TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF31c07.yg.2.3
(732 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX252725.1|BX252725 BX252725 Pinus pinaster differenciat... 105 5e-022
>gb|BX252725.1|BX252725 BX252725 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP069G07, mRNA sequence
Length = 681
Score = 105 bits (223), Expect = 5e-022
Identities = 40/48 (83%), Positives = 46/48 (95%)
Frame = +2 / +3
Query: 389 QDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS 532
++A MDWIIHLDTDEL+HPAGAREYSLR+LLLDVP+NVDMV+FPNY S
Sbjct: 3 REANMDWIIHLDTDELLHPAGAREYSLRQLLLDVPNNVDMVVFPNYES 146
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 314,983,674
Number of Sequences: 355925
Number of extensions: 4042939
Number of successful extensions: 24619
Number of sequences better than 1.0e-020: 2
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 10298270195
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)