TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ7h03.xg.2.1
(487 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT638590.1|DT638590 EST1153521 Normalized pine embryo li... 109 1e-037
gb|DT631539.1|DT631539 EST1146470 Normalized pine embryo li... 109 1e-037
gb|DR116719.1|DR116719 RTMG1_2_H06.b1_A029 Roots minus magn... 109 1e-037
gb|DR116804.1|DR116804 RTMG1_2_H06.g1_A029 Roots minus magn... 109 1e-037
gb|DR081137.1|DR081137 RTFEPL1_27_E02.g1_A029 Roots plus ad... 109 1e-037
gb|DR695125.1|DR695125 EST1085218 Normalized pine embryo li... 109 1e-037
gb|DR683816.1|DR683816 EST1073892 Normalized pine embryo li... 109 1e-037
gb|DR078300.1|DR078300 RTFEPL1_3_E07.b1_A029 Roots plus add... 109 1e-037
gb|DR012004.1|DR012004 HEAT1_9_A04.g1_A029 Root at 37 C for... 109 1e-037
gb|CX652552.1|CX652552 COLD1_59_G09.g1_A029 Root cold Pinus... 109 1e-037
gb|DR015949.1|DR015949 STRS1_6_E08.g1_A034 Shoot tip pitch ... 103 9e-036
gb|DR015870.1|DR015870 STRS1_6_E08.b1_A034 Shoot tip pitch ... 109 4e-035
gb|DR047460.1|DR047460 RTBOR1_1_E07.b1_A029 Roots plus adde... 109 4e-035
gb|DR694258.1|DR694258 EST1084349 Normalized pine embryo li... 109 4e-035
gb|CF390163.1|CF390163 RTDR2_12_E06.g1_A021 Loblolly pine r... 109 4e-035
gb|DR109623.1|DR109623 RTS1_3_C05.g1_A029 Roots minus sulfu... 109 3e-033
gb|CO199718.1|CO199718 GEO2_3_C05.b1_A032 Root gravitropism... 140 7e-033
gb|DR168155.1|DR168155 RTPHOS1_23_C06.g1_A029 Roots minus p... 109 4e-032
gb|DR023499.1|DR023499 STRS1_58_C09.b1_A034 Shoot tip pitch... 94 3e-030
gb|DR118198.1|DR118198 RTMG1_11_F01.g1_A029 Roots minus mag... 94 3e-030
gb|DR069276.1|DR069276 RTDK1_6_D02.b1_A029 Roots, dark Pinu... 94 3e-030
gb|DR116628.1|DR116628 RTMG1_1_F07.g1_A029 Roots minus magn... 94 3e-030
gb|DR167536.1|DR167536 RTPHOS1_19_A09.g1_A029 Roots minus p... 94 3e-030
gb|CO163300.1|CO163300 FLD1_40_E10.g1_A029 Root flooded Pin... 94 3e-030
gb|DR385412.1|DR385412 RTHG1_8_B08.g1_A029 Roots plus added... 94 3e-030
gb|CO367617.1|CO367617 RTK1_35_A06.g1_A029 Roots minus pota... 94 3e-030
gb|CO362139.1|CO362139 RTK1_1_B11.g1_A029 Roots minus potas... 94 3e-030
gb|CV034443.1|CV034443 RTNACL1_9_A04.b1_A029 Roots plus add... 94 3e-030
gb|CF669591.1|CF669591 RTCNT1_44_H07.g1_A029 Root control P... 94 3e-030
gb|CX648436.1|CX648436 COLD1_28_D09.g1_A029 Root cold Pinus... 94 3e-030
gb|CF664880.1|CF664880 RTCNT1_12_B07.g1_A029 Root control P... 94 3e-030
gb|CF391557.1|CF391557 RTDR3_9_D03.g1_A022 Loblolly pine ro... 94 3e-030
gb|CF478208.1|CF478208 RTWW3_19_E07.g1_A022 Well-watered lo... 94 3e-030
gb|CF672019.1|CF672019 RTCNT1_60_F11.g1_A029 Root control P... 94 3e-030
gb|DR019386.1|DR019386 STRS1_29_E03.g1_A034 Shoot tip pitch... 94 3e-030
gb|DR119006.1|DR119006 RTMG1_20_C03.g1_A029 Roots minus mag... 94 3e-030
gb|CF671501.1|CF671501 RTCNT1_57_B07.g1_A029 Root control P... 94 3e-030
gb|BX254534.1|BX254534 BX254534 Pinus pinaster differenciat... 94 3e-030
gb|CF475902.1|CF475902 RTWW2_15_G09.g1_A021 Well-watered lo... 94 3e-030
gb|BX250310.1|BX250310 BX250310 Pinus pinaster differenciat... 94 3e-030
gb|DR109640.1|DR109640 RTS1_3_E07.g1_A029 Roots minus sulfu... 94 3e-030
gb|CF395152.1|CF395152 RTDS2_10_E11.b1_A021 Drought-stresse... 94 3e-030
gb|DR020571.1|DR020571 STRS1_37_H07.g1_A034 Shoot tip pitch... 94 3e-030
gb|BX678800.1|BX678800 BX678800 RS Pinus pinaster cDNA clon... 94 3e-030
gb|DR745694.1|DR745694 RTCU1_31_E05.g1_A029 Roots plus adde... 94 3e-030
gb|CX653292.1|CX653292 COLD1_64_D11.g1_A029 Root cold Pinus... 109 6e-030
gb|CO163161.1|CO163161 FLD1_39_G12.g1_A029 Root flooded Pin... 96 9e-030
gb|CV035130.1|CV035130 RTNACL1_13_F12.g1_A029 Roots plus ad... 96 9e-030
gb|DR011028.1|DR011028 HEAT1_2_H06.g1_A029 Root at 37 C for... 96 9e-030
gb|CF477204.1|CF477204 RTWW3_6_C08.g1_A022 Well-watered lob... 96 9e-030
gb|CO368907.1|CO368907 RTK1_43_D10.g1_A029 Roots minus pota... 96 9e-030
gb|DR743246.1|DR743246 RTCU1_14_C05.g1_A029 Roots plus adde... 96 9e-030
gb|DR694175.1|DR694175 EST1084265 Normalized pine embryo li... 92 2e-029
gb|DT638620.1|DT638620 EST1153551 Normalized pine embryo li... 92 2e-029
gb|BE520108.1|BE520108 NXCI_016_H09_F NXCI (Nsf Xylem Compr... 96 2e-029
gb|BX678795.1|BX678795 BX678795 RS Pinus pinaster cDNA clon... 91 2e-029
gb|BX679950.1|BX679950 BX679950 RS Pinus pinaster cDNA clon... 91 3e-029
gb|DT638133.1|DT638133 EST1153064 Normalized pine embryo li... 92 6e-029
gb|DR693161.1|DR693161 EST1083249 Normalized pine embryo li... 92 6e-029
gb|CO368683.1|CO368683 RTK1_42_D09.b1_A029 Roots minus pota... 96 1e-028
gb|BQ698981.1|BQ698981 NXRV117_H02_F NXRV (Nsf Xylem Root w... 94 5e-028
gb|AW869996.1|AW869996 NXNV_120_G12_F Nsf Xylem Normal wood... 90 5e-028
gb|BE644138.1|BE644138 NXCI_054_H09_F NXCI (Nsf Xylem Compr... 109 6e-028
gb|CF672139.1|CF672139 RTCNT1_61_D05.g1_A029 Root control P... 86 6e-027
gb|BF518065.1|BF518065 NXSI_030_E12_F NXSI (Nsf Xylem Side ... 86 6e-027
gb|BF220863.1|BF220863 NXCI_155_A01_F NXCI (Nsf Xylem Compr... 96 3e-026
gb|BX678836.1|BX678836 BX678836 RS Pinus pinaster cDNA clon... 57 3e-026
gb|BF518064.1|BF518064 NXSI_030_E11_F NXSI (Nsf Xylem Side ... 86 6e-026
gb|CF389446.1|CF389446 RTDR2_7_D03.g1_A021 Loblolly pine ro... 109 8e-026
gb|DR078368.1|DR078368 RTFEPL1_3_E07.g1_A029 Roots plus add... 69 1e-025
gb|BE496519.1|BE496519 NXCI_020_A11_F NXCI (Nsf Xylem Compr... 82 2e-025
gb|DR744517.1|DR744517 RTCU1_23_B05.b1_A029 Roots plus adde... 68 3e-025
gb|DR072364.1|DR072364 RTDK1_25_G03.g1_A029 Roots, dark Pin... 94 5e-025
gb|CX651270.1|CX651270 COLD1_51_F10.b1_A029 Root cold Pinus... 85 7e-025
gb|CO160922.1|CO160922 FLD1_25_B04.g1_A029 Root flooded Pin... 94 1e-024
gb|BX681492.1|BX681492 BX681492 RS Pinus pinaster cDNA clon... 75 2e-024
