TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAH2a02.xg.2.1
(644 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR691891.1|DR691891 EST1081978 Normalized pine embryo li... 407 e-113
dbj|BD235988.1| Materials and method for modification of pl... 292 2e-078
gb|AY789650.1| Pinus taeda cellulose synthase catalytic sub... 206 2e-075
gb|AY262821.1| Pinus radiata cellulose synthase (CesA2) mRN... 206 3e-073
gb|AY789651.1| Pinus taeda cellulose synthase catalytic sub... 200 7e-073
gb|DR384721.1|DR384721 RTHG1_4_D04.b1_A029 Roots plus added... 203 1e-072
gb|AY789652.1| Pinus taeda cellulose synthase catalytic sub... 190 1e-069
gb|AY639654.1| Pinus radiata cellulose synthase catalytic s... 190 1e-069
dbj|BD236020.1| Materials and method for modification of pl... 190 1e-069
gb|AY262820.1| Pinus radiata cellulose synthase (CesA10) mR... 196 7e-069
gb|BQ698872.1|BQ698872 NXRV116_D12_F NXRV (Nsf Xylem Root w... 164 9e-061
gb|AA556522.1|AA556522 377 Loblolly pine C Pinus taeda cDNA... 105 3e-056
gb|CF668299.1|CF668299 RTCNT1_35_D11.g1_A029 Root control P... 200 1e-055
gb|DR059426.1|DR059426 RTNIT1_17_D03.g1_A029 Roots minus ni... 206 1e-052
gb|AY262818.1| Pinus radiata cellulose synthase (CesA7) mRN... 200 6e-051
gb|BQ700148.1|BQ700148 NXRV101_G08_F NXRV (Nsf Xylem Root w... 124 7e-049
gb|AA556640.1|AA556640 495 Loblolly pine C Pinus taeda cDNA... 176 2e-043
dbj|BD236018.1| Materials and method for modification of pl... 136 2e-038
gb|BF169757.1|BF169757 NXCI_128_G07_F NXCI (Nsf Xylem Compr... 143 1e-033
gb|BQ701506.1|BQ701506 NXSI_065_D05_F NXSI (Nsf Xylem Side ... 127 1e-028
gb|AY262817.1| Pinus radiata cellulose synthase (CesA6) mRN... 117 8e-026
>gb|DR691891.1|DR691891 EST1081978 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADF24 3' end, mRNA sequence
Length = 788
Score = 407 bits (883), Expect = e-113
Identities = 159/191 (83%), Positives = 176/191 (92%)
Frame = +2 / +2
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
LSPYRLLI +RM VL LFLTWR+K+ N DA WLWGMS+VCELWF FSWLLDQLPKLCP+N
Sbjct: 200 LSPYRLLIFLRMGVLALFLTWRVKNPNTDAYWLWGMSIVCELWFAFSWLLDQLPKLCPIN 379
Query: 182 RATDLAVLKDKFETPTPSNPTGRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPV 361
R+TDLAVLKDKFE+PT NP GRSDLPG+D FVSTADPEKEPPLVTANTILSIL+ADYPV
Sbjct: 380 RSTDLAVLKDKFESPTGDNPAGRSDLPGIDCFVSTADPEKEPPLVTANTILSILSADYPV 559
Query: 362 EKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVR 541
EKL+CYVSDDGGALLTFEAMAEAASFA++WVPFCRKHNIEPRNPD+YF+ +DP KNK+R
Sbjct: 560 EKLACYVSDDGGALLTFEAMAEAASFADIWVPFCRKHNIEPRNPDTYFSSTRDPTKNKLR 739
Query: 542 QDFVKDRRRVK 574
DFVKDRRRV+
Sbjct: 740 PDFVKDRRRVR 772
Score = 209 bits (450), Expect = 2e-053
Identities = 99/156 (63%), Positives = 109/156 (69%)
Frame = -3 / -3
Query: 471 CLRQKGTHIXXXXXXXXXXXKVRRAPPSSET*QESFSTG*SAARMDRIVFAVTSGGSFSG 292
CLRQKGT I VRRAPPSS+T*Q SFSTG*SA R+DRIVFAVTSGGSFSG
Sbjct: 669 CLRQKGTQISAKLAASAMASNVRRAPPSSDT*QASFSTG*SAERIDRIVFAVTSGGSFSG 490
Query: 291 SAVDTNISSPGKSDRPVGLDGVGVSNLSFRTARSVARFTGHSFGSWSSSHEKPNQSSQTT 112
SAV+T S PGKSD P GL VG SNLS RTARSV R GH+FG+ SSSHEK N +S T
Sbjct: 489 SAVETKQSIPGKSDLPAGLSPVGDSNLSLRTARSVERLIGHNFGN*SSSHEKANHNSHTI 310
Query: 111 DMPQSQMASSFLCLILHVRNRPRTAMRIRMRSLYGL 4
