TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAJ4a11.xg.3.2
(2249 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG673802.1|BG673802 NXPV_075_C07_F NXPV (Nsf Xylem Plani... 317 2e-085
gb|BQ698665.1|BQ698665 NXPV_074_F11_F NXPV (Nsf Xylem Plani... 271 1e-071
gb|DR690234.1|DR690234 EST1080320 Normalized pine embryo li... 70 1e-036
gb|CV033797.1|CV033797 RTNACL1_36_E02.g1_A029 Roots plus ad... 70 8e-036
gb|DT635865.1|DT635865 EST1150796 Normalized pine embryo li... 70 1e-031
gb|BQ703174.1|BQ703174 NXSI_137_E05_F NXSI (Nsf Xylem Side ... 125 7e-031
gb|DR686409.1|DR686409 EST1076487 Normalized pine embryo li... 90 2e-030
gb|DR019543.1|DR019543 STRS1_30_F06.g1_A034 Shoot tip pitch... 90 2e-028
gb|DT637670.1|DT637670 EST1152601 Normalized pine embryo li... 95 9e-025
gb|DR692650.1|DR692650 EST1082738 Normalized pine embryo li... 95 9e-025
gb|BI643905.1|BI643905 NXPV_126_H07_F NXPV (Nsf Xylem Plani... 109 1e-022
>gb|BG673802.1|BG673802 NXPV_075_C07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_075_C07 5' similar to Arabidopsis
thaliana sequence At3g21160 putative alpha
1,2-mannosidase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 525
Score = 317 bits (686), Expect = 2e-085
Identities = 123/174 (70%), Positives = 148/174 (85%)
Frame = +3 / +1
Query: 1137 VKHYRQMWETSMEGLLSLTKKTTPSNYYYICEKNGGSLSDKMDELACFAPGMLALGASGY 1316
VKHYR+MWE SM+GL+ L KK++PS+Y YI E++G +L DKMDELACFAPGMLALGAS
Sbjct: 1 VKHYREMWERSMQGLMKLIKKSSPSSYTYIAERSGSALIDKMDELACFAPGMLALGASTD 180
Query: 1317 GPEKSEQIMNLAKELARTCYNFYQTTPTKLAGENYFFHTGQDMGVGTSWNILRPETVESL 1496
+K+ + ++LA+EL TCYNFY +T TKLAGENY FH G+DM VGTSWNI+ PET+ESL
Sbjct: 181 DTDKAAEYLSLAEELTWTCYNFYNSTRTKLAGENYIFHEGEDMVVGTSWNIMXPETIESL 360
Query: 1497 MYLWRLTGNKTYQDWGWDIFQAFEKNSRIESGYVGLRDVNTGEKDNMMQSFFLA 1658
MYLWR+TGN+TY WGWDIFQAFEK +RI+SGYVGLRDVN+GEK +MMQSFF A
Sbjct: 361 MYLWRITGNETYXXWGWDIFQAFEKQARIDSGYVGLRDVNSGEKXDMMQSFFXA 522
Score = 202 bits (436), Expect = 7e-051
Identities = 102/173 (58%), Positives = 118/173 (68%)
Frame = -2 / -2
Query: 1657 ARKKLCIMLSFSPVFTSLSPTYPDSMREFFSNAWNMSHPQSWYVLFPVKRHRYISDSTVS 1478
A KKLCI+ FSP+FTSLSPT P+S+R FSNA N+SHP YV FPV R RY+SDS VS
Sbjct: 521 AXKKLCIISXFSPLFTSLSPT*PESIRACFSNA*NISHPHXXYVSFPVIRQRYMSDSIVS 342
Query: 1477 GLKMFHDVPTPMSCPVWKK*FSPANFVGVVW*KL*QVLASSFARFIICSDFSGP*PEAPK 1298
GL MF DVPT +S P WK *FSPA+FV V *KL* V SS AR + S EAP+
Sbjct: 341 GLIMFQDVPTTISSPSWKM*FSPASFVRVEL*KL*HVQVSSSARERYSAALSVSSVEAPR 162
Query: 1297 ASIPGAKQASSSILSDNEPPFFSQM***LDGVVFLVKLNRPSIDVSHICL*CF 1139
ASIPGAK ASSSILS P S +* +G+ FL+ P +D+SHI L*CF
Sbjct: 161 ASIPGAKHASSSILSIKALPDRSAI*VYEEGLDFLINFINPCMDLSHISL*CF 3