gb|AA556813.1|AA556813 655 Loblolly pine C Pinus taeda cDNA... 77 3e-024
gb|BX250799.1|BX250799 BX250799 Pinus pinaster differenciat... 109 2e-023
gb|CO159320.1|CO159320 FLD1_12_H01.g1_A029 Root flooded Pin... 109 2e-023
gb|BM903420.1|BM903420 NXRV_041_C08_F NXRV (Nsf Xylem Root ... 75 4e-023
gb|BQ700392.1|BQ700392 NXRV105_A11_F NXRV (Nsf Xylem Root w... 94 8e-023
gb|DR069340.1|DR069340 RTDK1_6_D02.g1_A029 Roots, dark Pinu... 69 1e-022
gb|DR019318.1|DR019318 STRS1_29_E03.b1_A034 Shoot tip pitch... 66 7e-022
gb|BQ701711.1|BQ701711 NXSI_118_G02_F NXSI (Nsf Xylem Side ... 103 1e-021
gb|DR078441.1|DR078441 RTFEPL1_4_E07.b1_A029 Roots plus add... 100 5e-021
gb|CF399609.1|CF399609 RTDS3_26_E02.g1_A022 Drought-stresse... 75 6e-021
gb|DR058934.1|DR058934 RTNIT1_14_F04.g1_A029 Roots minus ni... 66 9e-021
gb|DR059266.1|DR059266 RTNIT1_16_E05.g1_A029 Roots minus ni... 66 9e-021
>gb|DT638590.1|DT638590 EST1153521 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHH03 3' end, mRNA sequence
Length = 841
Score = 109 bits (232), Expect(2) = 1e-037
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = +2 / +3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+FTGTQ C CDK +D L +YHK CF HCKG L +YSSM LYCK H
Sbjct: 375 AFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKPH 554
Query: 251 FEQLFKETGSFSKNF 295
F+QLF+E+G+F+KNF
Sbjct: 555 FDQLFRESGNFNKNF 599
Score = 67.0 bits (140), Expect(2) = 1e-037
Identities = 27/50 (54%), Positives = 32/50 (64%)
Frame = +2 / +3
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
+TR+PSK+S FSGT C KT YPLE +T+E SYHK SHGG
Sbjct: 645 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHKSCFTCSHGG 794
>gb|DT631539.1|DT631539 EST1146470 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF984 3' end, mRNA sequence
Length = 815
Score = 109 bits (232), Expect(2) = 1e-037
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = +2 / +1
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+FTGTQ C CDK +D L +YHK CF HCKG L +YSSM LYCK H
Sbjct: 316 AFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKPH 495
Query: 251 FEQLFKETGSFSKNF 295
F+QLF+E+G+F+KNF
Sbjct: 496 FDQLFRESGNFNKNF 540
Score = 67.0 bits (140), Expect(2) = 1e-037
Identities = 27/50 (54%), Positives = 32/50 (64%)
Frame = +2 / +1
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
+TR+PSK+S FSGT C KT YPLE +T+E SYHK SHGG
Sbjct: 586 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHKSCFTCSHGG 735
>gb|DR116719.1|DR116719 RTMG1_2_H06.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_2_H06_A029 3', mRNA sequence
Length = 846
Score = 109 bits (232), Expect(2) = 1e-037
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = +2 / +1
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+FTGTQ C CDK +D L +YHK CF HCKG L +YSSM LYCK H
Sbjct: 88 AFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKPH 267
Query: 251 FEQLFKETGSFSKNF 295
F+QLF+E+G+F+KNF
Sbjct: 268 FDQLFRESGNFNKNF 312
Score = 66.6 bits (139), Expect(2) = 1e-037
Identities = 27/50 (54%), Positives = 32/50 (64%)
Frame = +2 / +1
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
+TR+PSK+S FSGT C KT YPLE +T+E SYHK SHGG
Sbjct: 358 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHKSCFRCSHGG 507
>gb|DR116804.1|DR116804 RTMG1_2_H06.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_2_H06_A029 5', mRNA sequence
Length = 838
Score = 109 bits (232), Expect(2) = 1e-037
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = +2 / +3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+FTGTQ C CDK +D L +YHK CF HCKG L +YSSM LYCK H
Sbjct: 357 AFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKPH 536
Query: 251 FEQLFKETGSFSKNF 295
F+QLF+E+G+F+KNF
Sbjct: 537 FDQLFRESGNFNKNF 581
Score = 66.6 bits (139), Expect(2) = 1e-037
Identities = 27/50 (54%), Positives = 32/50 (64%)
Frame = +2 / +3
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
+TR+PSK+S FSGT C KT YPLE +T+E SYHK SHGG
Sbjct: 627 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHKSCFRCSHGG 776
>gb|DR081137.1|DR081137 RTFEPL1_27_E02.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_27_E02_A029 5', mRNA sequence
Length = 821
Score = 109 bits (232), Expect(2) = 1e-037
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = +2 / -3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+FTGTQ C CDK +D L +YHK CF HCKG L +YSSM LYCK H
Sbjct: 819 AFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKPH 640
Query: 251 FEQLFKETGSFSKNF 295
F+QLF+E+G+F+KNF
Sbjct: 639 FDQLFRESGNFNKNF 595
Score = 66.6 bits (139), Expect(2) = 1e-037
Identities = 27/50 (54%), Positives = 32/50 (64%)
Frame = +2 / -3
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
+TR+PSK+S FSGT C KT YPLE +T+E SYHK SHGG
Sbjct: 549 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHKSCFRCSHGG 400
>gb|DR695125.1|DR695125 EST1085218 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEK79 3' end, mRNA sequence
Length = 820
Score = 109 bits (232), Expect(2) = 1e-037
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = +2 / +3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+FTGTQ C CDK +D L +YHK CF HCKG L +YSSM LYCK H
Sbjct: 186 AFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKPH 365
Query: 251 FEQLFKETGSFSKNF 295
F+QLF+E+G+F+KNF
Sbjct: 366 FDQLFRESGNFNKNF 410
Score = 66.6 bits (139), Expect(2) = 1e-037
Identities = 27/50 (54%), Positives = 32/50 (64%)
Frame = +2 / +3
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
+TR+PSK+S FSGT C KT YPLE +T+E SYHK SHGG
Sbjct: 456 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHKSCFRCSHGG 605
>gb|DR683816.1|DR683816 EST1073892 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAL61 3' end, mRNA sequence
Length = 803
Score = 109 bits (232), Expect(2) = 1e-037
