TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF31c07.yg.2.1
(352 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR016018.1|DR016018 STRS1_7_D06.b1_A034 Shoot tip pitch ... 38 0.017
gb|CD022310.1|CD022310 NXPV_043_A06_F NXPV (Nsf Xylem Plani... 38 0.032
gb|CF663154.1|CF663154 RTCNT1_1_D01.b1_A029 Root control Pi... 38 0.032
gb|CF664859.1|CF664859 RTCNT1_12_H08.b1_A029 Root control P... 38 0.032
gb|CO200083.1|CO200083 GEO2_5_G07.b1_A032 Root gravitropism... 38 0.032
gb|CX712258.1|CX712258 RTPQ1_1_H03.b2_A032 Roots treated wi... 38 0.032
gb|CX712338.1|CX712338 RTPQ1_1_H03.g1_A032 Roots treated wi... 38 0.032
gb|DR016094.1|DR016094 STRS1_7_D06.g1_A034 Shoot tip pitch ... 38 0.032
gb|DR385830.1|DR385830 RTHG1_11_D07.b1_A029 Roots plus adde... 38 0.032
gb|BX252455.1|BX252455 BX252455 Pinus pinaster differenciat... 36 0.12
gb|CF393820.1|CF393820 RTDS2_1_D02.g1_A021 Drought-stressed... 32 2.0
gb|CF474376.1|CF474376 RTWW2_20_A04.g1_A021 Well-watered lo... 32 2.0
gb|DR019759.1|DR019759 STRS1_32_F02.b1_A034 Shoot tip pitch... 31 2.8
gb|DR079401.1|DR079401 RTFEPL1_11_B11.b1_A029 Roots plus ad... 31 2.8
gb|DR079480.1|DR079480 RTFEPL1_11_B11.g1_A029 Roots plus ad... 31 2.8
gb|DR100938.1|DR100938 STRR1_69_H08.b1_A033 Stem Response R... 31 2.8
gb|DR162116.1|DR162116 RTFE1_15_H02.g1_A029 Roots minus iro... 31 2.8
gb|DR051414.1|DR051414 RTBOR1_30_A04.b1_A029 Roots plus add... 31 2.8
gb|DR089699.1|DR089699 RTAL1_10_F11.b1_A029 Roots plus adde... 31 2.8
dbj|BD262153.1| Composition and methods for the modificatio... 30 7.2
dbj|DD014291.1| Compositions and Methods for the Modificati... 30 7.2
gb|CF666303.1|CF666303 RTCNT1_22_G10.b1_A029 Root control P... 29 9.9
gb|CF666377.1|CF666377 RTCNT1_22_G10.g1_A029 Root control P... 29 9.9
>gb|DR016018.1|DR016018 STRS1_7_D06.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_7_D06_A034 3', mRNA sequence
Length = 664
Score = 37.7 bits (76), Expect(2) = 0.017
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3 / +2
Query: 45 LPWLYYHNVIGVSHFFLLVEG 107
LPW++YH + GV H F L+EG
Sbjct: 311 LPWIHYHELPGVGHLFNLMEG 373
Score = 18.0 bits (33), Expect(2) = 0.017
Identities = 6/11 (54%), Positives = 7/11 (63%)
Frame = +3 / +1
Query: 6 CITGSTSAGLH 38
CI+ AGLH
Sbjct: 268 CISAGDFAGLH 300
>gb|CD022310.1|CD022310 NXPV_043_A06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_043_A06 5' similar to Arabidopsis
thaliana sequence At2g36290 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 185
Score = 37.7 bits (76), Expect = 0.032
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3 / +3
Query: 45 LPWLYYHNVIGVSHFFLLVEG 107
LPW++YH + GV H F L+EG
Sbjct: 36 LPWIHYHELPGVGHLFNLMEG 98
>gb|CF663154.1|CF663154 RTCNT1_1_D01.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_1_D01_A029 3', mRNA sequence
Length = 686
Score = 37.7 bits (76), Expect = 0.032
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3 / +2
Query: 45 LPWLYYHNVIGVSHFFLLVEG 107
LPW++YH + GV H F L+EG
Sbjct: 344 LPWIHYHELPGVGHLFNLMEG 406
>gb|CF664859.1|CF664859 RTCNT1_12_H08.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_12_H08_A029 3', mRNA sequence
Length = 721
Score = 37.7 bits (76), Expect = 0.032
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3 / +3
Query: 45 LPWLYYHNVIGVSHFFLLVEG 107
LPW++YH + GV H F L+EG