Score = 174 bits (374), Expect = 3e-042
Identities = 78/174 (44%), Positives = 109/174 (62%)
Frame = -1 / -1
Query: 1658 CQEETLHHVVFFTSVHISQSHISRFYAGVLLKCLEYVPPPILVCFIPRQAPQVHQ*FNSL 1479
C ++ LHH+ FT++HIS SH++R + KCL+Y+P P+ +CFI +P+VH+* NS
Sbjct: 522 CXKKALHHIXLFTAIHIS*SHVARIDTSLFFKCLKYIPSPLPICFISSNSPKVHE*LNSF 343
Query: 1478 RSQDVPRRAHTHVLSSMEKIIFSSQLRGSGLVEIIAGPSKLFCKIHNLL*FFWPVTRGT* 1299
R +VP A+ H+LS ME ++FSSQL S ++++IA P KL CK L F ++R +
Sbjct: 342 RXHNVPGCANHHILSFMENVVFSSQLCPS*VIKVIACPGKLLCKGKILCCFIRIISRSSK 163
Query: 1298 GQHTRSKASKFIHLVRQRATILFTNVVVIRWCSFLG*T**TFH*CLPHLSVVFY 1137
+HTRSKA K IHLV Q T N+ V R FL *+ H PHLSVV +
Sbjct: 162 SKHTRSKACKLIHLVYQGTTRPLCNISV*RRT*FLNQFH*SLHGPFPHLSVVLH 1
Score = 90.4 bits (191), Expect(2) = 2e-021
Identities = 44/99 (44%), Positives = 64/99 (64%)
Frame = +2 / +3
Query: 1349 CKRAC*DLL*FLPNHSHEVGWRKLFFPYWTGHGCGHVVEHLETGDC*ITDVPVALDGE*N 1528
C+ A D+L* L +S + GWRKL FP G+G H++EH E + *+T VP+A +*N
Sbjct: 213 CRGAYLDML*LL*LNSDKAGWRKLHFP*RRGYGGWHILEHYEX*NY*VTHVPLANYWK*N 392
Query: 1529 IPRLGVGHIPGI*EELPHRIWICGTERCEHW*KRQHDAE 1645
I +G+G+I I*+ +R W+ GT+RCE *K +DA+
Sbjct: 393 IXXVGMGYISSI*KTSSYRFWLRGTKRCE*R*KX*YDAK 509
Score = 34.1 bits (68), Expect(2) = 2e-021
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2 / +3
Query: 1256 QDG*TCLLCSWYA 1294
QDG* C+LCSWYA
Sbjct: 120 QDG*ACMLCSWYA 158
>gb|BQ698665.1|BQ698665 NXPV_074_F11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_074_F11 5' similar to Arabidopsis
thaliana sequence At3g21160 putative alpha
1,2-mannosidase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 470
Score = 271 bits (586), Expect = 1e-071
Identities = 104/155 (67%), Positives = 127/155 (81%)
Frame = +3 / +1
Query: 1137 VKHYRQMWETSMEGLLSLTKKTTPSNYYYICEKNGGSLSDKMDELACFAPGMLALGASGY 1316
VKHYR+MWE SM+GL+ L KK++PS+Y YI E++G +L DKMDELACFAPGMLALGAS
Sbjct: 1 VKHYREMWERSMQGLMKLIKKSSPSSYTYIAERSGSALIDKMDELACFAPGMLALGASTD 180
Query: 1317 GPEKSEQIMNLAKELARTCYNFYQTTPTKLAGENYFFHTGQDMGVGTSWNILRPETVESL 1496
+K+ + ++LA+EL TCYNFY +T TKLAGENY FH G+DM VGTSWNI+RPET+ESL
Sbjct: 181 DTDKAAEYLSLAEELTWTCYNFYNSTRTKLAGENYIFHEGEDMVVGTSWNIMRPETIESL 360
Query: 1497 MYLWRLTGNKTYQDWGWDIFQAFEKNSRIESGYVG 1601
MYLWR+TGN+TY++WGWDI AF R SGYVG
Sbjct: 361 MYLWRITGNETYREWGWDIXXAFXXXXRXXSGYVG 465
Score = 166 bits (358), Expect = 4e-040
Identities = 86/154 (55%), Positives = 100/154 (64%)
Frame = -2 / -1
Query: 1600 PTYPDSMREFFSNAWNMSHPQSWYVLFPVKRHRYISDSTVSGLKMFHDVPTPMSCPVWKK 1421
PT P+ +R NA N+SHP S YV FPV R RY+SDS VSGL MF DVPT +S P WK
Sbjct: 464 PT*PEXIRXXXXNAXNISHPHSLYVSFPVIRQRYMSDSIVSGLIMFQDVPTTISSPSWKM 285
