TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ4h04.xg.2.1
(393 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX250799.1|BX250799 BX250799 Pinus pinaster differenciat... 100 4e-021
gb|BE644138.1|BE644138 NXCI_054_H09_F NXCI (Nsf Xylem Compr... 100 4e-021
gb|CF389446.1|CF389446 RTDR2_7_D03.g1_A021 Loblolly pine ro... 100 4e-021
gb|CF390163.1|CF390163 RTDR2_12_E06.g1_A021 Loblolly pine r... 100 4e-021
gb|CO159320.1|CO159320 FLD1_12_H01.g1_A029 Root flooded Pin... 100 4e-021
gb|CX652552.1|CX652552 COLD1_59_G09.g1_A029 Root cold Pinus... 100 4e-021
gb|CX653292.1|CX653292 COLD1_64_D11.g1_A029 Root cold Pinus... 100 4e-021
gb|DR012004.1|DR012004 HEAT1_9_A04.g1_A029 Root at 37 C for... 100 4e-021
gb|DR015870.1|DR015870 STRS1_6_E08.b1_A034 Shoot tip pitch ... 100 4e-021
gb|DR047460.1|DR047460 RTBOR1_1_E07.b1_A029 Roots plus adde... 100 4e-021
gb|DR078300.1|DR078300 RTFEPL1_3_E07.b1_A029 Roots plus add... 100 4e-021
gb|DR109623.1|DR109623 RTS1_3_C05.g1_A029 Roots minus sulfu... 100 4e-021
gb|DR116719.1|DR116719 RTMG1_2_H06.b1_A029 Roots minus magn... 100 4e-021
gb|DR116804.1|DR116804 RTMG1_2_H06.g1_A029 Roots minus magn... 100 4e-021
gb|DR168155.1|DR168155 RTPHOS1_23_C06.g1_A029 Roots minus p... 100 4e-021
gb|DR683816.1|DR683816 EST1073892 Normalized pine embryo li... 100 4e-021
gb|DR694258.1|DR694258 EST1084349 Normalized pine embryo li... 100 4e-021
gb|DR695125.1|DR695125 EST1085218 Normalized pine embryo li... 100 4e-021
gb|DT631539.1|DT631539 EST1146470 Normalized pine embryo li... 100 4e-021
gb|DT638590.1|DT638590 EST1153521 Normalized pine embryo li... 100 4e-021
>gb|BX250799.1|BX250799 BX250799 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP041D09, mRNA sequence
Length = 676
Score = 100 bits (214), Expect = 4e-021
Identities = 37/76 (48%), Positives = 47/76 (61%)
Frame = +3 / +1
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
M+FTG KC CDK +F+D L+ YHK HCKG + YSSM+ LYCK
Sbjct: 370 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 549
Query: 249 HFXQLFKXTGSFSKNF 296
HF QLF+ +G+F+KNF
Sbjct: 550 HFDQLFRESGNFNKNF 597
>gb|BE644138.1|BE644138 NXCI_054_H09_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_054_H09 5' similar to Arabidopsis
thaliana sequence At3g55770 transcription factor L2 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 407
Score = 100 bits (214), Expect = 4e-021
Identities = 37/76 (48%), Positives = 47/76 (61%)
Frame = +3 / +3
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
M+FTG KC CDK +F+D L+ YHK HCKG + YSSM+ LYCK
Sbjct: 24 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 203
Query: 249 HFXQLFKXTGSFSKNF 296
HF QLF+ +G+F+KNF
Sbjct: 204 HFDQLFRESGNFNKNF 251
>gb|CF389446.1|CF389446 RTDR2_7_D03.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_7_D03_A021 5', mRNA
sequence
Length = 674
Score = 100 bits (214), Expect = 4e-021
Identities = 37/76 (48%), Positives = 47/76 (61%)
Frame = +3 / +1
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
M+FTG KC CDK +F+D L+ YHK HCKG + YSSM+ LYCK
Sbjct: 355 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 534
Query: 249 HFXQLFKXTGSFSKNF 296
HF QLF+ +G+F+KNF
Sbjct: 535 HFDQLFRESGNFNKNF 582
>gb|CF390163.1|CF390163 RTDR2_12_E06.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_12_E06_A021 5', mRNA
sequence
Length = 671
Score = 100 bits (214), Expect = 4e-021
Identities = 37/76 (48%), Positives = 47/76 (61%)
Frame = +3 / +2
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
M+FTG KC CDK +F+D L+ YHK HCKG + YSSM+ LYCK
Sbjct: 269 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 448
Query: 249 HFXQLFKXTGSFSKNF 296
HF QLF+ +G+F+KNF
Sbjct: 449 HFDQLFRESGNFNKNF 496
>gb|CO159320.1|CO159320 FLD1_12_H01.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_12_H01_A029 5', mRNA sequence
Length = 380
Score = 100 bits (214), Expect = 4e-021
Identities = 37/76 (48%), Positives = 47/76 (61%)
Frame = +3 / +1
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
