), Positives = 29/72 (40%)
Frame = -3 / -2
Query: 554 QCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLERHELAF 375
Q +A VLPG I+ HLFP A + SSS +G I GS H
Sbjct: 241 QWFFTALSVLPGNKRAIMAHLFPYKRWAASSFSSSSSLKGLRLILGSN*LNHRSLQLFPD 62
Query: 374 RPGIAHAIVRQF 339
P AI QF
Sbjct: 61 LPSSFSAIRFQF 26
>gb|BQ701199.1|BQ701199 NXSI_023_G01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_023_G01 5' similar to Arabidopsis thaliana
sequence At5g67300 myb-related protein, 33.3K
(pir||S71284) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 497
Score = 97.6 bits (211), Expect = 6e-020
Identities = 34/88 (38%), Positives = 56/88 (63%)
Frame = +1 / +1
Query: 292 EEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQEELRLIR 471
EED +L+++V+++G +NW I+ IPGR+ SC RW L P + P++ E+ +++
Sbjct: 4 EEDASLQRLVQKYGPRNWTLISKGIPGRSGKSCRLRWCNQLSPQVEHRPFTPSEDAAILQ 183
Query: 472 AQQVYGNKWCKMVKHFPGRTNDALKEHW 555
A +GNKW + + PGRT++A K HW
Sbjct: 184 AHAQHGNKWATIARALPGRTDNAXKNHW 267
Score = 31.2 bits (63), Expect = 5.6
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +1 / +1
Query: 262 SKNKKHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLL 414
S +HR + ++A W TIA A+PGR N+ + W L
Sbjct: 127 SPQVEHRPFTPSEDAAILQAHAQHGNKWATIARALPGRTDNAXKNHWNSTL 279
>gb|BF610487.1|BF610487 NXSI_059_A09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_059_A09 5' similar to Arabidopsis thaliana
sequence At5g67300 myb-related protein, 33.3K
(pir||S71284) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 304
Score = 94.9 bits (205), Expect = 4e-019
Identities = 33/88 (37%), Positives = 55/88 (62%)
Frame = +1 / +1
Query: 292 EEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQEELRLIR 471
EED +L+++V+++G +NW I+ IPGR+ SC RW L P + P++ E+ +++
Sbjct: 4 EEDASLQRLVQKYGPRNWTLISKGIPGRSGKSCRLRWCNQLSPQVEHRPFTPSEDAAILQ 183
Query: 472 AQQVYGNKWCKMVKHFPGRTNDALKEHW 555
A +GNKW + + PGRT++A HW
Sbjct: 184 AHAQHGNKWATIARALPGRTDNAXXNHW 267
Score = 31.2 bits (63), Expect = 5.6
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1 / +1
Query: 262 SKNKKHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRW 402
S +HR + ++A W TIA A+PGR N+ + W
Sbjct: 127 SPQVEHRPFTPSEDAAILQAHAQHGNKWATIARALPGRTDNAXXNHW 267
>gb|DR098178.1|DR098178 STRR1_39_D04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_39_D04_A033 5', mRNA sequence
Length = 690
Score = 89.5 bits (193), Expect = 2e-017
Identities = 31/81 (38%), Positives = 51/81 (62%)
Frame = +1 / +2
Query: 313 QMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGN 492
++V++ G +NW I+ IPGR+ SC RW L P + P+S +E+ ++ A ++GN
Sbjct: 2 KLVEKLGPRNWSLISKGIPGRSGKSCRLRWCNQLSPQVQHRPFSPEEDRMIMEAHSMHGN 181
Query: 493 KWCKMVKHFPGRTNDALKEHW 555
KW + + PGRT++A+K HW
Sbjct: 182 KWATIARILPGRTDNAIKNHW 244
Score = 35.7 bits (73), Expect = 0.16
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = -3 / -1
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLERHELA 378
FQ L A V PG+ ++ HL P A + + SS ++G G H RH+
Sbjct: 246 FQWFLIALSVRPGRIRAMVAHLLPCMEWASMIILSSSGEKGRCCTCGLS*LHHRRRHDFP 67
Query: 377 FRPGI 363
RPG+
Sbjct: 66 DRPGM 52
Score = 31.2 bits (63), Expect = 5.6
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +1 / +2
Query: 262 SKNKKHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLL 414
S +HR S E++ + W TIA +PGR N+ + W L
Sbjct: 104 SPQVQHRPFSPEEDRMIMEAHSMHGNKWATIARILPGRTDNAIKNHWNSTL 256
>gb|CF397637.1|CF397637 RTDS3_4_A07.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_4_A07_A022 5', mRNA sequence
Length = 714
Score = 66.2 bits (141), Expect(2) = 2e-016
Identities = 25/61 (40%), Positives = 33/61 (54%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + +S E+L +IR + GNKW + H PGRT+ +K H
Sbjct: 157 RCGKSCRLRWANYLRPDIKRGTFSVHEDLNIIRLHGILGNKWSAIASHLPGRTDSEIKNH 336
Query: 553 W 555
W
Sbjct: 337 W 339
Score = 38.4 bits (79), Expect(2) = 2e-016
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1 / +1
Query: 283 WSSEEDEALKQMVKRHGTKNWRT 351
W++EED+ L V+RHG NWRT
Sbjct: 64 WTTEEDQKLSYHVQRHGLGNWRT 132
Score = 31.2 bits (63), Expect = 3.9
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -3 / -2
Query: 530 VLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHL 396
VLPG+C I HLFP R+ L SS ++ ++G + HL
Sbjct: 314 VLPGRCEAIADHLFPRIP*RRMILRSS*TEKVPRLMSGRK*LAHL 180
>gb|AL750878.1|AL750878 AL750878 RS Pinus pinaster cDNA clone RS01D05 similar to
MYB-RELATED, mRNA sequence
Length = 461
Score = 81.0 bits (174), Expect = 6e-015
Identities = 29/75 (38%), Positives = 47/75 (62%)
Frame = +1 / +2
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EED +L+++V+++G +NW I+ IPGR+ SC RW L P + P++ E
Sbjct: 227 KGPWSPEEDASLQRLVQKYGPRNWTLISKGIPGRSGKSCRLRWCNQLSPQVEHRPFTPSE 406
Query: 454 ELRLIRAQQVYGNKW 498
+ +++A +GNKW
Sbjct: 407 DAAILQAHAQHGNKW 451
>gb|DT637439.1|DT637439 EST1152370 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMH369 3' end, mRNA sequence
Length = 861
Score = 58.6 bits (124), Expect(2) = 1e-013
Identities = 24/62 (38%), Positives = 32/62 (51%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R+ SC RWK L P I K S+ E+ +I Q YGN+W K+ PG T L +
Sbjct: 245 RDPKSCAERWKNYLKPGIKKGSLSEDEQRLVISLQAKYGNRWKKIAAQVPGTTAKRLSKW 424
Query: 553 WK 558
W+
Sbjct: 425 WE 430
Score = 37.1 bits (76), Expect(2) = 1e-013
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1 / +2
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNWRTIA 357
++ RW SEED L VKR+G + W I+
Sbjct: 134 ERQRWRSEEDSLLLSYVKRYGPREWNLIS 220
>gb|DR692411.1|DR692411 EST1082499 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADL83 3' end, mRNA sequence
Length = 777
Score = 58.6 bits (124), Expect(2) = 1e-013
Identities = 24/62 (38%), Positives = 32/62 (51%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R+ SC RWK L P I K S+ E+ +I Q YGN+W K+ PG T L +
Sbjct: 237 RDPKSCAERWKNYLKPGIKKGSLSEDEQRLVISLQAKYGNRWKKIAAQVPGTTAKRLSKW 416
Query: 553 WK 558
W+
Sbjct: 417 WE 422
Score = 37.1 bits (76), Expect(2) = 1e-013
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1 / +3
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNWRTIA 357
++ RW SEED L VKR+G + W I+
Sbjct: 126 ERQRWRSEEDSLLLSYVKRYGPREWNLIS 212
>gb|CO366297.1|CO366297 RTK1_27_B09.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_27_B09_A029 3', mRNA sequence
Length = 904
Score = 59.5 bits (126), Expect(2) = 1e-013
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +1 / -1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + +S +EE +I Q+ GN+W + H PGRT++ +K
Sbjct: 778 RCGKSCRLRWTNYLRPDIKRGNFSLKEEQTIIHLHQILGNRWSAIASHLPGRTDNEIKNV 599
Query: 553 W 555
W
Sbjct: 598 W 596
Score = 35.7 bits (73), Expect(2) = 1e-013
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1 / -1
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNWRTI 354
KK W+ EED+ L + +HG NWR +
Sbjct: 883 KKGPWTPEEDQILISYINKHGHGNWRAL 800
Score = 33.0 bits (67), Expect = 1.1
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -3 / +3
Query: 530 VLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLER 390
VLPG+C I H FP C I + SS + F++G R + H R
Sbjct: 621 VLPGRCEAIADHRFPRI*CR*IIVCSSLRLKFPRFMSGLR*FVHRRR 761
>gb|BG319341.1|BG319341 NXPV_026_G12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_026_G12 5' similar to Arabidopsis
thaliana sequence At2g37630 putative MYB family
transcription factor see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 378
Score = 60.4 bits (128), Expect(2) = 2e-013
Identities = 25/62 (40%), Positives = 33/62 (53%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R+A SCL RWK L P I K +++E+ +I Q YGNKW K+ PG T
Sbjct: 172 RDAKSCLERWKNYLKPGIKKGSLTEEEQSLVISLQAKYGNKWKKIAAEVPGXTAKRXXXW 351
Query: 553 WK 558
W+
Sbjct: 352 WE 357
Score = 33.9 bits (69), Expect(2) = 2e-013
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1 / +1
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNWRTIA 357
++ RW EED L+ VK++G + W ++
Sbjct: 61 ERQRWQPEEDALLRAYVKQYGPREWNLVS 147
>gb|DR683147.1|DR683147 EST1073223 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAE70 3' end, mRNA sequence
Length = 768
Score = 59.0 bits (125), Expect(2) = 3e-013
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + K ++ +EE ++ GNKW +M H PGRT++ +K +
Sbjct: 351 RCGKSCRLRWANHLRPNLKKGAFTAEEERIILELHAKLGNKWARMAAHLPGRTDNEIKNY 530
Query: 553 W 555
W
Sbjct: 531 W 533
Score = 35.3 bits (72), Expect(2) = 3e-013
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1 / +3
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNWRTI 354
KK W+S ED L + V++HG NW +
Sbjct: 246 KKGPWTSAEDAILVEYVRKHGEGNWNAV 329
>gb|DT631233.1|DT631233 EST1146164 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF647 3' end, mRNA sequence
Length = 762
Score = 59.0 bits (125), Expect(2) = 3e-013
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + K ++ +EE ++ GNKW +M H PGRT++ +K +
Sbjct: 289 RCGKSCRLRWANHLRPNLKKGAFTAEEERIILELHAKLGNKWARMAAHLPGRTDNEIKNY 468
Query: 553 W 555
W
Sbjct: 469 W 471
Score = 35.3 bits (72), Expect(2) = 3e-013
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1 / +1
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNWRTI 354
KK W+S ED L + V++HG NW +
Sbjct: 184 KKGPWTSAEDAILVEYVRKHGEGNWNAV 267
>gb|DT627526.1|DT627526 EST1160602 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAZ54 5' end, mRNA sequence
Length = 635
Score = 74.7 bits (160), Expect = 5e-013
Identities = 27/64 (42%), Positives = 39/64 (60%)
Frame = +1 / +3
Query: 364 IPGRNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDAL 543
IPGR+ SC RW L P + P+S E+ +I+A +GNKW + + PGRT++A+
Sbjct: 6 IPGRSGKSCRLRWCNQLSPQVEHRPFSPHEDATIIQAHARHGNKWATIARLLPGRTDNAI 185
Query: 544 KEHW 555
K HW
Sbjct: 186 KNHW 197
Score = 33.9 bits (69), Expect = 0.58
Identities = 22/65 (33%), Positives = 29/65 (44%)
Frame = -3 / -2
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLERHELA 378
FQ L A V PG+ I+ HL P A + ++SSC +G G H +
Sbjct: 199 FQWFLIALSVRPGRRRAIVAHLLPCRAWACMMVASSCGLKGRCSTWGLSWLHHRSLQDFP 20
Query: 377 FRPGI 363
RPGI
Sbjct: 19 ERPGI 5
>gb|CF672556.1|CF672556 RTCNT1_64_A03.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_64_A03_A029 5', mRNA sequence
Length = 253
Score = 74.3 bits (159), Expect = 6e-013
Identities = 26/68 (38%), Positives = 41/68 (60%)
Frame = +1 / +3
Query: 352 IACAIPGRNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRT 531
I+ IPGR+ SC RW L P + P++ E+ +++A +GNKW + + PGRT
Sbjct: 6 ISKGIPGRSGKSCRLRWCNQLSPQVEHRPFTPSEDAAILQAHAQHGNKWATIARALPGRT 185
Query: 532 NDALKEHW 555
++A+K HW
Sbjct: 186 DNAIKNHW 209
Score = 31.7 bits (64), Expect = 4.1
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +1 / +3
Query: 262 SKNKKHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLL 414
S +HR + ++A W TIA A+PGR N+ + W L
Sbjct: 69 SPQVEHRPFTPSEDAAILQAHAQHGNKWATIARALPGRTDNAIKNHWNSTL 221
>gb|CO162972.1|CO162972 FLD1_38_D09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_38_D09_A029 5', mRNA sequence
Length = 842
Score = 60.4 bits (128), Expect(2) = 7e-013
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + +S E++ +I + GN+W + H PGRT++ +K H
Sbjct: 157 RCGKSCRLRWTNYLRPDIKRGNFSIHEDIVIIHLHAILGNRWSAIASHLPGRTDNEIKNH 336
Query: 553 W 555
W
Sbjct: 337 W 339
Score = 32.6 bits (66), Expect(2) = 7e-013
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1 / +1
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNWRTI 354
K+ W++EED+ L ++ HG WR++
Sbjct: 52 KRGPWTAEEDQKLINYLQHHGRTKWRSL 135
>gb|DR167765.1|DR167765 RTPHOS1_20_H05.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_20_H05_A029 5', mRNA sequence
Length = 806
Score = 59.5 bits (126), Expect(2) = 7e-013
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + +S +EE +I Q+ GN+W + H PGRT++ +K
Sbjct: 104 RCGKSCRLRWTNYLRPDIKRGNFSLKEEQTIIHLHQILGNRWSAIASHLPGRTDNEIKNV 283
Query: 553 W 555
W
Sbjct: 284 W 286
Score = 33.5 bits (68), Expect(2) = 7e-013
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1 / +2
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ EED+ L + +HG NWR +
Sbjct: 2 KGPWTPEEDQILISYINKHGHGNWRAL 82
Score = 33.0 bits (67), Expect = 1.1
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -3 / -3
Query: 530 VLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLER 390
VLPG+C I H FP C I + SS + F++G R + H R
Sbjct: 261 VLPGRCEAIADHRFPRI*CR*IIVCSSLRLKFPRFMSGLR*FVHRRR 121
>gb|CO366361.1|CO366361 RTK1_27_A03.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_27_A03_A029 5', mRNA sequence
Length = 842
Score = 73.4 bits (157), Expect = 1e-012
Identities = 25/64 (39%), Positives = 39/64 (60%)
Frame = +1 / +1
Query: 364 IPGRNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDAL 543
IPGR+ SC RW L P + P++ E+ +++A +GNKW + + PGRT++A+
Sbjct: 4 IPGRSGKSCRLRWCNQLSPQVEHRPFTPSEDAAILQAHAQHGNKWATIARALPGRTDNAI 183
Query: 544 KEHW 555
K HW
Sbjct: 184 KNHW 195
Score = 31.7 bits (64), Expect = 4.1
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +1 / +1
Query: 262 SKNKKHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLL 414
S +HR + ++A W TIA A+PGR N+ + W L
Sbjct: 55 SPQVEHRPFTPSEDAAILQAHAQHGNKWATIARALPGRTDNAIKNHWNSTL 207
>gb|DR052339.1|DR052339 RTCA1_4_B02.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_4_B02_A029 3', mRNA sequence
Length = 698
Score = 55.9 bits (118), Expect(2) = 2e-012
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = +1 / -1
Query: 343 WRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHF 519
W +A + RN+ C RW+ L+PAI++ W E+ +L+ A + G W +VK +
Sbjct: 392 WSVVASLVETRNSGQCAKRWQDTLNPAIDRSAWGSDEDAKLLDAVEKMGTCWTTIVKSY 216
Score = 54.1 bits (114), Expect = 7e-007
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +1 / -1
Query: 343 WRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFP 522
W +IA +PGR C RW + ++K WS +E+ +L+ A + +G KW +
Sbjct: 545 WHSIARHVPGRTNKDCRKRWCATMASIVSKGGWSSEEDRKLLDAVEKHGTKWSVVASLVE 366
Query: 523 GRTNDALKEHWK 558
R + + W+
Sbjct: 365 TRNSGQCAKRWQ 330
Score = 35.7 bits (73), Expect(2) = 2e-012
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1 / -1
Query: 199 SEEIEGPPHKKIVQNFTESSSSKNKKHRWSSEEDEALKQMVKRHGTK 339
+ + G +K + + + +S K WSSEED L V++HGTK
Sbjct: 533 ARHVPGRTNKDCRKRWCATMASIVSKGGWSSEEDRKLLDAVEKHGTK 393
Score = 31.2 bits (63), Expect = 5.6
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1 / -1
Query: 283 WSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYL 411
W S+ED L V++ GT + PGR A + +R+ +L
Sbjct: 296 WGSDEDAKLLDAVEKMGTCWTTIVKSYFPGRTALAAKNRYSHL 168
Score = 31.2 bits (63), Expect = 5.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1 / -1
Query: 490 NKWCKMVKHFPGRTNDALKEHW 555
+KW + +H PGRTN ++ W
Sbjct: 551 SKWHSIARHVPGRTNKDCRKRW 486
>gb|CX647457.1|CX647457 COLD1_16_B04.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_16_B04_A029 5', mRNA sequence
Length = 748
Score = 56.8 bits (120), Expect(2) = 3e-012
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + +S QEE +I+ + GN+W + H P RT++ +K +
Sbjct: 100 RCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSTIATHLPKRTDNEIKNY 279
Query: 553 W 555
W
Sbjct: 280 W 282
Score = 34.4 bits (70), Expect = 0.42
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = -3 / -3
Query: 530 VLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLER 390
VL G+ + ++ HLFP C+ I + SSC L ++G R + H +R
Sbjct: 257 VLFGR*VAMVDHLFPKRACSWIMVCSSCRLNFPLLMSGLR*FVHRKR 117
Score = 33.9 bits (69), Expect(2) = 3e-012
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1 / +1
Query: 283 WSSEEDEALKQMVKRHGTKNWRTI 354
W+ EED+ L +++HG NWR++
Sbjct: 7 WTPEEDKKLLAYIEQHGLGNWRSV 78
>gb|CO158547.1|CO158547 FLD1_7_D03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_7_D03_A029 5', mRNA sequence
Length = 693
Score = 56.3 bits (119), Expect(2) = 4e-012
Identities = 21/61 (34%), Positives = 35/61 (57%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + +S +EE ++I+ ++ GN+W + + PGRT++ +K
Sbjct: 183 RCGKSCRLRWTNYLRPDIKRGNFSPEEEDQIIKLHELIGNRWSTIASYLPGRTDNEIKNV 362
Query: 553 W 555
W
Sbjct: 363 W 365
Score = 36.6 bits (75), Expect = 0.086
Identities = 22/56 (39%), Positives = 29/56 (51%)
Frame = -3 / -3
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLER 390
F L + VLPGK I+ HLFP + C I SSS + L ++G R + H R
Sbjct: 367 FHTFLISLSVLPGKYEAIVDHLFPMSSCNLII*SSSSGLKFPLLMSGLR*FVHRRR 200
Score = 33.9 bits (69), Expect(2) = 4e-012
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1 / +3
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNWRTI 354
KK W+ +ED+ L + +HG NWR +
Sbjct: 78 KKGAWTLDEDKILVDYITKHGHGNWRAL 161
>gb|CF671993.1|CF671993 RTCNT1_60_D02.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_60_D02_A029 5', mRNA sequence
Length = 557
Score = 56.8 bits (120), Expect(2) = 4e-012
Identities = 21/61 (34%), Positives = 35/61 (57%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + +S +EE ++I+ ++ GN+W + + PGRT++ +K
Sbjct: 161 RCGKSCRLRWTNYLKPDIKRGNFSPEEEDQIIKLHELIGNRWSTIASYLPGRTDNEIKNV 340
Query: 553 W 555
W
Sbjct: 341 W 343