Query: 1420 *FSPANFVGVVW*KL*QVLASSFARFIICSDFSGP*PEAPKASIPGAKQASSSILSDNEP 1241
*FSPA+FV V *KL* V SS AR + S EAP+ASIPGAK ASSSILS
Sbjct: 284 *FSPASFVRVEL*KL*HVQVSSSARERYSAALSVSSVEAPRASIPGAKHASSSILSIKAL 105
Query: 1240 PFFSQM***LDGVVFLVKLNRPSIDVSHICL*CF 1139
P S +* +G+ FL+ P +D+SHI L*CF
Sbjct: 104 PDRSAI*VYEEGLDFLINFINPCMDLSHISL*CF 3
Score = 141 bits (303), Expect = 2e-032
Identities = 68/155 (43%), Positives = 92/155 (59%)
Frame = -1 / -3
Query: 1601 SHISRFYAGVLLKCLEYVPPPILVCFIPRQAPQVHQ*FNSLRSQDVPRRAHTHVLSSMEK 1422
SH++R KC Y+P P+ +CFI +P+VH+* NS R +VP A+ H+LS ME
Sbjct: 465 SHVARXXTXXXXKCXXYIPSPLPICFISSNSPKVHE*LNSFRPHNVPGCANHHILSFMEN 286
Query: 1421 IIFSSQLRGSGLVEIIAGPSKLFCKIHNLL*FFWPVTRGT*GQHTRSKASKFIHLVRQRA 1242
++FSSQL S ++++IA P KL CK L F ++R + +HTRSKA K IHLV Q
Sbjct: 285 VVFSSQLCPS*VIKVIACPGKLLCKGKILCCFIRIISRSSKSKHTRSKACKLIHLVYQGT 106
Query: 1241 TILFTNVVVIRWCSFLG*T**TFH*CLPHLSVVFY 1137
T N+ V R FL *+ H PHLSVV +
Sbjct: 105 TRPLCNISV*RRT*FLNQFH*SLHGPFPHLSVVLH 1
>gb|DR690234.1|DR690234 EST1080320 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACS69 3' end, mRNA sequence
Length = 824
Score = 70.3 bits (147), Expect(5) = 1e-036
Identities = 25/43 (58%), Positives = 35/43 (81%)
Frame = +3 / +3
Query: 1464 NILRPETVESLMYLWRLTGNKTYQDWGWDIFQAFEKNSRIESG 1592
N+LRPETVESL L R+T ++ Y++WGW IFQAFE ++++ SG
Sbjct: 492 NLLRPETVESLFVLHRITEDEKYREWGWQIFQAFESHTKVASG 620
Score = 63.8 bits (133), Expect(5) = 1e-036
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = +3 / +3
Query: 1638 MQSFFLAETLKYLYLLFSPPSVISFDEWVFNTEAHPLRI 1754
M++FFL ETLKYLYLLF ++ D +VFNTEAHPL +
Sbjct: 675 METFFLGETLKYLYLLFGDSDMLPLDRYVFNTEAHPLPV 791
Score = 40.5 bits (82), Expect(5) = 1e-036
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +3 / +3
Query: 1341 MNLAKELARTCYNFYQTTPTKLAGENYFFHT 1433
+ LA++LA+TCY Y T T LA E FHT
Sbjct: 312 LKLAEDLAKTCYEMYSVTTTGLAPEIAHFHT 404
Score = 35.4 bits (71), Expect(5) = 1e-036
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +3 / +3
Query: 1242 GSLSDKMDELACFAPGMLALGAS 1310
G KMD L CF PG LALGA+
Sbjct: 180 GHFYPKMDHLVCFLPGTLALGAT 248
Score = 28.6 bits (56), Expect(5) = 1e-036
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3 / +1
Query: 1086 FYEYLLKVWIQGNKTEH 1136
+YEYL+K+W+Q H
Sbjct: 1 YYEYLIKIWLQQRGAGH 51
>gb|CV033797.1|CV033797 RTNACL1_36_E02.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_36_E02_A029 5', mRNA sequence
Length = 754
Score = 70.3 bits (147), Expect(4) = 8e-036
Identities = 25/43 (58%), Positives = 35/43 (81%)
Frame = +3 / +1
Query: 1464 NILRPETVESLMYLWRLTGNKTYQDWGWDIFQAFEKNSRIESG 1592
