TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAM10b11.yg.2.1
(554 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CR354631.1|CR354631 CR354631 Pinus pinaster differenciat... 147 5e-035
gb|CO363704.1|CO363704 RTK1_11_G09.b1_A029 Roots minus pota... 147 7e-035
gb|DR691990.1|DR691990 EST1082077 Normalized pine embryo li... 143 1e-033
gb|DT637035.1|DT637035 EST1151966 Normalized pine embryo li... 143 1e-033
gb|BX255184.1|BX255184 BX255184 Pinus pinaster differenciat... 141 4e-033
gb|AW289467.1|AW289467 NXNV001H04F Nsf Xylem Normal wood Ve... 137 5e-032
gb|CD028087.1|CD028087 NXNV001H04 Nsf Xylem Normal wood Ver... 137 5e-032
gb|DT633781.1|DT633781 EST1148712 Normalized pine embryo li... 126 2e-028
gb|DR384246.1|DR384246 RTHG1_1_B06.b1_A029 Roots plus added... 121 5e-027
gb|CF479552.1|CF479552 RTWW3_22_F05.g1_A022 Well-watered lo... 118 3e-026
gb|DR742425.1|DR742425 RTCU1_4_A06.b1_A029 Roots plus added... 112 2e-024
gb|DR693460.1|DR693460 EST1083548 Normalized pine embryo li... 105 2e-022
gb|DR694856.1|DR694856 EST1084949 Normalized pine embryo li... 105 2e-022
gb|DT638072.1|DT638072 EST1153003 Normalized pine embryo li... 105 2e-022
gb|DT638847.1|DT638847 EST1153778 Normalized pine embryo li... 105 2e-022
gb|DR023673.1|DR023673 STRS1_59_F11.b1_A034 Shoot tip pitch... 105 2e-022
gb|DR110115.1|DR110115 RTS1_9_A09.b1_A029 Roots minus sulfu... 103 1e-021
gb|DR694717.1|DR694717 EST1084809 Normalized pine embryo li... 103 1e-021
gb|DT639173.1|DT639173 EST1154104 Normalized pine embryo li... 103 1e-021
>gb|CR354631.1|CR354631 CR354631 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 124B09, mRNA sequence
Length = 646
Score = 147 bits (316), Expect = 5e-035
Identities = 59/115 (51%), Positives = 76/115 (66%)
Frame = +2 / +2
Query: 206 LAPEDDEASSRYTSDGTLDINKQRALKKSTGNWRACFMILGTEFAECLAFYATAKNLVTY 385
L E ++ YT DG++D + ++K++TGNWRAC ILG E E LA+Y NLVTY
Sbjct: 89 LLQEGKDSEEEYTGDGSVDFWGRPSVKENTGNWRACPFILGNECCERLAYYGINTNLVTY 268
Query: 386 LTAELGETNIDAATNVSTWIGSCYLTPLISAFLADTYWGRYKTMIVFLLLYIVGM 550
LT L + N AA NV+TW G+CYLTPL+ A LAD YWGRY T+ F +Y +GM
Sbjct: 269 LTKRLHQGNATAAKNVTTWAGTCYLTPLLGAVLADAYWGRYWTIAAFSTIYFIGM 433
>gb|CO363704.1|CO363704 RTK1_11_G09.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_11_G09_A029 3', mRNA sequence
Length = 816
Score = 147 bits (315), Expect = 7e-035
Identities = 59/115 (51%), Positives = 76/115 (66%)
Frame = +2 / -3
Query: 206 LAPEDDEASSRYTSDGTLDINKQRALKKSTGNWRACFMILGTEFAECLAFYATAKNLVTY 385
L E ++ YT DG++D + ++K++TGNWRAC ILG E E LA+Y NLVTY
Sbjct: 718 LLQEGKDSEEEYTGDGSVDFWGRPSVKENTGNWRACPFILGNECCERLAYYGINTNLVTY 539
Query: 386 LTAELGETNIDAATNVSTWIGSCYLTPLISAFLADTYWGRYKTMIVFLLLYIVGM 550
LT L + N AA NV+TW G+CYLTPL+ A LAD YWGRY T+ F +Y +GM