DMP +Q AS L VRN RT + ++RSL GL
Sbjct: 309 DMPHNQYASVLGFLTRQVRNSARTPILRKIRSL*GL 202
Score = 109 bits (232), Expect(2) = 7e-043
Identities = 52/94 (55%), Positives = 63/94 (67%)
Frame = -2 / -2
Query: 550 KILANLVLVWVLLKIEVAVRIARLNVVLATERNPHISKASSFSHGFKSQESPSIIRNIAR 371
K+ VL V E+++RIA NV+LATERNP+I KA SF HGFK ++S SII +IA
Sbjct: 748 KVWTQFVLGRVTCTAEISIRIAGFNVMLATERNPNICKACSFCHGFKCEKSSSII*HIAG 569
Query: 370 KLLHRVVSSKDGQNSVCCDQWRFFLRISSRYKYI 269
KLLH V+ KD Q+ VC DQW FL ISS K I
Sbjct: 568 KLLHWVIGRKD*QDCVCSDQWWLFLWISSGDKTI 467
Score = 85.4 bits (180), Expect(3) = 4e-026
Identities = 36/59 (61%), Positives = 41/59 (69%)
Frame = +1 / +1
Query: 277 CIYC*SGERTSTGHSKHYSVHPCC*LPCGEAFLLCF**WRGSPDF*SHG*SC*LC*YVG 453
C++C*S ER +TGH KH V+P C LP GEA LLC *WR S *SHG SC LC Y+G
Sbjct: 475 CLHC*SRERATTGHCKHNPVNPFCRLPSGEACLLCVR*WRSSSHI*SHGRSCKLCRYLG 651
Score = 84.9 bits (179), Expect(2) = 7e-043
Identities = 35/75 (46%), Positives = 54/75 (72%)
Frame = -2 / -2
Query: 226 WGLKLVFQDGKVSGPVHRAQLWQLVEQP*KTKPEFADNRHAPEPNGILILVLNSPCKEQT 47
W LKLV ++ K+SG ++R Q WQL++ P*++KP F NRHAP P + I VL+SP ++
Sbjct: 424 W*LKLVLENSKISGAINRTQFWQLIQ*P*ESKP*FTYNRHAP*PICVGIRVLDSPSEK*C 245
Query: 46 KDGHADKNEKPVWAE 2
++ H+ +++KPV AE
Sbjct: 244 QNTHSQEDKKPVGAE 200
Score = 51.5 bits (106), Expect(3) = 4e-026
Identities = 26/55 (47%), Positives = 30/55 (54%)
Frame = +3 / +3
Query: 63 GELSTRMRMPFGSGACLLSANSGLVFHGCSTSCQSCAL*TGPLTLPS*KTSLRPQ 227
GE T + G GACLL N GL+ HG SCQ+C L PL L +TSL Q
Sbjct: 261 GESRTLIPTHIGYGACLLYVNYGLLSHGYWISCQNCVLLIAPLILLFSRTSLSHQ 425
Score = 21.7 bits (41), Expect(3) = 4e-026
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2 / +1
Query: 521 PYKNKVRQDFVKDRRRVKREYDE 589
PY+ ++ + + KREYDE
Sbjct: 718 PYQEQIASRLCQGP*KGKREYDE 786
>dbj|BD235988.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 400
Score = 292 bits (631), Expect = 2e-078
Identities = 115/133 (86%), Positives = 124/133 (93%)
Frame = +2 / +1
Query: 44 LGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVNRATDLAVLKDKFET 223
L LFLTWR+K+ N DA WLWGMS+VCELWF FSWLLDQLPKLCP+NR+TDLAVLKDKFE+
Sbjct: 1 LALFLTWRVKNPNTDAYWLWGMSIVCELWFAFSWLLDQLPKLCPINRSTDLAVLKDKFES 180
Query: 224 PTPSNPTGRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGAL 403
PT NP GRSDLPG+D FVSTADPEKEPPLVTANTILSIL+ADYPVEKL+CYVSDDGGAL
Sbjct: 181 PTGDNPAGRSDLPGIDCFVSTADPEKEPPLVTANTILSILSADYPVEKLACYVSDDGGAL 360
Query: 404 LTFEAMAEAASFA 442
LTFEAMAEAASFA
Sbjct: 361 LTFEAMAEAASFA 399
Score = 179 bits (386), Expect = 1e-044
Identities = 84/119 (70%), Positives = 91/119 (76%)
Frame = -3 / -3
Query: 408 VRRAPPSSET*QESFSTG*SAARMDRIVFAVTSGGSFSGSAVDTNISSPGKSDRPVGLDG 229
VRRAPPSS+T*Q SFSTG*SA R+DRIVFAVTSGGSFSGSAV+T S PGKSD P GL
Sbjct: 365 VRRAPPSSDT*QASFSTG*SAERIDRIVFAVTSGGSFSGSAVETKQSIPGKSDLPAGLSP 186
Query: 228 VGVSNLSFRTARSVARFTGHSFGSWSSSHEKPNQSSQTTDMPQSQMASSFLCLILHVRN 52
VG SNLS RTARSV R GH+FG+ SSSHEK N +S T DMP +Q AS L VRN
Sbjct: 185 VGDSNLSLRTARSVERLIGHNFGN*SSSHEKANHNSHTIDMPHNQYASVLGFLTRQVRN 9
Score = 83.1 bits (175), Expect(2) = 4e-025
Identities = 35/55 (63%), Positives = 39/55 (70%)
Frame = +1 / +3
Query: 277 CIYC*SGERTSTGHSKHYSVHPCC*LPCGEAFLLCF**WRGSPDF*SHG*SC*LC 441