N+LRPETVESL L R+T ++ Y++WGW IFQAFE ++++ SG
Sbjct: 322 NLLRPETVESLFVLHRITEDEKYREWGWQIFQAFESHTKVASG 450
Score = 63.8 bits (133), Expect(4) = 8e-036
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = +3 / +1
Query: 1638 MQSFFLAETLKYLYLLFSPPSVISFDEWVFNTEAHPLRI 1754
M++FFL ETLKYLYLLF ++ D +VFNTEAHPL +
Sbjct: 505 METFFLGETLKYLYLLFGDSDMLPLDRYVFNTEAHPLPV 621
Score = 39.6 bits (80), Expect(4) = 8e-036
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +3 / +1
Query: 1341 MNLAKELARTCYNFYQTTPTKLAGENYFFHT 1433
+ LA++LA+TCY Y T T LA E FHT
Sbjct: 142 LKLAEDLAKTCYEMYGVTTTGLAPEIAHFHT 234
Score = 34.5 bits (69), Expect(4) = 8e-036
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +3 / +1
Query: 1257 KMDELACFAPGMLALGAS 1310
KMD L CF PG LALGA+
Sbjct: 25 KMDHLVCFLPGTLALGAT 78
>gb|DT635865.1|DT635865 EST1150796 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGL46 3' end, mRNA sequence
Length = 789
Score = 70.3 bits (147), Expect(6) = 1e-031
Identities = 25/43 (58%), Positives = 35/43 (81%)
Frame = +3 / +2
Query: 1464 NILRPETVESLMYLWRLTGNKTYQDWGWDIFQAFEKNSRIESG 1592
N+LRPETVESL L R+T ++ Y++WGW IFQAFE ++++ SG
Sbjct: 500 NLLRPETVESLFVLHRITEDEKYREWGWQIFQAFESHTKVASG 628
Score = 40.5 bits (82), Expect(6) = 1e-031
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +3 / +2
Query: 1341 MNLAKELARTCYNFYQTTPTKLAGENYFFHT 1433
+ LA++LA+TCY Y T T LA E FHT
Sbjct: 320 LKLAEDLAKTCYEMYSVTTTGLAPEIAHFHT 412
Score = 40.0 bits (81), Expect(6) = 1e-031
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +3 / +2
Query: 1638 MQSFFLAETLKYLYLLFSPPSVISFD 1715
M++FFL ETLKYLYLLF ++ D
Sbjct: 683 METFFLGETLKYLYLLFGDSDMLPLD 760
Score = 35.4 bits (71), Expect(6) = 1e-031
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +3 / +2
Query: 1242 GSLSDKMDELACFAPGMLALGAS 1310
G KMD L CF PG LALGA+
Sbjct: 188 GHFYPKMDHLVCFLPGTLALGAT 256
Score = 28.6 bits (56), Expect(6) = 1e-031
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3 / +3
Query: 1086 FYEYLLKVWIQGNKTEH 1136
+YEYL+K+W+Q H
Sbjct: 9 YYEYLIKIWLQQRGAGH 59
Score = 24.4 bits (47), Expect(6) = 1e-031
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +3 / +1
Query: 1719 WVFNTEAHP 1745
+VFNTEAHP
Sbjct: 763 YVFNTEAHP 789
>gb|BQ703174.1|BQ703174 NXSI_137_E05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_137_E05 5' similar to Arabidopsis thaliana
sequence At1g51590 mannosyl-oligosaccharide
1,2-alpha-mannosidase, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 253
Score = 125 bits (267), Expect(2) = 7e-031
Identities = 47/68 (69%), Positives = 58/68 (85%)
Frame = +3 / +3
Query: 1047 SYSTITFGAMGDSFYEYLLKVWIQGNKTEHVKHYRQMWETSMEGLLSLTKKTTPSNYYYI 1226