Sbjct: 538 LTKRLHQGNAAAAKNVTTWAGTCYLTPLLGAVLADAYWGRYWTIAAFSTIYFIGM 374
>gb|DR691990.1|DR691990 EST1082077 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADG64 3' end, mRNA sequence
Length = 751
Score = 143 bits (306), Expect = 1e-033
Identities = 55/104 (52%), Positives = 72/104 (69%)
Frame = +2 / +1
Query: 239 YTSDGTLDINKQRALKKSTGNWRACFMILGTEFAECLAFYATAKNLVTYLTAELGETNID 418
YT DG++DI+ + ++K +GNWRAC ILG E E LA+Y N+V YL + E N
Sbjct: 145 YTQDGSVDIHGKPSVKNKSGNWRACPFILGNECCERLAYYGINTNMVMYLRKKFMEGNAT 324
Query: 419 AATNVSTWIGSCYLTPLISAFLADTYWGRYKTMIVFLLLYIVGM 550
AA NV+ W G+CY+TPLI AF+AD YWGRYKT+ VF ++Y GM
Sbjct: 325 AANNVTNWSGTCYITPLIGAFIADAYWGRYKTIAVFSIVYFFGM 456
>gb|DT637035.1|DT637035 EST1151966 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGY96 3' end, mRNA sequence
Length = 743
Score = 143 bits (306), Expect = 1e-033
Identities = 55/104 (52%), Positives = 72/104 (69%)
Frame = +2 / +3
Query: 239 YTSDGTLDINKQRALKKSTGNWRACFMILGTEFAECLAFYATAKNLVTYLTAELGETNID 418
YT DG++DI+ + ++K +GNWRAC ILG E E LA+Y N+V YL + E N
Sbjct: 153 YTQDGSVDIHGKPSVKNKSGNWRACPFILGNECCERLAYYGINTNMVMYLRKKFMEGNAT 332
Query: 419 AATNVSTWIGSCYLTPLISAFLADTYWGRYKTMIVFLLLYIVGM 550
AA NV+ W G+CY+TPLI AF+AD YWGRYKT+ VF ++Y GM
Sbjct: 333 AANNVTNWSGTCYITPLIGAFIADAYWGRYKTIAVFSIVYFFGM 464
>gb|BX255184.1|BX255184 BX255184 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP112D10, mRNA sequence
Length = 542
Score = 141 bits (302), Expect = 4e-033
Identities = 57/115 (49%), Positives = 74/115 (64%)
Frame = +2 / +1
Query: 206 LAPEDDEASSRYTSDGTLDINKQRALKKSTGNWRACFMILGTEFAECLAFYATAKNLVTY 385
L E ++ YT DG++D + ++K++TGNWRAC I E E LA+Y NLVTY
Sbjct: 91 LLQEGKDSEEEYTGDGSVDFWGRPSVKENTGNWRACPFIF*NECCERLAYYGINTNLVTY 270
Query: 386 LTAELGETNIDAATNVSTWIGSCYLTPLISAFLADTYWGRYKTMIVFLLLYIVGM 550
LT L + N AA NV+TW G+CYLTPL+ A LAD YWGRY T+ F +Y +GM
Sbjct: 271 LTKRLHQGNATAAKNVTTWAGTCYLTPLLGAVLADAYWGRYWTIAAFSTIYFIGM 435
>gb|AW289467.1|AW289467 NXNV001H04F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV001H04 5', mRNA sequence
Length = 493
Score = 137 bits (294), Expect = 5e-032
Identities = 56/115 (48%), Positives = 73/115 (63%)
Frame = +2 / +3
Query: 206 LAPEDDEASSRYTSDGTLDINKQRALKKSTGNWRACFMILGTEFAECLAFYATAKNLVTY 385
L E ++ YT DG++D + ++K++TGNWRAC ILG E E LA+Y NLVTY
Sbjct: 126 LLQEGKDSEEEYTGDGSVDFWGRPSVKENTGNWRACPFILGNECCERLAYYGINTNLVTY 305
Query: 386 LTAELGETNIDAATNVSTWIGSCYLTPLISAFLADTYWGRYKTMIVFLLLYIVGM 550
LT L + N AA NV+TW G+CYLTPL+ A LAD YWG Y T+ +Y + M
Sbjct: 306 LTKRLHQGNAAAAKNVTTWAGTCYLTPLLGAVLADAYWGXYWTIAXXSTIYFIXM 470
>gb|CD028087.1|CD028087 NXNV001H04 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV001H04 5' similar to Arabidopsis thaliana sequence