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = +2 / +2
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+FTGTQ C CDK +D L +YHK CF HCKG L +YSSM LYCK H
Sbjct: 308 AFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKPH 487
Query: 251 FEQLFKETGSFSKNF 295
F+QLF+E+G+F+KNF
Sbjct: 488 FDQLFRESGNFNKNF 532
Score = 66.6 bits (139), Expect(2) = 1e-037
Identities = 27/50 (54%), Positives = 32/50 (64%)
Frame = +2 / +2
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
+TR+PSK+S FSGT C KT YPLE +T+E SYHK SHGG
Sbjct: 578 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHKSCFMCSHGG 727
>gb|DR078300.1|DR078300 RTFEPL1_3_E07.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_3_E07_A029 3', mRNA sequence
Length = 783
Score = 109 bits (232), Expect(2) = 1e-037
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = +2 / -2
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+FTGTQ C CDK +D L +YHK CF HCKG L +YSSM LYCK H
Sbjct: 578 AFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKPH 399
Query: 251 FEQLFKETGSFSKNF 295
F+QLF+E+G+F+KNF
Sbjct: 398 FDQLFRESGNFNKNF 354
Score = 66.6 bits (139), Expect(2) = 1e-037
Identities = 27/50 (54%), Positives = 32/50 (64%)
Frame = +2 / -2
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
+TR+PSK+S FSGT C KT YPLE +T+E SYHK SHGG
Sbjct: 308 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHKSCFRCSHGG 159
>gb|DR012004.1|DR012004 HEAT1_9_A04.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_9_A04_A029 5', mRNA sequence
Length = 663
Score = 109 bits (232), Expect(2) = 1e-037
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = +2 / +3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+FTGTQ C CDK +D L +YHK CF HCKG L +YSSM LYCK H
Sbjct: 138 AFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKPH 317
Query: 251 FEQLFKETGSFSKNF 295
F+QLF+E+G+F+KNF
Sbjct: 318 FDQLFRESGNFNKNF 362
Score = 66.6 bits (139), Expect(2) = 1e-037
Identities = 27/50 (54%), Positives = 32/50 (64%)
Frame = +2 / +3
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
+TR+PSK+S FSGT C KT YPLE +T+E SYHK SHGG
Sbjct: 408 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHKSCFRCSHGG 557
>gb|CX652552.1|CX652552 COLD1_59_G09.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_59_G09_A029 5', mRNA sequence
Length = 542
Score = 109 bits (232), Expect(2) = 1e-037
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = +2 / +3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+FTGTQ C CDK +D L +YHK CF HCKG L +YSSM LYCK H
Sbjct: 36 AFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKPH 215
Query: 251 FEQLFKETGSFSKNF 295
F+QLF+E+G+F+KNF
Sbjct: 216 FDQLFRESGNFNKNF 260
Score = 66.6 bits (139), Expect(2) = 1e-037
Identities = 27/50 (54%), Positives = 32/50 (64%)
Frame = +2 / +3
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
+TR+PSK+S FSGT C KT YPLE +T+E SYHK SHGG
Sbjct: 306 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHKSCFRCSHGG 455
>gb|DR015949.1|DR015949 STRS1_6_E08.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_6_E08_A034 5', mRNA sequence
Length = 826
Score = 103 bits (219), Expect(2) = 9e-036
Identities = 38/71 (53%), Positives = 46/71 (64%)
Frame = +2 / -3
Query: 83 TQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTHFEQL 262
TQ C CDK +D L +YHKTCF HCKG L +YSSM LYCK HF+QL
Sbjct: 824 TQQKCKACDKTVYFVDQLSADGVSYHKTCFRCNHCKGTLKLSNYSSMEGVLYCKPHFDQL 645
Query: 263 FKETGSFSKNF 295
F+E+G+F+KNF
Sbjct: 644 FRESGNFNKNF 612
Score = 66.6 bits (139), Expect(2) = 9e-036
Identities = 27/50 (54%), Positives = 32/50 (64%)
Frame = +2 / -3
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
+TR+PSK+S FSGT C KT YPLE +T+E SYHK SHGG
Sbjct: 566 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHKSCFRCSHGG 417
>gb|DR015870.1|DR015870 STRS1_6_E08.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_6_E08_A034 3', mRNA sequence
Length = 880
Score = 109 bits (232), Expect(2) = 4e-035
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = +2 / -3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+FTGTQ C CDK +D L +YHK CF HCKG L +YSSM LYCK H
Sbjct: 404 AFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKPH 225
Query: 251 FEQLFKETGSFSKNF 295
F+QLF+E+G+F+KNF
Sbjct: 224 FDQLFRESGNFNKNF 180
Score = 58.3 bits (121), Expect(2) = 4e-035
Identities = 23/41 (56%), Positives = 28/41 (68%)
Frame = +2 / -3
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHK 451
+TR+PSK+S FSGT C KT YPLE +T+E SYHK
Sbjct: 134 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHK 12
>gb|DR047460.1|DR047460 RTBOR1_1_E07.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_1_E07_A029 3', mRNA sequence
Length = 767
Score = 109 bits (232), Expect(2) = 4e-035
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = +2 / -3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+FTGTQ C CDK +D L +YHK CF HCKG L +YSSM LYCK H
Sbjct: 402 AFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKPH 223
Query: 251 FEQLFKETGSFSKNF 295
F+QLF+E+G+F+KNF
Sbjct: 222 FDQLFRESGNFNKNF 178
Score = 58.3 bits (121), Expect(2) = 4e-035
Identities = 23/41 (56%), Positives = 28/41 (68%)
Frame = +2 / -3
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHK 451
+TR+PSK+S FSGT C KT YPLE +T+E SYHK
Sbjct: 132 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHK 10
>gb|DR694258.1|DR694258 EST1084349 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEA11 3' end, mRNA sequence
Length = 766
Score = 109 bits (232), Expect(2) = 4e-035
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = +2 / +1
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+FTGTQ C CDK +D L +YHK CF HCKG L +YSSM LYCK H
Sbjct: 367 AFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKPH 546
