TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBN10e11.xg.2.4
(664 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX645971.1|CX645971 COLD1_6_A08.g1_A029 Root cold Pinus ... 92 3e-032
gb|DR691945.1|DR691945 EST1082032 Normalized pine embryo li... 92 1e-031
gb|DT636879.1|DT636879 EST1151810 Normalized pine embryo li... 92 1e-031
gb|DR693591.1|DR693591 EST1083680 Normalized pine embryo li... 92 2e-031
gb|DR098181.1|DR098181 STRR1_39_D08.g1_A033 Stem Response R... 92 3e-024
gb|DR118894.1|DR118894 RTMG1_19_G09.g1_A029 Roots minus mag... 92 3e-024
gb|CF387231.1|CF387231 RTDR1_11_H11.g1_A015 Loblolly pine r... 63 2e-021
gb|CO370524.1|CO370524 RTK1_68_A09.g1_A029 Roots minus pota... 62 3e-021
gb|CF387574.1|CF387574 RTDR1_20_C08.g1_A015 Loblolly pine r... 62 3e-021
gb|DR015808.1|DR015808 STRS1_5_F05.g1_A034 Shoot tip pitch ... 62 3e-021
gb|CF388646.1|CF388646 RTDR2_4_H02.g1_A021 Loblolly pine ro... 62 3e-021
gb|CO409454.1|CO409454 EST839839 Sequencing ESTs from loblo... 62 4e-021
gb|DN446266.1|DN446266 EST942065 Sequencing ESTs from loblo... 62 4e-021
gb|DN461652.1|DN461652 EST957451 Sequencing ESTs from loblo... 62 4e-021
gb|DN464524.1|DN464524 EST960323 Sequencing ESTs from loblo... 62 4e-021
gb|DN460009.1|DN460009 EST955808 Sequencing ESTs from loblo... 62 4e-021
gb|DT625515.1|DT625515 EST1157439 Sequencing ESTs from lobl... 62 4e-021
gb|CO409265.1|CO409265 EST839650 Sequencing ESTs from loblo... 62 4e-021
gb|DT624374.1|DT624374 EST1158649 Sequencing ESTs from lobl... 62 4e-021
gb|CF479172.1|CF479172 RTWW3_24_C04.g1_A022 Well-watered lo... 62 4e-021
>gb|CX645971.1|CX645971 COLD1_6_A08.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_6_A08_A029 5', mRNA sequence
Length = 691
Score = 92.3 bits (195), Expect(2) = 3e-032
Identities = 36/51 (70%), Positives = 39/51 (76%)
Frame = -2 / +2
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G Y E+ RVLKPGQ FA EWC+TD FDP N +H KAEIELGDGLPDIR
Sbjct: 302 GCYKEIKRVLKPGQLFAAYEWCMTDSFDPKNEEHQKIKAEIELGDGLPDIR 454
Score = 66.1 bits (138), Expect(2) = 3e-032
Identities = 24/39 (61%), Positives = 32/39 (82%)
Frame = -2 / +2
Query: 360 GLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEAV 244
GL + C +KGDFM MP +++TFDA YAI+ATC+AP+AV
Sbjct: 185 GLDKSCDFVKGDFMKMPFSNDTFDAVYAIEATCHAPDAV 301
>gb|DR691945.1|DR691945 EST1082032 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADG12 3' end, mRNA sequence
Length = 832
Score = 92.3 bits (195), Expect(2) = 1e-031
Identities = 36/51 (70%), Positives = 39/51 (76%)
Frame = -2 / +3
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G Y E+ RVLKPGQ FA EWC+TD FDP N +H KAEIELGDGLPDIR
Sbjct: 543 GCYKEIKRVLKPGQLFAAYEWCMTDSFDPKNEEHQKIKAEIELGDGLPDIR 695
Score = 64.3 bits (134), Expect(2) = 1e-031
Identities = 23/39 (58%), Positives = 31/39 (79%)
Frame = -2 / +3
Query: 360 GLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEAV 244
GL + C +KGDFM MP +++TFDA Y I+ATC+AP+AV
Sbjct: 426 GLDKSCDFVKGDFMKMPFSNDTFDAVYTIEATCHAPDAV 542
>gb|DT636879.1|DT636879 EST1151810 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGX11 3' end, mRNA sequence
Length = 829
Score = 92.3 bits (195), Expect(2) = 1e-031