At2g02040 histidine transport protein (PTR2-B) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 493
Score = 137 bits (294), Expect = 5e-032
Identities = 56/115 (48%), Positives = 73/115 (63%)
Frame = +2 / +3
Query: 206 LAPEDDEASSRYTSDGTLDINKQRALKKSTGNWRACFMILGTEFAECLAFYATAKNLVTY 385
L E ++ YT DG++D + ++K++TGNWRAC ILG E E LA+Y NLVTY
Sbjct: 126 LLQEGKDSEEEYTGDGSVDFWGRPSVKENTGNWRACPFILGNECCERLAYYGINTNLVTY 305
Query: 386 LTAELGETNIDAATNVSTWIGSCYLTPLISAFLADTYWGRYKTMIVFLLLYIVGM 550
LT L + N AA NV+TW G+CYLTPL+ A LAD YWG Y T+ +Y + M
Sbjct: 306 LTKRLHQGNAAAAKNVTTWAGTCYLTPLLGAVLADAYWGXYWTIAXXSTIYFIXM 470
>gb|DT633781.1|DT633781 EST1148712 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFY65 3' end, mRNA sequence
Length = 882
Score = 126 bits (269), Expect = 2e-028
Identities = 46/110 (41%), Positives = 73/110 (66%)
Frame = +2 / +3
Query: 224 EASSRYTSDGTLDINKQRALKKSTGNWRACFMILGTEFAECLAFYATAKNLVTYLTAELG 403
E+ DG++D+ + L+ TG W+AC ++ E E +A+Y A NLV YLTA+L
Sbjct: 162 ESQGLIAMDGSVDLKGRPVLRSKTGRWKACSFVVAYEVFERMAYYGIASNLVIYLTAKLH 341
Query: 404 ETNIDAATNVSTWIGSCYLTPLISAFLADTYWGRYKTMIVFLLLYIVGML 553
E + +++NV+ W G+ ++TP+I A++ADT+WGRY T VF +YI+GM+
Sbjct: 342 EGTVSSSSNVANWSGTVWITPVIGAYIADTHWGRYWTFTVFSFVYILGMI 491
>gb|DR384246.1|DR384246 RTHG1_1_B06.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_1_B06_A029 3', mRNA sequence
Length = 839
Score = 121 bits (258), Expect = 5e-027
Identities = 47/103 (45%), Positives = 69/103 (66%)
Frame = +2 / -1
Query: 242 TSDGTLDINKQRALKKSTGNWRACFMILGTEFAECLAFYATAKNLVTYLTAELGETNIDA 421
T DG++D+ + A+ TG +AC I+G EF E LAF NLV YLT L E+ + A
Sbjct: 674 TLDGSVDLKGRPAVSGKTGGLKACSFIVGYEFCERLAFGGIWANLVIYLTTNLHESTVSA 495
Query: 422 ATNVSTWIGSCYLTPLISAFLADTYWGRYKTMIVFLLLYIVGM 550
+ NV+ W+G+ ++ P++ A++ADT+WGRY T IVF +Y+VGM
Sbjct: 494 SRNVNNWVGTMWIMPMLGAYIADTHWGRYWTFIVFSAVYVVGM 366
>gb|CF479552.1|CF479552 RTWW3_22_F05.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_22_F05_A022 5', mRNA sequence
Length = 606
Score = 118 bits (252), Expect = 3e-026
Identities = 47/103 (45%), Positives = 68/103 (66%)
Frame = +2 / +2
Query: 242 TSDGTLDINKQRALKKSTGNWRACFMILGTEFAECLAFYATAKNLVTYLTAELGETNIDA 421
T DG++D+ + A+ TG +AC I+G EF E LAF NLV YLT L E+ + A
Sbjct: 122 TLDGSVDLKGRPAVSGKTGGLKACSFIVGYEFCERLAFGGIWANLVIYLTTYLHESTVSA 301
Query: 422 ATNVSTWIGSCYLTPLISAFLADTYWGRYKTMIVFLLLYIVGM 550
+ NV+ W+G+ ++ P++ A++ADT WGRY T IVF +Y+VGM
Sbjct: 302 SRNVNNWVGTMWIMPMLGAYIADTRWGRYWTFIVFSTVYVVGM 430
>gb|DR742425.1|DR742425 RTCU1_4_A06.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_4_A06_A029 3', mRNA sequence
Length = 527
Score = 112 bits (240), Expect = 2e-024
Identities = 46/81 (56%), Positives = 54/81 (66%)
Frame = +2 / -1