Query: 251 FEQLFKETGSFSKNF 295
F+QLF+E+G+F+KNF
Sbjct: 547 FDQLFRESGNFNKNF 591
Score = 58.3 bits (121), Expect(2) = 4e-035
Identities = 23/41 (56%), Positives = 28/41 (68%)
Frame = +2 / +1
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHK 451
+TR+PSK+S FSGT C KT YPLE +T+E SYHK
Sbjct: 637 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHK 759
>gb|CF390163.1|CF390163 RTDR2_12_E06.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_12_E06_A021 5', mRNA
sequence
Length = 671
Score = 109 bits (232), Expect(2) = 4e-035
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = +2 / +2
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+FTGTQ C CDK +D L +YHK CF HCKG L +YSSM LYCK H
Sbjct: 272 AFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKPH 451
Query: 251 FEQLFKETGSFSKNF 295
F+QLF+E+G+F+KNF
Sbjct: 452 FDQLFRESGNFNKNF 496
Score = 58.3 bits (121), Expect(2) = 4e-035
Identities = 23/41 (56%), Positives = 28/41 (68%)
Frame = +2 / +2
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHK 451
+TR+PSK+S FSGT C KT YPLE +T+E SYHK
Sbjct: 542 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHK 664
>gb|DR109623.1|DR109623 RTS1_3_C05.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_3_C05_A029 5', mRNA sequence
Length = 762
Score = 109 bits (232), Expect(2) = 3e-033
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = +2 / +1
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+FTGTQ C CDK +D L +YHK CF HCKG L +YSSM LYCK H
Sbjct: 376 AFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKPH 555
Query: 251 FEQLFKETGSFSKNF 295
F+QLF+E+G+F+KNF
Sbjct: 556 FDQLFRESGNFNKNF 600
Score = 52.4 bits (108), Expect(2) = 3e-033
Identities = 21/39 (53%), Positives = 26/39 (66%)
Frame = +2 / +1
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSY 445
+TR+PSK+S FSGT C KT YPLE +T+E SY
Sbjct: 646 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSY 762
>gb|CO199718.1|CO199718 GEO2_3_C05.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_3_C05_A032 3', mRNA sequence
Length = 901
Score = 140 bits (300), Expect = 7e-033
Identities = 55/136 (40%), Positives = 71/136 (52%)
Frame = +2 / -3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GTQ C C+K +D L +HK CF HC G L +YSS LYCK H
Sbjct: 746 AFAGTQQKCKACEKTVYVVDQLTADGSVFHKACFRCHHCNGTLKLSNYSSFEGVLYCKPH 567
Query: 251 FEQLFKETGSFSKNFTPXXKSSDKXXLTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTL 430
F+QLFK TGS K+F + P+++S+ FSGT AC TVYP+E +++
Sbjct: 566 FDQLFKRTGSLDKSFVAVKNEKLNDGEIKTPNRVSALFSGTQEKCLACGNTVYPIEKVSV 387
Query: 431 EXXSYHKXXXXXSHGG 478
E YHK HGG
Sbjct: 386 EGVGYHKACFKCMHGG 339
>gb|DR168155.1|DR168155 RTPHOS1_23_C06.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_23_C06_A029 5', mRNA sequence
Length = 612
Score = 109 bits (232), Expect(2) = 4e-032
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = +2 / +3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+FTGTQ C CDK +D L +YHK CF HCKG L +YSSM LYCK H
Sbjct: 234 AFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKPH 413
Query: 251 FEQLFKETGSFSKNF 295
F+QLF+E+G+F+KNF
Sbjct: 414 FDQLFRESGNFNKNF 458
Score = 48.3 bits (99), Expect(2) = 4e-032
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = +2 / +3
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLE 433
+TR+PSK+S FSGT C KT YPLE +T+E
Sbjct: 504 MTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVE 608
>gb|DR023499.1|DR023499 STRS1_58_C09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_58_C09_A034 3', mRNA sequence
Length = 835
Score = 94.1 bits (199), Expect(2) = 3e-030
Identities = 35/82 (42%), Positives = 45/82 (54%)
Frame = +2 / -1
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GT C C+K +D L +HK+CF HC G L +YSS LYCK H
Sbjct: 739 AFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPH 560
Query: 251 FEQLFKETGSFSKNFTPXXKSS 316
F+QLFK TGS K+F ++S
Sbjct: 559 FDQLFKRTGSLDKSFEAIPRAS 494
Score = 57.4 bits (119), Expect(2) = 3e-030
Identities = 22/50 (44%), Positives = 31/50 (62%)
Frame = +2 / -1
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
+ R PS++S+ FSGT AC KTVYP+E + ++ SYH+ HGG
Sbjct: 466 VNRTPSRVSALFSGTQDKCVACGKTVYPIEKVVVDGTSYHRPCFKCCHGG 317
>gb|DR118198.1|DR118198 RTMG1_11_F01.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_11_F01_A029 5', mRNA sequence
Length = 654
Score = 94.1 bits (199), Expect(2) = 3e-030
Identities = 35/82 (42%), Positives = 45/82 (54%)
Frame = +2 / +1
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GT C C+K +D L +HK+CF HC G L +YSS LYCK H
Sbjct: 157 AFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPH 336
Query: 251 FEQLFKETGSFSKNFTPXXKSS 316
F+QLFK TGS K+F ++S
Sbjct: 337 FDQLFKRTGSLDKSFEAIPRAS 402
Score = 57.4 bits (119), Expect(2) = 3e-030
Identities = 22/50 (44%), Positives = 31/50 (62%)
Frame = +2 / +1
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
+ R PS++S+ FSGT AC KTVYP+E + ++ SYH+ HGG
Sbjct: 430 VNRTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGG 579
>gb|DR069276.1|DR069276 RTDK1_6_D02.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_6_D02_A029 3', mRNA sequence
Length = 894
Score = 94.1 bits (199), Expect(2) = 3e-030
Identities = 35/82 (42%), Positives = 45/82 (54%)
Frame = +2 / -1
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GT C C+K +D L +HK+CF HC G L +YSS LYCK H
Sbjct: 741 AFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPH 562
Query: 251 FEQLFKETGSFSKNFTPXXKSS 316
F+QLFK TGS K+F ++S
Sbjct: 561 FDQLFKRTGSLDKSFEAIPRAS 496
Score = 57.0 bits (118), Expect(2) = 3e-030
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +2 / -1
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
R PS++S+ FSGT AC KTVYP+E + ++ SYH+ HGG
Sbjct: 465 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGG 322