Score = 36.6 bits (75), Expect = 0.086
Identities = 22/56 (39%), Positives = 29/56 (51%)
Frame = -3 / -3
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLER 390
F L + VLPGK I+ HLFP + C I SSS + L ++G R + H R
Sbjct: 345 FHTFLISLSVLPGKYEAIVDHLFPMSSCNLII*SSSSGLKFPLLMSGFR*FVHRRR 178
Score = 33.5 bits (68), Expect(2) = 4e-012
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1 / +2
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNWRTI 354
KK W+ +ED+ L + +HG NWR +
Sbjct: 56 KKGPWTLDEDKILVDYITKHGHGNWRAL 139
>gb|CO198121.1|CO198121 GEO1_11_A02.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_11_A02_A029 5', mRNA sequence
Length = 667
Score = 54.1 bits (114), Expect(2) = 8e-012
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S++E+ +I+ + GNKW + PGRT++ +K +
Sbjct: 114 RCGKSCRLRWINYLRPDLKRGSFSEEEDDLIIKLHSLLGNKWSLIAGRLPGRTDNEIKNY 293
Query: 553 W 555
W
Sbjct: 294 W 296
Score = 35.3 bits (72), Expect(2) = 8e-012
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1 / +3
Query: 268 NKKHRWSSEEDEALKQMVKRHGTKNWRTI 354
N K W+ EEDE L ++ HG +WR++
Sbjct: 6 NNKGAWTKEEDERLIAHIEAHGEGSWRSL 92
>gb|BX679906.1|BX679906 BX679906 RS Pinus pinaster cDNA clone RS36A06, mRNA sequence
Length = 448
Score = 54.1 bits (114), Expect(2) = 8e-012
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S++E+ +I+ + GNKW + PGRT++ +K +
Sbjct: 178 RCGKSCRLRWINYLRPDLKRGSFSEEEDDLIIKLHSLLGNKWSLIAGRLPGRTDNEIKNY 357
Query: 553 W 555
W
Sbjct: 358 W 360
Score = 35.3 bits (72), Expect(2) = 8e-012
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1 / +1
Query: 268 NKKHRWSSEEDEALKQMVKRHGTKNWRTI 354
N K W+ EEDE L ++ HG +WR++
Sbjct: 70 NNKGAWTKEEDERLIAHIEAHGEGSWRSL 156
>gb|DR015700.1|DR015700 STRS1_5_D02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_D02_A034 3', mRNA sequence
Length = 909
Score = 54.6 bits (115), Expect(2) = 1e-011
Identities = 21/61 (34%), Positives = 34/61 (55%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R+ SC RW L P I + S +E+ L+R ++ GN+W + PGRT++ +K +
Sbjct: 175 RSGKSCRLRWLNYLRPDIKRGNISPEEDELLVRLHRLLGNRWTLIAGRLPGRTDNEVKNY 354
Query: 553 W 555
W
Sbjct: 355 W 357
Score = 34.4 bits (70), Expect(2) = 1e-011
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1 / +1
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNWR 348
K+ W++ ED+ L + +K HGT WR
Sbjct: 70 KRGAWTASEDKILIEYIKTHGTGQWR 147
>gb|DR015783.1|DR015783 STRS1_5_D02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_D02_A034 5', mRNA sequence
Length = 547
Score = 54.6 bits (115), Expect(2) = 1e-011
Identities = 21/61 (34%), Positives = 34/61 (55%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R+ SC RW L P I + S +E+ L+R ++ GN+W + PGRT++ +K +
Sbjct: 323 RSGKSCRLRWLNYLRPDIKRGNISPEEDELLVRLHRLLGNRWTLIAGRLPGRTDNEVKNY 502
Query: 553 W 555
W
Sbjct: 503 W 505
Score = 34.4 bits (70), Expect(2) = 1e-011
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1 / +2
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNWR 348
K+ W++ ED+ L + +K HGT WR
Sbjct: 218 KRGAWTASEDKILIEYIKTHGTGQWR 295
>gb|CV035967.1|CV035967 RTNACL1_43_E10.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_43_E10_A029 5', mRNA sequence
Length = 862
Score = 52.3 bits (110), Expect(2) = 1e-011
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +EE +I +GN+W ++ + PGRT++ +K +
Sbjct: 171 RTGRSCRLRWFNSLRPGLKHGKITPEEERLIIGLHGRWGNRWSRIARRLPGRTDNEIKNY 350
Query: 553 WK 558
W+
Sbjct: 351 WR 356
Score = 36.2 bits (74), Expect(2) = 1e-011
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1 / +3
Query: 220 PHKKIVQNFTESSSSKNKKHRWSSEEDEALKQMVKRHGTKNWRTIACA 363
P +V F + ++ +K W+ EED L + ++ HG W +A A
Sbjct: 15 PTWSVVSGFQDEDEAETRKGPWAVEEDLHLTRYIRLHGEGRWSFLAKA 158
>gb|AW011253.1|AW011253 ST18F02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST18F02, mRNA sequence
Length = 578
Score = 52.8 bits (111), Expect(2) = 1e-011
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S +E+ +I+ + GNKW + PGRT++ +K +
Sbjct: 158 RCGKSCRLRWINYLRPDLKRGNFSPEEDEIIIKLHSMLGNKWSLIASKLPGRTDNEIKNY 337
Query: 553 W 555
W
Sbjct: 338 W 340
Score = 35.7 bits (73), Expect(2) = 1e-011
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1 / +2
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K WS +EDEAL ++ HG +WR++
Sbjct: 56 KGAWSKDEDEALVAYIQAHGEGSWRSL 136
>gb|DR694473.1|DR694473 EST1084565 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEC94 3' end, mRNA sequence
Length = 822
Score = 56.8 bits (120), Expect(2) = 2e-011
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + S+ EE +I GN+W K+ H PGRT++ +K +
Sbjct: 222 RCGKSCRLRWTNYLRPDLKRGLLSESEEQLIIDLHSQLGNRWSKIAAHLPGRTDNEIKNY 401
Query: 553 W 555
W
Sbjct: 402 W 404
Score = 31.2 bits (63), Expect(2) = 2e-011
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1 / +3
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNWRTI 354
KK W++EED+ L + HG WR +
Sbjct: 117 KKGPWTAEEDQKLISFILNHGHCCWRAV 200
>gb|DT638742.1|DT638742 EST1153673 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHI92 3' end, mRNA sequence
Length = 822
Score = 56.8 bits (120), Expect(2) = 2e-011
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + S+ EE +I GN+W K+ H PGRT++ +K +
Sbjct: 230 RCGKSCRLRWTNYLRPDLKRGLLSESEEQLIIDLHSQLGNRWSKIAAHLPGRTDNEIKNY 409
Query: 553 W 555
W
Sbjct: 410 W 412
Score = 31.2 bits (63), Expect(2) = 2e-011
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1 / +2
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNWRTI 354
KK W++EED+ L + HG WR +
Sbjct: 125 KKGPWTAEEDQKLISFILNHGHCCWRAV 208
>gb|DR685654.1|DR685654 EST1075731 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAB633 3' end, mRNA sequence
Length = 786
Score = 56.8 bits (120), Expect(2) = 2e-011
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + S+ EE +I GN+W K+ H PGRT++ +K +
Sbjct: 169 RCGKSCRLRWTNYLRPDLKRGLLSESEEQLIIDLHSQLGNRWSKIAAHLPGRTDNEIKNY 348
Query: 553 W 555
W
Sbjct: 349 W 351
Score = 31.2 bits (63), Expect(2) = 2e-011
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1 / +1
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNWRTI 354
KK W++EED+ L + HG WR +
Sbjct: 64 KKGPWTAEEDQKLISFILNHGHCCWRAV 147
>gb|CF477905.1|CF477905 RTWW3_13_C03.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_13_C03_A022 5', mRNA sequence
Length = 707
Score = 61.7 bits (131), Expect(2) = 2e-011
Identities = 25/62 (40%), Positives = 34/62 (54%)
Frame = +1 / +3
Query: 370 GRNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKE 549
GR SC RW L P I + SQ EE +IR ++ GN+W + PGRT++ +K
Sbjct: 225 GRCGKSCRLRWLNYLRPTIKRGNISQDEEDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKN 404
Query: 550 HW 555
HW
Sbjct: 405 HW 410
Score = 32.1 bits (65), Expect = 2.0
Identities = 20/54 (37%), Positives = 22/54 (40%)
Frame = -3 / -2
Query: 530 VLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLERHELAFRP 369
V PG I HL P + C RI SSS + FI G R H RP
Sbjct: 385 VRPGNLPAINDHLLPRSRCRRIMRSSSSWEMFPRFIVGLR*LSHRSLQLFPHRP 224
Score = 26.3 bits (52), Expect(2) = 2e-011
Identities = 7/24 (29%), Positives = 15/24 (62%)
Frame = +1 / +3
Query: 283 WSSEEDEALKQMVKRHGTKNWRTI 354
W+++ED L + ++ HG +W +
Sbjct: 135 WTAKEDNLLTRYIEWHGEGDWSNL 206
>gb|DR111182.1|DR111182 RTS1_16_A02.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_16_A02_A029 3', mRNA sequence
Length = 685
Score = 60.4 bits (128), Expect(2) = 2e-011
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = +1 / -2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + + QEE +I+ + +GN+W + ++ PGRT++ +K H
Sbjct: 264 RTGKSCRLRWINYLRPDLKRSKITPQEERLIIKLHRRWGNRWSSIAQNLPGRTDNEIKNH 85
Query: 553 WK 558
W+
Sbjct: 84 WR 79
Score = 27.7 bits (55), Expect(2) = 2e-011
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +1 / -2
Query: 250 ESSSSKNKKHRWSSEEDEALKQMVKRHGTKNWRTIACA 363
+ K +K W+ +ED L + + HG W +A A
Sbjct: 390 DEEEPKPRKGPWTVQEDMQLIRYISSHGEGRWPFLAKA 277
>gb|BX680288.1|BX680288 BX680288 RS Pinus pinaster cDNA clone RS41E09, mRNA sequence
Length = 469
Score = 52.8 bits (111), Expect(2) = 2e-011
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S++E+ +I+ + GNKW + PGRT++ +K +
Sbjct: 164 RCGKSCRLRWIN*LRPDLKRGSFSEEEDDLIIKLHSLLGNKWSLIAGRLPGRTDNEIKNY 343
Query: 553 W 555
W
Sbjct: 344 W 346
Score = 35.3 bits (72), Expect(2) = 2e-011
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1 / +2
Query: 268 NKKHRWSSEEDEALKQMVKRHGTKNWRTI 354
N K W+ EEDE L ++ HG +WR++
Sbjct: 56 NNKGAWTKEEDERLIAHIEAHGEGSWRSL 142
>gb|CO361899.1|CO361899 NDL2_7_G04.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_7_G04_A029 5', mRNA sequence
Length = 871
Score = 51.0 bits (107), Expect(2) = 3e-011
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + + EE +IR + GN+W + PGRT++ +K +
Sbjct: 144 RCGKSCRLRWLNYLRPCIKRGNITTDEEELIIRMHALLGNRWSIIAGRVPGRTDNEIKNY 323
Query: 553 W 555
W
Sbjct: 324 W 326
Score = 36.2 bits (74), Expect(2) = 3e-011
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K WS+EED L + ++ HG NWR++
Sbjct: 42 KGAWSAEEDSLLGKYIQTHGEGNWRSL 122
>gb|CO361397.1|CO361397 NDL2_4_D03.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_4_D03_A029 5', mRNA sequence
Length = 804
Score = 54.1 bits (114), Expect(2) = 5e-011
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S++E+ +I+ + GNKW + PGRT++ +K +
Sbjct: 107 RCGKSCRLRWINYLRPDLKRGSFSEEEDDLIIKLHSLLGNKWSLIAGRLPGRTDNEIKNY 286
Query: 553 W 555
W
Sbjct: 287 W 289
Score = 32.6 bits (66), Expect(2) = 5e-011
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1 / +2
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ EEDE L ++ HG +WR++
Sbjct: 5 KGAWTKEEDERLIAHIEAHGEGSWRSL 85
>gb|DR050898.1|DR050898 RTBOR1_26_H05.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_26_H05_A029 3', mRNA sequence
Length = 793
Score = 57.7 bits (122), Expect(2) = 5e-011
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +1 / -2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S QEE ++ V GN+W ++ H PGRT++ +K
Sbjct: 558 RCGKSCRLRWINYLRPDLKRGTFSPQEENLIVELHSVLGNRWSQIATHLPGRTDNEIKNL 379
Query: 553 W 555
W
Sbjct: 378 W 376
Score = 40.7 bits (84), Expect = 0.005
Identities = 21/53 (39%), Positives = 28/53 (52%)
Frame = -3 / +2
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFH 399
FQ L + VLPG+C+ I HLFP T C+ SSC + F +G + H
Sbjct: 374 FQRFLISLSVLPGRCVAI*DHLFPRTECSSTMRFSSCGENVPRFRSGLK*LIH 532
Score = 29.0 bits (58), Expect(2) = 5e-011
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1 / -2
Query: 265 KNKKHRWSSEEDEALKQMVKRHGTKNWRTI 354
K +K WS EEDE L + + ++G W +
Sbjct: 669 KLRKGLWSPEEDEKLVRHITKYGHGCWSAV 580
>gb|BQ290999.1|BQ290999 NXRV054_D07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV054_D07 5' similar to Arabidopsis thaliana
sequence At1g09540 putative transcription factor (MYB61)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 764
Score = 57.7 bits (122), Expect(2) = 5e-011
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S QEE ++ V GN+W ++ H PGRT++ +K
Sbjct: 461 RCGKSCRLRWINYLRPDLKRGTFSPQEENLIVELHSVLGNRWSQIATHLPGRTDNEIKNL 640
Query: 553 W 555
W
Sbjct: 641 W 643
Score = 40.7 bits (84), Expect = 0.005
Identities = 21/53 (39%), Positives = 28/53 (52%)
Frame = -3 / -3
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFH 399
FQ L + VLPG+C+ I HLFP T C+ SSC + F +G + H
Sbjct: 645 FQRFLISLSVLPGRCVAI*DHLFPRTECSSTMRFSSCGENVPRFRSGLK*LIH 487
Score = 29.0 bits (58), Expect(2) = 5e-011
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1 / +2
Query: 265 KNKKHRWSSEEDEALKQMVKRHGTKNWRTI 354
K +K WS EEDE L + + ++G W +
Sbjct: 350 KLRKGLWSPEEDEKLVRHITKYGHGCWSAV 439
>gb|DR110104.1|DR110104 RTS1_8_C03.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_8_C03_A029 5', mRNA sequence
Length = 538
Score = 50.5 bits (106), Expect(2) = 5e-011
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + + EE +IR + GN+W + PGRT++ +K +
Sbjct: 338 RCGKSCRLRWLNYLRPCIKRGNITTDEEELIIRMHALLGNRWSIIAGRVPGRTDNEVKNY 517
Query: 553 W 555
W
Sbjct: 518 W 520
Score = 36.2 bits (74), Expect(2) = 5e-011
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1 / +2
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K WS+EED L + ++ HG NWR++
Sbjct: 236 KGAWSAEEDSLLGKYIQTHGEGNWRSL 316
>gb|DR014768.1|DR014768 HEAT1_51_B07.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_B07_A029 5', mRNA sequence
Length = 928
Score = 56.3 bits (119), Expect(2) = 6e-011
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S+QE+ +I+ GNKW + + PGRT++ +K H
Sbjct: 178 RCGKSCRLRWINYLRPDLKRGNFSEQEDELIIKFHSRLGNKWSLIARILPGRTDNEIKNH 357
Query: 553 W 555
W
Sbjct: 358 W 360
Score = 29.9 bits (60), Expect(2) = 6e-011
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1 / +1
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ EED L ++ HG WR++
Sbjct: 76 KGAWTQEEDARLVAHIQAHGEGGWRSL 156
>gb|DR014691.1|DR014691 HEAT1_51_B07.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_B07_A029 3', mRNA sequence
Length = 906
Score = 56.3 bits (119), Expect(2) = 6e-011
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S+QE+ +I+ GNKW + + PGRT++ +K H
Sbjct: 127 RCGKSCRLRWINYLRPDLKRGNFSEQEDELIIKFHSRLGNKWSLIARILPGRTDNEIKNH 306
Query: 553 W 555
W
Sbjct: 307 W 309
Score = 29.9 bits (60), Expect(2) = 6e-011
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1 / +1
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ EED L ++ HG WR++
Sbjct: 25 KGAWTQEEDARLVAHIQAHGEGGWRSL 105
>gb|CF667045.1|CF667045 RTCNT1_27_G11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_27_G11_A029 5', mRNA sequence
Length = 744
Score = 56.3 bits (119), Expect(2) = 6e-011
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S+QE+ +I+ GNKW + + PGRT++ +K H
Sbjct: 144 RCGKSCRLRWINYLRPDLKRGNFSEQEDELIIKFHSRLGNKWSLIARILPGRTDNEIKNH 323
Query: 553 W 555
W
Sbjct: 324 W 326
Score = 29.9 bits (60), Expect(2) = 6e-011
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ EED L ++ HG WR++
Sbjct: 42 KGAWTQEEDARLVAHIQAHGEGGWRSL 122
>gb|DR017658.1|DR017658 STRS1_17_E03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_E03_A034 5', mRNA sequence
Length = 724
Score = 56.3 bits (119), Expect(2) = 6e-011
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S+QE+ +I+ GNKW + + PGRT++ +K H
Sbjct: 127 RCGKSCRLRWINYLRPDLKRGNFSEQEDELIIKFHSRLGNKWSLIARILPGRTDNEIKNH 306
Query: 553 W 555
W
Sbjct: 307 W 309
Score = 29.9 bits (60), Expect(2) = 6e-011
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1 / +1
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ EED L ++ HG WR++
Sbjct: 25 KGAWTQEEDARLVAHIQAHGEGGWRSL 105
>gb|BQ701670.1|BQ701670 NXSI_118_C02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_118_C02 5' similar to Arabidopsis thaliana
sequence At4g38620 putative transcription factor (MYB4)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 549
Score = 56.3 bits (119), Expect(2) = 6e-011
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S+QE+ +I+ GNKW + + PGRT++ +K H
Sbjct: 167 RCGKSCRLRWINYLRPDLKRGNFSEQEDELIIKFHSRLGNKWSLIARILPGRTDNEIKNH 346
Query: 553 W 555
W
Sbjct: 347 W 349
Score = 29.9 bits (60), Expect(2) = 6e-011
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1 / +2
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ EED L ++ HG WR++
Sbjct: 65 KGAWTQEEDARLVAHIQAHGEGGWRSL 145
>gb|CO361315.1|CO361315 NDL2_4_D03.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_4_D03_A029 3', mRNA sequence
Length = 894
Score = 54.1 bits (114), Expect(2) = 9e-011
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S++E+ +I+ + GNKW + PGRT++ +K +
Sbjct: 101 RCGKSCRLRWINYLRPDLKRGSFSEEEDDLIIKLHSLLGNKWSLIAGRLPGRTDNEIKNY 280
Query: 553 W 555
W
Sbjct: 281 W 283
Score = 31.7 bits (64), Expect(2) = 9e-011
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1 / +2
Query: 283 WSSEEDEALKQMVKRHGTKNWRTI 354
W+ EEDE L ++ HG +WR++
Sbjct: 8 WTKEEDERLIAHIEAHGEGSWRSL 79
>gb|CF667292.1|CF667292 RTCNT1_29_G02.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_29_G02_A029 3', mRNA sequence
Length = 681
Score = 57.7 bits (122), Expect(2) = 9e-011
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +1 / -2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R A SC RW L P I + S EE +IR ++ GN+W + PGRT++ +K +
Sbjct: 506 RRAKSCRIRWLNYLRPGIKRGNISHDEEELIIRMHRLLGNRWSLIAGRLPGRTDNEIKNY 327
Query: 553 W 555
W
Sbjct: 326 W 324
Score = 28.1 bits (56), Expect(2) = 9e-011
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +1 / -2
Query: 283 WSSEEDEALKQMVKRHGTKNWRTI 354
W+++ED L ++ HG WR +
Sbjct: 599 WTAKEDMILSDYIRIHGDGGWRNL 528
>gb|DR744198.1|DR744198 RTCU1_20_G08.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_20_G08_A029 5', mRNA sequence
Length = 644
Score = 50.5 bits (106), Expect(2) = 9e-011
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S+ E+ +++ + GNKW + PGRT++ +K +
Sbjct: 220 RCGKSCRLRWINYLRPDLKRGFFSEDEDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNY 399
Query: 553 W 555
W
Sbjct: 400 W 402
Score = 35.3 bits (72), Expect(2) = 9e-011