C++C*S ER +TGH KH V+P C*LP GEA LLC *WR S *SHG SC LC
Sbjct: 234 CLHC*SRERATTGHCKHNPVNPFC*LPSGEACLLCVR*WRSSSHI*SHGRSCKLC 398
Score = 73.5 bits (154), Expect(2) = 4e-028
Identities = 35/57 (61%), Positives = 40/57 (70%)
Frame = -2 / -2
Query: 439 KASSFSHGFKSQESPSIIRNIARKLLHRVVSSKDGQNSVCCDQWRFFLRISSRYKYI 269
KA SF HGFK ++S SII +IA KLLH V+S KD Q+ VC DQW FL ISS K I
Sbjct: 396 KACSFCHGFKCEKSSSII*HIAGKLLHWVISRKD*QDCVCSDQWWLFLWISSGDKTI 226
Score = 71.2 bits (149), Expect(2) = 4e-028
Identities = 29/58 (50%), Positives = 42/58 (72%)
Frame = -2 / -2
Query: 226 WGLKLVFQDGKVSGPVHRAQLWQLVEQP*KTKPEFADNRHAPEPNGILILVLNSPCKE 53
W LKLV ++ K+SG ++R Q WQL++ P*++KP F NRHAP P + I VL+SP ++
Sbjct: 183 W*LKLVLENSKISGAINRTQFWQLIQ*P*ESKP*FTYNRHAP*PICVGIRVLDSPSEK 10
Score = 51.5 bits (106), Expect(2) = 4e-025
Identities = 26/55 (47%), Positives = 30/55 (54%)
Frame = +3 / +2
Query: 63 GELSTRMRMPFGSGACLLSANSGLVFHGCSTSCQSCAL*TGPLTLPS*KTSLRPQ 227
GE T + G GACLL N GL+ HG SCQ+C L PL L +TSL Q
Sbjct: 20 GESRTLIPTHIGYGACLLYVNYGLLSHGYWISCQNCVLLIAPLILLFSRTSLSHQ 184
>gb|AY789650.1| Pinus taeda cellulose synthase catalytic subunit (CesA1) mRNA,
complete cds
Length = 3127
Score = 206 bits (445), Expect(2) = 2e-075
Identities = 83/129 (64%), Positives = 101/129 (78%)
Frame = +2 / +1
Query: 254 DLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAA 433
+L +D FVST DP KEPPLVTANT+LSILA DYPVEK+SCYVSDDG A+LTFE M+E A
Sbjct: 796 ELAAVDFFVSTVDPLKEPPLVTANTVLSILAVDYPVEKVSCYVSDDGAAMLTFETMSETA 975
Query: 434 SFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRINGL 613
FA WVPFC+ NIEPR P+ YF+LK D K+KV+ +FVK+RR +KREY+E+KVRIN L
Sbjct: 976 EFARKWVPFCKNFNIEPRAPEFYFSLKVDYLKDKVQPNFVKERRAMKREYEEYKVRINAL 1155
Query: 614 PDSIRRRSD 640
++ D
Sbjct: 1156 VAKAQKTPD 1182
Score = 96.4 bits (204), Expect(2) = 2e-075
Identities = 35/75 (46%), Positives = 52/75 (69%)
Frame = +2 / +1
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
L PYR+++++R+ VLGLF ++R+++ E A LW SV+CE+WF SW+LDQ PK P+N
Sbjct: 559 LQPYRMVVIMRLIVLGLFFSYRVQNPVESAFGLWMTSVICEIWFALSWILDQFPKWNPIN 738
Query: 182 RATDLAVLKDKFETP 226
R T L ++E P
Sbjct: 739 RETFTDRLSLRYERP 783
>gb|AY262821.1| Pinus radiata cellulose synthase (CesA2) mRNA, partial cds
Length = 3603
Score = 206 bits (445), Expect(2) = 3e-073
Identities = 82/121 (67%), Positives = 100/121 (82%)
Frame = +2 / +1
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S L +DIFVST DP KEPPLVTANT+LSIL+ DYPV+K+SCYVSDDG A+LTFE+++E
Sbjct: 1000 SQLAAIDIFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGAAMLTFESLSET 1179
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRING 610
+ FA WVPFC+K NIEPR P+ YF+LK D K+KV+ FVK+RR +KREY+EFKVRIN
Sbjct: 1180 SEFARKWVPFCKKFNIEPRAPEWYFSLKMDYLKDKVQPTFVKERRAMKREYEEFKVRINA 1359
Query: 611 L 613
L
Sbjct: 1360 L 1362
Score = 89.0 bits (188), Expect(2) = 3e-073
Identities = 34/73 (46%), Positives = 50/73 (68%)
Frame = +2 / +1
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
++PYR++I+IR+ VL +F +RI H +A LW SV+CE+WF SW+LDQ PK P+N
Sbjct: 766 INPYRMVIVIRLFVLCVFFRYRIMHPVNNAYGLWFTSVICEVWFAISWILDQFPKWLPIN 945
Query: 182 RATDLAVLKDKFE 220
R T L L +++
Sbjct: 946 RETYLDRLALRYD 984
>gb|AY789651.1| Pinus taeda cellulose synthase catalytic subunit (CesA2) mRNA,