>gb|DR116628.1|DR116628 RTMG1_1_F07.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_1_F07_A029 5', mRNA sequence
Length = 869
Score = 94.1 bits (199), Expect(2) = 3e-030
Identities = 35/82 (42%), Positives = 45/82 (54%)
Frame = +2 / +3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GT C C+K +D L +HK+CF HC G L +YSS LYCK H
Sbjct: 63 AFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPH 242
Query: 251 FEQLFKETGSFSKNFTPXXKSS 316
F+QLFK TGS K+F ++S
Sbjct: 243 FDQLFKRTGSLDKSFEAIPRAS 308
Score = 57.0 bits (118), Expect(2) = 3e-030
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +2 / +3
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
R PS++S+ FSGT AC KTVYP+E + ++ SYH+ HGG
Sbjct: 339 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGG 482
>gb|DR167536.1|DR167536 RTPHOS1_19_A09.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_19_A09_A029 5', mRNA sequence
Length = 847
Score = 94.1 bits (199), Expect(2) = 3e-030
Identities = 35/82 (42%), Positives = 45/82 (54%)
Frame = +2 / +3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GT C C+K +D L +HK+CF HC G L +YSS LYCK H
Sbjct: 102 AFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPH 281
Query: 251 FEQLFKETGSFSKNFTPXXKSS 316
F+QLFK TGS K+F ++S
Sbjct: 282 FDQLFKRTGSLDKSFEAIPRAS 347
Score = 57.0 bits (118), Expect(2) = 3e-030
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +2 / +3
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
R PS++S+ FSGT AC KTVYP+E + ++ SYH+ HGG
Sbjct: 378 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGG 521
>gb|CO163300.1|CO163300 FLD1_40_E10.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_40_E10_A029 5', mRNA sequence
Length = 834
Score = 94.1 bits (199), Expect(2) = 3e-030
Identities = 35/82 (42%), Positives = 45/82 (54%)
Frame = +2 / +1
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GT C C+K +D L +HK+CF HC G L +YSS LYCK H
Sbjct: 28 AFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPH 207
Query: 251 FEQLFKETGSFSKNFTPXXKSS 316
F+QLFK TGS K+F ++S
Sbjct: 208 FDQLFKRTGSLDKSFEAIPRAS 273
Score = 57.0 bits (118), Expect(2) = 3e-030
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +2 / +1
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
R PS++S+ FSGT AC KTVYP+E + ++ SYH+ HGG
Sbjct: 304 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGG 447
>gb|DR385412.1|DR385412 RTHG1_8_B08.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_8_B08_A029 5', mRNA sequence
Length = 816
Score = 94.1 bits (199), Expect(2) = 3e-030
Identities = 35/82 (42%), Positives = 45/82 (54%)
Frame = +2 / +3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GT C C+K +D L +HK+CF HC G L +YSS LYCK H
Sbjct: 63 AFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPH 242
Query: 251 FEQLFKETGSFSKNFTPXXKSS 316
F+QLFK TGS K+F ++S
Sbjct: 243 FDQLFKRTGSLDKSFEAIPRAS 308
Score = 57.0 bits (118), Expect(2) = 3e-030
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +2 / +3
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
R PS++S+ FSGT AC KTVYP+E + ++ SYH+ HGG
Sbjct: 339 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGG 482
>gb|CO367617.1|CO367617 RTK1_35_A06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_35_A06_A029 5', mRNA sequence
Length = 799
Score = 94.1 bits (199), Expect(2) = 3e-030
Identities = 35/82 (42%), Positives = 45/82 (54%)
Frame = +2 / +3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GT C C+K +D L +HK+CF HC G L +YSS LYCK H
Sbjct: 57 AFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPH 236
Query: 251 FEQLFKETGSFSKNFTPXXKSS 316
F+QLFK TGS K+F ++S
Sbjct: 237 FDQLFKRTGSLDKSFEAIPRAS 302
Score = 57.0 bits (118), Expect(2) = 3e-030
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +2 / +3
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
R PS++S+ FSGT AC KTVYP+E + ++ SYH+ HGG
Sbjct: 333 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGG 476
>gb|CO362139.1|CO362139 RTK1_1_B11.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_1_B11_A029 5', mRNA sequence
Length = 788
Score = 94.1 bits (199), Expect(2) = 3e-030
Identities = 35/82 (42%), Positives = 45/82 (54%)
Frame = +2 / +2
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GT C C+K +D L +HK+CF HC G L +YSS LYCK H
Sbjct: 98 AFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPH 277
Query: 251 FEQLFKETGSFSKNFTPXXKSS 316
F+QLFK TGS K+F ++S
Sbjct: 278 FDQLFKRTGSLDKSFEAIPRAS 343
Score = 57.0 bits (118), Expect(2) = 3e-030
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +2 / +2
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
R PS++S+ FSGT AC KTVYP+E + ++ SYH+ HGG
Sbjct: 374 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGG 517
>gb|CV034443.1|CV034443 RTNACL1_9_A04.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_9_A04_A029 3', mRNA sequence
Length = 781
Score = 94.1 bits (199), Expect(2) = 3e-030
Identities = 35/82 (42%), Positives = 45/82 (54%)
Frame = +2 / -3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GT C C+K +D L +HK+CF HC G L +YSS LYCK H
Sbjct: 629 AFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPH 450
Query: 251 FEQLFKETGSFSKNFTPXXKSS 316
F+QLFK TGS K+F ++S
Sbjct: 449 FDQLFKRTGSLDKSFEAIPRAS 384
Score = 57.0 bits (118), Expect(2) = 3e-030
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +2 / -3
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
R PS++S+ FSGT AC KTVYP+E + ++ SYH+ HGG
Sbjct: 353 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGG 210
>gb|CF669591.1|CF669591 RTCNT1_44_H07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_44_H07_A029 5', mRNA sequence
Length = 775
Score = 94.1 bits (199), Expect(2) = 3e-030
Identities = 35/82 (42%), Positives = 45/82 (54%)
Frame = +2 / +2