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1 / +1
Query: 256 SSSKNKKHRWSSEEDEALKQMVKRHGTKNWRTI 354
S+ K W+ EED+ L Q +K HG WR++
Sbjct: 100 SNGDRNKGAWTKEEDDRLIQYIKVHGEGCWRSL 198
Score = 32.6 bits (66), Expect = 1.5
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = -3 / -1
Query: 530 VLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLERHELAFR 372
V PGK I HLFP C+ SSS ++ +G R + HL L R
Sbjct: 377 VRPGKRPAIKDHLFPRRACSLRIRSSSSSEKNPRLRSGRR*FIHLSLQLLPHR 219
>gb|CO367178.1|CO367178 RTK1_32_E03.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_32_E03_A029 5', mRNA sequence
Length = 873
Score = 51.4 bits (108), Expect(2) = 1e-010
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S+ E+ +++ + GNKW + PGRT++ +K +
Sbjct: 157 RCGKSCRLRWINYLRPDLKRGGFSEDEDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNY 336
Query: 553 W 555
W
Sbjct: 337 W 339
Score = 35.3 bits (72), Expect = 0.22
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = -3 / -2
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHL 396
FQ L + V PGK I HLFP C+ SSS ++ F +G R + HL
Sbjct: 341 FQ*FLISLSVRPGKRPAIRDHLFPRRACSLRIRSSSSSEKPPRFRSGRR*FIHL 180
Score = 33.9 bits (69), Expect(2) = 1e-010
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1 / +1
Query: 256 SSSKNKKHRWSSEEDEALKQMVKRHGTKNWRTI 354
++ K W+ EED+ L Q ++ HG WR++
Sbjct: 37 ANGDRSKGAWTKEEDDRLTQYIQAHGEGCWRSL 135
>gb|DR011035.1|DR011035 HEAT1_3_A03.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_3_A03_A029 3', mRNA sequence
Length = 790
Score = 51.4 bits (108), Expect(2) = 1e-010
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1 / -1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S+ E+ +++ + GNKW + PGRT++ +K +
Sbjct: 640 RCGKSCRLRWINYLRPDLKRGGFSEDEDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNY 461
Query: 553 W 555
W
Sbjct: 460 W 458
Score = 35.3 bits (72), Expect = 0.22
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = -3 / +3
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHL 396
FQ L + V PGK I HLFP C+ SSS ++ F +G R + HL
Sbjct: 456 FQ*FLISLSVRPGKRPAIRDHLFPRRACSLRIRSSSSSEKPPRFRSGRR*FIHL 617
Score = 33.9 bits (69), Expect(2) = 1e-010
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1 / -1
Query: 256 SSSKNKKHRWSSEEDEALKQMVKRHGTKNWRTI 354
++ K W+ EED+ L Q ++ HG WR++
Sbjct: 760 ANGDRSKGAWTKEEDDRLTQYIQAHGEGCWRSL 662
>gb|DR023090.1|DR023090 STRS1_55_A05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_55_A05_A034 5', mRNA sequence
Length = 752
Score = 51.4 bits (108), Expect(2) = 1e-010
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S+ E+ +++ + GNKW + PGRT++ +K +
Sbjct: 162 RCGKSCRLRWINYLRPDLKRGGFSEDEDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNY 341
Query: 553 W 555
W
Sbjct: 342 W 344
Score = 35.3 bits (72), Expect = 0.22
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = -3 / -2
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHL 396
FQ L + V PGK I HLFP C+ SSS ++ F +G R + HL
Sbjct: 346 FQ*FLISLSVRPGKRPAIRDHLFPRRACSLRIRSSSSSEKPPRFRSGRR*FIHL 185
Score = 33.9 bits (69), Expect(2) = 1e-010
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1 / +3
Query: 256 SSSKNKKHRWSSEEDEALKQMVKRHGTKNWRTI 354
++ K W+ EED+ L Q ++ HG WR++
Sbjct: 42 ANGDRSKGAWTKEEDDRLTQYIQAHGEGCWRSL 140
>gb|DR161451.1|DR161451 RTFE1_11_H03.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_11_H03_A029 5', mRNA sequence
Length = 669
Score = 51.4 bits (108), Expect(2) = 1e-010
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S+ E+ +++ + GNKW + PGRT++ +K +
Sbjct: 162 RCGKSCRLRWINYLRPDLKRGGFSEDEDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNY 341
Query: 553 W 555
W
Sbjct: 342 W 344
Score = 35.3 bits (72), Expect = 0.22
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = -3 / -3
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHL 396
FQ L + V PGK I HLFP C+ SSS ++ F +G R + HL
Sbjct: 346 FQ*FLISLSVRPGKRPAIRDHLFPRRACSLRIRSSSSSEKPPRFRSGRR*FIHL 185
Score = 33.9 bits (69), Expect(2) = 1e-010
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1 / +3
Query: 256 SSSKNKKHRWSSEEDEALKQMVKRHGTKNWRTI 354
++ K W+ EED+ L Q ++ HG WR++
Sbjct: 42 ANGDRSKGAWTKEEDDRLTQYIQAHGEGCWRSL 140
>gb|CF472757.1|CF472757 RTDS1_11_D09.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_11_D09_A015 5', mRNA sequence
Length = 667
Score = 51.4 bits (108), Expect(2) = 1e-010
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S+ E+ +++ + GNKW + PGRT++ +K +
Sbjct: 155 RCGKSCRLRWINYLRPDLKRGGFSEDEDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNY 334
Query: 553 W 555
W
Sbjct: 335 W 337
Score = 35.3 bits (72), Expect = 0.22
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = -3 / -2
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHL 396
FQ L + V PGK I HLFP C+ SSS ++ F +G R + HL
Sbjct: 339 FQ*FLISLSVRPGKRPAIRDHLFPRRACSLRIRSSSSSEKPPRFRSGRR*FIHL 178
Score = 33.9 bits (69), Expect(2) = 1e-010
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1 / +2
Query: 256 SSSKNKKHRWSSEEDEALKQMVKRHGTKNWRTI 354
++ K W+ EED+ L Q ++ HG WR++
Sbjct: 35 ANGDRSKGAWTKEEDDRLTQYIQAHGEGCWRSL 133
>gb|CF393225.1|CF393225 RTDR3_17_D12.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_17_D12_A022 5', mRNA
sequence
Length = 659
Score = 51.4 bits (108), Expect(2) = 1e-010
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S+ E+ +++ + GNKW + PGRT++ +K +
Sbjct: 184 RCGKSCRLRWINYLRPDLKRGGFSEDEDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNY 363
Query: 553 W 555
W
Sbjct: 364 W 366
Score = 35.3 bits (72), Expect = 0.22
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = -3 / -1
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHL 396
FQ L + V PGK I HLFP C+ SSS ++ F +G R + HL
Sbjct: 368 FQ*FLISLSVRPGKRPAIRDHLFPRRACSLRIRSSSSSEKPPRFRSGRR*FIHL 207
Score = 33.9 bits (69), Expect(2) = 1e-010
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1 / +1
Query: 256 SSSKNKKHRWSSEEDEALKQMVKRHGTKNWRTI 354
++ K W+ EED+ L Q ++ HG WR++
Sbjct: 64 ANGDRSKGAWTKEEDDRLTQYIQAHGEGCWRSL 162
>gb|DR099337.1|DR099337 STRR1_54_G08.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_54_G08_A033 5', mRNA sequence
Length = 499
Score = 51.4 bits (108), Expect(2) = 1e-010
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S+ E+ +++ + GNKW + PGRT++ +K +
Sbjct: 132 RCGKSCRLRWINYLRPDLKRGGFSEDEDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNY 311
Query: 553 W 555
W
Sbjct: 312 W 314
Score = 35.3 bits (72), Expect = 0.22
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = -3 / -1
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHL 396
FQ L + V PGK I HLFP C+ SSS ++ F +G R + HL
Sbjct: 316 FQ*FLISLSVRPGKRPAIRDHLFPRRACSLRIRSSSSSEKPPRFRSGRR*FIHL 155
Score = 33.9 bits (69), Expect(2) = 1e-010
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1 / +3
Query: 256 SSSKNKKHRWSSEEDEALKQMVKRHGTKNWRTI 354
++ K W+ EED+ L Q ++ HG WR++
Sbjct: 12 ANGDRSKGAWTKEEDDRLTQYIQAHGEGCWRSL 110
>gb|CF391376.1|CF391376 RTDR3_1_G04.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_1_G04_A022 5', mRNA
sequence
Length = 480
Score = 52.3 bits (110), Expect(2) = 1e-010
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + ++ QEE +I+ + GN+W + P RT++ +K +
Sbjct: 240 RCGKSCRLRWTNYLRPDIKRGKFNPQEEQTIIQLHALLGNRWSTITTQLPKRTDNEIKNY 419
Query: 553 W 555
W
Sbjct: 420 W 422
Score = 33.0 bits (67), Expect(2) = 1e-010
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1 / +3
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNWRTI 354
KK W+ EED+ L ++ HG +WR +
Sbjct: 135 KKGPWTPEEDQKLLAYIQEHGHGSWRAL 218
>gb|BX678005.1|BX678005 BX678005 RN Pinus pinaster cDNA clone RN55A12, mRNA sequence
Length = 423
Score = 52.3 bits (110), Expect(2) = 1e-010
Identities = 22/54 (40%), Positives = 28/54 (51%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTN 534
R SC RW L P I + +S +EE +I V GNKW + H PGRT+
Sbjct: 261 RCGKSCRLRWTNYLRPDIKRGQFSYEEEQTIIELHAVLGNKWSTIAGHLPGRTD 422
Score = 39.8 bits (82), Expect = 0.009
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = -3 / -3
Query: 530 VLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHL 396
VLPG+C I+ HLFP T + I + SS + FI+G + HL
Sbjct: 418 VLPGRCPAIVDHLFPRTAWSSIIVCSSSYENCPRFISGLK*LVHL 284
Score = 32.6 bits (66), Expect(2) = 1e-010
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1 / +3
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNWRTI 354
KK W+ EED+ L ++ HG +WR +
Sbjct: 156 KKGPWTPEEDQKLIDYIQSHGHGSWRAL 239
>gb|CX646616.1|CX646616 COLD1_10_A05.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_10_A05_A029 5', mRNA sequence
Length = 887
Score = 56.8 bits (120), Expect(2) = 2e-010
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = +1 / +3
Query: 367 PGRNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALK 546
P R SC RW L P + + ++++E+ +I+ V GNKW + PGRT++ +K
Sbjct: 129 PPRCGKSCRLRWINYLRPDLKRGSFTEEEDELIIKLHSVVGNKWSLIAGRLPGRTDNEIK 308
Query: 547 EHW 555
+W
Sbjct: 309 NYW 317
Score = 28.1 bits (56), Expect(2) = 2e-010
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ EED L ++ +G +WR++
Sbjct: 33 KGAWTKEEDHRLIAYIRANGEGSWRSL 113
>gb|CO365658.1|CO365658 RTK1_18_A01.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_18_A01_A029 5', mRNA sequence
Length = 812
Score = 51.4 bits (108), Expect(2) = 2e-010
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S+ E+ +++ + GNKW + PGRT++ +K +
Sbjct: 103 RCGKSCRLRWINYLRPDLKRGGFSEDEDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNY 282
Query: 553 W 555
W
Sbjct: 283 W 285
Score = 35.3 bits (72), Expect = 0.22
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = -3 / -1
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHL 396
FQ L + V PGK I HLFP C+ SSS ++ F +G R + HL
Sbjct: 287 FQ*FLISLSVRPGKRPAIRDHLFPRRACSLRIRSSSSSEKPPRFRSGRR*FIHL 126
Score = 33.5 bits (68), Expect(2) = 2e-010
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1 / +1
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ EED+ L Q ++ HG WR++
Sbjct: 1 KGAWTKEEDDRLTQYIQAHGEGCWRSL 81
>gb|CO200901.1|CO200901 RTCNT2_2_G06.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_2_G06_A029 3', mRNA sequence
Length = 863
Score = 53.7 bits (113), Expect(2) = 2e-010
Identities = 21/61 (34%), Positives = 33/61 (54%)
Frame = +1 / -3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + +S +E+ +I+ + GNKW + PGRT++ +K +
Sbjct: 684 RCGKSCRLRWINYLRPDIKRGNFSSEEDELIIQLHSLIGNKWSLIAAKLPGRTDNEIKNY 505
Query: 553 W 555
W
Sbjct: 504 W 502
Score = 30.8 bits (62), Expect(2) = 2e-010
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1 / -3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACA 363
K W+ EED+ L ++ HG WR++ A
Sbjct: 786 KGAWTKEEDDRLIAHIRAHGEGCWRSLPTA 697
>gb|DR384837.1|DR384837 RTHG1_4_H08.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_4_H08_A029 5', mRNA sequence
Length = 784
Score = 54.6 bits (115), Expect(2) = 2e-010
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + + +EE +I + +GN+W ++ + PGRT++ +K
Sbjct: 194 RTGKSCRLRWVNYLRPDLKRSKITPEEERLIIELHRRWGNRWSRIAQSLPGRTDNEIKNF 373
Query: 553 WK 558
W+
Sbjct: 374 WR 379
Score = 29.9 bits (60), Expect(2) = 2e-010
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1 / +2
Query: 241 NFTESSSSKNKKHRWSSEEDEALKQMVKRHGTKNWRTIACA 363
+F + + +K W+ EED L +V HG W +A A
Sbjct: 59 DFDYENEADTRKGPWTVEEDMQLIGIVNLHGEGRWNFLARA 181
Score = 25.4 bits (50), Expect(2) = 9.1
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3 / -2
Query: 530 VLPGKCLTILHHLFP 486
VLPGK I HLFP
Sbjct: 351 VLPGKLCAIRDHLFP 307
Score = 23.2 bits (45), Expect(2) = 9.1
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3 / -2
Query: 332 PCLFTICFSASSSSDDH 282
PC FTI S SSS H
Sbjct: 150 PCKFTIPISCMSSSTVH 100
>gb|CV033497.1|CV033497 RTNACL1_34_H05.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_34_H05_A029 5', mRNA sequence
Length = 724
Score = 54.6 bits (115), Expect(2) = 2e-010
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + + +EE +I + +GN+W ++ + PGRT++ +K
Sbjct: 189 RTGKSCRLRWVNYLRPDLKRSKITPEEERLIIELHRRWGNRWSRIAQSLPGRTDNEIKNF 368
Query: 553 WK 558
W+
Sbjct: 369 WR 374
Score = 29.9 bits (60), Expect(2) = 2e-010
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1 / +3
Query: 241 NFTESSSSKNKKHRWSSEEDEALKQMVKRHGTKNWRTIACA 363
+F + + +K W+ EED L +V HG W +A A
Sbjct: 54 DFDYENEADTRKGPWTVEEDMQLIGIVNLHGEGRWNFLARA 176
Score = 25.4 bits (50), Expect(2) = 8.4
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3 / -1
Query: 530 VLPGKCLTILHHLFP 486
VLPGK I HLFP
Sbjct: 346 VLPGKLCAIRDHLFP 302
Score = 23.2 bits (45), Expect(2) = 8.4
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3 / -1
Query: 332 PCLFTICFSASSSSDDH 282
PC FTI S SSS H
Sbjct: 145 PCKFTIPISCMSSSTVH 95
>gb|BX784172.1|BX784172 BX784172 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 130B11, mRNA sequence
Length = 685
Score = 55.5 bits (117), Expect(2) = 2e-010
Identities = 21/61 (34%), Positives = 32/61 (52%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S QEE +I + GN+W ++ PGRT++ +K
Sbjct: 203 RCGKSCRLRWINYLRPDLKRGAFSPQEEQLIIHLHSILGNRWSQIAARLPGRTDNEIKNF 382
Query: 553 W 555
W
Sbjct: 383 W 385
Score = 29.0 bits (58), Expect(2) = 2e-010
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1 / +2
Query: 256 SSSKNKKHRWSSEEDEALKQMVKRHGTKNWRTIA 357
S K +K WS EED+ L + ++G W +A
Sbjct: 83 SKPKLRKGLWSPEEDDKLINYMMKNGQGCWSDVA 184
>gb|DR089238.1|DR089238 RTAL1_7_A05.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_7_A05_A029 5', mRNA sequence
Length = 664
Score = 54.6 bits (115), Expect(2) = 2e-010
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + + +EE +I + +GN+W ++ + PGRT++ +K
Sbjct: 155 RTGKSCRLRWVNYLRPDLKRSKITPEEERLIIELHRRWGNRWSRIAQSLPGRTDNEIKNF 334
Query: 553 WK 558
W+
Sbjct: 335 WR 340
Score = 29.9 bits (60), Expect(2) = 2e-010
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1 / +2
Query: 241 NFTESSSSKNKKHRWSSEEDEALKQMVKRHGTKNWRTIACA 363
+F + + +K W+ EED L +V HG W +A A
Sbjct: 20 DFDYENEADTRKGPWTVEEDMQLIGIVNLHGEGRWNFLARA 142
Score = 25.4 bits (50), Expect(2) = 7.8
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3 / -2
Query: 530 VLPGKCLTILHHLFP 486
VLPGK I HLFP
Sbjct: 312 VLPGKLCAIRDHLFP 268
Score = 23.2 bits (45), Expect(2) = 7.8
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3 / -2
Query: 332 PCLFTICFSASSSSDDH 282
PC FTI S SSS H
Sbjct: 111 PCKFTIPISCMSSSTVH 61
>gb|CX650454.1|CX650454 COLD1_45_F10.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_45_F10_A029 5', mRNA sequence
Length = 826
Score = 54.1 bits (114), Expect(2) = 3e-010
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S++E+ +I+ + GNKW + PGRT++ +K +
Sbjct: 184 RCGKSCRLRWINYLRPDLKRGNFSEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNY 363
Query: 553 W 555
W
Sbjct: 364 W 366
Score = 29.9 bits (60), Expect(2) = 3e-010
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1 / +1
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ EED+ L ++ HG WR++
Sbjct: 82 KGAWTKEEDDRLIAHIRTHGEGCWRSL 162
>gb|DR024153.1|DR024153 STRS1_62_E05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_62_E05_A034 5', mRNA sequence
Length = 791
Score = 54.1 bits (114), Expect(2) = 3e-010
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S++E+ +I+ + GNKW + PGRT++ +K +
Sbjct: 179 RCGKSCRLRWINYLRPDLKRGNFSEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNY 358
Query: 553 W 555
W
Sbjct: 359 W 361
Score = 29.9 bits (60), Expect(2) = 3e-010
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1 / +2
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ EED+ L ++ HG WR++
Sbjct: 77 KGAWTKEEDDRLIAHIRTHGEGCWRSL 157
>gb|CO176256.1|CO176256 NDL1_60_G12.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_60_G12_A029 5', mRNA sequence
Length = 769
Score = 55.9 bits (118), Expect(2) = 3e-010
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R+ SC RW L P I + S EE +IR ++ GN+W + PGRT++ +K +
Sbjct: 186 RSGKSCRLRWMNYLRPNIKRGDISPDEEELIIRLHRLLGNRWSLIAGRLPGRTDNEIKNY 365
Query: 553 W 555
W
Sbjct: 366 W 368
Score = 28.1 bits (56), Expect(2) = 3e-010
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1 / +3
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNW 345
K+ WS +ED L Q ++ HG W
Sbjct: 81 KRGTWSVQEDMILLQYIRIHGHGEW 155
>gb|CF387084.1|CF387084 RTDR1_10_E10.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_10_E10_A015 5', mRNA
sequence
Length = 733
Score = 54.1 bits (114), Expect(2) = 3e-010
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S++E+ +I+ + GNKW + PGRT++ +K +
Sbjct: 153 RCGKSCRLRWINYLRPDLKRGNFSEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNY 332
Query: 553 W 555
W
Sbjct: 333 W 335
Score = 29.9 bits (60), Expect(2) = 3e-010
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ EED+ L ++ HG WR++
Sbjct: 51 KGAWTKEEDDRLIAHIRTHGEGCWRSL 131
>gb|CF470618.1|CF470618 RTDS1_13_H10.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_13_H10_A015 5', mRNA sequence