Identities = 36/51 (70%), Positives = 39/51 (76%)
Frame = -2 / +2
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G Y E+ RVLKPGQ FA EWC+TD FDP N +H KAEIELGDGLPDIR
Sbjct: 551 GCYKEIKRVLKPGQLFAAYEWCMTDSFDPKNEEHQKIKAEIELGDGLPDIR 703
Score = 64.3 bits (134), Expect(2) = 1e-031
Identities = 23/39 (58%), Positives = 31/39 (79%)
Frame = -2 / +2
Query: 360 GLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEAV 244
GL + C +KGDFM MP +++TFDA Y I+ATC+AP+AV
Sbjct: 434 GLDKSCDFVKGDFMKMPFSNDTFDAVYTIEATCHAPDAV 550
>gb|DR693591.1|DR693591 EST1083680 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAE147 3' end, mRNA sequence
Length = 733
Score = 92.3 bits (195), Expect(2) = 2e-031
Identities = 36/51 (70%), Positives = 39/51 (76%)
Frame = -2 / +1
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G Y E+ RVLKPGQ FA EWC+TD FDP N +H KAEIELGDGLPDIR
Sbjct: 484 GCYKEIKRVLKPGQLFAAYEWCMTDSFDPKNEEHQRIKAEIELGDGLPDIR 636
Score = 63.4 bits (132), Expect(2) = 2e-031
Identities = 23/39 (58%), Positives = 31/39 (79%)
Frame = -2 / +1
Query: 360 GLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPEAV 244
GL + C + GDFM MP +++TFDA YAI+ATC+AP+AV
Sbjct: 367 GLDKSCDFVMGDFMKMPFSNDTFDAVYAIEATCHAPDAV 483
>gb|DR098181.1|DR098181 STRR1_39_D08.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_39_D08_A033 5', mRNA sequence
Length = 741
Score = 92.3 bits (195), Expect(2) = 3e-024
Identities = 36/51 (70%), Positives = 39/51 (76%)
Frame = -2 / +1
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G Y E+ RVLKPGQ FA EWC+TD FDP N +H KAEIELGDGLPDIR
Sbjct: 70 GCYKEIKRVLKPGQLFAAYEWCMTDSFDPKNEEHQKIKAEIELGDGLPDIR 222
Score = 39.6 bits (80), Expect(2) = 3e-024
Identities = 14/19 (73%), Positives = 18/19 (94%)
Frame = -2 / +1
Query: 300 NTFDAAYAIQATCYAPEAV 244
+TFDA YAI+ATC+AP+AV
Sbjct: 13 DTFDAVYAIEATCHAPDAV 69
>gb|DR118894.1|DR118894 RTMG1_19_G09.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_19_G09_A029 5', mRNA sequence
Length = 578
Score = 92.3 bits (195), Expect(2) = 3e-024
Identities = 36/51 (70%), Positives = 39/51 (76%)
Frame = -2 / +1
Query: 153 GVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
G Y E+ RVLKPGQ FA EWC+TD FDP N +H KAEIELGDGLPDIR
Sbjct: 106 GCYKEIKRVLKPGQLFAAYEWCMTDSFDPKNEEHQKIKAEIELGDGLPDIR 258
Score = 39.6 bits (80), Expect(2) = 3e-024
Identities = 14/19 (73%), Positives = 18/19 (94%)
Frame = -2 / +1
Query: 300 NTFDAAYAIQATCYAPEAV 244
+TFDA YAI+ATC+AP+AV
Sbjct: 49 DTFDAVYAIEATCHAPDAV 105
>gb|CF387231.1|CF387231 RTDR1_11_H11.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_11_H11_A015 5', mRNA
sequence
Length = 644
Score = 62.9 bits (131), Expect(2) = 2e-021
Identities = 24/45 (53%), Positives = 33/45 (73%)
Frame = -2 / +2
Query: 384 LQEHIFSAGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPE 250
++ H AGL C + G+F+ MP ADN+FDAAY+I+ATC+APE
Sbjct: 11 VRSHNKKAGLDRLCEVVCGNFLKMPFADNSFDAAYSIEATCHAPE 145
Score = 59.3 bits (123), Expect(2) = 2e-021
Identities = 24/52 (46%), Positives = 32/52 (61%)
Frame = -2 / +2
Query: 156 QGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
Q VY+E+YRVLKPG+ + EW T F +N +H+ IE GD LP +R
Sbjct: 149 QDVYAEIYRVLKPGRLYVTYEWVTTPKFQGDNPEHVEIIHGIEHGDALPGLR 304