complete cds
Length = 3478
Score = 200 bits (432), Expect(2) = 7e-073
Identities = 79/128 (61%), Positives = 101/128 (78%)
Frame = +2 / +1
Query: 257 LPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAAS 436
L +D FVST DP KEPPL+TANT+LSILAADYPV+++SCYVSDDG ++LTF++M E +
Sbjct: 1021 LAPVDFFVSTVDPLKEPPLITANTVLSILAADYPVDRVSCYVSDDGASMLTFDSMTETSE 1200
Query: 437 FANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRINGLP 616
FA WVPFC+K++IEPR PD YF+ K D K+KV+ FVK+RR +KREY+EFKVRIN L
Sbjct: 1201 FARKWVPFCKKYSIEPRAPDFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALV 1380
Query: 617 DSIRRRSD 640
++ D
Sbjct: 1381 SKAQKTPD 1404
Score = 93.6 bits (198), Expect(2) = 7e-073
Identities = 32/73 (43%), Positives = 52/73 (71%)
Frame = +2 / +1
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
++PYR++I++R+ +LG F +R+ + +DA+ LW S++CE+WF FSW+LDQ PK P+
Sbjct: 781 INPYRIVIVLRLIILGFFFRYRLMNPAKDALGLWLTSIICEIWFAFSWILDQFPKWFPIT 960
Query: 182 RATDLAVLKDKFE 220
R T L L ++E
Sbjct: 961 RETYLDRLSMRYE 999
>gb|DR384721.1|DR384721 RTHG1_4_D04.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_4_D04_A029 3', mRNA sequence
Length = 749
Score = 203 bits (437), Expect(2) = 1e-072
Identities = 80/121 (66%), Positives = 99/121 (81%)
Frame = +2 / -1
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S L G+DIFVST DP KEPPLVTANT+LSILA DYPV+K+SCYVSDDG A+LTFE ++E
Sbjct: 476 SQLAGVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFETLSET 297
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRING 610
+ FA WVPFC+K++IEPR P+ YF K D K+KV+ FVK+RR +KREY+E+K+RIN
Sbjct: 296 SEFARKWVPFCKKYSIEPRAPEFYFAQKIDYLKDKVQPSFVKERRAMKREYEEYKIRINA 117
Query: 611 L 613
L
Sbjct: 116 L 114
Score = 90.9 bits (192), Expect(2) = 1e-072
Identities = 33/73 (45%), Positives = 52/73 (71%)
Frame = +2 / -1
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
L+PYR++I++R+ ++G+F +R+ +DA LW +SV+CE+WF SW+LDQ PK P+N
Sbjct: 710 LTPYRIVIILRLIIVGVFFQYRVTTPVKDAYPLWLVSVICEVWFAVSWILDQFPKWMPIN 531
Query: 182 RATDLAVLKDKFE 220
R T L L +F+
Sbjct: 530 RETYLDRLSLRFD 492
Score = 79.9 bits (168), Expect(2) = 8e-023
Identities = 40/71 (56%), Positives = 43/71 (60%)
Frame = -3 / +1
Query: 462 QKGTHIXXXXXXXXXXXKVRRAPPSSET*QESFSTG*SAARMDRIVFAVTSGGSFSGSAV 283
Q GTH KV A PSSET* E+ STG*S AR+DR VFAVT GGSF GS V
Sbjct: 265 QNGTHFLANSEVSERVSKVNIAAPSSET*HETLSTG*STARIDRTVFAVTRGGSFRGSTV 444
Query: 282 DTNISSPGKSD 250
T IS+P D
Sbjct: 445 LTKISTPAN*D 477
Score = 46.9 bits (96), Expect(2) = 8e-023
Identities = 25/74 (33%), Positives = 37/74 (50%)
Frame = -3 / +1
Query: 222 VSNLSFRTARSVARFTGHSFGSWSSSHEKPNQSSQTTDMPQSQMASSFLCLILHVRNRPR 43
+SNL +R V+R G G+WS H+ NQ+S T+ QS AS + + + P
Sbjct: 490 LSNLKESLSRYVSRLMGIHLGNWSRIHDTANQTSHITETSQSGYASLTGVVTRY*KKTPT 669
Query: 42 TAMRIRMRSLYGLS 1
R + LYG+S
Sbjct: 670 IMSRRIITILYGVS 711
>gb|AY789652.1| Pinus taeda cellulose synthase catalytic subunit (CesA3) mRNA,
complete cds
Length = 3959
Score = 190 bits (410), Expect(2) = 1e-069
Identities = 76/121 (62%), Positives = 97/121 (80%)
Frame = +2 / +3
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S L +D+FVST DP KEPPLVTANT+LSIL+ DYPV+ +SCYVSDDG ++LTFE+++E
Sbjct: 1236 SMLAPVDLFVSTVDPLKEPPLVTANTVLSILSVDYPVDNVSCYVSDDGASMLTFESLSET 1415
