TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF25f04.yg.3.3
(1599 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR159952.1|DR159952 RTFE1_2_E09.g1_A029 Roots minus iron... 398 e-129
gb|CO167537.1|CO167537 FLD1_69_C02.g1_A029 Root flooded Pin... 208 1e-098
gb|DR169326.1|DR169326 RTPHOS1_31_D02.g1_A029 Roots minus p... 199 5e-092
gb|DR078083.1|DR078083 RTFEPL1_1_G05.g1_A029 Roots plus add... 173 3e-084
gb|CO368479.1|CO368479 RTK1_40_H02.g1_A029 Roots minus pota... 173 1e-082
gb|BX249137.1|BX249137 BX249137 Pinus pinaster differenciat... 171 3e-067
gb|DR692511.1|DR692511 EST1082599 Normalized pine embryo li... 173 6e-062
gb|DT637158.1|DT637158 EST1152089 Normalized pine embryo li... 173 6e-062
gb|CD017385.1|CD017385 NXCI_111_A02_F NXCI (Nsf Xylem Compr... 118 1e-025
>gb|DR159952.1|DR159952 RTFE1_2_E09.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_2_E09_A029 5', mRNA sequence
Length = 801
Score = 398 bits (863), Expect(2) = e-129
Identities = 166/196 (84%), Positives = 178/196 (90%)
Frame = +1 / +1
Query: 256 LIETFVDKAEDLPHVGKQFVPPMMDPVLGDYARNVPDARESEVLSLFATIINKYKGEMLE 435
LIETFVDKAED PH+GKQFV PM+DP+LGDYARNVPDARESEVLSLFATIINKYK M+E
Sbjct: 1 LIETFVDKAEDQPHIGKQFVQPMLDPILGDYARNVPDARESEVLSLFATIINKYKVVMME 180
Query: 436 DVPRIFEAVFQCTLEMITKNFEDYPEHRLKFFSLLRAIGTHCFQALIQLSSQQLKLVIDS 615
DVPRIFEAVF CTLEMITKNFEDYPEHRLKFFSLL AI T+CF+AL LSSQQLKLV+DS
Sbjct: 181 DVPRIFEAVFACTLEMITKNFEDYPEHRLKFFSLLHAIATYCFRALFALSSQQLKLVMDS 360
Query: 616 INWAFRHTERNIAETGLSLLLEILKKFQASGFQNQFYKTYFLTIEQEIFAVLTDTFHKPG 795
I WAFRHTERNIAETGL LLLE+LK FQ S F NQF+++YFLTIEQEIFAVLTDTFHKPG
Sbjct: 361 IIWAFRHTERNIAETGLYLLLEMLKNFQISEFCNQFHQSYFLTIEQEIFAVLTDTFHKPG 540
Query: 796 FKLHVSVLQHLFCAVD 843
FK HV +LQHLFC VD
Sbjct: 541 FKHHVHILQHLFCLVD 588
Score = 277 bits (600), Expect(2) = 2e-086
Identities = 133/195 (68%), Positives = 146/195 (74%)
Frame = -2 / -2
Query: 842 STAQNKCCSTET*SLKPGLWNVSVRTAKISCSIVKK*VL*NWFWNPEAWNFFKISNNRLR 663
ST QNKCC T L PGLWNVSV+TA ISCSIVKK*+ N N + W FF IS ++ R
Sbjct: 587 STRQNKCCRIWTWCLNPGLWNVSVKTANISCSIVKK*LWWN*LQNSDIWKFFSISRSK*R 408
Query: 662 PVSAIFLSVCLNAQLIESITSFNC*LESWINAWKQWVPIARSKEKNLRRCSG*SSKFLVI 483
PVSAIFLSV A ++ES+TSF+C*L++ A KQ V IA S EKN RCSG*SSKFLVI
Sbjct: 407 PVSAIFLSV*RKAHIMESMTSFSC*LDNANKARKQ*VAIAWSNEKNFNRCSG*SSKFLVI 228
Query: 482 ISRVHWKTASNIRGTSSSISPLYLLMIVANKDRTSDSLASGTFLA*SPRTGSIIGGTNCF 303
IS V KTAS IRGTSS I+ LYL +IVAN DRTSDSLASGTF A*SP GS IG TNCF
Sbjct: 227 ISNVQAKTASKIRGTSSIITTLYLFIIVANNDRTSDSLASGTFRA*SPSIGSNIGCTNCF 48
Query: 302 PTCGKSSALSTKVSI 258
P CG SSALST VSI
Sbjct: 47 PICG*SSALSTNVSI 3
Score = 100 bits (212), Expect(3) = 7e-046
Identities = 48/103 (46%), Positives = 64/103 (62%)
Frame = -1 / -1
Query: 564 EAMGANCTKQRKKFEAVLRIIFKVLSNHLKGALENSLKYTRHILKHFPFVLVNDCCKQGQ 385
E + +N + ++F++V RII K+ SNHL A +NS K T +IL H F+LV CK
Sbjct: 309 ETISSNRME**EEFQSVFRIILKIFSNHL*CASKNSFKNTWYILHHNNFILVYYSCK*** 130
Query: 384 NFRLPCIGYISSIITKNRIHHWWYKLLSYMWQIFRLVHKSLDQ 256
NFRL I +I I+TK RI H YKLL YMW IF ++K +Q
Sbjct: 129 NFRLSSIRHIPRIVTKYRIQHRLYKLLPYMWLIFSFIYKCFNQ 1
Score = 98.2 bits (208), Expect(3) = 7e-040