Length = 723
Score = 58.6 bits (124), Expect(2) = 3e-010
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + +S +EE +I Q N+W ++ KH PGRT+ +K +
Sbjct: 286 RCGKSCRLRWMNYLRPGIKRGNFSTEEENVIISLQARLNNRWAQIAKHLPGRTDTEIKNY 465
Query: 553 W 555
W
Sbjct: 466 W 468
Score = 25.4 bits (50), Expect(2) = 3e-010
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1 / +1
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNWRTIA 357
K+ WS EED L + HG W +++
Sbjct: 181 KRGFWSPEEDMKLITYITTHGHGCWSSLS 267
>gb|CF388213.1|CF388213 RTDR2_1_B07.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_1_B07_A021 5', mRNA
sequence
Length = 712
Score = 54.1 bits (114), Expect(2) = 3e-010
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S++E+ +I+ + GNKW + PGRT++ +K +
Sbjct: 195 RCGKSCRLRWINYLRPDLKRGNFSEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNY 374
Query: 553 W 555
W
Sbjct: 375 W 377
Score = 29.9 bits (60), Expect(2) = 3e-010
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ EED+ L ++ HG WR++
Sbjct: 93 KGAWTKEEDDRLIAHIRTHGEGCWRSL 173
>gb|CF669490.1|CF669490 RTCNT1_44_A10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_44_A10_A029 3', mRNA sequence
Length = 655
Score = 52.8 bits (111), Expect(2) = 3e-010
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1 / -2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S+ E+ +++ + GNKW + PGRT++ +K +
Sbjct: 510 RCGKSCRLRWMNYLRPQLKRGNFSEDEDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNY 331
Query: 553 W 555
W
Sbjct: 330 W 328
Score = 31.2 bits (63), Expect = 3.9
Identities = 22/62 (35%), Positives = 27/62 (43%)
Frame = -3 / +2
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLERHELA 378
FQ L + V PGK I HL P C+ SSS ++ F G R + HL L
Sbjct: 326 FQ*FLISLSVRPGKRPAIRDHLLPRRACSLRIRSSSSSEKFPRFS*GRR*FIHLSLQLLP 505
Query: 377 FR 372
R
Sbjct: 506 HR 511
Score = 31.2 bits (63), Expect(2) = 3e-010
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1 / -2
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ EED+ L Q ++ HG W ++
Sbjct: 612 KGAWTREEDDKLIQYIQTHGEGGWNSL 532
>gb|DR111240.1|DR111240 RTS1_16_G05.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_16_G05_A029 3', mRNA sequence
Length = 625
Score = 54.1 bits (114), Expect(2) = 3e-010
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1 / -3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S++E+ +I+ + GNKW + PGRT++ +K +
Sbjct: 497 RCGKSCRLRWINYLRPDLKRGNFSEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNY 318
Query: 553 W 555
W
Sbjct: 317 W 315
Score = 29.9 bits (60), Expect(2) = 3e-010
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1 / -3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ EED+ L ++ HG WR++
Sbjct: 599 KGAWTKEEDDRLIAHIRTHGEGCWRSL 519
>gb|CF396041.1|CF396041 RTDS2_20_C12.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_20_C12_A021 5', mRNA sequence
Length = 607
Score = 58.6 bits (124), Expect(2) = 3e-010
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + +S +EE +I Q N+W ++ KH PGRT+ +K +
Sbjct: 288 RCGKSCRLRWMNYLRPGIKRGNFSTEEENVIISLQARLNNRWAQIAKHLPGRTDTEIKNY 467
Query: 553 W 555
W
Sbjct: 468 W 470
Score = 25.4 bits (50), Expect(2) = 3e-010
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1 / +3
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNWRTIA 357
K+ WS EED L + HG W +++
Sbjct: 183 KRGFWSPEEDMKLITYITTHGHGCWSSLS 269
>gb|BX681391.1|BX681391 BX681391 RS Pinus pinaster cDNA clone RS58C06, mRNA sequence
Length = 605
Score = 54.1 bits (114), Expect(2) = 3e-010
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S++E+ +I+ + GNKW + PGRT++ +K +
Sbjct: 141 RCGKSCRLRWINYLRPDLKRGNFSEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNY 320
Query: 553 W 555
W
Sbjct: 321 W 323
Score = 29.9 bits (60), Expect(2) = 3e-010
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ EED+ L ++ HG WR++
Sbjct: 39 KGAWTKEEDDRLIAHIRTHGEGCWRSL 119
>gb|BQ696771.1|BQ696771 NXPV_045_A10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_045_A10 5' similar to Arabidopsis
thaliana sequence At1g17950 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 503
Score = 65.3 bits (139), Expect = 3e-010
Identities = 25/72 (34%), Positives = 43/72 (59%)
Frame = +1 / +2
Query: 283 WSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQEELR 462
W EDE L+++V+++G +N +IA + SC RW L IN+ P++++E R
Sbjct: 281 WRPAEDEKLRELVEQYGPQNXXSIAEKLHXXXXKSCRLRWFNQLXXRINRRPFTEEEXXR 460
Query: 463 LIRAQQVYGNKW 498
L+ +++GNKW
Sbjct: 461 LLAXHRLHGNKW 496
>gb|AY356371.1| Pinus taeda R2R3-MYB transcription factor (MYB4) mRNA, complete cds
Length = 945
Score = 54.6 bits (115), Expect(2) = 4e-010
Identities = 21/61 (34%), Positives = 32/61 (52%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S QEE +I + GN+W ++ PGRT++ +K
Sbjct: 157 RCGKSCRLRWINYLRPDLKRGAFSPQEEHWIIHLHSILGNRWSQIAARLPGRTDNEIKNF 336
Query: 553 W 555
W
Sbjct: 337 W 339
Score = 29.0 bits (58), Expect(2) = 4e-010
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1 / +1
Query: 256 SSSKNKKHRWSSEEDEALKQMVKRHGTKNWRTIA 357
S K +K WS EED+ L + ++G W +A
Sbjct: 37 SKPKLRKGLWSPEEDDKLINYMMKNGQGCWSDVA 138
>gb|DR059561.1|DR059561 RTNIT1_18_A02.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_18_A02_A029 5', mRNA sequence
Length = 737
Score = 55.9 bits (118), Expect(2) = 4e-010
Identities = 23/61 (37%), Positives = 34/61 (55%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R A SC RW L P I + S +EE +IR ++ GN+W + PGRT++ +K +
Sbjct: 167 RCAKSCRLRWLNYLRPDIKRGNISPEEEELIIRLHRLLGNRWSLIAGRLPGRTDNEIKNY 346
Query: 553 W 555
W
Sbjct: 347 W 349
Score = 27.7 bits (55), Expect(2) = 4e-010
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +1 / +2
Query: 283 WSSEEDEALKQMVKRHGTKNWRTIA 357
W+ ED L + ++ HG+ W+ I+
Sbjct: 74 WTGMEDTILTEYIRVHGSGGWKDIS 148
>gb|DR060728.1|DR060728 RTNIT1_29_D06.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_29_D06_A029 5', mRNA sequence
Length = 726
Score = 54.1 bits (114), Expect(2) = 4e-010
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S++E+ +I+ + GNKW + PGRT++ +K +
Sbjct: 167 RCGKSCRLRWINYLRPDLKRGNFSEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNY 346
Query: 553 W 555
W
Sbjct: 347 W 349
Score = 29.4 bits (59), Expect(2) = 4e-010
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1 / +2
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ EED+ L ++ HG WR++
Sbjct: 65 KGGWTKEEDDRLIAHIRTHGEGCWRSL 145
>gb|DR386238.1|DR386238 RTHG1_13_G03.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_13_G03_A029 5', mRNA sequence
Length = 600
Score = 54.6 bits (115), Expect(2) = 4e-010
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + S EE +IR + GN+W + PGRT+D +K +
Sbjct: 224 RRGKSCRLRWMNHLRPNVKRGHISADEEELIIRLHNLLGNRWSLIAGRVPGRTDDEVKNY 403
Query: 553 W 555
W
Sbjct: 404 W 406
Score = 29.0 bits (58), Expect(2) = 4e-010
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1 / +2
Query: 283 WSSEEDEALKQMVKRHGTKNWRTI 354
W+ EED LK ++ +G W T+
Sbjct: 131 WTPEEDRILKTYIEANGVGRWSTL 202
>gb|DR081462.1|DR081462 RTFEPL1_29_G04.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_29_G04_A029 5', mRNA sequence
Length = 518
Score = 55.9 bits (118), Expect(2) = 4e-010
Identities = 23/61 (37%), Positives = 34/61 (55%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R A SC RW L P I + S +EE +IR ++ GN+W + PGRT++ +K +
Sbjct: 183 RCAKSCRLRWLNYLRPDIKRGNISPEEEELIIRLHRLLGNRWSLIAGRLPGRTDNEIKNY 362
Query: 553 W 555
W
Sbjct: 363 W 365
Score = 27.7 bits (55), Expect(2) = 4e-010
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +1 / +3
Query: 283 WSSEEDEALKQMVKRHGTKNWRTIA 357
W+ ED L + ++ HG+ W+ I+
Sbjct: 90 WTGMEDTILTEYIRVHGSGGWKDIS 164
>gb|DR161095.1|DR161095 RTFE1_9_G03.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_9_G03_A029 5', mRNA sequence
Length = 760
Score = 53.7 bits (113), Expect(2) = 5e-010
Identities = 21/61 (34%), Positives = 33/61 (54%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + +S +E+ +I+ + GNKW + PGRT++ +K +
Sbjct: 191 RCGKSCRLRWINYLRPDIKRGNFSSEEDELIIQLHSLIGNKWSLIAAKLPGRTDNEIKNY 370
Query: 553 W 555
W
Sbjct: 371 W 373
Score = 29.4 bits (59), Expect(2) = 5e-010
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1 / +2
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ EED+ L ++ HG WR++
Sbjct: 89 KGAWTKEEDDHLIAHIRAHGEGCWRSL 169
>gb|DR079932.1|DR079932 RTFEPL1_18_F11.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_18_F11_A029 5', mRNA sequence
Length = 689
Score = 52.8 bits (111), Expect(2) = 5e-010
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S+ E+ +++ + GNKW + PGRT++ +K +
Sbjct: 102 RCGKSCRLRWMNYLRPQLKRGNFSEDEDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNY 281
Query: 553 W 555
W
Sbjct: 282 W 284
Score = 31.2 bits (63), Expect = 3.9
Identities = 22/62 (35%), Positives = 27/62 (43%)
Frame = -3 / -2
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLERHELA 378
FQ L + V PGK I HL P C+ SSS ++ F G R + HL L
Sbjct: 286 FQ*FLISLSVRPGKRPAIRDHLLPRRACSLRIRSSSSSEKFPRFS*GRR*FIHLSLQLLP 107
Query: 377 FR 372
R
Sbjct: 106 HR 101
Score = 30.3 bits (61), Expect(2) = 5e-010
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1 / +3
Query: 283 WSSEEDEALKQMVKRHGTKNWRTI 354
W+ EED+ L Q ++ HG W ++
Sbjct: 9 WTREEDDRLIQYIQAHGEGGWNSL 80
>gb|CF663690.1|CF663690 RTCNT1_4_C02.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_4_C02_A029 5', mRNA sequence
Length = 673
Score = 54.6 bits (115), Expect(2) = 5e-010
Identities = 19/62 (30%), Positives = 35/62 (56%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + + QEE +I+ +GN+W ++ ++ GRT++ +K +
Sbjct: 415 RTGKSCRLRWINYLRPDLKRSKITPQEERLIIKLHHRWGNRWSRIAQNLSGRTDNEIKNY 594
Query: 553 WK 558
W+
Sbjct: 595 WR 600
Score = 28.6 bits (57), Expect(2) = 5e-010
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +1 / +1
Query: 250 ESSSSKNKKHRWSSEEDEALKQMVKRHGTKNWRTIACA 363
+ K +K W+ +ED L + + HG W +A A
Sbjct: 289 DEEEPKTRKGPWTVQEDMQLIRYINSHGEGRWPFLAKA 402
>gb|DR055413.1|DR055413 RTCA1_23_C03.g2_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_23_C03_A029 5', mRNA sequence
Length = 535
Score = 51.4 bits (108), Expect(2) = 6e-010
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R+ SC RW L I S +EE LIR ++ GN+W + PGRT++ +K +
Sbjct: 214 RSGKSCRLRWFNYLRSDIKHGNISPEEEELLIRLHRLLGNRWSLIAGRLPGRTDNEIKNY 393
Query: 553 W 555
W
Sbjct: 394 W 396
Score = 32.6 bits (66), Expect(2) = 6e-010
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1 / +2
Query: 283 WSSEEDEALKQMVKRHGTKNWRTI 354
WS+EED L + +K HG W ++
Sbjct: 11 WSAEEDTILSEHIKTHGVGRWTSL 82
>gb|AY356372.1| Pinus taeda R2R3-MYB transcription factor (MYB1) mRNA, complete cds
Length = 1023
Score = 52.3 bits (110), Expect(2) = 7e-010
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + S+ EE +I GN+W ++ PGRT++ +K +
Sbjct: 142 RCGKSCRLRWTNYLRPDLKRGLLSESEEKLIIDLHAAIGNRWSRIAAQLPGRTDNEIKNY 321
Query: 553 W 555
W
Sbjct: 322 W 324
Score = 36.6 bits (75), Expect = 0.086
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -3 / -2
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSR 411
FQ L + VLPG C I HLFP C + SS D F +G +
Sbjct: 326 FQ*FLISLSVLPGNCAAIRDHLFPMAACRSMMSFSSDSDNNPRFKSGRK 180
Score = 30.3 bits (61), Expect(2) = 7e-010
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1 / +1
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNWRTI 354
KK W++EED L + HG WR +
Sbjct: 37 KKGPWTAEEDRKLVNFITLHGHGCWREV 120
>gb|DR057958.1|DR057958 RTNIT1_8_G05.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_8_G05_A029 5', mRNA sequence
Length = 849
Score = 54.6 bits (115), Expect(2) = 7e-010
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + ++++E+ +I+ V GNKW + PGRT++ +K +
Sbjct: 103 RCGKSCRLRWINYLRPDLKRGSFTEEEDELIIKLHSVVGNKWSLIAGRLPGRTDNEIKNY 282
Query: 553 W 555
W
Sbjct: 283 W 285
Score = 28.1 bits (56), Expect(2) = 7e-010
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1 / +1
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ EED L ++ +G +WR++
Sbjct: 1 KGAWTKEEDHRLIAYIRANGEGSWRSL 81
>gb|DR387764.1|DR387764 RTHG1_24_A11.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_24_A11_A029 3', mRNA sequence
Length = 796
Score = 54.6 bits (115), Expect(2) = 7e-010
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1 / -3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + ++++E+ +I+ V GNKW + PGRT++ +K +
Sbjct: 650 RCGKSCRLRWINYLRPDLKRGSFTEEEDELIIKLHSVVGNKWSLIAGRLPGRTDNEIKNY 471
Query: 553 W 555
W
Sbjct: 470 W 468
Score = 28.1 bits (56), Expect(2) = 7e-010
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1 / -3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ EED L ++ +G +WR++
Sbjct: 752 KGAWTKEEDHRLIAYIRANGEGSWRSL 672
>gb|CF401736.1|CF401736 RTWW1_14_C05.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_14_C05_A015 5', mRNA sequence
Length = 792
Score = 54.6 bits (115), Expect(2) = 7e-010
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + ++++E+ +I+ V GNKW + PGRT++ +K +
Sbjct: 135 RCGKSCRLRWINYLRPDLKRGSFTEEEDELIIKLHSVVGNKWSLIAGRLPGRTDNEIKNY 314
Query: 553 W 555
W
Sbjct: 315 W 317
Score = 28.1 bits (56), Expect(2) = 7e-010
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ EED L ++ +G +WR++
Sbjct: 33 KGAWTKEEDHRLIAYIRANGEGSWRSL 113
>gb|DR387774.1|DR387774 RTHG1_24_B11.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_24_B11_A029 3', mRNA sequence
Length = 781
Score = 54.6 bits (115), Expect(2) = 7e-010
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1 / -3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + ++++E+ +I+ V GNKW + PGRT++ +K +
Sbjct: 626 RCGKSCRLRWINYLRPDLKRGSFTEEEDELIIKLHSVVGNKWSLIAGRLPGRTDNEIKNY 447
Query: 553 W 555
W
Sbjct: 446 W 444
Score = 28.1 bits (56), Expect(2) = 7e-010
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1 / -3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ EED L ++ +G +WR++
Sbjct: 728 KGAWTKEEDHRLIAYIRANGEGSWRSL 648
>gb|DR161238.1|DR161238 RTFE1_10_D10.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_10_D10_A029 5', mRNA sequence
Length = 766
Score = 52.3 bits (110), Expect(2) = 7e-010
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + ++++E+ +I+ GNKW + PGRT++ +K +
Sbjct: 162 RCGKSCRLRWINYLRPDLKRGSFTEEEDELIIKLHSFVGNKWSLIAGRLPGRTDNEIKNY 341
Query: 553 W 555
W
Sbjct: 342 W 344
Score = 30.3 bits (61), Expect(2) = 7e-010
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ +ED+ L ++ HG +WR++
Sbjct: 60 KGAWTKQEDDRLIAHIRAHGEGSWRSL 140
>gb|CF388652.1|CF388652 RTDR2_4_A10.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_4_A10_A021 5', mRNA
sequence
Length = 760
Score = 54.6 bits (115), Expect(2) = 7e-010
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + ++++E+ +I+ V GNKW + PGRT++ +K +
Sbjct: 166 RCGKSCRLRWINYLRPDLKRGSFTEEEDELIIKLHSVVGNKWSLIAGRLPGRTDNEIKNY 345
Query: 553 W 555
W
Sbjct: 346 W 348
Score = 28.1 bits (56), Expect(2) = 7e-010
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1 / +1
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ EED L ++ +G +WR++
Sbjct: 64 KGAWTKEEDHRLIAYIRANGEGSWRSL 144
>gb|CV034082.1|CV034082 RTNACL1_38_B11.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_38_B11_A029 5', mRNA sequence
Length = 734
Score = 54.6 bits (115), Expect(2) = 7e-010
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + ++++E+ +I+ V GNKW + PGRT++ +K +
Sbjct: 143 RCGKSCRLRWINYLRPDLKRGSFTEEEDELIIKLHSVVGNKWSLIAGRLPGRTDNEIKNY 322
Query: 553 W 555
W
Sbjct: 323 W 325
Score = 28.1 bits (56), Expect(2) = 7e-010
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1 / +2
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ EED L ++ +G +WR++
Sbjct: 41 KGAWTKEEDHRLIAYIRANGEGSWRSL 121
>gb|DR178268.1|DR178268 RTMNUT1_10_C01.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_10_C01_A029 5', mRNA sequence
Length = 719
Score = 54.6 bits (115), Expect(2) = 7e-010
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + ++++E+ +I+ V GNKW + PGRT++ +K +
Sbjct: 130 RCGKSCRLRWINYLRPDLKRGSFTEEEDELIIKLHSVVGNKWSLIAGRLPGRTDNEIKNY 309
Query: 553 W 555
W
Sbjct: 310 W 312
Score = 28.1 bits (56), Expect(2) = 7e-010
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1 / +1
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ EED L ++ +G +WR++
Sbjct: 28 KGAWTKEEDHRLIAYIRANGEGSWRSL 108
>gb|DR071883.1|DR071883 RTDK1_22_E02.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_22_E02_A029 5', mRNA sequence
Length = 708
Score = 52.3 bits (110), Expect(2) = 7e-010
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + S+ EE +I GN+W ++ PGRT++ +K +
Sbjct: 313 RCGKSCRLRWTNYLRPDLKRGLLSESEEKLIIDLHAAIGNRWSRIAAQLPGRTDNEIKNY 492
Query: 553 W 555
W
Sbjct: 493 W 495
Score = 36.6 bits (75), Expect = 0.086
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -3 / -2
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSR 411
FQ L + VLPG C I HLFP C + SS D F +G +