+YS +TFGAMGDSFYEYLLKVWIQGNKT+ VKHYR+MWE SM+GL+ L KK++PS+Y YI
Sbjct: 48 TYSKVTFGAMGDSFYEYLLKVWIQGNKTDGVKHYREMWEXSMQGLMKLIKKSSPSSYTYI 227
Query: 1227 CEKNGGSL 1250
+G +L
Sbjct: 228 AXXSGXAL 251
Score = 30.9 bits (61), Expect(2) = 7e-031
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3 / +3
Query: 1005 GLLPIYINPHSGTA 1046
GLLPIY+NP+SG A
Sbjct: 3 GLLPIYVNPNSGHA 44
>gb|DR686409.1|DR686409 EST1076487 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABF72 3' end, mRNA sequence
Length = 785
Score = 89.5 bits (189), Expect(4) = 2e-030
Identities = 38/89 (42%), Positives = 56/89 (62%)
Frame = +3 / +1
Query: 870 GDSILADSGTEQLEFIALSQRTGDPKYQQKAENVIKQLQKIYPSDGLLPIYINPHSGTAS 1049
G S ++ + QLEF LS+ +GDPKY + A V++ + + +GL+PIYI+P SG S
Sbjct: 1 GLSSTSEVTSVQLEFWYLSKISGDPKYGKAAMKVLEHFKTLPKVEGLVPIYISPQSGQFS 180
Query: 1050 YSTITFGAMGDSFYEYLLKVWIQGNKTEH 1136
I G+ GDS+YEYL+K+W+Q H
Sbjct: 181 GQNIRLGSRGDSYYEYLIKIWLQQRGAGH 267
Score = 37.7 bits (76), Expect(4) = 2e-030
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +3 / +1
Query: 1341 MNLAKELARTCYNFYQTTPTKLAGENYFFHT 1433
+ LA++L +TCY Y T T LA E FHT
Sbjct: 529 LKLAEDLTKTCYEMYGVTTTGLAPEIAHFHT 621
Score = 36.3 bits (73), Expect(4) = 2e-030
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = +3 / +1
Query: 1464 NILRPETVESLMYLWRLTGNKTYQD 1538
N+LRPETVESL L R+T ++ Y++
Sbjct: 709 NLLRPETVESLFVLHRITEDEKYRE 783
Score = 35.4 bits (71), Expect(4) = 2e-030
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +3 / +1
Query: 1242 GSLSDKMDELACFAPGMLALGAS 1310
G KMD L CF PG LALGA+
Sbjct: 397 GHFYPKMDHLVCFLPGTLALGAT 465
>gb|DR019543.1|DR019543 STRS1_30_F06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_30_F06_A034 5', mRNA sequence
Length = 840
Score = 89.5 bits (189), Expect(4) = 2e-028
Identities = 38/90 (42%), Positives = 56/90 (62%)
Frame = +3 / +1
Query: 867 NGDSILADSGTEQLEFIALSQRTGDPKYQQKAENVIKQLQKIYPSDGLLPIYINPHSGTA 1046
+G S ++ + QLEF LS+ +GDPKY + A V++ + + +GL+PIYI P SG
Sbjct: 88 DGLSSTSEVTSVQLEFWYLSKISGDPKYGKAAMKVLEHFKTLPKVEGLVPIYIRPQSGQF 267
Query: 1047 SYSTITFGAMGDSFYEYLLKVWIQGNKTEH 1136
S I G+ GDS+YEYL+K+W+Q H
Sbjct: 268 SGQNIRLGSRGDSYYEYLIKIWLQQRGAGH 357
Score = 39.6 bits (80), Expect(4) = 2e-028
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +3 / +1
Query: 1341 MNLAKELARTCYNFYQTTPTKLAGENYFFHT 1433
+ LA++LA+TCY Y T T LA E FHT
Sbjct: 619 LKLAEDLAKTCYEMYGVTTTGLAPEIAHFHT 711
Score = 35.4 bits (71), Expect(4) = 2e-028
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +3 / +1
Query: 1242 GSLSDKMDELACFAPGMLALGAS 1310
G KMD L CF PG LALGA+
Sbjct: 487 GHFYPKMDHLVCFLPGTLALGAT 555