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GT C C+K +D L +HK+CF HC G L +YSS LYCK H
Sbjct: 62 AFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPH 241
Query: 251 FEQLFKETGSFSKNFTPXXKSS 316
F+QLFK TGS K+F ++S
Sbjct: 242 FDQLFKRTGSLDKSFEAIPRAS 307
Score = 57.0 bits (118), Expect(2) = 3e-030
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +2 / +2
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
R PS++S+ FSGT AC KTVYP+E + ++ SYH+ HGG
Sbjct: 338 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGG 481
>gb|CX648436.1|CX648436 COLD1_28_D09.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_28_D09_A029 5', mRNA sequence
Length = 772
Score = 94.1 bits (199), Expect(2) = 3e-030
Identities = 35/82 (42%), Positives = 45/82 (54%)
Frame = +2 / +3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GT C C+K +D L +HK+CF HC G L +YSS LYCK H
Sbjct: 63 AFAGTTHKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPH 242
Query: 251 FEQLFKETGSFSKNFTPXXKSS 316
F+QLFK TGS K+F ++S
Sbjct: 243 FDQLFKRTGSLDKSFEAIPRAS 308
Score = 57.0 bits (118), Expect(2) = 3e-030
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +2 / +3
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
R PS++S+ FSGT AC KTVYP+E + ++ SYH+ HGG
Sbjct: 339 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGG 482
>gb|CF664880.1|CF664880 RTCNT1_12_B07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_12_B07_A029 5', mRNA sequence
Length = 767
Score = 94.1 bits (199), Expect(2) = 3e-030
Identities = 35/82 (42%), Positives = 45/82 (54%)
Frame = +2 / +3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GT C C+K +D L +HK+CF HC G L +YSS LYCK H
Sbjct: 117 AFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPH 296
Query: 251 FEQLFKETGSFSKNFTPXXKSS 316
F+QLFK TGS K+F ++S
Sbjct: 297 FDQLFKRTGSLDKSFEAIPRAS 362
Score = 57.0 bits (118), Expect(2) = 3e-030
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +2 / +3
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
R PS++S+ FSGT AC KTVYP+E + ++ SYH+ HGG
Sbjct: 393 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGG 536
>gb|CF391557.1|CF391557 RTDR3_9_D03.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_9_D03_A022 5', mRNA
sequence
Length = 756
Score = 94.1 bits (199), Expect(2) = 3e-030
Identities = 35/82 (42%), Positives = 45/82 (54%)
Frame = +2 / +3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GT C C+K +D L +HK+CF HC G L +YSS LYCK H
Sbjct: 102 AFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPH 281
Query: 251 FEQLFKETGSFSKNFTPXXKSS 316
F+QLFK TGS K+F ++S
Sbjct: 282 FDQLFKRTGSLDKSFEAIPRAS 347
Score = 57.0 bits (118), Expect(2) = 3e-030
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +2 / +3
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
R PS++S+ FSGT AC KTVYP+E + ++ SYH+ HGG
Sbjct: 378 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGG 521
>gb|CF478208.1|CF478208 RTWW3_19_E07.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_19_E07_A022 5', mRNA sequence
Length = 752
Score = 94.1 bits (199), Expect(2) = 3e-030
Identities = 35/82 (42%), Positives = 45/82 (54%)
Frame = +2 / +1
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GT C C+K +D L +HK+CF HC G L +YSS LYCK H
Sbjct: 43 AFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPH 222
Query: 251 FEQLFKETGSFSKNFTPXXKSS 316
F+QLFK TGS K+F ++S
Sbjct: 223 FDQLFKRTGSLDKSFEAIPRAS 288
Score = 57.0 bits (118), Expect(2) = 3e-030
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +2 / +1
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
R PS++S+ FSGT AC KTVYP+E + ++ SYH+ HGG
Sbjct: 319 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGG 462
>gb|CF672019.1|CF672019 RTCNT1_60_F11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_60_F11_A029 5', mRNA sequence
Length = 744
Score = 94.1 bits (199), Expect(2) = 3e-030
Identities = 35/82 (42%), Positives = 45/82 (54%)
Frame = +2 / +3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GT C C+K +D L +HK+CF HC G L +YSS LYCK H
Sbjct: 90 AFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPH 269
Query: 251 FEQLFKETGSFSKNFTPXXKSS 316
F+QLFK TGS K+F ++S
Sbjct: 270 FDQLFKRTGSLDKSFEAIPRAS 335
Score = 57.0 bits (118), Expect(2) = 3e-030
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +2 / +3
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
R PS++S+ FSGT AC KTVYP+E + ++ SYH+ HGG
Sbjct: 366 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGG 509
>gb|DR019386.1|DR019386 STRS1_29_E03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_29_E03_A034 5', mRNA sequence
Length = 745
Score = 94.1 bits (199), Expect(2) = 3e-030
Identities = 35/82 (42%), Positives = 45/82 (54%)
Frame = +2 / +3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GT C C+K +D L +HK+CF HC G L +YSS LYCK H
Sbjct: 45 AFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPH 224
Query: 251 FEQLFKETGSFSKNFTPXXKSS 316
F+QLFK TGS K+F ++S
Sbjct: 225 FDQLFKRTGSLDKSFEAIPRAS 290
Score = 57.0 bits (118), Expect(2) = 3e-030
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +2 / +3
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
R PS++S+ FSGT AC KTVYP+E + ++ SYH+ HGG
Sbjct: 321 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGG 464
>gb|DR119006.1|DR119006 RTMG1_20_C03.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_20_C03_A029 5', mRNA sequence
Length = 746
Score = 94.1 bits (199), Expect(2) = 3e-030
Identities = 35/82 (42%), Positives = 45/82 (54%)
Frame = +2 / +3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GT C C+K +D L +HK+CF HC G L +YSS LYCK H
Sbjct: 78 AFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPH 257
Query: 251 FEQLFKETGSFSKNFTPXXKSS 316
F+QLFK TGS K+F ++S
Sbjct: 258 FDQLFKRTGSLDKSFEAIPRAS 323
Score = 57.0 bits (118), Expect(2) = 3e-030