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRING 610
+ FA WVPFC+K +IEPR P+ YF+ K D K+K + FVK+RR +KREY+EFKVRIN
Sbjct: 1416 SEFARKWVPFCKKFDIEPRAPEIYFSQKIDYLKDKFQPTFVKERRAMKREYEEFKVRINR 1595
Query: 611 L 613
L
Sbjct: 1596 L 1598
Score = 93.2 bits (197), Expect(2) = 1e-069
Identities = 34/73 (46%), Positives = 53/73 (72%)
Frame = +2 / +3
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
++PYR++I+IR+ VLG+FL +R+ + ++A LW S+VCE+WF SW+LDQ PK P++
Sbjct: 1002 INPYRMVIVIRLIVLGIFLRYRLLNPVKNAYGLWATSIVCEIWFALSWILDQFPKWLPIS 1181
Query: 182 RATDLAVLKDKFE 220
R T L L ++E
Sbjct: 1182 RETYLDRLSLRYE 1220
>gb|AY639654.1| Pinus radiata cellulose synthase catalytic subunit (CesA1) mRNA,
complete cds
Length = 3911
Score = 190 bits (410), Expect(2) = 1e-069
Identities = 76/121 (62%), Positives = 97/121 (80%)
Frame = +2 / +1
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S L +D+FVST DP KEPPLVTANT+LSIL+ DYPV+ +SCYVSDDG ++LTFE+++E
Sbjct: 1246 SMLAPVDLFVSTVDPLKEPPLVTANTVLSILSVDYPVDNVSCYVSDDGASMLTFESLSET 1425
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRING 610
+ FA WVPFC+K +IEPR P+ YF+ K D K+K + FVK+RR +KREY+EFKVRIN
Sbjct: 1426 SEFARKWVPFCKKFDIEPRAPEIYFSQKIDYLKDKFQPTFVKERRAMKREYEEFKVRINR 1605
Query: 611 L 613
L
Sbjct: 1606 L 1608
Score = 93.2 bits (197), Expect(2) = 1e-069
Identities = 34/73 (46%), Positives = 53/73 (72%)
Frame = +2 / +1
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
++PYR++I+IR+ VLG+FL +R+ + ++A LW S+VCE+WF SW+LDQ PK P++
Sbjct: 1012 INPYRMVIVIRLIVLGIFLRYRLLNPVKNAYGLWATSIVCEIWFALSWILDQFPKWLPIS 1191
Query: 182 RATDLAVLKDKFE 220
R T L L ++E
Sbjct: 1192 RETYLDRLSLRYE 1230
>dbj|BD236020.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 3851
Score = 190 bits (410), Expect(2) = 1e-069
Identities = 76/121 (62%), Positives = 97/121 (80%)
Frame = +2 / +3
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S L +D+FVST DP KEPPLVTANT+LSIL+ DYPV+ +SCYVSDDG ++LTFE+++E
Sbjct: 1230 SMLAPVDLFVSTVDPLKEPPLVTANTVLSILSVDYPVDNVSCYVSDDGASMLTFESLSET 1409
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRING 610
+ FA WVPFC+K +IEPR P+ YF+ K D K+K + FVK+RR +KREY+EFKVRIN
Sbjct: 1410 SEFARKWVPFCKKFDIEPRAPEIYFSQKIDYLKDKFQPTFVKERRAMKREYEEFKVRINR 1589
Query: 611 L 613
L
Sbjct: 1590 L 1592
Score = 93.2 bits (197), Expect(2) = 1e-069
Identities = 34/73 (46%), Positives = 53/73 (72%)
Frame = +2 / +3
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
++PYR++I+IR+ VLG+FL +R+ + ++A LW S+VCE+WF SW+LDQ PK P++
Sbjct: 996 INPYRMVIVIRLIVLGIFLRYRLLNPVKNAYGLWATSIVCEIWFALSWILDQFPKWLPIS 1175
Query: 182 RATDLAVLKDKFE 220
R T L L ++E
Sbjct: 1176 RETYLDRLSLRYE 1214
>gb|AY262820.1| Pinus radiata cellulose synthase (CesA10) mRNA, complete cds
Length = 4428
Score = 196 bits (423), Expect(2) = 7e-069
Identities = 80/121 (66%), Positives = 97/121 (80%)
Frame = +2 / +1
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S L +DIFVST DP KEPPLVTANT+LSIL+ DYPV+K+SCYVSDDG A+LTFEA++E
Sbjct: 1753 SQLAAVDIFVSTVDPMKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGAAMLTFEALSET 1932
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRING 610
+ FA WVPF +K +IEPR P+ YF K D K+KV+ FVK+RR +KREY+EFKVRIN
