TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QBTB.060L08F020610.3.1
         (677 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BI397974.1|BI397974  NXPV_112_H04_F NXPV (Nsf Xylem Plani...   134   6e-031
gb|DR167393.1|DR167393  RTPHOS1_18_B12.g1_A029 Roots minus p...   100   3e-023

>gb|BI397974.1|BI397974 NXPV_112_H04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
           cDNA clone NXPV_112_H04 5' similar to Arabidopsis
           thaliana sequence At3g10740 putative
           alpha-L-arabinofuranosidase see
           http://mips.gsf.de/proj/thal/db/index.html, mRNA
           sequence
          Length = 332

 Score =  134 bits (287), Expect = 6e-031
 Identities = 55/88 (62%), Positives = 65/88 (73%)
 Frame = +1 / +2

                                                                       
Query: 160 QNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLIIGDESSII 339
           Q  R+IP  +FG+FF  INHAGAGGLWAELVSN  FEAGGPNTPSNI       DE S++
Sbjct: 68  QPGRQIPSTLFGLFFXXINHAGAGGLWAELVSNXXFEAGGPNTPSNIXXXSPXXDEXSVL 247

                                       
Query: 340 VGTDRTSCFERNPVALRMEVLCGSKKTN 423
           + TDR+S FE N +ALRME+LC S+  N
Sbjct: 248 LATDRSSLFELNKIALRMEILCDSEGPN 331



>gb|DR167393.1|DR167393 RTPHOS1_18_B12.g1_A029 Roots minus phosphorous Pinus taeda cDNA
           clone RTPHOS1_18_B12_A029 5', mRNA sequence
          Length = 785

 Score =  100 bits (212), Expect(2) = 3e-023
 Identities = 39/57 (68%), Positives = 45/57 (78%)
 Frame = +1 / +1

                                                                    
Query: 349 DRTSCFERNPVALRMEVLCGSKKTNACPSGGVGVYNPGYWGMNIEKGKVYKVSLHVR 519
           DR+S FE N +ALRME+LC S+  N CP GGVGVYNPGYWGMNIE+G+ Y V L VR
Sbjct: 4   DRSSLFELNKIALRMEILCDSEGPNQCPVGGVGVYNPGYWGMNIEEGESYHVVLWVR 174




 Score = 28.6 bits (56), Expect(2) = 3e-023
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3 / +1

                                                
Query: 567 GYKKLAAHTITGSKKTFAKWTKVEFHLRSNQNNSNSR 677
           G   LAA +I  S      WTK EF L++   +  +R
Sbjct: 220 GLNILAASSIIASSSEIQNWTKKEFILKATATDHYAR 330



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 406,462,602
Number of Sequences: 355925
Number of extensions: 6307850
Number of successful extensions: 53077
Number of sequences better than 1.0e-020: 3
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 9327752585
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)