M+FTG KC CDK +F+D L+ YHK HCKG + YSSM+ LYCK
Sbjct: 88 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 267
Query: 249 HFXQLFKXTGSFSKNF 296
HF QLF+ +G+F+KNF
Sbjct: 268 HFDQLFRESGNFNKNF 315
>gb|CX652552.1|CX652552 COLD1_59_G09.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_59_G09_A029 5', mRNA sequence
Length = 542
Score = 100 bits (214), Expect = 4e-021
Identities = 37/76 (48%), Positives = 47/76 (61%)
Frame = +3 / +3
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
M+FTG KC CDK +F+D L+ YHK HCKG + YSSM+ LYCK
Sbjct: 33 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 212
Query: 249 HFXQLFKXTGSFSKNF 296
HF QLF+ +G+F+KNF
Sbjct: 213 HFDQLFRESGNFNKNF 260
>gb|CX653292.1|CX653292 COLD1_64_D11.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_64_D11_A029 5', mRNA sequence
Length = 767
Score = 100 bits (214), Expect = 4e-021
Identities = 37/76 (48%), Positives = 47/76 (61%)
Frame = +3 / +2
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
M+FTG KC CDK +F+D L+ YHK HCKG + YSSM+ LYCK
Sbjct: 407 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 586
Query: 249 HFXQLFKXTGSFSKNF 296
HF QLF+ +G+F+KNF
Sbjct: 587 HFDQLFRESGNFNKNF 634
>gb|DR012004.1|DR012004 HEAT1_9_A04.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_9_A04_A029 5', mRNA sequence
Length = 663
Score = 100 bits (214), Expect = 4e-021
Identities = 37/76 (48%), Positives = 47/76 (61%)
Frame = +3 / +3
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
M+FTG KC CDK +F+D L+ YHK HCKG + YSSM+ LYCK
Sbjct: 135 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 314
Query: 249 HFXQLFKXTGSFSKNF 296
HF QLF+ +G+F+KNF
Sbjct: 315 HFDQLFRESGNFNKNF 362
>gb|DR015870.1|DR015870 STRS1_6_E08.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_6_E08_A034 3', mRNA sequence
Length = 880
Score = 100 bits (214), Expect = 4e-021
Identities = 37/76 (48%), Positives = 47/76 (61%)
Frame = +3 / -3
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
M+FTG KC CDK +F+D L+ YHK HCKG + YSSM+ LYCK
Sbjct: 407 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 228
Query: 249 HFXQLFKXTGSFSKNF 296
HF QLF+ +G+F+KNF
Sbjct: 227 HFDQLFRESGNFNKNF 180
>gb|DR047460.1|DR047460 RTBOR1_1_E07.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_1_E07_A029 3', mRNA sequence
Length = 767
Score = 100 bits (214), Expect = 4e-021
Identities = 37/76 (48%), Positives = 47/76 (61%)
Frame = +3 / -3
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
M+FTG KC CDK +F+D L+ YHK HCKG + YSSM+ LYCK
Sbjct: 405 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 226
Query: 249 HFXQLFKXTGSFSKNF 296
HF QLF+ +G+F+KNF
Sbjct: 225 HFDQLFRESGNFNKNF 178
>gb|DR078300.1|DR078300 RTFEPL1_3_E07.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_3_E07_A029 3', mRNA sequence
Length = 783
Score = 100 bits (214), Expect = 4e-021
Identities = 37/76 (48%), Positives = 47/76 (61%)
Frame = +3 / -2
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
M+FTG KC CDK +F+D L+ YHK HCKG + YSSM+ LYCK
Sbjct: 581 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 402
Query: 249 HFXQLFKXTGSFSKNF 296
HF QLF+ +G+F+KNF
Sbjct: 401 HFDQLFRESGNFNKNF 354
>gb|DR109623.1|DR109623 RTS1_3_C05.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_3_C05_A029 5', mRNA sequence
Length = 762
Score = 100 bits (214), Expect = 4e-021
Identities = 37/76 (48%), Positives = 47/76 (61%)
Frame = +3 / +1
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
M+FTG KC CDK +F+D L+ YHK HCKG + YSSM+ LYCK
Sbjct: 373 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 552
Query: 249 HFXQLFKXTGSFSKNF 296
HF QLF+ +G+F+KNF
Sbjct: 553 HFDQLFRESGNFNKNF 600
>gb|DR116719.1|DR116719 RTMG1_2_H06.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_2_H06_A029 3', mRNA sequence
Length = 846
Score = 100 bits (214), Expect = 4e-021
Identities = 37/76 (48%), Positives = 47/76 (61%)
Frame = +3 / +1
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
M+FTG KC CDK +F+D L+ YHK HCKG + YSSM+ LYCK