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +2 / +3
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
R PS++S+ FSGT AC KTVYP+E + ++ SYH+ HGG
Sbjct: 354 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGG 497
>gb|CF671501.1|CF671501 RTCNT1_57_B07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_57_B07_A029 5', mRNA sequence
Length = 723
Score = 94.1 bits (199), Expect(2) = 3e-030
Identities = 35/82 (42%), Positives = 45/82 (54%)
Frame = +2 / +3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GT C C+K +D L +HK+CF HC G L +YSS LYCK H
Sbjct: 12 AFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPH 191
Query: 251 FEQLFKETGSFSKNFTPXXKSS 316
F+QLFK TGS K+F ++S
Sbjct: 192 FDQLFKRTGSLDKSFEAIPRAS 257
Score = 57.0 bits (118), Expect(2) = 3e-030
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +2 / +3
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
R PS++S+ FSGT AC KTVYP+E + ++ SYH+ HGG
Sbjct: 288 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGG 431
>gb|BX254534.1|BX254534 BX254534 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP099G08 similar to POLLEN SPECIFIC PROTEIN
SF3, mRNA sequence
Length = 709
Score = 94.1 bits (199), Expect(2) = 3e-030
Identities = 35/82 (42%), Positives = 45/82 (54%)
Frame = +2 / +2
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GT C C+K +D L +HK+CF HC G L +YSS LYCK H
Sbjct: 122 AFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPH 301
Query: 251 FEQLFKETGSFSKNFTPXXKSS 316
F+QLFK TGS K+F ++S
Sbjct: 302 FDQLFKRTGSLDKSFEAIPRAS 367
Score = 57.0 bits (118), Expect(2) = 3e-030
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +2 / +2
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
R PS++S+ FSGT AC KTVYP+E + ++ SYH+ HGG
Sbjct: 398 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGG 541
>gb|CF475902.1|CF475902 RTWW2_15_G09.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_15_G09_A021 5', mRNA sequence
Length = 678
Score = 94.1 bits (199), Expect(2) = 3e-030
Identities = 35/82 (42%), Positives = 45/82 (54%)
Frame = +2 / +1
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GT C C+K +D L +HK+CF HC G L +YSS LYCK H
Sbjct: 157 AFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPH 336
Query: 251 FEQLFKETGSFSKNFTPXXKSS 316
F+QLFK TGS K+F ++S
Sbjct: 337 FDQLFKRTGSLDKSFEAIPRAS 402
Score = 57.0 bits (118), Expect(2) = 3e-030
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +2 / +1
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
R PS++S+ FSGT AC KTVYP+E + ++ SYH+ HGG
Sbjct: 433 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGG 576
>gb|BX250310.1|BX250310 BX250310 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP035C01 similar to POLLEN SPECIFIC PROTEIN
SF3, mRNA sequence
Length = 666
Score = 94.1 bits (199), Expect(2) = 3e-030
Identities = 35/82 (42%), Positives = 45/82 (54%)
Frame = +2 / +3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GT C C+K +D L +HK+CF HC G L +YSS LYCK H
Sbjct: 204 AFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPH 383
Query: 251 FEQLFKETGSFSKNFTPXXKSS 316
F+QLFK TGS K+F ++S
Sbjct: 384 FDQLFKRTGSLDKSFEAIPRAS 449
Score = 57.0 bits (118), Expect(2) = 3e-030
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +2 / +3
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
R PS++S+ FSGT AC KTVYP+E + ++ SYH+ HGG
Sbjct: 480 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGG 623
>gb|DR109640.1|DR109640 RTS1_3_E07.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_3_E07_A029 5', mRNA sequence
Length = 642
Score = 94.1 bits (199), Expect(2) = 3e-030
Identities = 35/82 (42%), Positives = 45/82 (54%)
Frame = +2 / +2
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GT C C+K +D L +HK+CF HC G L +YSS LYCK H
Sbjct: 11 AFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPH 190
Query: 251 FEQLFKETGSFSKNFTPXXKSS 316
F+QLFK TGS K+F ++S
Sbjct: 191 FDQLFKRTGSLDKSFEAIPRAS 256
Score = 57.0 bits (118), Expect(2) = 3e-030
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +2 / +2
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
R PS++S+ FSGT AC KTVYP+E + ++ SYH+ HGG
Sbjct: 287 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGG 430
>gb|CF395152.1|CF395152 RTDS2_10_E11.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_10_E11_A021 3', mRNA sequence
Length = 639
Score = 94.1 bits (199), Expect(2) = 3e-030
Identities = 35/82 (42%), Positives = 45/82 (54%)
Frame = +2 / -1
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GT C C+K +D L +HK+CF HC G L +YSS LYCK H
Sbjct: 525 AFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPH 346
Query: 251 FEQLFKETGSFSKNFTPXXKSS 316
F+QLFK TGS K+F ++S
Sbjct: 345 FDQLFKRTGSLDKSFEAIPRAS 280
Score = 57.0 bits (118), Expect(2) = 3e-030
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +2 / -1
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
R PS++S+ FSGT AC KTVYP+E + ++ SYH+ HGG
Sbjct: 249 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGG 106
>gb|DR020571.1|DR020571 STRS1_37_H07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_37_H07_A034 5', mRNA sequence
Length = 623
Score = 94.1 bits (199), Expect(2) = 3e-030
Identities = 35/82 (42%), Positives = 45/82 (54%)
Frame = +2 / +3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GT C C+K +D L +HK+CF HC G L +YSS LYCK H
Sbjct: 117 AFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPH 296
Query: 251 FEQLFKETGSFSKNFTPXXKSS 316
F+QLFK TGS K+F ++S
Sbjct: 297 FDQLFKRTGSLDKSFEAIPRAS 362
Score = 57.0 bits (118), Expect(2) = 3e-030
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +2 / +3
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
R PS++S+ FSGT AC KTVYP+E + ++ SYH+ HGG
Sbjct: 393 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGG 536