Identities = 51/135 (37%), Positives = 69/135 (51%)
Frame = +3 / +3
Query: 435 GCASYI*GCFPVHP*DDY*EL*RLS*APPQIFFFASCNWHPLLPSINPAFKSAIEACDRF 614
GC +Y * CF +H DDY*+ * LS P +I C+ + L P KSA EAC F
Sbjct: 180 GCTTYF*SCFCLHIRDDY*KF*GLSGTPIEILLITPCDCYLLFPCFVCIIKSATEACHGF 359
Query: 615 N*LGVQTYREKYCRDWP*PVVGDLEKIPGFRIPKPILQNLLFDN*ARDFCSPHRHIP*TW 794
+ +G+ +Y +KYC DW D E+ P I + + L DN*AR+ C + +IP
Sbjct: 360 HNMGLSSY*KKYC*DWSLLAS*DAEEFPDI*ILQSVPPKLFLDN*ARNICCFN*YIPQAR 539
Query: 795 FQASCFGATTLVLCG 839
C +T VL G
Sbjct: 540 I*TPCPYSTAFVLSG 584
Score = 85.8 bits (181), Expect(2) = e-129
Identities = 35/47 (74%), Positives = 39/47 (82%)
Frame = +1 / +1
Query: 889 YTDNAMFVRDYTIKLLGTSFPNMTVAEVTKFVDGLLSSKLDLPSFKN 1029
Y N +FVR+YTIKLLGTSFPNMTV EVT+FVDGL S+ DL SFKN
Sbjct: 643 YPSNTVFVREYTIKLLGTSFPNMTVTEVTQFVDGLFESRNDLSSFKN 783
Score = 70.3 bits (147), Expect(3) = 7e-046
Identities = 31/74 (41%), Positives = 49/74 (66%)
Frame = -1 / -1
Query: 843 INRTKQVL*HRNMKLETRFMECVCEDCKNLLLNCQKVGFVELVLES*SLEFFQDLQQQAK 664
I++TKQ+L*+ +M ++ +EC+ + K LLNCQ++ VEL+ + LE Q L++Q K
Sbjct: 588 IHQTKQML*NMDMVFKSWLVECIS*NSKYFLLNCQEIALVELIAKFRYLEILQHLKKQVK 409
Query: 663 ASLCNISLCMSERP 622
SL NIS M++ P
Sbjct: 408 TSLSNISFSMTKGP 367
Score = 63.4 bits (132), Expect(2) = 2e-086
Identities = 30/44 (68%), Positives = 31/44 (70%)
Frame = -2 / -2
Query: 1028 FLKLGRSSFELRRPSTNLVTSATVMLGNDVPKSFMV*SRTNMAL 897
FLKL RS + PSTN VTS TVMLGNDVPKS MV SRT L
Sbjct: 782 FLKLERSFRDSNSPSTNCVTSVTVMLGNDVPKSLMVYSRTKTVL 651
Score = 55.1 bits (114), Expect(3) = 7e-040
Identities = 25/53 (47%), Positives = 34/53 (64%)
Frame = +3 / +3
Query: 258 DRDFCGQGGRFATCRKAVCTTNDGSCSW*LC*KCTRCKGV*SSVLVCNNH*QV 416
D + C R T R+A+CTT GS +W*LC +C C V*SS+++CN + QV
Sbjct: 3 D*NICR*S*RSTTYREAICTTYVGSYTW*LCAECA*C*RV*SSIIICNYNKQV 161
Score = 53.8 bits (111), Expect(3) = 7e-046
Identities = 27/44 (61%), Positives = 32/44 (72%)
Frame = -1 / -1
Query: 1029 VFEARKIKF*TKKAIHKLGHLSYSHVRK*CS*EFYGVISNKHGI 898
V E RKI * K +IHKL +LS HVRK*CS*E G++SNK+ I
Sbjct: 783 VLETRKIIP*LK*SIHKLCNLSDCHVRK*CS*ELDGILSNKNSI 652
Score = 50.6 bits (104), Expect(3) = 7e-040
Identities = 24/47 (51%), Positives = 32/47 (68%)
Frame = +2 / +2
Query: 890 IRIMPCLFEITP*NS*EHHFLT*L*LR*PSLWMAFLVQNLIFRASKT 1030
I+++ LFE P +S*EHHFLT* LR +LWM +L +IF S+T
Sbjct: 644 IQVILFLFESIPSSS*EHHFLT*QSLRLHNLWMDYLSHGMIFLVSRT 784
Score = 49.6 bits (102), Expect(4) = 7e-021
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +3 / +3
Query: 909 CSRLHHKTLRNIIS*HDCS*GDQVCGW 989
CSR++H+ LRNIIS*HD *G +CGW
Sbjct: 663 CSRVYHQALRNIIS*HDSH*GYTICGW 743
Score = 47.3 bits (97), Expect(4) = 7e-021
Identities = 30/60 (50%), Positives = 36/60 (60%)
Frame = +2 / +2
Query: 284 KICHM*ESSLYHQ*WILFLVIMLEMYPMQGSLKFCPCLQQSLTSTKGKCLRMCLVYLRLF 463
KI H+* S+LY+ WIL+LV M M M SLKF LQ TS K RM V+L+LF
Sbjct: 29 KINHI*GSNLYNLCWILYLVTMRGMCLMLESLKFYHYLQL**TSIKLL*WRMYHVFLKLF 208
Score = 45.1 bits (92), Expect(4) = 7e-021
Identities = 27/67 (40%), Positives = 36/67 (53%)
Frame = +2 / +2
Query: 635 IQREILQRLALACCWRS*KNSRLQDSKTNSTKPTF*QLSKRFLQSSQTHSINLVSSFMFR 814
I +EIL RL C R *+ SR + +STK *QLSK++L HS + + M
Sbjct: 380 ILKEILLRLVFTCFLRC*RISRYLNFAISSTKAIS*QLSKKYLLF*LIHSTSQDLNTMSI 559