Sbjct: 372 LPWIHYHELPGVGHLFNLMEG 434
>gb|CO200083.1|CO200083 GEO2_5_G07.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_5_G07_A032 3', mRNA sequence
Length = 930
Score = 37.7 bits (76), Expect = 0.032
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3 / +1
Query: 45 LPWLYYHNVIGVSHFFLLVEG 107
LPW++YH + GV H F L+EG
Sbjct: 577 LPWIHYHELPGVGHLFNLMEG 639
>gb|CX712258.1|CX712258 RTPQ1_1_H03.b2_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_1_H03_A032 3', mRNA sequence
Length = 876
Score = 37.7 bits (76), Expect = 0.032
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3 / +3
Query: 45 LPWLYYHNVIGVSHFFLLVEG 107
LPW++YH + GV H F L+EG
Sbjct: 600 LPWIHYHELPGVGHLFNLMEG 662
>gb|CX712338.1|CX712338 RTPQ1_1_H03.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_1_H03_A032 5', mRNA sequence
Length = 878
Score = 37.7 bits (76), Expect = 0.032
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3 / +1
Query: 45 LPWLYYHNVIGVSHFFLLVEG 107
LPW++YH + GV H F L+EG
Sbjct: 649 LPWIHYHELPGVGHLFNLMEG 711
>gb|DR016094.1|DR016094 STRS1_7_D06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_7_D06_A034 5', mRNA sequence
Length = 868
Score = 37.7 bits (76), Expect = 0.032
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3 / +1
Query: 45 LPWLYYHNVIGVSHFFLLVEG 107
LPW++YH + GV H F L+EG
Sbjct: 550 LPWIHYHELPGVGHLFNLMEG 612
>gb|DR385830.1|DR385830 RTHG1_11_D07.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_11_D07_A029 3', mRNA sequence
Length = 838
Score = 37.7 bits (76), Expect = 0.032
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3 / +1
Query: 45 LPWLYYHNVIGVSHFFLLVEG 107
LPW++YH + GV H F L+EG
Sbjct: 511 LPWIHYHELPGVGHLFNLMEG 573
>gb|BX252455.1|BX252455 BX252455 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP064G09, mRNA sequence
Length = 549
Score = 35.9 bits (72), Expect = 0.12
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3 / +1
Query: 45 LPWLYYHNVIGVSHFFLLVE 104
LPW++YH + GV H F L+E
Sbjct: 178 LPWIHYHEIPGVGHLFNLME 237
>gb|CF393820.1|CF393820 RTDS2_1_D02.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_1_D02_A021 5', mRNA sequence
Length = 703
Score = 31.8 bits (63), Expect = 2.0
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +2 / -1
Query: 5 LYHGKHICWPTPDSSMVVLSQCHWC 79
LY G H W + S CHWC
Sbjct: 418 LYGGTHNTWKLEPEQKI*CSMCHWC 344
>gb|CF474376.1|CF474376 RTWW2_20_A04.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_20_A04_A021 5', mRNA sequence
Length = 728
Score = 31.8 bits (63), Expect = 2.0
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +2 / -3
Query: 5 LYHGKHICWPTPDSSMVVLSQCHWC 79
LY G H W + S CHWC
Sbjct: 291 LYGGTHNTWKLEPEQKI*CSMCHWC 217
>gb|DR019759.1|DR019759 STRS1_32_F02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_32_F02_A034 3', mRNA sequence
Length = 809
Score = 31.3 bits (62), Expect = 2.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3 / +3
Query: 45 LPWLYYHNVIGVSHFFLLVEG 107
L W++YH + H F+L+EG
Sbjct: 387 LSWIHYHEIPEAGHLFVLMEG 449
>gb|DR079401.1|DR079401 RTFEPL1_11_B11.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_11_B11_A029 3', mRNA sequence
Length = 853
Score = 31.3 bits (62), Expect = 2.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3 / +1
Query: 45 LPWLYYHNVIGVSHFFLLVEG 107
L W++YH + H F+L+EG