Sbjct: 1933 SEFARKWVPFVKKFDIEPRAPEWYFAQKIDYLKDKVQPSFVKERRAMKREYEEFKVRINA 2112
Query: 611 L 613
L
Sbjct: 2113 L 2115
Score = 84.5 bits (178), Expect(2) = 7e-069
Identities = 30/65 (46%), Positives = 45/65 (69%)
Frame = +2 / +1
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
++PYR++I++R+ +L F +RI + +A LW SV+CE+WF SW+LDQ PK P+N
Sbjct: 1519 INPYRMVIVLRLVILCFFFRYRILNPVRNAYGLWFTSVICEIWFAISWILDQFPKWLPIN 1698
Query: 182 RATDL 196
R T L
Sbjct: 1699 RETYL 1713
>gb|BQ698872.1|BQ698872 NXRV116_D12_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV116_D12 5' similar to Arabidopsis thaliana
sequence At5g44030 cellulose synthase catalytic
subunit-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 685
Score = 164 bits (353), Expect(2) = 9e-061
Identities = 67/119 (56%), Positives = 84/119 (70%)
Frame = +2 / +3
Query: 257 LPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAAS 436
L +D FVST DP KEPPL+TANT+LSILAADYPV+++SCYVSDDG ++LTF++M E +
Sbjct: 324 LAPVDFFVSTVDPLKEPPLITANTVLSILAADYPVDRVSCYVSDDGASMLTFDSMTETSE 503
Query: 437 FANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRINGL 613
FA WVPFC+K++IEPR PD YF+ K D K+ + FV R KR F V L
Sbjct: 504 FARKWVPFCKKYSIEPRAPDFYFSQKIDYLKDXXQPTFVXXXRAXKRXXXXFXVXXXAL 680
Score = 89.5 bits (189), Expect(2) = 9e-061
Identities = 31/73 (42%), Positives = 51/73 (69%)
Frame = +2 / +3
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
++PYR++I++R+ +LG F +R+ + +DA+ LW S++CE+WF SW+LDQ PK P+
Sbjct: 84 INPYRIVIVMRLIILGFFFRYRLMNPAKDALGLWLTSIICEIWFACSWILDQFPKWFPIT 263
Query: 182 RATDLAVLKDKFE 220
R T L L ++E
Sbjct: 264 RETYLDRLSMRYE 302
>gb|AA556522.1|AA556522 377 Loblolly pine C Pinus taeda cDNA clone 3C11G, mRNA sequence
Length = 718
Score = 105 bits (223), Expect(3) = 3e-056
Identities = 42/54 (77%), Positives = 47/54 (87%)
Frame = +2 / +1
Query: 254 DLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFE 415
+L +D FVST DP KEPPLVTANT+LSILA DYPVEK+SCYVSDDG A+LTFE
Sbjct: 283 ELAAVDFFVSTVDPLKEPPLVTANTVLSILAVDYPVEKVSCYVSDDGAAMLTFE 444
Score = 96.4 bits (204), Expect(3) = 3e-056
Identities = 35/75 (46%), Positives = 52/75 (69%)
Frame = +2 / +1
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
L PYR+++++R+ VLGLF ++R+++ E A LW SV+CE+WF SW+LDQ PK P+N
Sbjct: 46 LQPYRMVVIMRLIVLGLFFSYRVQNPVESAFGLWMTSVICEIWFALSWILDQFPKWNPIN 225
Query: 182 RATDLAVLKDKFETP 226
R T L ++E P
Sbjct: 226 RETFTDRLSLRYERP 270
Score = 56.1 bits (116), Expect(3) = 3e-056
Identities = 21/44 (47%), Positives = 29/44 (65%)
Frame = +2 / +2
Query: 455 PFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYD 586
PFC+ NI PR P+ YF+LK D K KV +FVK+RR +++
Sbjct: 482 PFCKNFNIXPRXPEFYFSLKVDYLKXKVHPNFVKERRXXNXKFE 613
>gb|CF668299.1|CF668299 RTCNT1_35_D11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_35_D11_A029 5', mRNA sequence
Length = 769
Score = 200 bits (432), Expect(2) = 1e-055
Identities = 79/128 (61%), Positives = 101/128 (78%)
Frame = +2 / +2
Query: 257 LPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAAS 436
L +D FVST DP KEPPL+TANT+LSILAADYPV+++SCYVSDDG ++LTF++M E +
Sbjct: 113 LAPVDFFVSTVDPLKEPPLITANTVLSILAADYPVDRVSCYVSDDGASMLTFDSMTETSE 292
Query: 437 FANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRINGLP 616