Query: 815 CYNTCFV 835
Y+ CFV
Sbjct: 560 FYSICFV 580
Score = 21.7 bits (41), Expect(4) = 7e-021
Identities = 6/11 (54%), Positives = 10/11 (90%)
Frame = +1 / +1
Query: 847 LTEPLWDASSV 879
LT+PLWD +++
Sbjct: 598 LTQPLWDINAL 630
>gb|CO167537.1|CO167537 FLD1_69_C02.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_69_C02_A029 5', mRNA sequence
Length = 709
Score = 208 bits (449), Expect(2) = 1e-098
Identities = 88/109 (80%), Positives = 96/109 (88%)
Frame = +1 / +1
Query: 517 RLKFFSLLRAIGTHCFQALIQLSSQQLKLVIDSINWAFRHTERNIAETGLSLLLEILKKF 696
RLKFFSLL AI T+CF+AL LSSQQLKLV+DSI WAFRHTERNIAETGL LLLE+LK F
Sbjct: 1 RLKFFSLLHAIATYCFRALFALSSQQLKLVMDSIIWAFRHTERNIAETGLYLLLEMLKNF 180
Query: 697 QASGFQNQFYKTYFLTIEQEIFAVLTDTFHKPGFKLHVSVLQHLFCAVD 843
Q S F NQF+++YFLTIEQEIFAVLTDTFHKPGFK HV +LQHLFC VD
Sbjct: 181 QISEFCNQFHQSYFLTIEQEIFAVLTDTFHKPGFKHHVHILQHLFCLVD 327
Score = 173 bits (372), Expect(2) = 1e-098
Identities = 75/103 (72%), Positives = 81/103 (78%)
Frame = +1 / +1
Query: 889 YTDNAMFVRDYTIKLLGTSFPNMTVAEVTKFVDGLLSSKLDLPSFKNHIRDFLVQSKEFS 1068
Y N +FVR+YTIKLLGTSFPNMTV EVT+FVDGL S+ DL SFKNHIRDFLVQSKEFS
Sbjct: 382 YPSNTVFVREYTIKLLGTSFPNMTVTEVTQFVDGLFESRNDLSSFKNHIRDFLVQSKEFS 561
Query: 1069 AQDNKDLYXXXXXXXXXXXXXXMLAIPGLIAPSELQDEMVDS* 1197
AQDNKDLY ML+IPGLIAPSELQDEM+DS*
Sbjct: 562 AQDNKDLYAEEAAAQRERERQRMLSIPGLIAPSELQDEMLDS* 690
Score = 135 bits (290), Expect(3) = 6e-058
Identities = 64/106 (60%), Positives = 75/106 (70%)
Frame = -2 / -3
Query: 842 STAQNKCCSTET*SLKPGLWNVSVRTAKISCSIVKK*VL*NWFWNPEAWNFFKISNNRLR 663
ST QNKCC T L PGLWNVSV+TA ISCSIVKK*+ N N + W FF IS ++ R
Sbjct: 326 STRQNKCCRIWTWCLNPGLWNVSVKTANISCSIVKK*LWWN*LQNSDIWKFFSISRSK*R 147
Query: 662 PVSAIFLSVCLNAQLIESITSFNC*LESWINAWKQWVPIARSKEKN 525
PVSAIFLSV A ++ES+TSF+C*L++ A KQ V IA S EKN
Sbjct: 146 PVSAIFLSVWRKAHIMESMTSFSC*LDNANKARKQ*VAIAWSNEKN 9
Score = 91.8 bits (194), Expect(2) = 7e-032
Identities = 47/98 (47%), Positives = 62/98 (63%)
Frame = +2 / +2
Query: 890 IRIMPCLFEITP*NS*EHHFLT*L*LR*PSLWMAFLVQNLIFRASKTILEISWCSRRSSQ 1069
I+++ LFE P +S*EHHFLT* LR +LWM +L +IF S+T E S + +SS
Sbjct: 383 IQVILFLFESIPSSS*EHHFLT*QSLRLHNLWMDYLSHGMIFLVSRTTFETSLSNLKSSL 562
Query: 1070 LRITRIYTRKRLLPKEKGSANECLPFRG*LPLANCKTR 1183
LRIT+I +K+ L KEK +A ECL F G L N K +
Sbjct: 563 LRITKISMQKKQLRKEKENAKECLAFLGLLHPVNYKMK 676
Score = 85.4 bits (180), Expect(3) = 6e-058
Identities = 39/57 (68%), Positives = 41/57 (71%)
Frame = -2 / -3
Query: 1067 ENSFDCTRKSLIWFLKLGRSSFELRRPSTNLVTSATVMLGNDVPKSFMV*SRTNMAL 897
ENS D TRKS +WFLKL RS + PSTN VTS TVMLGNDVPKS MV SRT L
Sbjct: 560 ENSLDWTRKSRMWFLKLERSFRDSNSPSTNCVTSVTVMLGNDVPKSLMVYSRTKTVL 390
Score = 70.3 bits (147), Expect(3) = 6e-031
Identities = 31/74 (41%), Positives = 49/74 (66%)
Frame = -1 / -2
Query: 843 INRTKQVL*HRNMKLETRFMECVCEDCKNLLLNCQKVGFVELVLES*SLEFFQDLQQQAK 664
I++TKQ+L*+ +M ++ +EC+ + K LLNCQ++ VEL+ + LE Q L++Q K
Sbjct: 327 IHQTKQML*NMDMVFKSWLVECIS*NSKYFLLNCQEIALVELIAKFRYLEILQHLKKQVK 148
Query: 663 ASLCNISLCMSERP 622
SL NIS M++ P
Sbjct: 147 TSLSNISFSMAKGP 106
Score = 67.0 bits (140), Expect(2) = 7e-032
Identities = 36/106 (33%), Positives = 50/106 (47%)