Query: 308 ACFMILGTEFAECLAFYATAKNLVTYLTAELGETNIDAATNVSTWIGSCYLTPLISAFLA 487
AC ILG E E LA+Y NLVTYLT L + N AA NV+TW G+CYLTPL+ A LA
Sbjct: 527 ACPFILGNECCERLAYYGINTNLVTYLTKRLHQGNAAAAKNVTTWAGTCYLTPLLGAVLA 348
Query: 488 DTYWGRYKTMIVFLLLYIVGM 550
D YWGRY T+ F +Y +GM
Sbjct: 347 DAYWGRYWTIAAFSTIYFIGM 285
>gb|DR693460.1|DR693460 EST1083548 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADZ46 3' end, mRNA sequence
Length = 779
Score = 105 bits (225), Expect = 2e-022
Identities = 42/109 (38%), Positives = 67/109 (61%)
Frame = +2 / +3
Query: 227 ASSRYTSDGTLDINKQRALKKSTGNWRACFMILGTEFAECLAFYATAKNLVTYLTAELGE 406
+SS + DG++D + Q + TG W+A I+G E AE LA+ NLVTYLT + E
Sbjct: 30 SSSGFVGDGSVDFHGQSVRRAHTGRWKASLFIIGVEIAERLAYAGIHSNLVTYLTVVMHE 209
Query: 407 TNIDAATNVSTWIGSCYLTPLISAFLADTYWGRYKTMIVFLLLYIVGML 553
+ AA NV+ W G + P + A++AD+Y GRY T+ + ++Y++G++
Sbjct: 210 STTTAAKNVNIWSGVVAMLPFLGAYVADSYLGRYWTIALSSVIYLMGLI 356
>gb|DR694856.1|DR694856 EST1084949 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEH66 3' end, mRNA sequence
Length = 780
Score = 105 bits (225), Expect = 2e-022
Identities = 42/109 (38%), Positives = 67/109 (61%)
Frame = +2 / +3
Query: 227 ASSRYTSDGTLDINKQRALKKSTGNWRACFMILGTEFAECLAFYATAKNLVTYLTAELGE 406
+SS + DG++D + Q + TG W+A I+G E AE LA+ NLVTYLT + E
Sbjct: 30 SSSGFVGDGSVDFHGQSVRRAHTGRWKASLFIIGVEIAERLAYAGIHSNLVTYLTVVMHE 209
Query: 407 TNIDAATNVSTWIGSCYLTPLISAFLADTYWGRYKTMIVFLLLYIVGML 553
+ AA NV+ W G + P + A++AD+Y GRY T+ + ++Y++G++
Sbjct: 210 STTTAAKNVNIWSGVVAMLPFLGAYVADSYLGRYWTIALSSVIYLMGLI 356
>gb|DT638072.1|DT638072 EST1153003 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHA81 3' end, mRNA sequence
Length = 762
Score = 105 bits (225), Expect = 2e-022
Identities = 42/109 (38%), Positives = 67/109 (61%)
Frame = +2 / +2
Query: 227 ASSRYTSDGTLDINKQRALKKSTGNWRACFMILGTEFAECLAFYATAKNLVTYLTAELGE 406
+SS + DG++D + Q + TG W+A I+G E AE LA+ NLVTYLT + E
Sbjct: 38 SSSGFVGDGSVDFHGQSVRRAHTGRWKASLFIIGVEIAERLAYAGIHSNLVTYLTVVMHE 217
Query: 407 TNIDAATNVSTWIGSCYLTPLISAFLADTYWGRYKTMIVFLLLYIVGML 553
+ AA NV+ W G + P + A++AD+Y GRY T+ + ++Y++G++
Sbjct: 218 STTTAAKNVNIWSGVVAMLPFLGAYVADSYLGRYWTIALSSVIYLMGLI 364
>gb|DT638847.1|DT638847 EST1153778 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHK17 3' end, mRNA sequence
Length = 865
Score = 105 bits (225), Expect = 2e-022
Identities = 42/109 (38%), Positives = 67/109 (61%)
Frame = +2 / +2
Query: 227 ASSRYTSDGTLDINKQRALKKSTGNWRACFMILGTEFAECLAFYATAKNLVTYLTAELGE 406
+SS + DG++D + Q + TG W+A I+G E AE LA+ NLVTYLT + E
Sbjct: 38 SSSGFVGDGSVDFHGQSVRRAHTGRWKASLFIIGVEIAERLAYAGIHSNLVTYLTVVMHE 217
Query: 407 TNIDAATNVSTWIGSCYLTPLISAFLADTYWGRYKTMIVFLLLYIVGML 553
+ AA NV+ W G + P + A++AD+Y GRY T+ + ++Y++G++
Sbjct: 218 STTTAAKNVNIWSGVVAMLPFLGAYVADSYLGRYWTIALSSVIYLMGLI 364