>gb|CO370524.1|CO370524 RTK1_68_A09.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_68_A09_A029 5', mRNA sequence
Length = 812
Score = 62.5 bits (130), Expect(2) = 3e-021
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = -2 / +1
Query: 381 QEHIFSAGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPE 250
+ H AGL C + G+F+ MP ADN+FDAAY+I+ATC+APE
Sbjct: 73 RSHNKKAGLDRLCEVVCGNFLKMPFADNSFDAAYSIEATCHAPE 204
Score = 59.3 bits (123), Expect(2) = 3e-021
Identities = 24/52 (46%), Positives = 32/52 (61%)
Frame = -2 / +1
Query: 156 QGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
Q VY+E+YRVLKPG+ + EW T F +N +H+ IE GD LP +R
Sbjct: 208 QDVYAEIYRVLKPGRLYVTYEWVTTPKFQGDNPEHVEIIHGIEHGDALPGLR 363
>gb|CF387574.1|CF387574 RTDR1_20_C08.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_20_C08_A015 5', mRNA
sequence
Length = 765
Score = 62.5 bits (130), Expect(2) = 3e-021
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = -2 / +1
Query: 381 QEHIFSAGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPE 250
+ H AGL C + G+F+ MP ADN+FDAAY+I+ATC+APE
Sbjct: 166 RSHNKKAGLDRLCEVVCGNFLKMPFADNSFDAAYSIEATCHAPE 297
Score = 59.3 bits (123), Expect(2) = 3e-021
Identities = 24/52 (46%), Positives = 32/52 (61%)
Frame = -2 / +1
Query: 156 QGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
Q VY+E+YRVLKPG+ + EW T F +N +H+ IE GD LP +R
Sbjct: 301 QDVYAEIYRVLKPGRLYVTYEWVTTPKFQGDNPEHVEIIHGIEHGDALPGLR 456
>gb|DR015808.1|DR015808 STRS1_5_F05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_F05_A034 5', mRNA sequence
Length = 725
Score = 62.5 bits (130), Expect(2) = 3e-021
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = -2 / +3
Query: 381 QEHIFSAGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPE 250
+ H AGL C + G+F+ MP ADN+FDAAY+I+ATC+APE
Sbjct: 126 RSHNKKAGLDRLCEVVCGNFLKMPFADNSFDAAYSIEATCHAPE 257
Score = 59.3 bits (123), Expect(2) = 3e-021
Identities = 24/52 (46%), Positives = 32/52 (61%)
Frame = -2 / +3
Query: 156 QGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
Q VY+E+YRVLKPG+ + EW T F +N +H+ IE GD LP +R
Sbjct: 261 QDVYAEIYRVLKPGRLYVTYEWVTTPKFQGDNPEHVEIIHGIEHGDALPGLR 416
>gb|CF388646.1|CF388646 RTDR2_4_H02.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_4_H02_A021 5', mRNA
sequence
Length = 686
Score = 62.5 bits (130), Expect(2) = 3e-021
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = -2 / +1
Query: 381 QEHIFSAGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPE 250
+ H AGL C + G+F+ MP ADN+FDAAY+I+ATC+APE
Sbjct: 163 RSHNKKAGLDRLCEVVCGNFLKMPFADNSFDAAYSIEATCHAPE 294
Score = 59.3 bits (123), Expect(2) = 3e-021
Identities = 24/52 (46%), Positives = 32/52 (61%)
Frame = -2 / +1
Query: 156 QGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
Q VY+E+YRVLKPG+ + EW T F +N +H+ IE GD LP +R
Sbjct: 298 QDVYAEIYRVLKPGRLYVTYEWVTTPKFQGDNPEHVEIIHGIEHGDALPGLR 453
>gb|CO409454.1|CO409454 EST839839 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAKQ13 5' end, mRNA sequence
Length = 925
Score = 62.5 bits (130), Expect(2) = 4e-021
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = -2 / +1
Query: 381 QEHIFSAGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPE 250
+ H AGL C + G+F+ MP ADN+FDAAY+I+ATC+APE