FA WVPFC+K++IEPR PD YF+ K D K+KV+ FVK+RR +KREY+EFKVRIN L
Sbjct: 293 FARKWVPFCKKYSIEPRAPDFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALV 472
Query: 617 DSIRRRSD 640
++ D
Sbjct: 473 SKAQKTPD 496
Score = 35.9 bits (72), Expect(2) = 1e-055
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2 / +2
Query: 137 FSWLLDQLPKLCPVNRATDLAVLKDKFE 220
FSW+LDQ PK P+ R T L L ++E
Sbjct: 8 FSWILDQFPKWFPITRETYLDRLSMRYE 91
>gb|DR059426.1|DR059426 RTNIT1_17_D03.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_17_D03_A029 5', mRNA sequence
Length = 862
Score = 206 bits (445), Expect = 1e-052
Identities = 82/121 (67%), Positives = 100/121 (82%)
Frame = +2 / +3
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S L +DIFVST DP KEPPLVTANT+LSIL+ DYPV+K+SCYVSDDG A+LTFE+++E
Sbjct: 66 SQLAAIDIFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGAAMLTFESLSET 245
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRING 610
+ FA WVPFC+K NIEPR P+ YF+LK D K+KV+ FVK+RR +KREY+EFKVRIN
Sbjct: 246 SEFARKWVPFCKKFNIEPRAPEWYFSLKMDYLKDKVQPTFVKERRAMKREYEEFKVRINA 425
Query: 611 L 613
L
Sbjct: 426 L 428
>gb|AY262818.1| Pinus radiata cellulose synthase (CesA7) mRNA, partial cds
Length = 2588
Score = 200 bits (432), Expect = 6e-051
Identities = 79/128 (61%), Positives = 101/128 (78%)
Frame = +2 / +1
Query: 257 LPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAAS 436
L +D FVST DP KEPPL+TANT+LSILAADYPV+++SCYVSDDG ++LTF++M E +
Sbjct: 94 LAPVDFFVSTVDPLKEPPLITANTVLSILAADYPVDRVSCYVSDDGASMLTFDSMTETSE 273
Query: 437 FANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRINGLP 616
FA WVPFC+K++IEPR PD YF+ K D K+KV+ FVK+RR +KREY+EFKVRIN L
Sbjct: 274 FARKWVPFCKKYSIEPRAPDFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALV 453
Query: 617 DSIRRRSD 640
++ D
Sbjct: 454 SKAQKTPD 477
>gb|BQ700148.1|BQ700148 NXRV101_G08_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV101_G08 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 566
Score = 124 bits (266), Expect(2) = 7e-049
Identities = 48/77 (62%), Positives = 60/77 (77%)
Frame = +2 / +3
Query: 257 LPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAAS 436
L +D FVST DP KEPPL+TANT+LSILAADYPV+++SCYVSDDG ++LTF++M E +
Sbjct: 324 LAPVDFFVSTVDPLKEPPLITANTVLSILAADYPVDRVSCYVSDDGASMLTFDSMTETSX 503
Query: 437 FANMWVPFCRKHNIEPR 487
A WVPFC+ E R
Sbjct: 504 XAXKWVPFCKXXXXEXR 554
Score = 89.5 bits (189), Expect(2) = 7e-049
Identities = 31/73 (42%), Positives = 51/73 (69%)
Frame = +2 / +3
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
++PYR++I++R+ +LG F +R+ + +DA+ LW S++CE+WF SW+LDQ PK P+
Sbjct: 84 INPYRIVIVMRLIILGFFFRYRLMNPAKDALGLWLTSIICEIWFACSWILDQFPKWFPIT 263
Query: 182 RATDLAVLKDKFE 220
R T L L ++E
Sbjct: 264 RETYLDRLSMRYE 302
>gb|AA556640.1|AA556640 495 Loblolly pine C Pinus taeda cDNA clone 2C7G, mRNA sequence
Length = 537
Score = 176 bits (378), Expect = 2e-043
Identities = 70/116 (60%), Positives = 90/116 (77%)
Frame = +2 / +3
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S L +D+FVST DP KEPPLVTANT+LSIL+ DYPV+ +SCYVSDDG ++LTFE+++E
Sbjct: 9 SMLAPVDLFVSTVDPLKEPPLVTANTVLSILSVDYPVDNVSCYVSDDGASMLTFESLSET 188
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKV 598