Sbjct: 497 FQ*FLISLSVLPGNCAAIRDHLFPMAACRSMMSFSSDSDNNPRFKSGRK 351
Score = 30.3 bits (61), Expect(2) = 7e-010
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1 / +1
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNWRTI 354
KK W++EED L + HG WR +
Sbjct: 208 KKGPWTAEEDRKLVNFITLHGHGCWREV 291
>gb|DR020720.1|DR020720 STRS1_38_G12.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_38_G12_A034 5', mRNA sequence
Length = 688
Score = 53.2 bits (112), Expect(2) = 7e-010
Identities = 21/61 (34%), Positives = 33/61 (54%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + S EE ++R +++ GN+W + PGRT++ +K +
Sbjct: 159 RCGKSCRLRWTNYLRPDIKRGNISPDEEDLIVRMRRLLGNRWSLIAGRLPGRTDNEIKNY 338
Query: 553 W 555
W
Sbjct: 339 W 341
Score = 29.4 bits (59), Expect(2) = 7e-010
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +1 / +3
Query: 283 WSSEEDEALKQMVKRHGTKNWRTI 354
W+ +ED L + ++ HG WR +
Sbjct: 66 WTEKEDMILSEYIRLHGNGGWRNL 137
>gb|DR111427.1|DR111427 RTS1_17_F02.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_17_F02_A029 5', mRNA sequence
Length = 630
Score = 54.6 bits (115), Expect(2) = 7e-010
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + ++++E+ +I+ V GNKW + PGRT++ +K +
Sbjct: 152 RCGKSCRLRWINYLRPDLKRGSFTEEEDELIIKLHSVVGNKWSLIAGRLPGRTDNEIKNY 331
Query: 553 W 555
W
Sbjct: 332 W 334
Score = 28.1 bits (56), Expect(2) = 7e-010
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1 / +2
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ EED L ++ +G +WR++
Sbjct: 50 KGAWTKEEDHRLIAYIRANGEGSWRSL 130
>gb|DR168212.1|DR168212 RTPHOS1_23_H12.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_23_H12_A029 5', mRNA sequence
Length = 600
Score = 54.6 bits (115), Expect(2) = 7e-010
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + ++++E+ +I+ V GNKW + PGRT++ +K +
Sbjct: 144 RCGKSCRLRWINYLRPDLKRGSFTEEEDELIIKLHSVVGNKWSLIAGRLPGRTDNEIKNY 323
Query: 553 W 555
W
Sbjct: 324 W 326
Score = 28.1 bits (56), Expect(2) = 7e-010
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ EED L ++ +G +WR++
Sbjct: 42 KGAWTKEEDHRLIAYIRANGEGSWRSL 122
>gb|BF517838.1|BF517838 NXSI_027_G09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_027_G09 5' similar to Arabidopsis thaliana
sequence At4g38620 putative transcription factor (MYB4)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 494
Score = 52.8 bits (111), Expect(2) = 7e-010
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + S++E+ +I+ + GNKW + PGRT++ +K +
Sbjct: 234 RCGKSCRLRWINYLRPDLKRGNXSEEEDELIIKLHSLLGNKWSLIAXXLPGRTDNEIKNY 413
Query: 553 W 555
W
Sbjct: 414 W 416
Score = 29.9 bits (60), Expect(2) = 7e-010
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ EED+ L ++ HG WR++
Sbjct: 132 KGAWTKEEDDRLIAHIRTHGEGCWRSL 212
>gb|DR683171.1|DR683171 EST1073247 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAE88, mRNA sequence
Length = 846
Score = 59.5 bits (126), Expect(2) = 1e-009
Identities = 23/62 (37%), Positives = 34/62 (54%)
Frame = +1 / -3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + +S +EE +I Q N+W ++ KH PGRT+ +K +
Sbjct: 709 RCGKSCRLRWMNYLRPGIKRGNFSTEEENVIISLQARLNNRWAQIAKHLPGRTDTEIKNY 530
Query: 553 WK 558
W+
Sbjct: 529 WR 524
Score = 22.7 bits (44), Expect(2) = 1e-009
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +1 / -3
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNWRTIA 357
K+ W EED L + HG W +++
Sbjct: 814 KRGFWLPEEDMKLITYITTHGHGCWSSLS 728
>gb|DR117116.1|DR117116 RTMG1_4_G10.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_4_G10_A029 5', mRNA sequence
Length = 805
Score = 52.3 bits (110), Expect(2) = 1e-009
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + ++++E+ +I+ GNKW + PGRT++ +K +
Sbjct: 163 RCGKSCRLRWINYLRPDLKRGSFTEEEDELIIKLHSFVGNKWSLIAGRLPGRTDNEIKNY 342
Query: 553 W 555
W
Sbjct: 343 W 345
Score = 29.9 bits (60), Expect(2) = 1e-009
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1 / +1
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ +ED+ L ++ HG WR++
Sbjct: 61 KGAWTKQEDDRLIAHIRAHGEGGWRSL 141
>gb|DT631296.1|DT631296 EST1146227 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF723 3' end, mRNA sequence
Length = 795
Score = 59.5 bits (126), Expect(2) = 1e-009
Identities = 23/62 (37%), Positives = 34/62 (54%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + +S +EE +I Q N+W ++ KH PGRT+ +K +
Sbjct: 330 RCGKSCRLRWMNYLRPGIKRGNFSTEEENVIISLQARLNNRWAQIAKHLPGRTDTEIKNY 509
Query: 553 WK 558
W+
Sbjct: 510 WR 515
Score = 22.7 bits (44), Expect(2) = 1e-009
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +1 / +3
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNWRTIA 357
K+ W EED L + HG W +++
Sbjct: 225 KRGFWLPEEDMKLITYITTHGHGCWSSLS 311
>gb|DR683172.1|DR683172 EST1073248 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAE88 3' end, mRNA sequence
Length = 779
Score = 59.5 bits (126), Expect(2) = 1e-009
Identities = 23/62 (37%), Positives = 34/62 (54%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + +S +EE +I Q N+W ++ KH PGRT+ +K +
Sbjct: 322 RCGKSCRLRWMNYLRPGIKRGNFSTEEENVIISLQARLNNRWAQIAKHLPGRTDTEIKNY 501
Query: 553 WK 558
W+
Sbjct: 502 WR 507
Score = 22.7 bits (44), Expect(2) = 1e-009
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +1 / +1
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNWRTIA 357
K+ W EED L + HG W +++
Sbjct: 217 KRGFWLPEEDMKLITYITTHGHGCWSSLS 303
>gb|CX648418.1|CX648418 COLD1_28_B12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_28_B12_A029 5', mRNA sequence
Length = 868
Score = 54.6 bits (115), Expect(2) = 1e-009
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + ++++E+ +I+ V GNKW + PGRT++ +K +
Sbjct: 147 RCGKSCRLRWINYLRPDLKRGSFTEEEDELIIKLHSVVGNKWSLIAGRLPGRTDNEIKNY 326
Query: 553 W 555
W
Sbjct: 327 W 329
Score = 27.2 bits (54), Expect(2) = 1e-009
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +1 / +3
Query: 283 WSSEEDEALKQMVKRHGTKNWRTI 354
W+ EED L ++ +G +WR++
Sbjct: 54 WTKEEDHRLIAYIRANGEGSWRSL 125
>gb|CO368386.1|CO368386 RTK1_40_G08.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_40_G08_A029 3', mRNA sequence
Length = 894
Score = 51.4 bits (108), Expect(2) = 2e-009
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +1 / -2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + S EE +IR + GN+W + PGRT++ +K +
Sbjct: 683 RCGKSCRLRWLNYLRPDIKRGNISPDEEDLIIRLHGLLGNRWSLIAGRLPGRTDNEIKNY 504
Query: 553 W 555
W
Sbjct: 503 W 501
Score = 29.9 bits (60), Expect(2) = 2e-009
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1 / -2
Query: 259 SSKNKKHRWSSEEDEALKQMVKRHGTKNWRTIA 357
S + + W+ ED L + ++ HG+ W+ IA
Sbjct: 800 SKGHSRGAWTPIEDMILSEYIRIHGSDGWKNIA 702
>gb|DR094442.1|DR094442 STRR1_14_D03.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_14_D03_A033 5', mRNA sequence
Length = 887
Score = 52.3 bits (110), Expect(2) = 2e-009
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + S EE +IR + GN+W + PGRT++ +K +
Sbjct: 226 RRGKSCRLRWMNHLRPNVKRGHISADEEELIIRLHNLLGNRWSLIAGRVPGRTDNEVKNY 405
Query: 553 W 555
W
Sbjct: 406 W 408
Score = 29.0 bits (58), Expect(2) = 2e-009
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1 / +1
Query: 283 WSSEEDEALKQMVKRHGTKNWRTI 354
W+ EED LK ++ +G W T+
Sbjct: 133 WTPEEDRILKTYIEANGVGRWSTL 204
>gb|CO362169.1|CO362169 RTK1_1_F07.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_1_F07_A029 5', mRNA sequence
Length = 809
Score = 51.4 bits (108), Expect(2) = 2e-009
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + S EE +IR + GN+W + PGRT++ +K +
Sbjct: 194 RCGKSCRLRWLNYLRPDIKRGNISPDEEDLIIRLHGLLGNRWSLIAGRLPGRTDNEIKNY 373
Query: 553 W 555
W
Sbjct: 374 W 376
Score = 29.9 bits (60), Expect(2) = 2e-009
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1 / +2
Query: 259 SSKNKKHRWSSEEDEALKQMVKRHGTKNWRTIA 357
S + + W+ ED L + ++ HG+ W+ IA
Sbjct: 77 SKGHSRGAWTLMEDMILSEYIRIHGSDGWKNIA 175
>gb|DR069928.1|DR069928 RTDK1_10_F06.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_10_F06_A029 3', mRNA sequence
Length = 794
Score = 52.3 bits (110), Expect(2) = 2e-009
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +1 / -3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + S EE +IR + GN+W + PGRT++ +K +
Sbjct: 570 RRGKSCRLRWMNHLRPNVKRGHISADEEELIIRLHNLLGNRWSLIAGRVPGRTDNEVKNY 391
Query: 553 W 555
W
Sbjct: 390 W 388
Score = 29.0 bits (58), Expect(2) = 2e-009
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1 / -3
Query: 283 WSSEEDEALKQMVKRHGTKNWRTI 354
W+ EED LK ++ +G W T+
Sbjct: 663 WTPEEDRILKTYIEANGVGRWSTL 592
>gb|CF391868.1|CF391868 RTDR3_10_B04.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_10_B04_A022 5', mRNA
sequence
Length = 748
Score = 52.3 bits (110), Expect(2) = 2e-009
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + S EE +IR + GN+W + PGRT++ +K +
Sbjct: 206 RRGKSCRLRWMNHLRPNVKRGHISADEEELIIRLHNLLGNRWSLIAGRVPGRTDNEVKNY 385
Query: 553 W 555
W
Sbjct: 386 W 388
Score = 29.0 bits (58), Expect(2) = 2e-009
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1 / +2
Query: 283 WSSEEDEALKQMVKRHGTKNWRTI 354
W+ EED LK ++ +G W T+
Sbjct: 113 WTPEEDRILKTYIEANGVGRWSTL 184
>gb|DR072123.1|DR072123 RTDK1_24_F01.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_24_F01_A029 3', mRNA sequence
Length = 741
Score = 52.3 bits (110), Expect(2) = 2e-009
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +1 / -1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + S EE +IR + GN+W + PGRT++ +K +
Sbjct: 516 RRGKSCRLRWMNHLRPNVKRGHISADEEELIIRLHNLLGNRWSLIAGRVPGRTDNEVKNY 337
Query: 553 W 555
W
Sbjct: 336 W 334
Score = 29.0 bits (58), Expect(2) = 2e-009
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1 / -1
Query: 283 WSSEEDEALKQMVKRHGTKNWRTI 354
W+ EED LK ++ +G W T+
Sbjct: 609 WTPEEDRILKTYIEANGVGRWSTL 538
>gb|AW065064.1|AW065064 ST39B10 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST39B10, mRNA sequence
Length = 587
Score = 53.7 bits (113), Expect(2) = 2e-009
Identities = 22/62 (35%), Positives = 33/62 (53%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + S EE +IR ++ GN+W + PGRT++ +K +
Sbjct: 215 RCGKSCRLRWLNYLRPDIKRGDISPAEEELIIRLHRLLGNRWSLIAGRLPGRTDNEIKNY 394
Query: 553 WK 558
W+
Sbjct: 395 WE 400
Score = 27.7 bits (55), Expect(2) = 2e-009
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +1 / +2
Query: 283 WSSEEDEALKQMVKRHGTKNWRTI 354
W+ ED L + ++ HG WR++
Sbjct: 122 WTKTEDIILSEYIRIHGDGGWRSL 193
>gb|DR051127.1|DR051127 RTBOR1_27_G08.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_27_G08_A029 5', mRNA sequence
Length = 772
Score = 53.2 bits (112), Expect(2) = 2e-009
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + S EE +IR ++ GN+W + PGRT++ +K +
Sbjct: 179 RCGKSCRLRWMNYLRPDIKRGRISADEEDLIIRMHRLLGNRWSLIAGRLPGRTDNEIKNY 358
Query: 553 W 555
W
Sbjct: 359 W 361
Score = 27.7 bits (55), Expect(2) = 2e-009
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +1 / +2
Query: 283 WSSEEDEALKQMVKRHGTKNWRTI 354
W+ EED L ++ HG W+ +
Sbjct: 86 WTKEEDMILSTYIQTHGDGGWKIL 157
>gb|CF399612.1|CF399612 RTDS3_26_H01.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_26_H01_A022 5', mRNA sequence
Length = 387
Score = 52.3 bits (110), Expect(2) = 2e-009
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + S EE ++R ++ GN+W + PGRT++ LK +
Sbjct: 182 RCGKSCRLRWINYLCPDIKRGNISPDEEDLIVRLHRLLGNRWSLIAGRLPGRTDNELKNY 361
Query: 553 W 555
W
Sbjct: 362 W 364
Score = 28.1 bits (56), Expect(2) = 2e-009
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1 / +2
Query: 283 WSSEEDEALKQMVKRHGTKNWR 348
W+ +ED L + ++ HG WR
Sbjct: 89 WTQKEDTILSEYIRIHGDGKWR 154
>gb|DR058733.1|DR058733 RTNIT1_13_C07.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_13_C07_A029 5', mRNA sequence
Length = 592
Score = 53.2 bits (112), Expect(2) = 2e-009
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + S EE +IR ++ GN+W + PGRT++ +K +
Sbjct: 173 RCGKSCRLRWLNYLRPDIKRGDISPAEEELIIRLHRLLGNRWSLIAGRLPGRTDNEIKNY 352
Query: 553 W 555
W
Sbjct: 353 W 355
Score = 27.7 bits (55), Expect(2) = 2e-009
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +1 / +2
Query: 283 WSSEEDEALKQMVKRHGTKNWRTI 354
W+ ED L + ++ HG WR++
Sbjct: 80 WTKTEDIILSEYIRIHGDGGWRSL 151
>gb|AW065119.1|AW065119 ST39H05 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST39H05, mRNA sequence
Length = 586
Score = 53.2 bits (112), Expect(2) = 2e-009
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + S EE +IR ++ GN+W + PGRT++ +K +
Sbjct: 216 RCGKSCRLRWLNYLRPDIKRGDVSPAEEELIIRLHRLLGNRWSLIAGRLPGRTDNEIKNY 395
Query: 553 W 555
W
Sbjct: 396 W 398
Score = 27.7 bits (55), Expect(2) = 2e-009
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +1 / +3
Query: 283 WSSEEDEALKQMVKRHGTKNWRTI 354
W+ ED L + ++ HG WR++
Sbjct: 123 WTKTEDIILSEYIRIHGDGGWRSL 194
>gb|CF395899.1|CF395899 RTDS2_19_G06.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_19_G06_A021 5', mRNA sequence
Length = 586
Score = 51.0 bits (107), Expect(2) = 2e-009
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S++E+ +I+ + GNKW + GRT++ +K +
Sbjct: 114 RCGKSCRLRWINYLRPDLKRGNFSEEEDELIIKLHSLLGNKWSLIAARMAGRTDNEIKNY 293
Query: 553 W 555
W
Sbjct: 294 W 296
Score = 29.9 bits (60), Expect(2) = 2e-009
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1 / +3
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNWR 348
KK W+ +ED L ++ HG WR
Sbjct: 9 KKGAWTQQEDARLVAYIQAHGEGGWR 86
>gb|DT639133.1|DT639133 EST1154064 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHN42 3' end, mRNA sequence
Length = 857
Score = 52.8 bits (111), Expect(2) = 3e-009
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + S EE +IR + GN+W + PGRT++ +K +
Sbjct: 243 RCGKSCRLRWLNYLRPDIKRGNISPDEEELIIRLHHLLGNRWSLIAGRLPGRTDNEIKNY 422
Query: 553 W 555
W
Sbjct: 423 W 425
Score = 27.7 bits (55), Expect(2) = 3e-009
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +1 / +3
Query: 283 WSSEEDEALKQMVKRHGTKNWRTI 354
W+ ED L + ++ HG WR +
Sbjct: 150 WTKREDMILSEYIRIHGDGGWRNM 221
>gb|DR694940.1|DR694940 EST1085033 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEI64 3' end, mRNA sequence
Length = 848
Score = 52.8 bits (111), Expect(2) = 3e-009
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + S EE +IR + GN+W + PGRT++ +K +
Sbjct: 235 RCGKSCRLRWLNYLRPDIKRGNISPDEEELIIRLHHLLGNRWSLIAGRLPGRTDNEIKNY 414
Query: 553 W 555
W
Sbjct: 415 W 417
Score = 27.7 bits (55), Expect(2) = 3e-009
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +1 / +1
Query: 283 WSSEEDEALKQMVKRHGTKNWRTI 354
W+ ED L + ++ HG WR +
Sbjct: 142 WTKREDMILSEYIRIHGDGGWRNM 213
>gb|DR111301.1|DR111301 RTS1_16_F03.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_16_F03_A029 5', mRNA sequence
Length = 729
Score = 50.1 bits (105), Expect(2) = 3e-009
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + ++++E+ +I+ V GNKW + GRT++ +K +
Sbjct: 155 RCGKSCRLRWINYLRPDLKRGGFTEEEDELIIKLHAVLGNKWSLIAGRLAGRTDNEIKNY 334
Query: 553 W 555
W
Sbjct: 335 W 337
Score = 30.3 bits (61), Expect(2) = 3e-009
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1 / +2
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ EED L ++ HG WR++
Sbjct: 53 KGAWTKEEDRRLIAHIRAHGEGGWRSL 133
>gb|DR167401.1|DR167401 RTPHOS1_18_C09.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_18_C09_A029 5', mRNA sequence
Length = 850
Score = 53.2 bits (112), Expect(2) = 4e-009
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + S EE +IR ++ GN+W + PGRT++ +K +
Sbjct: 177 RCGKSCRLRWMNYLRPDIKRGRISADEEDLIIRMHRLLGNRWSLIAGRLPGRTDNEIKNY 356
Query: 553 W 555
W
Sbjct: 357 W 359
Score = 26.8 bits (53), Expect(2) = 4e-009
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +1 / +3
Query: 283 WSSEEDEALKQMVKRHGTKNWRTI 354
W+ EED L ++ HG W+ +
Sbjct: 84 WTKEEDMILSTYIQIHGDGGWKIL 155
>gb|DR164052.1|DR164052 RTFE1_46_B11.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_46_B11_A029 5', mRNA sequence
Length = 834
Score = 51.9 bits (109), Expect(2) = 4e-009
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + ++++E+ +I+ V GNKW + PGR ++ +K +
Sbjct: 183 RCGKSCRLRWINYLRPDLKRGSFTEEEDELIIKLHSVVGNKWSLIAGRLPGRMDNEIKNY 362
Query: 553 W 555
W
Sbjct: 363 W 365
Score = 28.1 bits (56), Expect(2) = 4e-009
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ EED L ++ +G +WR++
Sbjct: 81 KGAWTKEEDHRLIAYIRANGEGSWRSL 161
>gb|DR384689.1|DR384689 RTHG1_3_H06.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_3_H06_A029 5', mRNA sequence
Length = 820
Score = 53.2 bits (112), Expect(2) = 4e-009
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + S EE +IR ++ GN+W + PGRT++ +K H
Sbjct: 187 RCGKSCRLRWINYLRPDVKRGNISIDEEDVIIRMHRLLGNRWSLIAGRLPGRTDNEIKNH 366
Query: 553 W 555
W
Sbjct: 367 W 369
Score = 26.8 bits (53), Expect(2) = 4e-009
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +1 / +1
Query: 283 WSSEEDEALKQMVKRHGTKNWRTI 354
W EED L ++ HG WR +
Sbjct: 94 WKPEEDMILCDYIRIHGPGRWRDL 165
>gb|CV034623.1|CV034623 RTNACL1_10_A11.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_10_A11_A029 5', mRNA sequence