Frame = +3 / +3
Query: 522 QIFFFASCNWHPLLPSINPAFKSAIEACDRFN*LGVQTYREKYCRDWP*PVVGDLEKIPG 701
+I C+ + L P KSA EAC F+ +G+ Y +KYC DW D E+ P
Sbjct: 6 EILLITPCDCYLLFPCFVCIIKSAAEACHGFHNMGLSPY*KKYC*DWSLLAS*DAEEFPD 185
Query: 702 FRIPKPILQNLLFDN*ARDFCSPHRHIP*TWFQASCFGATTLVLCG 839
I + + L DN*AR+ C + +IP C +T VL G
Sbjct: 186 I*ILQSVPPKLFLDN*ARNICCFN*YIPQARI*TPCPYSTAFVLSG 323
Score = 62.9 bits (131), Expect(3) = 6e-031
Identities = 30/50 (60%), Positives = 38/50 (76%)
Frame = -1 / -2
Query: 1047 QEISNMVFEARKIKF*TKKAIHKLGHLSYSHVRK*CS*EFYGVISNKHGI 898
+E+SN+V E RKI * K +IHKL +LS HVRK*CS*E G++SNK+ I
Sbjct: 540 KEVSNVVLETRKIIP*LK*SIHKLCNLSDCHVRK*CS*ELDGILSNKNSI 391
Score = 43.7 bits (89), Expect(3) = 6e-058
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = -2 / -3
Query: 1196 YESTISSCNSLGAISPGMASI 1134
YES ISSC+SLGAISPGM SI
Sbjct: 689 YESNISSCSSLGAISPGMLSI 627
Score = 40.5 bits (82), Expect(3) = 6e-031
Identities = 17/30 (56%), Positives = 19/30 (63%)
Frame = -1 / -2
Query: 1185 HLVLQFARGNQPRNGKHSLALPFSLGSSLF 1096
H +L F N+PRN KHSLA FSL S F
Sbjct: 678 HFIL*FTGCNKPRNAKHSLAFSFSLRSCFF 589
>gb|DR169326.1|DR169326 RTPHOS1_31_D02.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_31_D02_A029 5', mRNA sequence
Length = 661
Score = 199 bits (429), Expect(2) = 5e-092
Identities = 84/106 (79%), Positives = 92/106 (86%)
Frame = +1 / +1
Query: 526 FFSLLRAIGTHCFQALIQLSSQQLKLVIDSINWAFRHTERNIAETGLSLLLEILKKFQAS 705
FFSLL AI T+CF+AL LSSQQLKLV+DSI WAFRHTERNIAETG LLLE+LK FQ S
Sbjct: 1 FFSLLHAIATYCFRALFALSSQQLKLVMDSIIWAFRHTERNIAETGRYLLLEMLKNFQIS 180
Query: 706 GFQNQFYKTYFLTIEQEIFAVLTDTFHKPGFKLHVSVLQHLFCAVD 843
F NQF+++YFLTIEQEIFAVLTDTFHKPGFK HV +LQHLFC VD
Sbjct: 181 EFCNQFHQSYFLTIEQEIFAVLTDTFHKPGFKHHVHILQHLFCLVD 318
Score = 160 bits (344), Expect(2) = 5e-092
Identities = 69/96 (71%), Positives = 74/96 (77%)
Frame = +1 / +1
Query: 889 YTDNAMFVRDYTIKLLGTSFPNMTVAEVTKFVDGLLSSKLDLPSFKNHIRDFLVQSKEFS 1068
Y N +FVR+YTIKLLGTSFPNMTV EVT+FVDGL S+ DL SFKNHIRDFLVQSKEFS
Sbjct: 373 YPSNTVFVREYTIKLLGTSFPNMTVTEVTQFVDGLFESRNDLSSFKNHIRDFLVQSKEFS 552
Query: 1069 AQDNKDLYXXXXXXXXXXXXXXMLAIPGLIAPSELQ 1176
AQDNKDLY ML+IPGLIAPSELQ
Sbjct: 553 AQDNKDLYAEEAAAQRERERQRMLSIPGLIAPSELQ 660
Score = 132 bits (282), Expect(3) = 2e-054
Identities = 63/105 (60%), Positives = 74/105 (70%)
Frame = -2 / -3
Query: 842 STAQNKCCSTET*SLKPGLWNVSVRTAKISCSIVKK*VL*NWFWNPEAWNFFKISNNRLR 663
ST QNKCC T L PGLWNVSV+TA ISCSIVKK*+ N N + W FF IS ++ R
Sbjct: 317 STRQNKCCRIWTWCLNPGLWNVSVKTANISCSIVKK*LWWN*LQNSDIWKFFSISRSK*R 138
Query: 662 PVSAIFLSVCLNAQLIESITSFNC*LESWINAWKQWVPIARSKEK 528
PVSAIFLSV A ++ES+TSF+C*L++ A KQ V IA S EK
Sbjct: 137 PVSAIFLSV*RKAHIMESMTSFSC*LDNANKARKQ*VAIAWSNEK 3
Score = 94.1 bits (199), Expect(2) = 4e-032
Identities = 48/96 (50%), Positives = 62/96 (64%)
Frame = +2 / +2
Query: 890 IRIMPCLFEITP*NS*EHHFLT*L*LR*PSLWMAFLVQNLIFRASKTILEISWCSRRSSQ 1069
I+++ LFE P +S*EHHFLT* LR +LWM +L +IF S+T E S + +SS
Sbjct: 374 IQVILFLFESIPSSS*EHHFLT*QSLRLHNLWMDYLSHGMIFLVSRTTFETSLSNLKSSL 553
Query: 1070 LRITRIYTRKRLLPKEKGSANECLPFRG*LPLANCK 1177
LRIT+I T+K+ L KEK +A ECL F G L N K
Sbjct: 554 LRITKISTQKKQLRKEKENAKECLAFLGLLHPVNYK 661