+ FA WVPFC+K +IEPR P+ YF+ K D K+K + FVK RR +K Y+EFKV
Sbjct: 189 SEFARKWVPFCKKFDIEPRAPEIYFSQKIDYLKDKFQPTFVKXRRAMKXXYEEFKV 356
>dbj|BD236018.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 669
Score = 136 bits (291), Expect(2) = 2e-038
Identities = 53/87 (60%), Positives = 68/87 (78%)
Frame = +2 / +2
Query: 248 RSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAE 427
+S+LP +DIF+ TADP KEPPL NT+LS LA YP+ KLSCYVSDDGG+ LTF A+ E
Sbjct: 257 QSNLPPVDIFICTADPFKEPPLTVINTVLSALAVHYPMGKLSCYVSDDGGSPLTFYALLE 436
Query: 428 AASFANMWVPFCRKHNIEPRNPDSYFN 508
A+ FA +W+PFC K++IE R P+ YF+
Sbjct: 437 ASRFAKIWIPFCDKYSIEDRCPEVYFS 517
Score = 43.2 bits (88), Expect(2) = 2e-038
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +2 / +2
Query: 56 LTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVNRATDLAVLKDKFETPTP 232
+ +R+ + + W W + V EL F +SW+LDQ + PV R L +F++ P
Sbjct: 95 ICYRLLYIPSEDSWSWILIFVAELGFSYSWILDQALRWWPVQRTVFPKRLSKRFQSNLP 271
>gb|BF169757.1|BF169757 NXCI_128_G07_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_128_G07 5' similar to Arabidopsis
thaliana sequence At5g17420 cellulose synthase catalytic
subunit (IRX3) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 345
Score = 143 bits (307), Expect = 1e-033
Identities = 58/101 (57%), Positives = 73/101 (72%)
Frame = +2 / +1
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S L +D+FVST DP KEPPLVTANT+LSIL+ DYPV+ +SCYVSDDG +LTFE+++E
Sbjct: 43 SMLAPVDLFVSTVDPLKEPPLVTANTVLSILSVDYPVDNVSCYVSDDGAXMLTFESLSET 222
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFV 553
+ FA WVPFC+K I R P+ YF+ D K K + FV
Sbjct: 223 SEFARKWVPFCKKXXIXXRAPEIYFSXXIDYLKXKFQPXFV 345
>gb|BQ701506.1|BQ701506 NXSI_065_D05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_065_D05 5' similar to Arabidopsis thaliana
sequence At4g32410 cellulose synthase catalytic subunit
(RSW1) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 273
Score = 127 bits (271), Expect = 1e-028
Identities = 50/90 (55%), Positives = 64/90 (71%)
Frame = +2 / +3
Query: 371 SCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDF 550
SCYVSDDG A+LTFE M+E A FA WVPFC+ NIEPR P+ YF+LK D K+K + +F
Sbjct: 3 SCYVSDDGAAMLTFETMSETAEFARKWVPFCKNFNIEPRAPEFYFSLKVDYLKDKXQPNF 182
Query: 551 VKDRRRVKREYDEFKVRINGLPDSIRRRSD 640
VK+RR +KREY+E+KV L ++ D
Sbjct: 183 VKERRAMKREYEEYKVXXXALVAKAQKTPD 272
>gb|AY262817.1| Pinus radiata cellulose synthase (CesA6) mRNA, partial cds
Length = 2489
Score = 117 bits (250), Expect = 8e-026
Identities = 45/84 (53%), Positives = 62/84 (73%)
Frame = +2 / +2
Query: 389 DGGALLTFEAMAEAASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRR 568
+G ++LTF++M E + FA WVPFC+K++IEPR PD YF+ K D K+KV+ FVK+RR
Sbjct: 5 EGASMLTFDSMTETSEFARKWVPFCKKYSIEPRAPDFYFSQKIDYLKDKVQPTFVKERRA 184
Query: 569 VKREYDEFKVRINGLPDSIRRRSD 640
+KREY+EFKVRIN L ++ D
Sbjct: 185 MKREYEEFKVRINALVSKAQKTPD 256
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 337,199,569
Number of Sequences: 355925
Number of extensions: 4957624
Number of successful extensions: 48075
Number of sequences better than 1.0e-020: 28
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 8734658490
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)