Score = 27.6 bits (54), Expect(4) = 2e-028
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3 / +1
Query: 1464 NILRPETVESLMYL 1505
N+LRPETVESL L
Sbjct: 799 NLLRPETVESLFVL 840
>gb|DT637670.1|DT637670 EST1152601 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMH627 3' end, mRNA sequence
Length = 839
Score = 95.5 bits (202), Expect(2) = 9e-025
Identities = 39/71 (54%), Positives = 48/71 (67%)
Frame = +3 / +3
Query: 438 KREKVKEAMLHAWNSYVKYAWGMDELQPQSKNGINSFGGLGATLVDSLDTLYIMGLKDEF 617
++ KV EA +AW Y YA G DEL P SK G++ GGLGAT+VDSLDT IMGL D
Sbjct: 477 RQTKVVEAFQYAWTGYKNYAMGSDELMPLSKRGVDGLGGLGATIVDSLDTAMIMGLDDIV 656
Query: 618 QKARDWVAESL 650
Q+A W+ +SL
Sbjct: 657 QEAGSWIEKSL 689
Score = 40.0 bits (81), Expect(2) = 9e-025
Identities = 15/21 (71%), Positives = 20/21 (95%)
Frame = +3 / +2
Query: 675 SVFETTIRVVGGLLSSYDLSG 737
++FETTIR++GGLLS+Y LSG
Sbjct: 719 NLFETTIRILGGLLSAYHLSG 781
>gb|DR692650.1|DR692650 EST1082738 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADO66 3' end, mRNA sequence
Length = 826
Score = 95.5 bits (202), Expect(2) = 9e-025
Identities = 39/71 (54%), Positives = 48/71 (67%)
Frame = +3 / +1
Query: 438 KREKVKEAMLHAWNSYVKYAWGMDELQPQSKNGINSFGGLGATLVDSLDTLYIMGLKDEF 617
++ KV EA +AW Y YA G DEL P SK G++ GGLGAT+VDSLDT IMGL D
Sbjct: 469 RQTKVVEAFQYAWTGYKNYAMGSDELMPLSKRGVDGLGGLGATIVDSLDTAMIMGLDDIV 648
Query: 618 QKARDWVAESL 650
Q+A W+ +SL
Sbjct: 649 QEAGSWIEKSL 681
Score = 40.0 bits (81), Expect(2) = 9e-025
Identities = 15/21 (71%), Positives = 20/21 (95%)
Frame = +3 / +3
Query: 675 SVFETTIRVVGGLLSSYDLSG 737
++FETTIR++GGLLS+Y LSG
Sbjct: 711 NLFETTIRILGGLLSAYHLSG 773
>gb|BI643905.1|BI643905 NXPV_126_H07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_126_H07 5' similar to Arabidopsis
thaliana sequence At3g21160 putative alpha
1,2-mannosidase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 216
Score = 109 bits (232), Expect = 1e-022
Identities = 42/58 (72%), Positives = 51/58 (87%)
Frame = +3 / +1
Query: 1137 VKHYRQMWETSMEGLLSLTKKTTPSNYYYICEKNGGSLSDKMDELACFAPGMLALGAS 1310
VKHYR+MWE SM+GL+ L KK++PS+Y YI E++G +L DKMDELACFAPGMLALGAS
Sbjct: 1 VKHYREMWERSMQGLMKLIKKSSPSSYTYIAERSGSALIDKMDELACFAPGMLALGAS 174
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,195,899,398
Number of Sequences: 355925
Number of extensions: 18385148
Number of successful extensions: 77884
Number of sequences better than 1.0e-020: 15
length of database: 72,425,745
effective HSP length: 55
effective length of database: 52,849,870
effective search space used: 36677809780
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)