Score = 85.4 bits (180), Expect(3) = 2e-054
Identities = 39/57 (68%), Positives = 41/57 (71%)
Frame = -2 / -3
Query: 1067 ENSFDCTRKSLIWFLKLGRSSFELRRPSTNLVTSATVMLGNDVPKSFMV*SRTNMAL 897
ENS D TRKS +WFLKL RS + PSTN VTS TVMLGNDVPKS MV SRT L
Sbjct: 551 ENSLDWTRKSRMWFLKLERSFRDSNSPSTNCVTSVTVMLGNDVPKSLMVYSRTKTVL 381
Score = 73.5 bits (154), Expect(2) = 1e-026
Identities = 43/88 (48%), Positives = 48/88 (54%)
Frame = -3 / -1
Query: 1159 QSAPEWQAFVGAPFLFGQQPLPRIDPCYPELRTPSTAPGNL*YGF*SSEDQVLN*EGHPQ 980
Q A E AF G FLF Q L R D CYPE RT G+L G *+ +D + HPQ
Sbjct: 643 Q*AQEC*AFFGVLFLFAQLLLLRRDLCYPEQRTL*IGQGSLECGS*N*KDHSVTQIVHPQ 464
Query: 979 TWSPQLQSC*EMMFLRVLWCNLEQTWHY 896
PQ SC*EMMFLR W LEQ +Y
Sbjct: 463 IV*PQ*LSC*EMMFLRA*WYTLEQKQYY 380
Score = 67.5 bits (141), Expect(2) = 1e-026
Identities = 30/74 (40%), Positives = 48/74 (64%)
Frame = -1 / -2
Query: 843 INRTKQVL*HRNMKLETRFMECVCEDCKNLLLNCQKVGFVELVLES*SLEFFQDLQQQAK 664
I++TKQ+L*+ +M ++ +EC+ + K LLNCQ++ VEL+ + LE Q L++Q
Sbjct: 318 IHQTKQML*NMDMVFKSWLVECIS*NSKYFLLNCQEIALVELIAKFRYLEILQHLKKQVT 139
Query: 663 ASLCNISLCMSERP 622
SL NIS M++ P
Sbjct: 138 TSLSNISFSMTKGP 97
Score = 65.7 bits (137), Expect(2) = 4e-032
Identities = 35/99 (35%), Positives = 49/99 (49%)
Frame = +3 / +3
Query: 543 CNWHPLLPSINPAFKSAIEACDRFN*LGVQTYREKYCRDWP*PVVGDLEKIPGFRIPKPI 722
C+ + L P KSA EAC F+ +G+ +Y +KYC DW D E+ P I + +
Sbjct: 18 CDCYLLFPCFVCIIKSATEACHGFHNMGLSSY*KKYC*DWSLLAS*DAEEFPDI*ILQSV 197
Query: 723 LQNLLFDN*ARDFCSPHRHIP*TWFQASCFGATTLVLCG 839
L DN*AR+ C + +IP C +T VL G
Sbjct: 198 PPKLFLDN*ARNICCFN*YIPQARI*TPCPYSTAFVLSG 314
Score = 35.4 bits (71), Expect(3) = 2e-054
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -1 / -2
Query: 1170 FARGNQPRNGKHSLALPFSLGSSLF 1096
F N+PRN KHSLA FSL S F
Sbjct: 654 FTGCNKPRNAKHSLAFSFSLRSCFF 580
>gb|DR078083.1|DR078083 RTFEPL1_1_G05.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_1_G05_A029 5', mRNA sequence
Length = 791
Score = 173 bits (372), Expect(2) = 3e-084
Identities = 75/103 (72%), Positives = 81/103 (78%)
Frame = +1 / +1
Query: 889 YTDNAMFVRDYTIKLLGTSFPNMTVAEVTKFVDGLLSSKLDLPSFKNHIRDFLVQSKEFS 1068
Y N +FVR+YTIKLLGTSFPNMTV EVT+FVDGL S+ DL SFKNHIRDFLVQSKEFS
Sbjct: 307 YPSNTVFVREYTIKLLGTSFPNMTVTEVTQFVDGLFESRNDLSSFKNHIRDFLVQSKEFS 486
Query: 1069 AQDNKDLYXXXXXXXXXXXXXXMLAIPGLIAPSELQDEMVDS* 1197
AQDNKDLY ML+IPGLIAPSELQDEM+DS*
Sbjct: 487 AQDNKDLYAEEAAAQRERERQRMLSIPGLIAPSELQDEMLDS* 615
Score = 160 bits (344), Expect(2) = 3e-084
Identities = 66/84 (78%), Positives = 74/84 (88%)
Frame = +1 / +1
Query: 592 QLKLVIDSINWAFRHTERNIAETGLSLLLEILKKFQASGFQNQFYKTYFLTIEQEIFAVL 771
+ +LV+DSI WAFRHTERNIAETGL LLLE+LK FQ S F NQF+++YFLTIEQEIFAVL
Sbjct: 1 EAELVMDSIIWAFRHTERNIAETGLYLLLEMLKNFQISEFCNQFHQSYFLTIEQEIFAVL 180
Query: 772 TDTFHKPGFKLHVSVLQHLFCAVD 843
TDTFHKPGFK HV +LQHLFC VD
Sbjct: 181 TDTFHKPGFKHHVHILQHLFCLVD 252
Score = 111 bits (237), Expect(3) = 9e-051
Identities = 50/81 (61%), Positives = 58/81 (71%)
Frame = -2 / -1
Query: 842 STAQNKCCSTET*SLKPGLWNVSVRTAKISCSIVKK*VL*NWFWNPEAWNFFKISNNRLR 663
ST QNKCC T L PGLWNVSV+TA ISCSIVKK*+ N N + W FF IS ++ R
Sbjct: 251 STRQNKCCRIWTWCLNPGLWNVSVKTANISCSIVKK*LWWN*LQNSDIWKFFSISRSK*R 72