Sbjct: 58 RSHNKKAGLDRLCEVVCGNFLKMPFADNSFDAAYSIEATCHAPE 189
Score = 58.8 bits (122), Expect(2) = 4e-021
Identities = 24/52 (46%), Positives = 32/52 (61%)
Frame = -2 / +1
Query: 156 QGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
Q VY+E+YRVLKPG+ + EW T F +N +H+ IE GD LP +R
Sbjct: 193 QDVYAEIYRVLKPGRLYVTYEWVTTPKFHGDNPEHVEIIHGIEHGDALPGLR 348
>gb|DN446266.1|DN446266 EST942065 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIBF77 5' end, mRNA sequence
Length = 924
Score = 62.5 bits (130), Expect(2) = 4e-021
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = -2 / +1
Query: 381 QEHIFSAGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPE 250
+ H AGL C + G+F+ MP ADN+FDAAY+I+ATC+APE
Sbjct: 58 RSHNKKAGLDRLCEVVCGNFLKMPFADNSFDAAYSIEATCHAPE 189
Score = 58.8 bits (122), Expect(2) = 4e-021
Identities = 24/52 (46%), Positives = 32/52 (61%)
Frame = -2 / +1
Query: 156 QGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
Q VY+E+YRVLKPG+ + EW T F +N +H+ IE GD LP +R
Sbjct: 193 QDVYAEIYRVLKPGRLYVTYEWVTTPKFHGDNPEHVEIIHGIEHGDALPGLR 348
>gb|DN461652.1|DN461652 EST957451 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIIC81 5' end, mRNA sequence
Length = 923
Score = 62.5 bits (130), Expect(2) = 4e-021
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = -2 / +3
Query: 381 QEHIFSAGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPE 250
+ H AGL C + G+F+ MP ADN+FDAAY+I+ATC+APE
Sbjct: 324 RSHNKKAGLDRLCEVVCGNFLKMPFADNSFDAAYSIEATCHAPE 455
Score = 58.8 bits (122), Expect(2) = 4e-021
Identities = 24/52 (46%), Positives = 32/52 (61%)
Frame = -2 / +3
Query: 156 QGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
Q VY+E+YRVLKPG+ + EW T F +N +H+ IE GD LP +R
Sbjct: 459 QDVYAEIYRVLKPGRLYVTYEWVTTPKFHGDNPEHVEIIHGIEHGDALPGLR 614
>gb|DN464524.1|DN464524 EST960323 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIJD20 5' end, mRNA sequence
Length = 921
Score = 62.5 bits (130), Expect(2) = 4e-021
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = -2 / +3
Query: 381 QEHIFSAGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPE 250
+ H AGL C + G+F+ MP ADN+FDAAY+I+ATC+APE
Sbjct: 597 RSHNKKAGLDRLCEVVCGNFLKMPFADNSFDAAYSIEATCHAPE 728
Score = 58.8 bits (122), Expect(2) = 4e-021
Identities = 24/52 (46%), Positives = 32/52 (61%)
Frame = -2 / +3
Query: 156 QGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
Q VY+E+YRVLKPG+ + EW T F +N +H+ IE GD LP +R
Sbjct: 732 QDVYAEIYRVLKPGRLYVTYEWVTTPKFHGDNPEHVEIIHGIEHGDALPGLR 887
>gb|DN460009.1|DN460009 EST955808 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHT54 5' end, mRNA sequence
Length = 905
Score = 62.5 bits (130), Expect(2) = 4e-021
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = -2 / +1
Query: 381 QEHIFSAGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPE 250
+ H AGL C + G+F+ MP ADN+FDAAY+I+ATC+APE
Sbjct: 523 RSHNKKAGLDRLCEVVCGNFLKMPFADNSFDAAYSIEATCHAPE 654
Score = 58.8 bits (122), Expect(2) = 4e-021
Identities = 24/52 (46%), Positives = 32/52 (61%)
Frame = -2 / +1
Query: 156 QGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
Q VY+E+YRVLKPG+ + EW T F +N +H+ IE GD LP +R
Sbjct: 658 QDVYAEIYRVLKPGRLYVTYEWVTTPKFHGDNPEHVEIIHGIEHGDALPGLR 813
