TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAF31c07.yg.2.3
         (732 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BX252725.1|BX252725  BX252725 Pinus pinaster differenciat...   105   5e-022
>gb|BX252725.1|BX252725 BX252725 Pinus pinaster differenciating xylem adult Pinus pinaster
           cDNA clone PP069G07, mRNA sequence
          Length = 681

 Score =  105 bits (223), Expect = 5e-022
 Identities = 40/48 (83%), Positives = 46/48 (95%)
 Frame = +2 / +3

                                                           
Query: 389 QDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS 532
           ++A MDWIIHLDTDEL+HPAGAREYSLR+LLLDVP+NVDMV+FPNY S
Sbjct: 3   REANMDWIIHLDTDELLHPAGAREYSLRQLLLDVPNNVDMVVFPNYES 146
  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 314,983,674
Number of Sequences: 355925
Number of extensions: 4042939
Number of successful extensions: 24619
Number of sequences better than 1.0e-020: 2
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 10298270195
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)