Query: 662 PVSAIFLSVCLNAQLIESITS 600
PVSAIFLSV A ++ES+TS
Sbjct: 71 PVSAIFLSVWRKAHIMESMTS 9
Score = 93.6 bits (198), Expect(2) = 5e-028
Identities = 49/112 (43%), Positives = 69/112 (61%)
Frame = +2 / +2
Query: 890 IRIMPCLFEITP*NS*EHHFLT*L*LR*PSLWMAFLVQNLIFRASKTILEISWCSRRSSQ 1069
I+++ LFE P +S*EHHFLT* LR +LWM +L +IF S+T E S + +SS
Sbjct: 308 IQVILFLFESIPSSS*EHHFLT*QSLRLHNLWMDYLSHGMIFLVSRTTFETSLSNLKSSL 487
Query: 1070 LRITRIYTRKRLLPKEKGSANECLPFRG*LPLANCKTRW*IRSVPCFDSAFS 1225
LRIT+I +K+ L KEK +A ECL F G L N K + * ++ ++ F+
Sbjct: 488 LRITKISMQKKQLRKEKENAKECLAFLGLLHPVNYKMKC*THNLVSWEYIFT 643
Score = 85.4 bits (180), Expect(3) = 9e-051
Identities = 39/57 (68%), Positives = 41/57 (71%)
Frame = -2 / -1
Query: 1067 ENSFDCTRKSLIWFLKLGRSSFELRRPSTNLVTSATVMLGNDVPKSFMV*SRTNMAL 897
ENS D TRKS +WFLKL RS + PSTN VTS TVMLGNDVPKS MV SRT L
Sbjct: 485 ENSLDWTRKSRMWFLKLERSFRDSNSPSTNCVTSVTVMLGNDVPKSLMVYSRTKTVL 315
Score = 70.3 bits (147), Expect(3) = 6e-031
Identities = 31/74 (41%), Positives = 49/74 (66%)
Frame = -1 / -3
Query: 843 INRTKQVL*HRNMKLETRFMECVCEDCKNLLLNCQKVGFVELVLES*SLEFFQDLQQQAK 664
I++TKQ+L*+ +M ++ +EC+ + K LLNCQ++ VEL+ + LE Q L++Q K
Sbjct: 252 IHQTKQML*NMDMVFKSWLVECIS*NSKYFLLNCQEIALVELIAKFRYLEILQHLKKQVK 73
Query: 663 ASLCNISLCMSERP 622
SL NIS M++ P
Sbjct: 72 TSLSNISFSMAKGP 31
Score = 62.9 bits (131), Expect(3) = 6e-031
Identities = 30/50 (60%), Positives = 38/50 (76%)
Frame = -1 / -3
Query: 1047 QEISNMVFEARKIKF*TKKAIHKLGHLSYSHVRK*CS*EFYGVISNKHGI 898
+E+SN+V E RKI * K +IHKL +LS HVRK*CS*E G++SNK+ I
Sbjct: 465 KEVSNVVLETRKIIP*LK*SIHKLCNLSDCHVRK*CS*ELDGILSNKNSI 316
Score = 52.4 bits (108), Expect(2) = 5e-028
Identities = 28/80 (35%), Positives = 39/80 (48%)
Frame = +3 / +3
Query: 600 ACDRFN*LGVQTYREKYCRDWP*PVVGDLEKIPGFRIPKPILQNLLFDN*ARDFCSPHRH 779
AC F+ +G+ Y +KYC DW D E+ P I + + L DN*AR+ C + +
Sbjct: 9 ACHGFHNMGLSPY*KKYC*DWSLLAS*DAEEFPDI*ILQSVPPKLFLDN*ARNICCFN*Y 188
Query: 780 IP*TWFQASCFGATTLVLCG 839
IP C +T VL G
Sbjct: 189 IPQARI*TPCPYSTAFVLSG 248
Score = 43.7 bits (89), Expect(3) = 9e-051
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = -2 / -1
Query: 1196 YESTISSCNSLGAISPGMASI 1134
YES ISSC+SLGAISPGM SI
Sbjct: 614 YESNISSCSSLGAISPGMLSI 552
Score = 40.5 bits (82), Expect(3) = 6e-031
Identities = 17/30 (56%), Positives = 19/30 (63%)
Frame = -1 / -3
Query: 1185 HLVLQFARGNQPRNGKHSLALPFSLGSSLF 1096
H +L F N+PRN KHSLA FSL S F
Sbjct: 603 HFIL*FTGCNKPRNAKHSLAFSFSLRSCFF 514
>gb|CO368479.1|CO368479 RTK1_40_H02.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_40_H02_A029 5', mRNA sequence
Length = 783
Score = 173 bits (372), Expect(2) = 1e-082
Identities = 75/103 (72%), Positives = 81/103 (78%)
Frame = +1 / +2
Query: 889 YTDNAMFVRDYTIKLLGTSFPNMTVAEVTKFVDGLLSSKLDLPSFKNHIRDFLVQSKEFS 1068
Y N +FVR+YTIKLLGTSFPNMTV EVT+FVDGL S+ DL SFKNHIRDFLVQSKEFS
Sbjct: 290 YPSNTVFVREYTIKLLGTSFPNMTVTEVTQFVDGLFESRNDLSSFKNHIRDFLVQSKEFS 469
Query: 1069 AQDNKDLYXXXXXXXXXXXXXXMLAIPGLIAPSELQDEMVDS* 1197
AQDNKDLY ML+IPGLIAPSELQDEM+DS*
Sbjct: 470 AQDNKDLYAEEAAAQRERERQRMLSIPGLIAPSELQDEMLDS* 598
Score = 155 bits (333), Expect(2) = 1e-082