>gb|DR023673.1|DR023673 STRS1_59_F11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_59_F11_A034 3', mRNA sequence
Length = 870
Score = 105 bits (224), Expect = 2e-022
Identities = 36/105 (34%), Positives = 68/105 (64%)
Frame = +2 / -3
Query: 239 YTSDGTLDINKQRALKKSTGNWRACFMILGTEFAECLAFYATAKNLVTYLTAELGETNID 418
+ +DG++D ++ A++ ++G W+A I+G EF+E L +Y A +L+ YLT + E
Sbjct: 613 WVNDGSVDFKRRPAIRSTSGQWKASLFIIGVEFSERLTYYGIASSLIIYLTTMMHEGTAT 434
Query: 419 AATNVSTWIGSCYLTPLISAFLADTYWGRYKTMIVFLLLYIVGML 553
AA +V+ W G + PL+ F+AD Y+GRY +++ ++Y++G++
Sbjct: 433 AAKDVNNWTGVTTVMPLVGGFMADAYFGRYWMVLISSIIYLLGLV 299
>gb|DR110115.1|DR110115 RTS1_9_A09.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_9_A09_A029 3', mRNA sequence
Length = 792
Score = 103 bits (219), Expect = 1e-021
Identities = 42/99 (42%), Positives = 62/99 (62%)
Frame = +2 / -2
Query: 257 LDINKQRALKKSTGNWRACFMILGTEFAECLAFYATAKNLVTYLTAELGETNIDAATNVS 436
+D+ + L+ TG W+A I+G EF+E L +YA A NL+ YLT L E +A NV+
Sbjct: 725 VDLRGRPVLRAKTGRWKASVFIIGVEFSERLTYYAIASNLIIYLTTILHEGVATSAKNVN 546
Query: 437 TWIGSCYLTPLISAFLADTYWGRYKTMIVFLLLYIVGML 553
W G+ + PLI FLAD Y GRY ++V ++YI+G++
Sbjct: 545 YWTGATTVLPLIGGFLADAYCGRYWMILVSSIIYILGLI 429
>gb|DR694717.1|DR694717 EST1084809 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEG05 3' end, mRNA sequence
Length = 888
Score = 103 bits (219), Expect = 1e-021
Identities = 42/99 (42%), Positives = 62/99 (62%)
Frame = +2 / +3
Query: 257 LDINKQRALKKSTGNWRACFMILGTEFAECLAFYATAKNLVTYLTAELGETNIDAATNVS 436
+D+ + L+ TG W+A I+G EF+E L +YA A NL+ YLT L E +A NV+
Sbjct: 204 VDLRGRPVLRAKTGRWKASVFIIGVEFSERLTYYAIASNLIIYLTTILHEGVATSAKNVN 383
Query: 437 TWIGSCYLTPLISAFLADTYWGRYKTMIVFLLLYIVGML 553
W G+ + PLI FLAD Y GRY ++V ++YI+G++
Sbjct: 384 YWTGATTVLPLIGGFLADAYCGRYWMILVSSIIYILGLI 500
>gb|DT639173.1|DT639173 EST1154104 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHN85 3' end, mRNA sequence
Length = 816
Score = 103 bits (219), Expect = 1e-021
Identities = 42/99 (42%), Positives = 62/99 (62%)
Frame = +2 / +2
Query: 257 LDINKQRALKKSTGNWRACFMILGTEFAECLAFYATAKNLVTYLTAELGETNIDAATNVS 436
+D+ + L+ TG W+A I+G EF+E L +YA A NL+ YLT L E +A NV+
Sbjct: 212 VDLRGRPVLRAKTGRWKASVFIIGVEFSERLTYYAIASNLIIYLTTILHEGVATSAKNVN 391
Query: 437 TWIGSCYLTPLISAFLADTYWGRYKTMIVFLLLYIVGML 553
W G+ + PLI FLAD Y GRY ++V ++YI+G++
Sbjct: 392 YWTGATTVLPLIGGFLADAYCGRYWMILVSSIIYILGLI 508
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 317,631,588
Number of Sequences: 355925
Number of extensions: 4758522
Number of successful extensions: 56133
Number of sequences better than 1.0e-020: 22
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 7218384810
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)