Length = 746
Score = 51.0 bits (107), Expect(2) = 4e-009
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L + + +S++E+ +IR + GNKW + GRT++ +K H
Sbjct: 133 RCGKSCRQRWINYLRQDLKRCNFSEEEDELIIRLHSLLGNKWSLIAGRLTGRTDNEIKNH 312
Query: 553 W 555
W
Sbjct: 313 W 315
Score = 48.3 bits (101), Expect = 4e-005
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +1 / +1
Query: 415 DPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
DP + + +S++E+ +IR + GNKW + PGR+ + +K HW
Sbjct: 355 DPHLKRGNFSEEEDELIIRLHSLLGNKWSLIAGRLPGRSGNEIKNHW 495
Score = 29.0 bits (58), Expect(2) = 4e-009
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +1 / +1
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K W+ +ED L ++ HG WR++
Sbjct: 31 KGAWTQQEDTRLVAHIRAHGEGGWRSL 111
>gb|DR384384.1|DR384384 RTHG1_1_H06.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_1_H06_A029 5', mRNA sequence
Length = 739
Score = 53.2 bits (112), Expect(2) = 4e-009
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + S EE +IR ++ GN+W + PGRT++ +K H
Sbjct: 187 RCGKSCRLRWINYLRPDVKRGNISIDEEDVIIRMHRLLGNRWSLIAGRLPGRTDNEIKNH 366
Query: 553 W 555
W
Sbjct: 367 W 369
Score = 26.8 bits (53), Expect(2) = 4e-009
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +1 / +1
Query: 283 WSSEEDEALKQMVKRHGTKNWRTI 354
W EED L ++ HG WR +
Sbjct: 94 WKPEEDMILCDYIRIHGPGRWRDL 165
>gb|DR098778.1|DR098778 STRR1_47_G01.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_47_G01_A033 5', mRNA sequence
Length = 676
Score = 53.2 bits (112), Expect(2) = 4e-009
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + S EE +IR ++ GN+W + PGRT++ +K +
Sbjct: 143 RCGKSCRLRWLNYLRPDIKRGDISPAEEELIIRLHRLLGNRWSLIAGRLPGRTDNEIKNY 322
Query: 553 W 555
W
Sbjct: 323 W 325
Score = 26.8 bits (53), Expect(2) = 4e-009
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +1 / +2
Query: 283 WSSEEDEALKQMVKRHGTKNWRTI 354
W+ ED L + ++ HG WR +
Sbjct: 50 WTKTEDIILSEYIRIHGDGGWRIL 121
>gb|CF667523.1|CF667523 RTCNT1_30_H07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_30_H07_A029 5', mRNA sequence
Length = 667
Score = 48.3 bits (101), Expect(2) = 4e-009
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + +EE ++R ++ GN+W + PGRT++ +K +
Sbjct: 208 RCGKSCRLRWMNYLRPDVKHGHILPEEEDLILRLHRLLGNRWSLIAGRMPGRTDNEVKNY 387
Query: 553 W 555
W
Sbjct: 388 W 390
Score = 31.7 bits (64), Expect(2) = 4e-009
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1 / +1
Query: 283 WSSEEDEALKQMVKRHGTKNWRTI 354
W+ EED L ++ HG WRT+
Sbjct: 115 WTPEEDLCLSNYIESHGEGGWRTL 186
>gb|CF395727.1|CF395727 RTDS2_16_B07.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_16_B07_A021 5', mRNA sequence
Length = 782
Score = 51.4 bits (108), Expect(2) = 6e-009
Identities = 21/61 (34%), Positives = 32/61 (52%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + S EE ++R ++ GN+W + PGRT++ +K +
Sbjct: 208 RCGKSCRLRWINYLCPDIKRGNISPDEEDLIVRLHRLLGNRWSLIAGRLPGRTDNEIKNY 387
Query: 553 W 555
W
Sbjct: 388 W 390
Score = 28.1 bits (56), Expect(2) = 6e-009
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1 / +1
Query: 283 WSSEEDEALKQMVKRHGTKNWR 348
W+ +ED L + ++ HG WR
Sbjct: 115 WTQKEDTILSEYIRIHGDGKWR 180
>gb|CF397272.1|CF397272 RTDS3_2_C01.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_2_C01_A022 5', mRNA sequence
Length = 598
Score = 51.4 bits (108), Expect(2) = 6e-009
Identities = 21/61 (34%), Positives = 32/61 (52%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + S EE ++R ++ GN+W + PGRT++ +K +
Sbjct: 174 RCGKSCRLRWINYLCPDIKRGNISPDEEDLIVRLHRLLGNRWSLIAGRLPGRTDNEIKNY 353
Query: 553 W 555
W
Sbjct: 354 W 356
Score = 28.1 bits (56), Expect(2) = 6e-009
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1 / +3
Query: 283 WSSEEDEALKQMVKRHGTKNWR 348
W+ +ED L + ++ HG WR
Sbjct: 81 WTQKEDTILSEYIRIHGDGKWR 146
>gb|DR014928.1|DR014928 HEAT1_52_A11.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_52_A11_A029 5', mRNA sequence
Length = 854
Score = 51.4 bits (108), Expect(2) = 8e-009
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S+ E+ +++ + GNKW + PGRT++ +K +
Sbjct: 106 RCGKSCRLRWINYLRPDLKRGGFSEDEDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNY 285
Query: 553 W 555
W
Sbjct: 286 W 288
Score = 35.3 bits (72), Expect = 0.22
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = -3 / -1
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHL 396
FQ L + V PGK I HLFP C+ SSS ++ F +G R + HL
Sbjct: 290 FQ*FLISLSVRPGKRPAIRDHLFPRRACSLRIRSSSSSEKPPRFRSGRR*FIHL 129
Score = 27.7 bits (55), Expect(2) = 8e-009
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1 / +1
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNWRTI 354
K+ EED+ L Q ++ HG WR++
Sbjct: 1 KQGSLDQEEDDRLTQYIQAHGEGCWRSL 84
>gb|CF668816.1|CF668816 RTCNT1_38_G11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_38_G11_A029 5', mRNA sequence
Length = 814
Score = 50.5 bits (106), Expect(2) = 8e-009
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + EE +IR ++ GN+W + PGRT++ +K +
Sbjct: 146 RCGKSCRLRWLNYLRPDIKRGNICPAEEELIIRLHRLLGNRWSLIAGRLPGRTDNEIKNY 325
Query: 553 W 555
W
Sbjct: 326 W 328
Score = 28.6 bits (57), Expect(2) = 8e-009
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1 / +2
Query: 283 WSSEEDEALKQMVKRHGTKNWRTI 354
W+ ED L + V+ HG WR +
Sbjct: 53 WTKREDMILSEYVRIHGDGGWRNL 124
>gb|DR167893.1|DR167893 RTPHOS1_21_G02.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_21_G02_A029 5', mRNA sequence
Length = 635
Score = 60.4 bits (128), Expect = 9e-009
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +1 / +2
Query: 385 SCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
SC RW L P I + +S E++ +I + GN+W + H PGRT++ +K HW
Sbjct: 14 SCRLRWTNYLRPGIKRGNFSIHEDIVIIHLHAILGNRWSAIASHLPGRTDNEIKNHW 184
>gb|CF475091.1|CF475091 RTWW2_5_F10.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_5_F10_A021 5', mRNA sequence
Length = 707
Score = 34.4 bits (70), Expect(3) = 1e-008
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1 / +2
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNWRTI 354
KK W+ +ED+ L + HG NWR +
Sbjct: 47 KKGPWTPDEDKLLVDYINNHGHSNWRAL 130
Score = 33.5 bits (68), Expect(3) = 1e-008
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNK 495
R SC RW L P I + +S +EE ++I+ ++ GN+
Sbjct: 152 RCGKSCRLRWTNYLRPNIKRGNFSPEEEDQIIKLHELIGNR 274
Score = 29.4 bits (59), Expect(3) = 1e-008
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1 / +1
Query: 493 KWCKMVKHFPGRTNDALKEHW 555
+W + H PGRT++ +K W
Sbjct: 430 RWSTIASHLPGRTDNEIKNVW 492
>gb|BQ634727.1|BQ634727 NXRV072_E09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV072_E09 5' similar to Arabidopsis thaliana
sequence At1g09540 putative transcription factor (MYB61)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 742
Score = 49.6 bits (104), Expect(2) = 1e-008
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S E ++ V GN+W ++ H PG T++ +K
Sbjct: 467 RCGKSCRLRWINYLRPDLKRGTFSPXXENLIVELHSVLGNRWSQIATHLPGXTDNEIKNL 646
Query: 553 W 555
W
Sbjct: 647 W 649
Score = 33.9 bits (69), Expect = 0.58
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -3 / -2
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCA 471
FQ L + VLPG+C+ I HLFP T C+
Sbjct: 651 FQRFLISLSVLPGRCVAI*DHLFPRTECS 565
Score = 29.0 bits (58), Expect(2) = 1e-008
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1 / +2
Query: 265 KNKKHRWSSEEDEALKQMVKRHGTKNWRTI 354
K +K WS EEDE L + + ++G W +
Sbjct: 356 KLRKGLWSPEEDEKLVRHITKYGHGCWSAV 445
>gb|AW064634.1|AW064634 ST33H05 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST33H05, mRNA sequence
Length = 584
Score = 42.9 bits (89), Expect(2) = 1e-008
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S+ E+ +++ + GNKW + RT++ +K +
Sbjct: 245 RCGKSCRLRWINYLRPDLKRGFFSEDEDDLILKLHALLGNKWSLIAGRLXRRTDNEIKNY 424
Query: 553 W 555
W
Sbjct: 425 W 427
Score = 35.3 bits (72), Expect(2) = 1e-008
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1 / +2
Query: 256 SSSKNKKHRWSSEEDEALKQMVKRHGTKNWRTI 354
S+ K W+ EED+ L Q +K HG WR++
Sbjct: 125 SNGDRNKGAWTKEEDDRLIQYIKVHGEGCWRSL 223
>gb|CO165016.1|CO165016 FLD1_51_F09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_51_F09_A029 5', mRNA sequence
Length = 694
Score = 59.5 bits (126), Expect = 2e-008
Identities = 20/60 (33%), Positives = 34/60 (56%)
Frame = +1 / +2
Query: 376 NANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ SC RW L P + P++ E+ +++A +GN+W + + PGRT+ A+K HW
Sbjct: 5 SGKSCRLRWCNQLSPQVEHRPFTPAEDAAILQAHAQHGNQWATIARALPGRTDYAIKNHW 184
>gb|CO164542.1|CO164542 FLD1_48_E08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_48_E08_A029 5', mRNA sequence
Length = 862
Score = 58.6 bits (124), Expect = 3e-008
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + +S +EE +I Q+ GN+W + H PGRT++ +K
Sbjct: 22 RCGKSCRLRWTNYLRPDIKRGNFSLKEEQTIIHLHQILGNRWSAISSHLPGRTDNEIKNV 201
Query: 553 W 555
W
Sbjct: 202 W 204
Score = 32.6 bits (66), Expect = 1.5
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -3 / -3
Query: 530 VLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHLER 390
VLPG+C I H FP C I + SS + F++G R + H R
Sbjct: 179 VLPGRCEEIADHRFPRI*CR*IIVCSSLRLKFPRFMSGLR*FVHRRR 39
>gb|DN463162.1|DN463162 EST958961 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIIV37 5' end, mRNA sequence
Length = 943
Score = 58.6 bits (124), Expect = 3e-008
Identities = 19/53 (35%), Positives = 32/53 (60%)
Frame = +1 / +1
Query: 397 RWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
RW L P + P++ +E+ ++RA +GNKW + + GRT++A+K HW
Sbjct: 1 RWCNQLSPQVEHRPFTPEEDATIVRAHAQHGNKWATIARMLSGRTDNAIKNHW 159
>gb|CO163969.1|CO163969 FLD1_45_A11.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_45_A11_A029 3', mRNA sequence
Length = 888
Score = 51.0 bits (107), Expect(2) = 4e-008
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1 / -3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S++E+ +I+ + G+KW + PGRT + +K +
Sbjct: 712 RCGKSCRLRWINYLRPNLKRGNFSEEEDDLIIKLHNLLGDKWSLIAGRLPGRTENEIKNY 533
Query: 553 W 555
W
Sbjct: 532 W 530
Score = 25.9 bits (51), Expect(2) = 4e-008
Identities = 7/24 (29%), Positives = 13/24 (54%)
Frame = +1 / -3
Query: 283 WSSEEDEALKQMVKRHGTKNWRTI 354
W+ +ED L ++ HG W ++
Sbjct: 805 WTQQEDARLIAYIRAHGEGGWHSL 734
>gb|CF402623.1|CF402623 RTWW1_21_B11.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_21_B11_A015 5', mRNA sequence
Length = 755
Score = 54.6 bits (115), Expect(2) = 4e-008
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + ++++E+ +I+ V GNKW + PGRT++ +K +
Sbjct: 112 RCGKSCRLRWINYLRPDLKRGSFTEEEDELIIKLHSVVGNKWSLIAGRLPGRTDNEIKNY 291
Query: 553 W 555
W
Sbjct: 292 W 294
Score = 22.3 bits (43), Expect(2) = 4e-008
Identities = 7/23 (30%), Positives = 14/23 (60%)
Frame = +1 / +1
Query: 286 SSEEDEALKQMVKRHGTKNWRTI 354
+ EED L ++ +G +WR++
Sbjct: 22 TKEEDHRLIAYIRANGEGSWRSL 90
>gb|CF389081.1|CF389081 RTDR2_13_A10.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_13_A10_A021 5', mRNA
sequence
Length = 743
Score = 54.6 bits (115), Expect(2) = 4e-008
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + ++++E+ +I+ V GNKW + PGRT++ +K +
Sbjct: 92 RCGKSCRLRWINYLRPDLKRGSFTEEEDELIIKLHSVVGNKWSLIAGRLPGRTDNEIKNY 271
Query: 553 W 555
W
Sbjct: 272 W 274
Score = 22.3 bits (43), Expect(2) = 4e-008
Identities = 7/23 (30%), Positives = 14/23 (60%)
Frame = +1 / +2
Query: 286 SSEEDEALKQMVKRHGTKNWRTI 354
+ EED L ++ +G +WR++
Sbjct: 2 TKEEDHRLIAYIRANGEGSWRSL 70
>gb|CF391408.1|CF391408 RTDR3_1_E10.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_1_E10_A022 5', mRNA
sequence
Length = 818
Score = 48.3 bits (101), Expect(2) = 5e-008
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + S EE ++R ++ GN+W + GRT++ +K +
Sbjct: 175 RCGKSCRLRWINYLRPDIKRGNISPDEEDLIVRLHRLLGNRWSLIAGRLAGRTDNEIKNY 354
Query: 553 W 555
W
Sbjct: 355 W 357
Score = 28.1 bits (56), Expect(2) = 5e-008
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1 / +1
Query: 283 WSSEEDEALKQMVKRHGTKNWR 348
W+ +ED L + ++ HG WR
Sbjct: 82 WTQKEDTILSEYIRIHGDGKWR 147
>gb|DT633531.1|DT633531 EST1148462 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFV86 3' end, mRNA sequence
Length = 817
Score = 43.8 bits (91), Expect(2) = 5e-008
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I +S++E+ + G++W + PGRT++ +K +
Sbjct: 306 RCGKSCRLRWLNYLRPDIKHGDFSEEEDDIICTLYTSIGSRWSIIAAQLPGRTDNDIKNY 485
Query: 553 W 555
W
Sbjct: 486 W 488
Score = 32.6 bits (66), Expect(2) = 5e-008
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1 / +3
Query: 271 KKHRWSSEEDEALKQMVKRHGT 336
K+ WS EED LK V++HGT
Sbjct: 198 KRGPWSPEEDTILKNFVEKHGT 263
>gb|CO368639.1|CO368639 RTK1_41_H02.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_41_H02_A029 5', mRNA sequence
Length = 782
Score = 43.8 bits (91), Expect(2) = 5e-008
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I +S++E+ + G++W + PGRT++ +K +
Sbjct: 553 RCGKSCRLRWLNYLRPDIKHGDFSEEEDDIICTLYTSIGSRWSIIAAQLPGRTDNDIKNY 732
Query: 553 W 555
W
Sbjct: 733 W 735
Score = 32.6 bits (66), Expect(2) = 5e-008
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1 / +1
Query: 271 KKHRWSSEEDEALKQMVKRHGT 336
K+ WS EED LK V++HGT
Sbjct: 445 KRGPWSPEEDTILKNFVEKHGT 510
>gb|DR686108.1|DR686108 EST1076186 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABC41 3' end, mRNA sequence
Length = 752
Score = 43.8 bits (91), Expect(2) = 5e-008
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I +S++E+ + G++W + PGRT++ +K +
Sbjct: 298 RCGKSCRLRWLNYLRPDIKHGDFSEEEDDIICTLYTSIGSRWSIIAAQLPGRTDNDIKNY 477
Query: 553 W 555
W
Sbjct: 478 W 480
Score = 32.6 bits (66), Expect(2) = 5e-008
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1 / +1
Query: 271 KKHRWSSEEDEALKQMVKRHGT 336
K+ WS EED LK V++HGT
Sbjct: 190 KRGPWSPEEDTILKNFVEKHGT 255
>gb|DR744906.1|DR744906 RTCU1_25_E06.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_25_E06_A029 5', mRNA sequence
Length = 691
Score = 43.8 bits (91), Expect(2) = 5e-008
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I +S++E+ + G++W + PGRT++ +K +
Sbjct: 267 RCGKSCRLRWLNYLRPDIKHGDFSEEEDDIICTLYTSIGSRWSIIAAQLPGRTDNDIKNY 446
Query: 553 W 555
W
Sbjct: 447 W 449
Score = 32.6 bits (66), Expect(2) = 5e-008
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1 / +3
Query: 271 KKHRWSSEEDEALKQMVKRHGT 336
K+ WS EED LK V++HGT
Sbjct: 159 KRGPWSPEEDTILKNFVEKHGT 224
>gb|CF394327.1|CF394327 RTDS2_4_B08.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_4_B08_A021 5', mRNA sequence
Length = 493
Score = 48.3 bits (101), Expect(2) = 5e-008
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + S EE ++R ++ GN+W + GRT++ +K +
Sbjct: 189 RCGKSCRLRWINYLRPDIKRGNISPDEEDLIVRLHRLLGNRWSLIAGRLAGRTDNEIKNY 368
Query: 553 W 555
W
Sbjct: 369 W 371
Score = 28.1 bits (56), Expect(2) = 5e-008
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1 / +3
Query: 283 WSSEEDEALKQMVKRHGTKNWR 348
W+ +ED L + ++ HG WR
Sbjct: 96 WTQKEDTILSEYIRIHGDGKWR 161
>gb|DR015810.1|DR015810 STRS1_5_F07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_F07_A034 5', mRNA sequence
Length = 829
Score = 42.9 bits (89), Expect(2) = 7e-008
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I +S+ E+ + G++W + PGRT++ +K +
Sbjct: 147 RCGKSCRLRWLNYLRPDIRHGGFSEDEDNIICSLYASIGSRWSIIAAQLPGRTDNDIKNY 326
Query: 553 W 555
W
Sbjct: 327 W 329
Score = 33.0 bits (67), Expect(2) = 7e-008
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1 / +3
Query: 271 KKHRWSSEEDEALKQMVKRHGT 336
KK WS EED LK +++HGT
Sbjct: 39 KKGSWSPEEDAKLKAFIEQHGT 104
>gb|DT633408.1|DT633408 EST1148339 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFU59 3' end, mRNA sequence
Length = 690
Score = 45.6 bits (95), Expect(2) = 7e-008
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + +S++E+ + G++W + PGRT++ +K H
Sbjct: 220 RCGKSCRLRWLNYLRPNLKHGGFSEEEDNMIYSLFLGIGSRWSMIAAQLPGRTDNDIKNH 399
Query: 553 W 555
W
Sbjct: 400 W 402
Score = 30.3 bits (61), Expect(2) = 7e-008
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1 / +1
Query: 271 KKHRWSSEEDEALKQMVKRHGT 336
K+ WS EED LK+ ++++GT
Sbjct: 112 KRGPWSPEEDSKLKEYIEKYGT 177
>gb|DR686505.1|DR686505 EST1076583 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABG77 3' end, mRNA sequence
Length = 681
Score = 45.6 bits (95), Expect(2) = 7e-008
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + +S++E+ + G++W + PGRT++ +K H
Sbjct: 212 RCGKSCRLRWLNYLRPNLKHGGFSEEEDNMIYSLFLGIGSRWSMIAAQLPGRTDNDIKNH 391
Query: 553 W 555
W
Sbjct: 392 W 394
Score = 30.3 bits (61), Expect(2) = 7e-008
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1 / +2
Query: 271 KKHRWSSEEDEALKQMVKRHGT 336
K+ WS EED LK+ ++++GT
Sbjct: 104 KRGPWSPEEDSKLKEYIEKYGT 169
>gb|CO162411.1|CO162411 FLD1_35_D02.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_35_D02_A029 3', mRNA sequence
Length = 717
Score = 56.8 bits (120), Expect = 1e-007