Identities = 64/78 (82%), Positives = 69/78 (88%)
Frame = +1 / +2
Query: 610 DSINWAFRHTERNIAETGLSLLLEILKKFQASGFQNQFYKTYFLTIEQEIFAVLTDTFHK 789
DSI WAFRHTERNIAETGL LLLE+LK FQ S F NQF+++YFLTIEQEIFAVLTDTFHK
Sbjct: 2 DSIIWAFRHTERNIAETGLYLLLEMLKNFQISEFCNQFHQSYFLTIEQEIFAVLTDTFHK 181
Query: 790 PGFKLHVSVLQHLFCAVD 843
PGFK HV +LQHLFC VD
Sbjct: 182 PGFKHHVHILQHLFCLVD 235
Score = 106 bits (227), Expect(3) = 2e-049
Identities = 48/78 (61%), Positives = 55/78 (70%)
Frame = -2 / -1
Query: 842 STAQNKCCSTET*SLKPGLWNVSVRTAKISCSIVKK*VL*NWFWNPEAWNFFKISNNRLR 663
ST QNKCC T L PGLWNVSV+TA ISCSIVKK*+ N N + W FF IS ++ R
Sbjct: 234 STRQNKCCRIWTWCLNPGLWNVSVKTANISCSIVKK*LWWN*LQNSDIWKFFSISRSK*R 55
Query: 662 PVSAIFLSVCLNAQLIES 609
PVSAIFLSV A ++ES
Sbjct: 54 PVSAIFLSVWRKAHIMES 1
Score = 93.6 bits (198), Expect(2) = 1e-026
Identities = 49/112 (43%), Positives = 69/112 (61%)
Frame = +2 / +3
Query: 890 IRIMPCLFEITP*NS*EHHFLT*L*LR*PSLWMAFLVQNLIFRASKTILEISWCSRRSSQ 1069
I+++ LFE P +S*EHHFLT* LR +LWM +L +IF S+T E S + +SS
Sbjct: 291 IQVILFLFESIPSSS*EHHFLT*QSLRLHNLWMDYLSHGMIFLVSRTTFETSLSNLKSSL 470
Query: 1070 LRITRIYTRKRLLPKEKGSANECLPFRG*LPLANCKTRW*IRSVPCFDSAFS 1225
LRIT+I +K+ L KEK +A ECL F G L N K + * ++ ++ F+
Sbjct: 471 LRITKISMQKKQLRKEKENAKECLAFLGLLHPVNYKMKC*THNLVSWEYIFT 626
Score = 85.4 bits (180), Expect(3) = 2e-049
Identities = 39/57 (68%), Positives = 41/57 (71%)
Frame = -2 / -1
Query: 1067 ENSFDCTRKSLIWFLKLGRSSFELRRPSTNLVTSATVMLGNDVPKSFMV*SRTNMAL 897
ENS D TRKS +WFLKL RS + PSTN VTS TVMLGNDVPKS MV SRT L
Sbjct: 468 ENSLDWTRKSRMWFLKLERSFRDSNSPSTNCVTSVTVMLGNDVPKSLMVYSRTKTVL 298
Score = 70.3 bits (147), Expect(3) = 6e-031
Identities = 31/74 (41%), Positives = 49/74 (66%)
Frame = -1 / -3
Query: 843 INRTKQVL*HRNMKLETRFMECVCEDCKNLLLNCQKVGFVELVLES*SLEFFQDLQQQAK 664
I++TKQ+L*+ +M ++ +EC+ + K LLNCQ++ VEL+ + LE Q L++Q K
Sbjct: 235 IHQTKQML*NMDMVFKSWLVECIS*NSKYFLLNCQEIALVELIAKFRYLEILQHLKKQVK 56
Query: 663 ASLCNISLCMSERP 622
SL NIS M++ P
Sbjct: 55 TSLSNISFSMAKGP 14
Score = 62.9 bits (131), Expect(3) = 6e-031
Identities = 30/50 (60%), Positives = 38/50 (76%)
Frame = -1 / -3
Query: 1047 QEISNMVFEARKIKF*TKKAIHKLGHLSYSHVRK*CS*EFYGVISNKHGI 898
+E+SN+V E RKI * K +IHKL +LS HVRK*CS*E G++SNK+ I
Sbjct: 448 KEVSNVVLETRKIIP*LK*SIHKLCNLSDCHVRK*CS*ELDGILSNKNSI 299
Score = 47.8 bits (98), Expect(2) = 1e-026
Identities = 26/76 (34%), Positives = 37/76 (48%)
Frame = +3 / +1
Query: 612 FN*LGVQTYREKYCRDWP*PVVGDLEKIPGFRIPKPILQNLLFDN*ARDFCSPHRHIP*T 791
F+ +G+ Y +KYC DW D E+ P I + + L DN*AR+ C + +IP
Sbjct: 4 FHNMGLSPY*KKYC*DWSLLAS*DAEEFPDI*ILQSVPPKLFLDN*ARNICCFN*YIPQA 183
Query: 792 WFQASCFGATTLVLCG 839
C +T VL G
Sbjct: 184 RI*TPCPYSTAFVLSG 231
Score = 43.7 bits (89), Expect(3) = 2e-049
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = -2 / -1
Query: 1196 YESTISSCNSLGAISPGMASI 1134
YES ISSC+SLGAISPGM SI
Sbjct: 597 YESNISSCSSLGAISPGMLSI 535
Score = 40.5 bits (82), Expect(3) = 6e-031
Identities = 17/30 (56%), Positives = 19/30 (63%)
Frame = -1 / -3
Query: 1185 HLVLQFARGNQPRNGKHSLALPFSLGSSLF 1096
H +L F N+PRN KHSLA FSL S F
Sbjct: 586 HFIL*FTGCNKPRNAKHSLAFSFSLRSCFF 497