Sbjct: 85 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 264
Query: 249 HFXQLFKXTGSFSKNF 296
HF QLF+ +G+F+KNF
Sbjct: 265 HFDQLFRESGNFNKNF 312
>gb|DR116804.1|DR116804 RTMG1_2_H06.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_2_H06_A029 5', mRNA sequence
Length = 838
Score = 100 bits (214), Expect = 4e-021
Identities = 37/76 (48%), Positives = 47/76 (61%)
Frame = +3 / +3
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
M+FTG KC CDK +F+D L+ YHK HCKG + YSSM+ LYCK
Sbjct: 354 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 533
Query: 249 HFXQLFKXTGSFSKNF 296
HF QLF+ +G+F+KNF
Sbjct: 534 HFDQLFRESGNFNKNF 581
>gb|DR168155.1|DR168155 RTPHOS1_23_C06.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_23_C06_A029 5', mRNA sequence
Length = 612
Score = 100 bits (214), Expect = 4e-021
Identities = 37/76 (48%), Positives = 47/76 (61%)
Frame = +3 / +3
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
M+FTG KC CDK +F+D L+ YHK HCKG + YSSM+ LYCK
Sbjct: 231 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 410
Query: 249 HFXQLFKXTGSFSKNF 296
HF QLF+ +G+F+KNF
Sbjct: 411 HFDQLFRESGNFNKNF 458
>gb|DR683816.1|DR683816 EST1073892 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAL61 3' end, mRNA sequence
Length = 803
Score = 100 bits (214), Expect = 4e-021
Identities = 37/76 (48%), Positives = 47/76 (61%)
Frame = +3 / +2
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
M+FTG KC CDK +F+D L+ YHK HCKG + YSSM+ LYCK
Sbjct: 305 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 484
Query: 249 HFXQLFKXTGSFSKNF 296
HF QLF+ +G+F+KNF
Sbjct: 485 HFDQLFRESGNFNKNF 532
>gb|DR694258.1|DR694258 EST1084349 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEA11 3' end, mRNA sequence
Length = 766
Score = 100 bits (214), Expect = 4e-021
Identities = 37/76 (48%), Positives = 47/76 (61%)
Frame = +3 / +1
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
M+FTG KC CDK +F+D L+ YHK HCKG + YSSM+ LYCK
Sbjct: 364 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 543
Query: 249 HFXQLFKXTGSFSKNF 296
HF QLF+ +G+F+KNF
Sbjct: 544 HFDQLFRESGNFNKNF 591
>gb|DR695125.1|DR695125 EST1085218 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEK79 3' end, mRNA sequence
Length = 820
Score = 100 bits (214), Expect = 4e-021
Identities = 37/76 (48%), Positives = 47/76 (61%)
Frame = +3 / +3
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
M+FTG KC CDK +F+D L+ YHK HCKG + YSSM+ LYCK
Sbjct: 183 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 362
Query: 249 HFXQLFKXTGSFSKNF 296
HF QLF+ +G+F+KNF
Sbjct: 363 HFDQLFRESGNFNKNF 410
>gb|DT631539.1|DT631539 EST1146470 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF984 3' end, mRNA sequence
Length = 815
Score = 100 bits (214), Expect = 4e-021
Identities = 37/76 (48%), Positives = 47/76 (61%)
Frame = +3 / +1
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
M+FTG KC CDK +F+D L+ YHK HCKG + YSSM+ LYCK
Sbjct: 313 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 492
Query: 249 HFXQLFKXTGSFSKNF 296
HF QLF+ +G+F+KNF
Sbjct: 493 HFDQLFRESGNFNKNF 540
>gb|DT638590.1|DT638590 EST1153521 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHH03 3' end, mRNA sequence
Length = 841
Score = 100 bits (214), Expect = 4e-021
Identities = 37/76 (48%), Positives = 47/76 (61%)
Frame = +3 / +3
Query: 69 MSFTGXXXKCTXCDKXXHFIDLLTXXXXIYHKTXXXXXHCKGXXSMXXYSSMDXXLYCKT 248
M+FTG KC CDK +F+D L+ YHK HCKG + YSSM+ LYCK
Sbjct: 372 MAFTGTQQKCKACDKTVYFVDQLSADGVSYHKACFRCNHCKGTLKLSNYSSMEGVLYCKP 551
Query: 249 HFXQLFKXTGSFSKNF 296
HF QLF+ +G+F+KNF
Sbjct: 552 HFDQLFRESGNFNKNF 599
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 119,055,761
Number of Sequences: 355925
Number of extensions: 908145
Number of successful extensions: 21995
Number of sequences better than 1.0e-020: 22
length of database: 72,425,745
effective HSP length: 50
effective length of database: 54,629,495
effective search space used: 4370359600
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)