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = +1 / -3
Query: 367 PGRNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALK 546
P R SC RW L P + + ++++E+ +I+ V GNKW + PGRT++ +K
Sbjct: 670 PPRCGKSCRLRWINYLRPDLKRGSFTEEEDELIIKLHSVVGNKWSLIAGRLPGRTDNEIK 491
Query: 547 EHW 555
+W
Sbjct: 490 NYW 482
>gb|CO361388.1|CO361388 NDL2_4_C06.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_4_C06_A029 5', mRNA sequence
Length = 840
Score = 55.9 bits (118), Expect = 2e-007
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R+ SC RW L P I + S EE +IR ++ GN+W + PGRT++ +K +
Sbjct: 113 RSGKSCRLRWLNYLRPGIKRGNISPDEEELIIRLHRLLGNRWSLIAGRLPGRTDNEIKNY 292
Query: 553 W 555
W
Sbjct: 293 W 295
>gb|CF663743.1|CF663743 RTCNT1_4_H05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_4_H05_A029 5', mRNA sequence
Length = 705
Score = 55.0 bits (116), Expect = 4e-007
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +1 / +2
Query: 412 LDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
L P + P++ E+ +++A +GNKW + + PGRT++A+K HW
Sbjct: 14 LSPQVEHRPFTPSEDAAILQAHAQHGNKWATIARALPGRTDNAIKNHW 157
Score = 31.7 bits (64), Expect = 4.1
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +1 / +2
Query: 262 SKNKKHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLL 414
S +HR + ++A W TIA A+PGR N+ + W L
Sbjct: 17 SPQVEHRPFTPSEDAAILQAHAQHGNKWATIARALPGRTDNAIKNHWNSTL 169
>gb|CF385274.1|CF385274 RTDR1_2_D01.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_2_D01_A015 5', mRNA
sequence
Length = 703
Score = 54.6 bits (115), Expect = 5e-007
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + ++++E+ +I+ V GNKW + PGRT++ +K +
Sbjct: 38 RCGKSCRLRWINYLRPDLKRGSFTEEEDELIIKLHSVVGNKWSLIAGRLPGRTDNEIKNY 217
Query: 553 W 555
W
Sbjct: 218 W 220
>gb|CF400460.1|CF400460 RTWW1_5_H12.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_5_H12_A015 5', mRNA sequence
Length = 747
Score = 54.6 bits (115), Expect = 5e-007
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + ++++E+ +I+ V GNKW + PGRT++ +K +
Sbjct: 100 RCGKSCRLRWINYLRPDLKRGSFTEEEDELIIKLHSVVGNKWSLIAGRLPGRTDNEIKNY 279
Query: 553 W 555
W
Sbjct: 280 W 282
>gb|DR179654.1|DR179654 RTMNUT1_23_B05.g2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_23_B05_A029 5', mRNA sequence
Length = 685
Score = 54.6 bits (115), Expect = 5e-007
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + ++++E+ +I+ V GNKW + PGRT++ +K +
Sbjct: 54 RCGKSCRLRWINYLRPDLKRGSFTEEEDELIIKLHSVVGNKWSLIAGRLPGRTDNEIKNY 233
Query: 553 W 555
W
Sbjct: 234 W 236
>gb|CF401126.1|CF401126 RTWW1_10_H02.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_10_H02_A015 3', mRNA sequence
Length = 620
Score = 54.1 bits (114), Expect = 7e-007
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1 / -2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S++E+ +I+ + GNKW + PGRT++ +K +
Sbjct: 466 RCGKSCRLRWINYLRPDLKRGNFSEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNY 287
Query: 553 W 555
W
Sbjct: 286 W 284
>gb|DR117421.1|DR117421 RTMG1_6_G12.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_6_G12_A029 5', mRNA sequence
Length = 872
Score = 54.1 bits (114), Expect = 7e-007
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S++E+ +I+ + GNKW + PGRT++ +K +
Sbjct: 46 RCGKSCRLRWINYLRPDLKRGNFSEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNY 225
Query: 553 W 555
W
Sbjct: 226 W 228
>gb|CF396536.1|CF396536 RTDS2_22_H07.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_22_H07_A021 5', mRNA sequence
Length = 777
Score = 43.3 bits (90), Expect(2) = 1e-006
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I +S++E+ + G++W + PGRT++ +K +
Sbjct: 97 RCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICTLYLSIGSRWSIIAAQLPGRTDNDIKNY 276
Query: 553 W 555
W
Sbjct: 277 W 279
Score = 28.6 bits (57), Expect(2) = 1e-006
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1 / +1
Query: 283 WSSEEDEALKQMVKRHGT 336
WS EED LK+ ++++GT
Sbjct: 1 WSPEEDSELKKYIEKYGT 54
>gb|CN852309.1|CN852309 Pi148-1 Salicylate-treated slash pine seedlings Pinus elliottii
cDNA, mRNA sequence
Length = 270
Score = 52.3 bits (110), Expect(2) = 1e-006
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + ++++E+ +I+ GNKW + PGRT++ +K +
Sbjct: 67 RCGKSCRLRWINYLRPDLKRGSFTEEEDELIIKLHSFVGNKWSLIAGRLPGRTDNEIKNY 246
Query: 553 W 555
W
Sbjct: 247 W 249
Score = 18.2 bits (34), Expect(2) = 1e-006
Identities = 4/12 (33%), Positives = 8/12 (66%)
Frame = +1 / +1
Query: 319 VKRHGTKNWRTI 354
++ HG WR++
Sbjct: 10 IRAHGEGGWRSL 45
>gb|CO170303.1|CO170303 NDL1_13_D05.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_13_D05_A029 3', mRNA sequence
Length = 798
Score = 53.2 bits (112), Expect = 1e-006
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +1 / -1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + S EE +IR ++ GN+W + PGRT++ +K +
Sbjct: 618 RCGKSCRLRWLNYLRPDIKRGDISPAEEELIIRLHRLLGNRWSLIAGRLPGRTDNEIKNY 439
Query: 553 W 555
W
Sbjct: 438 W 436
>gb|DR020641.1|DR020641 STRS1_38_G12.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_38_G12_A034 3', mRNA sequence
Length = 799
Score = 53.2 bits (112), Expect = 1e-006
Identities = 21/61 (34%), Positives = 33/61 (54%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P I + S EE ++R +++ GN+W + PGRT++ +K +
Sbjct: 5 RCGKSCRLRWTNYLRPDIKRGNISPDEEDLIVRMRRLLGNRWSLIAGRLPGRTDNEIKNY 184
Query: 553 W 555
W
Sbjct: 185 W 187
>gb|DR096412.1|DR096412 STRR1_27_G02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_27_G02_A033 5', mRNA sequence
Length = 778
Score = 53.2 bits (112), Expect = 1e-006
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +1 / -2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R+ SC RW L P I S +EE +IR ++ GN+W + PGRT +K +
Sbjct: 669 RSGKSCRLRWMDYLRPDIKSGNISPEEEELIIRMHRLLGNRWSLIAGRLPGRTGREIKNY 490
Query: 553 W 555
W
Sbjct: 489 W 487
>gb|DR109956.1|DR109956 RTS1_1_B02.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_1_B02_A029 3', mRNA sequence
Length = 729
Score = 53.2 bits (112), Expect = 1e-006
Identities = 16/54 (29%), Positives = 34/54 (62%)
Frame = +1 / -2
Query: 397 RWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHWK 558
RW L P + + + +E+L ++ +++GN+W K+ + PGRT++ +K +W+
Sbjct: 722 RWLNYLRPDVKRGNITPEEQLLILELHRLWGNRWSKIARQLPGRTDNEIKNYWR 561
>gb|DR101609.1|DR101609 STRR1_74_C02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_74_C02_A033 5', mRNA sequence
Length = 741
Score = 52.8 bits (111), Expect = 2e-006
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SCL RW L P + + ++++E+ +I+ V GNKW + GRT++ +K +
Sbjct: 51 RCGKSCLLRWINYLRPDLKRGGFTEEEDELIIKLHAVLGNKWSLIAGRLAGRTDNEIKNY 230
Query: 553 W 555
W
Sbjct: 231 W 233
>gb|CO172303.1|CO172303 NDL1_28_G10.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_28_G10_A029 5', mRNA sequence
Length = 751
Score = 52.3 bits (110), Expect = 3e-006
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + S+ EE +I GN+W ++ PGRT++ +K +
Sbjct: 38 RCGKSCRLRWTNYLRPDLKRGLLSESEEKLIIDLHAAIGNRWSRIAAQLPGRTDNEIKNY 217
Query: 553 W 555
W
Sbjct: 218 W 220
Score = 36.6 bits (75), Expect = 0.086
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -3 / -2
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSR 411
FQ L + VLPG C I HLFP C + SS D F +G +
Sbjct: 222 FQ*FLISLSVLPGNCAAIRDHLFPMAACRSMMSFSSDSDNNPRFKSGRK 76
>gb|DR694707.1|DR694707 EST1084799 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEF89 3' end, mRNA sequence
Length = 790
Score = 52.3 bits (110), Expect = 3e-006
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + S+ EE +I GN+W ++ PGRT++ +K +
Sbjct: 80 RCGKSCRLRWTNYLRPDLKRGLLSESEEKLIIDLHAAIGNRWSRIAAQLPGRTDNEIKNY 259
Query: 553 W 555
W
Sbjct: 260 W 262
Score = 36.6 bits (75), Expect = 0.086
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -3 / -2
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSR 411
FQ L + VLPG C I HLFP C + SS D F +G +
Sbjct: 264 FQ*FLISLSVLPGNCAAIRDHLFPMAACRSMMSFSSDSDNNPRFKSGRK 118
>gb|DT638995.1|DT638995 EST1153926 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHL85 3' end, mRNA sequence
Length = 812
Score = 52.3 bits (110), Expect = 3e-006
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + S+ EE +I GN+W ++ PGRT++ +K +
Sbjct: 88 RCGKSCRLRWTNYLRPDLKRGLLSESEEKLIIDLHAAIGNRWSRIAAQLPGRTDNEIKNY 267
Query: 553 W 555
W
Sbjct: 268 W 270
Score = 36.6 bits (75), Expect = 0.086
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -3 / -1
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSR 411
FQ L + VLPG C I HLFP C + SS D F +G +
Sbjct: 272 FQ*FLISLSVLPGNCAAIRDHLFPMAACRSMMSFSSDSDNNPRFKSGRK 126
>gb|CO173249.1|CO173249 NDL1_35_A08.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_35_A08_A029 3', mRNA sequence
Length = 616
Score = 51.9 bits (109), Expect = 3e-006
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S+ E+ +++ + GNKW + PGRT++ +K +
Sbjct: 2 RCGKSCRLRWINYLRPDLKRGGFSEDEDDLIVKMHALLGNKWSLIAGRLPGRTDNEIKNY 181
Query: 553 W 555
W
Sbjct: 182 W 184
Score = 31.7 bits (64), Expect = 2.8
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -3 / -2
Query: 530 VLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHL 396
V PGK I HLFP + C SSS ++ +G R + HL
Sbjct: 159 VRPGKRPAIKDHLFPRSACILTIRSSSSSEKPPRLRSGRR*FIHL 25
>gb|CO201585.1|CO201585 RTCNT2_6_F07.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_6_F07_A029 5', mRNA sequence
Length = 859
Score = 51.0 bits (107), Expect = 6e-006
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S++E+ +I+ + GNKW + GRT++ +K +
Sbjct: 72 RCGKSCRLRWINYLRPDLKRGNFSEEEDELIIKLHSLLGNKWSLIAARMAGRTDNEIKNY 251
Query: 553 W 555
W
Sbjct: 252 W 254
>gb|DR163874.1|DR163874 RTFE1_45_A12.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_45_A12_A029 5', mRNA sequence
Length = 896
Score = 51.0 bits (107), Expect = 6e-006
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S++E+ +I+ + GNKW + GRT++ +K +
Sbjct: 101 RCGKSCRLRWINYLRPDLKRGNFSEEEDELIIKLHSLLGNKWSLIAARMAGRTDNEIKNY 280
Query: 553 W 555
W
Sbjct: 281 W 283
>gb|DR746217.1|DR746217 RTCU1_35_B06.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_35_B06_A029 5', mRNA sequence
Length = 458
Score = 51.0 bits (107), Expect = 6e-006
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S++E+ +I+ + G+KW + PGRT + +K +
Sbjct: 8 RCGKSCRLRWINYLRPNLKRGNFSEEEDDLIIKLHNLLGDKWSLIAGRLPGRTENEIKNY 187
Query: 553 W 555
W
Sbjct: 188 W 190
>gb|BE520012.1|BE520012 NXCI_028_B03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_028_B03 5' similar to Arabidopsis
thaliana sequence At5g52600 MYB82 (gb|AAF14064.1) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 328
Score = 50.5 bits (106), Expect = 9e-006
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + S EE +IR ++ GN+W + PGRT++ +K +
Sbjct: 81 RCGKSCRFRWVNYLRPNLKHGNISPDEEDLIIRLHKLLGNRWSLIAGRIPGRTDNEIKNY 260
Query: 553 W 555
W
Sbjct: 261 W 263
>gb|CF393224.1|CF393224 RTDR3_17_B01.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_17_B01_A022 5', mRNA
sequence
Length = 277
Score = 33.9 bits (69), Expect(2) = 1e-005
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1 / +3
Query: 256 SSSKNKKHRWSSEEDEALKQMVKRHGTKNWRTI 354
++ K W+ EED+ L Q ++ HG WR++
Sbjct: 12 ANGDRSKGAWTKEEDDRLTQYIQAHGEGCWRSL 110
Score = 33.5 bits (68), Expect(2) = 1e-005
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKW 498
R SC RW L P + + +S+ E+ +++ + GNKW
Sbjct: 132 RCGKSCRLRWINYLRPDLKRGGFSEDEDDLILKLHALLGNKW 257
>gb|DT632905.1|DT632905 EST1147836 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFP04 3' end, mRNA sequence
Length = 323
Score = 37.1 bits (76), Expect(2) = 2e-005
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKH 516
R SC RW L P + + S+ EE +I GN+W K+ H
Sbjct: 177 RCGKSCRLRWTNYLRPDLKRGLLSESEEQLIIDLHSQLGNRWSKIAAH 320
Score = 29.9 bits (60), Expect(2) = 2e-005
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1 / +3
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNWRTI 354
K+ W++EED+ L + HG WR +
Sbjct: 72 KRGPWTAEEDQKLISFILNHGHCCWRAV 155
>gb|CO173370.1|CO173370 NDL1_35_F03.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_35_F03_A029 5', mRNA sequence
Length = 745
Score = 49.2 bits (103), Expect = 2e-005
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = +1 / +2
Query: 385 SCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
SC RW L P + + ++++E+ +I+ V GNKW + GRT++ +K +W
Sbjct: 29 SCRLRWINYLRPDLKRGGFTEEEDELIIKLHAVLGNKWSLIAGRLAGRTDNEIKNYW 199
>gb|DR101544.1|DR101544 STRR1_74_C02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_74_C02_A033 3', mRNA sequence
Length = 817
Score = 49.2 bits (103), Expect = 2e-005
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = +1 / +3
Query: 385 SCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
SC RW L P + + ++++E+ +I+ V GNKW + GRT++ +K +W
Sbjct: 6 SCRLRWINYLRPDLKRGGFTEEEDELIIKLHAVLGNKWSLIAGRLAGRTDNEIKNYW 176
>gb|DR120088.1|DR120088 RTMG1_27_A10.g2_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_27_A10_A029 5', mRNA sequence
Length = 713
Score = 48.7 bits (102), Expect = 3e-005
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +1 / +2
Query: 412 LDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
L P I + +S EE ++R ++ GN+W + PGRT++ +K HW
Sbjct: 179 LRPRIKRRNFSSDEEELILRLHRLLGNRWSLIAGRLPGRTDNEIKNHW 322
>gb|DR167833.1|DR167833 RTPHOS1_21_A06.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_21_A06_A029 5', mRNA sequence
Length = 575
Score = 48.7 bits (102), Expect = 3e-005
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +1 / +3
Query: 397 RWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
RW L P I + +S +E+ +I+ + GNKW + PGRT++ +K +W
Sbjct: 3 RWINYLRPDIKRGNFSSEEDELIIQLHSLIGNKWSLIAAKLPGRTDNEIKNYW 161
>gb|BX680071.1|BX680071 BX680071 RS Pinus pinaster cDNA clone RS38G07, mRNA sequence
Length = 676
Score = 48.3 bits (101), Expect = 4e-005
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = +1 / +1
Query: 436 PWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
P++ +E+ ++RA +GNKW + + GRT++A+K HW
Sbjct: 4 PFTPEEDAIIVRAHAQHGNKWATIARMLSGRTDNAIKNHW 123
>gb|CD025405.1|CD025405 NXSI_051_D05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_051_D05 5' similar to Arabidopsis thaliana
sequence At4g37260 myb-related protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 128
Score = 47.8 bits (100), Expect = 6e-005
Identities = 16/37 (43%), Positives = 26/37 (70%)
Frame = +1 / +1
Query: 292 EEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRW 402
EED +L+++V+++G +NW I+ IPGR+ SC W
Sbjct: 4 EEDASLQRLVQKYGPRNWTLISKGIPGRSGKSCXLXW 114
>gb|CO173319.1|CO173319 NDL1_35_A08.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_35_A08_A029 5', mRNA sequence
Length = 617
Score = 47.8 bits (100), Expect = 6e-005
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +1 / +3
Query: 385 SCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
SC W L P + + +S+ E+ +++ + GNKW + PGRT++ +K +W
Sbjct: 3 SCRLLWINYLRPDLKRGGFSEDEDDLIVKMHALLGNKWSLIAGRLPGRTDNEIKNYW 173
>gb|DR079868.1|DR079868 RTFEPL1_18_F11.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_18_F11_A029 3', mRNA sequence
Length = 745
Score = 47.8 bits (100), Expect = 6e-005
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +1 / +2
Query: 397 RWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
RW L P + + +S+ E+ +++ + GNKW + PGRT++ +K +W
Sbjct: 5 RWMNYLRPQLKRGNFSEDEDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNYW 163
Score = 30.3 bits (61), Expect = 7.3
Identities = 20/54 (37%), Positives = 25/54 (46%)
Frame = -3 / -2
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHL 396
FQ L + V PGK I HL P C+ SSS ++ F G R + HL
Sbjct: 165 FQ*FLISLSVRPGKRPAIRDHLLPRRACSLRIRSSSSSEKFPRFS*GRR*FIHL 4
>gb|DR052727.1|DR052727 RTCA1_6_B03.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_6_B03_A029 5', mRNA sequence
Length = 801
Score = 47.4 bits (99), Expect = 8e-005
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L P + + +S++E+ +I+ + + GNKW + RT++ +K +
Sbjct: 74 RCGKSCKLRWINYLRPDLKRGNFSEEEDELIIKLRSLLGNKWSLIAGRLSWRTDNEIKNY 253
Query: 553 W 555
W
Sbjct: 254 W 256
>gb|CF395399.1|CF395399 RTDS2_11_H08.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_11_H08_A021 5', mRNA sequence
Length = 741
Score = 46.5 bits (97), Expect = 1e-004
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1 / +2
Query: 415 DPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
D + + +S++E+ +IR + GNKW + PGRT + +K HW
Sbjct: 101 DAHLKRGNFSEEEDELIIRLHSLLGNKWSLIAGRLPGRTGNEIKNHW 241
>gb|DR011876.1|DR011876 HEAT1_8_B02.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_8_B02_A029 5', mRNA sequence
Length = 763
Score = 46.0 bits (96), Expect = 2e-004
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +1 / +1
Query: 451 EELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
E+ +++A +GNKW + + PGRT++A+K HW
Sbjct: 10 EDAAILQAHAQHGNKWATIARALPGRTDNAIKNHW 114