>gb|DT625515.1|DT625515 EST1157439 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA079 5' end, mRNA sequence
Length = 902
Score = 62.5 bits (130), Expect(2) = 4e-021
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = -2 / +1
Query: 381 QEHIFSAGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPE 250
+ H AGL C + G+F+ MP ADN+FDAAY+I+ATC+APE
Sbjct: 58 RSHNKKAGLDRLCEVVCGNFLKMPFADNSFDAAYSIEATCHAPE 189
Score = 58.8 bits (122), Expect(2) = 4e-021
Identities = 24/52 (46%), Positives = 32/52 (61%)
Frame = -2 / +1
Query: 156 QGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
Q VY+E+YRVLKPG+ + EW T F +N +H+ IE GD LP +R
Sbjct: 193 QDVYAEIYRVLKPGRLYVTYEWVTTPKFHGDNPEHVEIIHGIEHGDALPGLR 348
>gb|CO409265.1|CO409265 EST839650 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAKN56 5' end, mRNA sequence
Length = 880
Score = 62.5 bits (130), Expect(2) = 4e-021
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = -2 / +1
Query: 381 QEHIFSAGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPE 250
+ H AGL C + G+F+ MP ADN+FDAAY+I+ATC+APE
Sbjct: 58 RSHNKKAGLDRLCEVVCGNFLKMPFADNSFDAAYSIEATCHAPE 189
Score = 58.8 bits (122), Expect(2) = 4e-021
Identities = 24/52 (46%), Positives = 32/52 (61%)
Frame = -2 / +1
Query: 156 QGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
Q VY+E+YRVLKPG+ + EW T F +N +H+ IE GD LP +R
Sbjct: 193 QDVYAEIYRVLKPGRLYVTYEWVTTPKFHGDNPEHVEIIHGIEHGDALPGLR 348
>gb|DT624374.1|DT624374 EST1158649 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAD91 5' end, mRNA sequence
Length = 854
Score = 62.5 bits (130), Expect(2) = 4e-021
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = -2 / +1
Query: 381 QEHIFSAGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPE 250
+ H AGL C + G+F+ MP ADN+FDAAY+I+ATC+APE
Sbjct: 46 RSHNKKAGLDRLCEVVCGNFLKMPFADNSFDAAYSIEATCHAPE 177
Score = 58.8 bits (122), Expect(2) = 4e-021
Identities = 24/52 (46%), Positives = 32/52 (61%)
Frame = -2 / +1
Query: 156 QGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
Q VY+E+YRVLKPG+ + EW T F +N +H+ IE GD LP +R
Sbjct: 181 QDVYAEIYRVLKPGRLYVTYEWVTTPKFHGDNPEHVEIIHGIEHGDALPGLR 336
>gb|CF479172.1|CF479172 RTWW3_24_C04.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_24_C04_A022 5', mRNA sequence
Length = 664
Score = 62.5 bits (130), Expect(2) = 4e-021
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = -2 / +3
Query: 381 QEHIFSAGLSEQCCSLKGDFMNMPIADNTFDAAYAIQATCYAPE 250
+ H AGL C + G+F+ MP ADN+FDAAY+I+ATC+APE
Sbjct: 351 RSHNKKAGLDRLCEVVCGNFLKMPFADNSFDAAYSIEATCHAPE 482
Score = 58.8 bits (122), Expect(2) = 4e-021
Identities = 24/52 (46%), Positives = 32/52 (61%)
Frame = -2 / +3
Query: 156 QGVYSEVYRVLKPGQYFALDEWCLTDLFDPNNAKHLTTKAEIELGDGLPDIR 1
Q VY+E+YRVLKPG+ + EW T F +N +H+ IE GD LP +R
Sbjct: 486 QDVYAEIYRVLKPGRLYVTYEWVTTPKFHGDNPEHVEIIHGIEHGDALPGLR 641
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 293,684,586
Number of Sequences: 355925
Number of extensions: 4035410
Number of successful extensions: 32845
Number of sequences better than 1.0e-020: 21
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 9058164360
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)