Sbjct: 436 LSWIHYHEIPEAGHLFVLMEG 498
>gb|DR079480.1|DR079480 RTFEPL1_11_B11.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_11_B11_A029 5', mRNA sequence
Length = 803
Score = 31.3 bits (62), Expect = 2.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3 / +3
Query: 45 LPWLYYHNVIGVSHFFLLVEG 107
L W++YH + H F+L+EG
Sbjct: 741 LSWIHYHEIPEAGHLFVLMEG 803
>gb|DR100938.1|DR100938 STRR1_69_H08.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_69_H08_A033 3', mRNA sequence
Length = 770
Score = 31.3 bits (62), Expect = 2.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3 / +1
Query: 45 LPWLYYHNVIGVSHFFLLVEG 107
L W++YH + H F+L+EG
Sbjct: 349 LSWIHYHEIPEAGHLFVLMEG 411
>gb|DR162116.1|DR162116 RTFE1_15_H02.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_15_H02_A029 5', mRNA sequence
Length = 717
Score = 31.3 bits (62), Expect = 2.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3 / -3
Query: 45 LPWLYYHNVIGVSHFFLLVEG 107
L W++YH + H F+L+EG
Sbjct: 340 LSWIHYHEIPEAGHLFVLMEG 278
>gb|DR051414.1|DR051414 RTBOR1_30_A04.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_30_A04_A029 3', mRNA sequence
Length = 601
Score = 31.3 bits (62), Expect = 2.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3 / +3
Query: 45 LPWLYYHNVIGVSHFFLLVEG 107
L W++YH + H F+L+EG
Sbjct: 198 LSWIHYHEIPEAGHLFVLMEG 260
>gb|DR089699.1|DR089699 RTAL1_10_F11.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_10_F11_A029 3', mRNA sequence
Length = 620
Score = 31.3 bits (62), Expect = 2.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3 / +1
Query: 45 LPWLYYHNVIGVSHFFLLVEG 107
L W++YH + H F+L+EG
Sbjct: 202 LSWIHYHEIPEAGHLFVLMEG 264
>dbj|BD262153.1| Composition and methods for the modification of gene expression
Length = 1729
Score = 29.9 bits (59), Expect = 7.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2 / -1
Query: 5 LYHGKHICWPTPDSSMVVLSQCHWC 79
++H CWP+ V+L QCH C
Sbjct: 580 VFHPHPSCWPSVG*MSVLLYQCHIC 506
>dbj|DD014291.1| Compositions and Methods for the Modification of Gene Expression
Length = 1729
Score = 29.9 bits (59), Expect = 7.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2 / -1
Query: 5 LYHGKHICWPTPDSSMVVLSQCHWC 79
++H CWP+ V+L QCH C
Sbjct: 580 VFHPHPSCWPSVG*MSVLLYQCHIC 506
>gb|CF666303.1|CF666303 RTCNT1_22_G10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_22_G10_A029 3', mRNA sequence
Length = 493
Score = 29.5 bits (58), Expect = 9.9
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +3 / -3
Query: 36 HQILPWLYYH 65
HQILPW++YH
Sbjct: 134 HQILPWVFYH 105
>gb|CF666377.1|CF666377 RTCNT1_22_G10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_22_G10_A029 5', mRNA sequence
Length = 492
Score = 29.5 bits (58), Expect = 9.9
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +3 / -1
Query: 36 HQILPWLYYH 65
HQILPW++YH
Sbjct: 111 HQILPWVFYH 82
Database: Pinus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:25 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 121,826,114
Number of Sequences: 355925
Number of extensions: 1119324
Number of successful extensions: 41795
Number of sequences better than 10.0: 24
length of database: 72,425,745
effective HSP length: 49
effective length of database: 54,985,420
effective search space used: 3684023140
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)