>gb|DR017577.1|DR017577 STRS1_17_E03.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_E03_A034 3', mRNA sequence
Length = 738
Score = 46.0 bits (96), Expect = 2e-004
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +1 / +3
Query: 418 PAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
P + + +S+QE+ +I+ GNKW + + PGRT++ +K HW
Sbjct: 3 PDLKRGNFSEQEDELIIKFHSRLGNKWSLIARILPGRTDNEIKNHW 140
>gb|CX714163.1|CX714163 RTPQ1_18_D03.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_18_D03_A032 5', mRNA sequence
Length = 393
Score = 33.9 bits (69), Expect(2) = 2e-004
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1 / +1
Query: 256 SSSKNKKHRWSSEEDEALKQMVKRHGTKNWRTI 354
++ K W+ EED+ L Q ++ HG WR++
Sbjct: 43 ANGDRSKGAWTKEEDDRLTQYIQAHGEGCWRSL 141
Score = 29.4 bits (59), Expect(2) = 2e-004
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKW 498
R SC RW L P + + +S+ E+ +++ + GNK+
Sbjct: 163 RCGKSCRLRWINYLRPDLKRGGFSEDEDDLILKLHALLGNKY 288
>gb|CX651169.1|CX651169 COLD1_50_D03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_50_D03_A029 5', mRNA sequence
Length = 337
Score = 35.3 bits (72), Expect(2) = 3e-004
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKW 498
R SC RW L P I + S EE +IR ++ GN+W
Sbjct: 197 RCGKSCRLRWLNYLRPDIKRGNISPDEEELIIRLHRLLGNRW 322
Score = 27.7 bits (55), Expect(2) = 3e-004
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +1 / +2
Query: 283 WSSEEDEALKQMVKRHGTKNWRTI 354
W+ ED L + ++ HG WR +
Sbjct: 104 WTKREDMILSEYIRIHGDGGWRNM 175
>gb|CV034962.1|CV034962 RTNACL1_12_F05.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_12_F05_A029 5', mRNA sequence
Length = 619
Score = 33.9 bits (69), Expect(2) = 3e-004
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1 / +2
Query: 256 SSSKNKKHRWSSEEDEALKQMVKRHGTKNWRTI 354
++ K W+ EED+ L Q ++ HG WR++
Sbjct: 89 ANGDRSKGAWTKEEDDRLTQYIQAHGEGCWRSL 187
Score = 29.4 bits (59), Expect(2) = 3e-004
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKW 498
R SC RW L P + + +S+ E+ +++ + GNK+
Sbjct: 209 RCGKSCRLRWINYLRPDLKRGGFSEDEDDLILKLHALLGNKY 334
>gb|BX250447.1|BX250447 BX250447 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP037A09, mRNA sequence
Length = 399
Score = 44.7 bits (93), Expect = 5e-004
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = +1 / +3
Query: 412 LDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
L P + + +S++E+ +I+ + GNKW + PGRT++ +K +W
Sbjct: 9 LRPDLKRGNFSEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYW 152
>gb|CF476017.1|CF476017 RTWW2_16_B11.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_16_B11_A021 5', mRNA sequence
Length = 625
Score = 44.7 bits (93), Expect = 5e-004
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +1 / +2
Query: 439 WSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
++ E +++A +GNKW + + PGRT++A+K HW
Sbjct: 2 FTPSEVAAILQAHAQHGNKWATIARALPGRTDNAIKNHW 118
>gb|DR688762.1|DR688762 EST1078847 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACA29 3' end, mRNA sequence
Length = 757
Score = 44.2 bits (92), Expect = 7e-004
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1 / +3
Query: 283 WSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINK 432
W +D LK +V +H W I+ + ++A C S+W LDP+I K
Sbjct: 402 WKKTKD*TLKAVVMKHEKNQWAHISSLLVWKSAKQCKSQWYEWLDPSIKK 551
>gb|DR117679.1|DR117679 RTMG1_8_A11.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_8_A11_A029 5', mRNA sequence
Length = 801
Score = 43.3 bits (90), Expect = 0.001
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = +1 / +2
Query: 439 WSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+S++E+ +I+ + GNKW +V PGRT++ +K +W
Sbjct: 14 FSEEEDELIIKLHSLLGNKWSLIVGRLPGRTDNEIKNYW 130
>gb|BF609979.1|BF609979 NXSI_053_C11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_053_C11 5' similar to Arabidopsis thaliana
sequence At1g66230 myb-related transcription factor,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 531
Score = 30.8 bits (62), Expect(2) = 0.001
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTND 537
R SC RW L P + + S+ EE +I GN ++ P T++
Sbjct: 343 RCGXSCXLRWTNYLRPDLKRGLLSESEEKLIIDLHAAIGNXXSRIAAQLPXXTDN 507
Score = 30.3 bits (61), Expect(2) = 0.001
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1 / +1
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNWRTI 354
KK W++EED L + HG WR +
Sbjct: 238 KKGPWTAEEDRKLVNFITLHGHGCWREV 321
>gb|CF398623.1|CF398623 RTDS3_13_E02.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_13_E02_A022 3', mRNA sequence
Length = 754
Score = 42.9 bits (89), Expect = 0.002
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1 / +2
Query: 442 SQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
S++E+ +IR + GNKW + PGR+ + +K HW
Sbjct: 56 SEEEDELIIRLHSLLGNKWSLIAGRLPGRSGNEIKNHW 169
>gb|CF387233.1|CF387233 RTDR1_11_B07.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_11_B07_A015 5', mRNA
sequence
Length = 652
Score = 42.0 bits (87), Expect = 0.003
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +1 / +1
Query: 418 PAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
P + + ++++E+ +I+ GNKW + PGRT++ +K +W
Sbjct: 1 PDLKRGSFTEEEDELIIKLHSFVGNKWSLIAGRLPGRTDNEIKNYW 138
>gb|CF390133.1|CF390133 RTDR2_12_C07.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_12_C07_A021 5', mRNA
sequence
Length = 712
Score = 31.2 bits (63), Expect(2) = 0.004
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +1 / +1
Query: 481 VYGNKWCKMVKHFPGRTNDALKEHW 555
V+ +W ++ PGRT++ +K +W
Sbjct: 526 VFHTRWSRIAAQLPGRTDNEIKNYW 600
Score = 28.1 bits (56), Expect(2) = 0.004
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKW 498
R SC RW L P + + S+ EE +I GN++
Sbjct: 312 RCGKSCRLRWTNYLRPDLKRGLLSESEEKLIIDLHAAIGNRY 437
>gb|BE241255.1|BE241255 NXNV_183_D12_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_183_D12 5' similar to Arabidopsis thaliana
sequence At5g12870 putative transcription factor (MYB46)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 419
Score = 41.6 bits (86), Expect = 0.004
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1 / +2
Query: 439 WSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+S QEE +I + GN+W ++ PGRT++ +K W
Sbjct: 5 FSPQEEQLIIHLHSILGNRWSQISARLPGRTDNEIKNFW 121
>gb|CO162486.1|CO162486 FLD1_35_D02.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_35_D02_A029 5', mRNA sequence
Length = 779
Score = 41.6 bits (86), Expect = 0.004
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +1 / -3
Query: 439 WSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
++++E+ +I+ V GNKW + PGRT++ +K +W
Sbjct: 774 FTEEEDELIIKLHSVVGNKWSLIAGRLPGRTDNEIKNYW 658
>gb|DR117678.1|DR117678 RTMG1_8_A10.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_8_A10_A029 5', mRNA sequence
Length = 852
Score = 41.6 bits (86), Expect = 0.004
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +1 / +2
Query: 439 WSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+S++E+ +I+ + GNKW + PGRT++ +K +W
Sbjct: 20 FSEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYW 136
>gb|CO198686.1|CO198686 GEO1_15_F03.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_15_F03_A029 5', mRNA sequence
Length = 700
Score = 41.1 bits (85), Expect = 0.006
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = +1 / +2
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K +W+SEE+ ALK V+++GT WRTI
Sbjct: 152 KQKWTSEEEGALKAGVEKYGTGKWRTI 232
>gb|CX648339.1|CX648339 COLD1_28_B12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_28_B12_A029 3', mRNA sequence
Length = 868
Score = 41.1 bits (85), Expect = 0.006
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1 / +1
Query: 442 SQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+++E+ +I+ V GNKW + PGRT++ +K +W
Sbjct: 1 TEEEDELIIKLHSVVGNKWSLIAGRLPGRTDNEIKNYW 114
>gb|DR684834.1|DR684834 EST1074911 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAX14 3' end, mRNA sequence
Length = 667
Score = 41.1 bits (85), Expect = 0.006
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = +1 / +1
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K +W+SEE+ ALK V+++GT WRTI
Sbjct: 184 KQKWTSEEEGALKAGVEKYGTGKWRTI 264
>gb|DT632078.1|DT632078 EST1147009 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFG23 3' end, mRNA sequence
Length = 675
Score = 41.1 bits (85), Expect = 0.006
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K +W+SEE+ ALK V+++GT WRTI
Sbjct: 192 KQKWTSEEEGALKAGVEKYGTGKWRTI 272
>gb|CF474496.1|CF474496 RTWW2_9_D02.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_9_D02_A021 3', mRNA sequence
Length = 472
Score = 40.7 bits (84), Expect = 0.008
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1 / -3
Query: 424 INKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
I E S EE ++R ++ GN+W + PGRT++ +K +W
Sbjct: 470 IRHEGISLDEEDLIVRLHRLLGNRWSLIAGRLPGRTDNEIKNYW 339
>gb|DR177927.1|DR177927 RTMNUT1_8_E11.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_8_E11_A029 3', mRNA sequence
Length = 794
Score = 40.7 bits (84), Expect = 0.008
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1 / +2
Query: 448 QEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
QE+ +I+ GNKW + + PGRT++ +K HW
Sbjct: 2 QEDELIIKFHSRXGNKWSLIARILPGRTDNEIKNHW 109
>gb|BG319376.1|BG319376 NXPV_027_C05_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_027_C05 5' similar to Arabidopsis
thaliana sequence At1g63910 putative MYB family
transcription factor see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 296
Score = 29.4 bits (59), Expect(2) = 0.014
Identities = 15/48 (31%), Positives = 18/48 (37%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKH 516
R SC RW L P I +S EE +I + N W H
Sbjct: 153 RCGKSCRLRWINYLRPDIXXGNFSPNEEKLIIHLHTMXXNXWAYXXSH 296
Score = 27.2 bits (54), Expect(2) = 0.014
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1 / +3
Query: 256 SSSKNKKHRWSSEEDEALKQMVKRHGTKNWRTI 354
+ K K+ WS +EDE L + ++G W +
Sbjct: 33 NQQKVKRGLWSPDEDEKLINYITKYGYGCWSEV 131
>gb|CF672338.1|CF672338 RTCNT1_62_H04.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_62_H04_A029 5', mRNA sequence
Length = 701
Score = 28.6 bits (57), Expect(2) = 0.019
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKW 498
R SC RW L P I + EE +IR ++ GN++
Sbjct: 247 RCGKSCRLRWLNYLRPDIKRGNICPAEEELIIRLHRLLGNRY 372
Score = 28.6 bits (57), Expect(2) = 0.019
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1 / +3
Query: 283 WSSEEDEALKQMVKRHGTKNWRTI 354
W+ ED L + V+ HG WR +
Sbjct: 66 WTKREDMILSEYVRIHGDGGWRNL 137
>gb|BX000680.1|BX000680 BX000680 Pinus pinaster xylem Pinus pinaster cDNA clone PPSW14,
mRNA sequence
Length = 235
Score = 39.3 bits (81), Expect = 0.021
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1 / -2
Query: 442 SQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
S EE +IR + GN+W + PGRT++ +K +W
Sbjct: 222 SADEEELIIRLHNLLGNRWSLIAGRVPGRTDNEVKNYW 109
>gb|BX679518.1|BX679518 BX679518 RS Pinus pinaster cDNA clone RS27D10, mRNA sequence
Length = 405
Score = 39.3 bits (81), Expect = 0.021
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1 / +2
Query: 424 INKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ ++ W QE+ +L+ + YG KW K+ GRT +++ +
Sbjct: 110 VRRKAWQDQEDEQLLELVEKYGKKWSKIASIMKGRTGKPIRDRY 241
>gb|DR386158.1|DR386158 RTHG1_13_G03.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_13_G03_A029 3', mRNA sequence
Length = 786
Score = 39.3 bits (81), Expect = 0.021
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1 / +2
Query: 442 SQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
S EE +IR + GN+W + PGRT++ +K +W
Sbjct: 20 SADEEELIIRLHNLLGNRWSLIAGRVPGRTDNEVKNYW 133
>gb|CF665728.1|CF665728 RTCNT1_18_C05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_18_C05_A029 3', mRNA sequence
Length = 704
Score = 38.9 bits (80), Expect = 0.028
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +1 / +2
Query: 439 WSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+S+ E+ +++ + GNKW + PGRT++ +K +W
Sbjct: 14 FSEDEDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNYW 130
>gb|CO367106.1|CO367106 RTK1_32_E03.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_32_E03_A029 3', mRNA sequence
Length = 867
Score = 38.9 bits (80), Expect = 0.028
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +1 / +3
Query: 439 WSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+S+ E+ +++ + GNKW + PGRT++ +K +W
Sbjct: 12 FSEDEDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNYW 128
>gb|DR015297.1|DR015297 STRS1_2_D10.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_2_D10_A034 5', mRNA sequence
Length = 871
Score = 38.9 bits (80), Expect = 0.028
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +1 / +1
Query: 439 WSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+S+ E+ +++ + GNKW + PGRT++ +K +W
Sbjct: 4 FSEDEDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNYW 120
>gb|DR059765.1|DR059765 RTNIT1_19_D08.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_19_D08_A029 5', mRNA sequence
Length = 832
Score = 38.9 bits (80), Expect = 0.028
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +1 / -2
Query: 439 WSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+S+ E+ +++ + GNKW + PGRT++ +K +W
Sbjct: 819 FSEDEDDLILKLHALLGNKWSLIAGRLPGRTDNEIKNYW 703
>gb|CF470298.1|CF470298 RTDS1_18_B11.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_18_B11_A015 5', mRNA sequence
Length = 800
Score = 29.4 bits (59), Expect(2) = 0.046
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1 / +1
Query: 250 ESSSSKNKKHRWSSEEDEALKQMVKRHGTKNWRTIACA 363
+ ++ +K W+ EED L ++ HG W +A A
Sbjct: 46 DEEQAETRKGPWTVEEDMQLTGYIRLHGEGRWSFLARA 159
Score = 26.3 bits (52), Expect(2) = 0.046
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGN 492
R SC RW L P + + + +EE +I +GN
Sbjct: 176 RTGRSCRLRWLNSLRPDLKRSKITPEEEHLIIELHGRWGN 295
>gb|CV033833.1|CV033833 RTNACL1_36_H06.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_36_H06_A029 5', mRNA sequence
Length = 777
Score = 29.4 bits (59), Expect(2) = 0.046
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1 / +3
Query: 250 ESSSSKNKKHRWSSEEDEALKQMVKRHGTKNWRTIACA 363
+ ++ +K W+ EED L ++ HG W +A A
Sbjct: 195 DEEQAETRKGPWTVEEDMQLTGYIRLHGEGRWSFLARA 308
Score = 26.3 bits (52), Expect(2) = 0.046
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGN 492
R SC RW L P + + + +EE +I +GN
Sbjct: 321 RTGRSCRLRWLNSLRPDLKRSKITPEEEHLIIELHGRWGN 440
>gb|DR112102.1|DR112102 RTS1_25_H07.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_25_H07_A029 5', mRNA sequence
Length = 651
Score = 29.4 bits (59), Expect(2) = 0.046
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1 / +1
Query: 250 ESSSSKNKKHRWSSEEDEALKQMVKRHGTKNWRTIACA 363
+ ++ +K W+ EED L ++ HG W +A A
Sbjct: 181 DEEQAETRKGPWTVEEDMQLTGYIRLHGEGRWSFLARA 294
Score = 26.3 bits (52), Expect(2) = 0.046
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGN 492
R SC RW L P + + + +EE +I +GN
Sbjct: 307 RTGRSCRLRWLNSLRPDLKRSKITPEEEHLIIELHGRWGN 426
>gb|CF389453.1|CF389453 RTDR2_7_C09.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_7_C09_A021 5', mRNA
sequence
Length = 638
Score = 38.0 bits (78), Expect = 0.053
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K +W+SEE+ AL+ V ++GT WRTI
Sbjct: 132 KLKWTSEEESALRAGVVKYGTGKWRTI 212
>gb|DR682272.1|DR682272 EST1072347 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA875 3' end, mRNA sequence
Length = 781
Score = 38.0 bits (78), Expect = 0.053
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +1 / +2
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K +W+SEE+ AL+ V ++GT WRTI
Sbjct: 71 KLKWTSEEESALRAGVVKYGTGKWRTI 151
>gb|DR683470.1|DR683470 EST1073546 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAH58 3' end, mRNA sequence
Length = 530
Score = 38.0 bits (78), Expect = 0.053
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +1 / +1
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K +W+SEE+ AL+ V ++GT WRTI
Sbjct: 97 KLKWTSEEESALRAGVVKYGTGKWRTI 177
>gb|DT630777.1|DT630777 EST1145708 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF011 3' end, mRNA sequence
Length = 714
Score = 38.0 bits (78), Expect = 0.053
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +1 / +1
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K +W+SEE+ AL+ V ++GT WRTI
Sbjct: 79 KLKWTSEEESALRAGVVKYGTGKWRTI 159
Database: Pinus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:25 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.311 0.125 0.383
Matrix: BLOSUM62
Number of Hits to DB: 341,744,881
Number of Sequences: 355925
Number of extensions: 5038641
Number of successful extensions: 53365
Number of sequences better than 10.0: 350
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 7070147040
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 0 ( 0.0 bits)
S1: 42 (21.8 bits)