>gb|BX678800.1|BX678800 BX678800 RS Pinus pinaster cDNA clone RS15C09, mRNA sequence
Length = 598
Score = 94.1 bits (199), Expect(2) = 3e-030
Identities = 35/82 (42%), Positives = 45/82 (54%)
Frame = +2 / +3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GT C C+K +D L +HK+CF HC G L +YSS LYCK H
Sbjct: 9 AFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPH 188
Query: 251 FEQLFKETGSFSKNFTPXXKSS 316
F+QLFK TGS K+F ++S
Sbjct: 189 FDQLFKRTGSLDKSFEAIPRAS 254
Score = 57.0 bits (118), Expect(2) = 3e-030
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +2 / +3
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
R PS++S+ FSGT AC KTVYP+E + ++ SYH+ HGG
Sbjct: 285 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGG 428
>gb|DR745694.1|DR745694 RTCU1_31_E05.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_31_E05_A029 5', mRNA sequence
Length = 572
Score = 94.1 bits (199), Expect(2) = 3e-030
Identities = 35/82 (42%), Positives = 45/82 (54%)
Frame = +2 / +1
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GT C C+K +D L +HK+CF HC G L +YSS LYCK H
Sbjct: 130 AFAGTTQKCKACEKTVYLVDQLTADNSVFHKSCFRCHHCNGTLKLSNYSSFEGVLYCKPH 309
Query: 251 FEQLFKETGSFSKNFTPXXKSS 316
F+QLFK TGS K+F ++S
Sbjct: 310 FDQLFKRTGSLDKSFEAIPRAS 375
Score = 57.0 bits (118), Expect(2) = 3e-030
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +2 / +1
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
R PS++S+ FSGT AC KTVYP+E + ++ SYH+ HGG
Sbjct: 406 RTPSRVSALFSGTQDKCVACGKTVYPIEKVAVDGTSYHRPCFKCCHGG 549
>gb|CX653292.1|CX653292 COLD1_64_D11.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_64_D11_A029 5', mRNA sequence
Length = 767
Score = 109 bits (232), Expect(2) = 6e-030
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = +2 / +2
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+FTGTQ C CDK +D L +YHK CF HCKG L +YSSM LYCK H
Sbjct: 410 AFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKPH 589
Query: 251 FEQLFKETGSFSKNF 295
F+QLF+E+G+F+KNF
Sbjct: 590 FDQLFRESGNFNKNF 634
Score = 40.9 bits (83), Expect(2) = 6e-030
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2 / +2
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPL 415
+TR+PSK+S FSGT C KT YPL
Sbjct: 680 MTRSPSKVSMMFSGTQDKCATCGKTAYPL 766
>gb|CO163161.1|CO163161 FLD1_39_G12.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_39_G12_A029 5', mRNA sequence
Length = 829
Score = 95.9 bits (203), Expect(2) = 9e-030
Identities = 36/81 (44%), Positives = 44/81 (54%)
Frame = +2 / +2
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GTQ C C+K +D L +HK CF HC G L +YSS LYCK H
Sbjct: 35 AFAGTQQKCKACEKTVYVVDQLTADGSVFHKACFRCHHCNGTLKLSNYSSFEGVLYCKPH 214
Query: 251 FEQLFKETGSFSKNFTPXXKS 313
F+QLFK TGS K+F K+
Sbjct: 215 FDQLFKRTGSLDKSFEGTPKA 277
Score = 53.8 bits (111), Expect(2) = 9e-030
Identities = 20/48 (41%), Positives = 29/48 (60%)
Frame = +2 / +2
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
+ P+++S+ FSGT AC TVYP+E +++E YHK HGG
Sbjct: 311 KTPNRVSALFSGTQEKCLACGNTVYPIEKVSVEGVGYHKACFKCMHGG 454
>gb|CV035130.1|CV035130 RTNACL1_13_F12.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_13_F12_A029 5', mRNA sequence
Length = 798
Score = 95.9 bits (203), Expect(2) = 9e-030
Identities = 36/81 (44%), Positives = 44/81 (54%)
Frame = +2 / +3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GTQ C C+K +D L +HK CF HC G L +YSS LYCK H
Sbjct: 54 AFAGTQQKCKACEKTVYVVDQLTADGSVFHKACFRCHHCNGTLKLSNYSSFEGVLYCKPH 233
Query: 251 FEQLFKETGSFSKNFTPXXKS 313
F+QLFK TGS K+F K+
Sbjct: 234 FDQLFKRTGSLDKSFEGTPKA 296
Score = 53.8 bits (111), Expect(2) = 9e-030
Identities = 20/48 (41%), Positives = 29/48 (60%)
Frame = +2 / +3
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
+ P+++S+ FSGT AC TVYP+E +++E YHK HGG
Sbjct: 330 KTPNRVSALFSGTQEKCLACGNTVYPIEKVSVEGVGYHKACFKCMHGG 473
>gb|DR011028.1|DR011028 HEAT1_2_H06.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_2_H06_A029 5', mRNA sequence
Length = 763
Score = 95.9 bits (203), Expect(2) = 9e-030
Identities = 36/81 (44%), Positives = 44/81 (54%)
Frame = +2 / +3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GTQ C C+K +D L +HK CF HC G L +YSS LYCK H
Sbjct: 138 AFAGTQQKCKACEKTVYVVDQLTADGSVFHKACFRCHHCNGTLKLSNYSSFEGVLYCKPH 317
Query: 251 FEQLFKETGSFSKNFTPXXKS 313
F+QLFK TGS K+F K+
Sbjct: 318 FDQLFKRTGSLDKSFEGTPKA 380
Score = 53.8 bits (111), Expect(2) = 9e-030
Identities = 20/48 (41%), Positives = 29/48 (60%)
Frame = +2 / +3
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
+ P+++S+ FSGT AC TVYP+E +++E YHK HGG
Sbjct: 414 KTPNRVSALFSGTQEKCLACGNTVYPIEKVSVEGVGYHKACFKCMHGG 557
>gb|CF477204.1|CF477204 RTWW3_6_C08.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_6_C08_A022 5', mRNA sequence
Length = 746
Score = 95.9 bits (203), Expect(2) = 9e-030
Identities = 36/81 (44%), Positives = 44/81 (54%)
Frame = +2 / +1
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
+F GTQ C C+K +D L +HK CF HC G L +YSS LYCK H
Sbjct: 61 AFAGTQQKCKACEKTVYVVDQLTADGSVFHKACFRCHHCNGTLKLSNYSSFEGVLYCKPH 240
Query: 251 FEQLFKETGSFSKNFTPXXKS 313
F+QLFK TGS K+F K+
Sbjct: 241 FDQLFKRTGSLDKSFEGTPKA 303
Score = 53.8 bits (111), Expect(2) = 9e-030
Identities = 20/48 (41%), Positives = 29/48 (60%)
Frame = +2 / +1
Query: 335 RAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
+ P+++S+ FSGT AC TVYP+E +++E YHK HGG
Sbjct: 337 KTPNRVSALFSGTQEKCLACGNTVYPIEKVSVEGVGYHKACFKCMHGG 480
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 168,512,812
Number of Sequences: 355925
Number of extensions: 1372399
Number of successful extensions: 15801
Number of sequences better than 1.0e-020: 106
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 5970092700
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)