>gb|BX249137.1|BX249137 BX249137 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP020D09, mRNA sequence
Length = 715
Score = 171 bits (369), Expect(2) = 3e-067
Identities = 74/103 (71%), Positives = 81/103 (78%)
Frame = +1 / +2
Query: 889 YTDNAMFVRDYTIKLLGTSFPNMTVAEVTKFVDGLLSSKLDLPSFKNHIRDFLVQSKEFS 1068
Y N +FVR+YTIKLLGTSFPNMTV EVT+FVDGL S+ DL SFKNHIRDFLVQSKEFS
Sbjct: 218 YPSNTVFVREYTIKLLGTSFPNMTVTEVTQFVDGLFESRNDLSSFKNHIRDFLVQSKEFS 397
Query: 1069 AQDNKDLYXXXXXXXXXXXXXXMLAIPGLIAPSELQDEMVDS* 1197
AQDNKDLY ML+IPGLIAPSELQDEM+D+*
Sbjct: 398 AQDNKDLYAEEAAAQRERERQRMLSIPGLIAPSELQDEMLDT* 526
Score = 105 bits (224), Expect(2) = 3e-067
Identities = 42/54 (77%), Positives = 47/54 (87%)
Frame = +1 / +2
Query: 682 ILKKFQASGFQNQFYKTYFLTIEQEIFAVLTDTFHKPGFKLHVSVLQHLFCAVD 843
+LK FQ S F NQF+++YFLTIEQEIFAVLTDTFHKPGFK HV +LQHLFC VD
Sbjct: 2 MLKNFQISEFCNQFHQSYFLTIEQEIFAVLTDTFHKPGFKHHVHILQHLFCLVD 163
Score = 92.7 bits (196), Expect(2) = 1e-021
Identities = 47/98 (47%), Positives = 62/98 (63%)
Frame = +2 / +3
Query: 890 IRIMPCLFEITP*NS*EHHFLT*L*LR*PSLWMAFLVQNLIFRASKTILEISWCSRRSSQ 1069
I+++ LFE P +S*EHHFLT* LR +LWM +L +IF S+T E S + +SS
Sbjct: 219 IQVIQFLFESIPSSS*EHHFLT*QSLRLHNLWMDYLSHGMIFPVSRTTFETSLSNLKSSL 398
Query: 1070 LRITRIYTRKRLLPKEKGSANECLPFRG*LPLANCKTR 1183
LRIT+I +K+ L KEK +A ECL F G L N K +
Sbjct: 399 LRITKISMQKKQLRKEKENAKECLAFLGLLHPVNYKMK 512
Score = 84.0 bits (177), Expect(3) = 9e-040
Identities = 38/57 (66%), Positives = 41/57 (71%)
Frame = -2 / -2
Query: 1067 ENSFDCTRKSLIWFLKLGRSSFELRRPSTNLVTSATVMLGNDVPKSFMV*SRTNMAL 897
ENS D TRKS +WFLKL RS + PSTN VTS TVMLGNDVP+S MV SRT L
Sbjct: 396 ENSLDWTRKSRMWFLKLERSFRDSNSPSTNCVTSVTVMLGNDVPRSLMVYSRTKTVL 226
Score = 79.0 bits (166), Expect(3) = 9e-040
Identities = 34/54 (62%), Positives = 37/54 (68%)
Frame = -2 / -2
Query: 842 STAQNKCCSTET*SLKPGLWNVSVRTAKISCSIVKK*VL*NWFWNPEAWNFFKI 681
ST QNKCC T L PGLWNVSV+TA ISCSIVKK*+ N N + W FF I
Sbjct: 162 STRQNKCCRIWTWCLNPGLWNVSVKTANISCSIVKK*LWWN*LQNSDIWKFFSI 1
Score = 58.3 bits (121), Expect(3) = 3e-023
Identities = 29/50 (58%), Positives = 37/50 (74%)
Frame = -1 / -1
Query: 1047 QEISNMVFEARKIKF*TKKAIHKLGHLSYSHVRK*CS*EFYGVISNKHGI 898
+E+SN+V E KI * K +IHKL +LS HVRK*CS*E G++SNK+ I
Sbjct: 376 KEVSNVVLETGKIIP*LK*SIHKLCNLSDCHVRK*CS*ELDGILSNKNCI 227
Score = 48.7 bits (100), Expect(3) = 3e-023
Identities = 21/53 (39%), Positives = 35/53 (66%)
Frame = -1 / -1
Query: 843 INRTKQVL*HRNMKLETRFMECVCEDCKNLLLNCQKVGFVELVLES*SLEFFQ 685
I++TKQ+L*+ +M ++ +EC+ + K LLNCQ++ VEL+ + LE Q
Sbjct: 163 IHQTKQML*NMDMVFKSWLVECIS*NSKYFLLNCQEIALVELIAKFRYLEILQ 5
Score = 40.5 bits (82), Expect(3) = 3e-023
Identities = 17/30 (56%), Positives = 19/30 (63%)
Frame = -1 / -1
Query: 1185 HLVLQFARGNQPRNGKHSLALPFSLGSSLF 1096
H +L F N+PRN KHSLA FSL S F
Sbjct: 514 HFIL*FTGCNKPRNAKHSLAFSFSLRSCFF 425
Score = 40.5 bits (82), Expect(3) = 9e-040
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = -2 / -2
Query: 1196 YESTISSCNSLGAISPGMASI 1134
Y S ISSC+SLGAISPGM SI
Sbjct: 525 YVSNISSCSSLGAISPGMLSI 463
Score = 31.8 bits (63), Expect(2) = 1e-021
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +3 / +1
Query: 681 DLEKIPGFRIPKPILQNLLFDN*ARDFCSPHRHIP*TWFQASCFGATTLVLCG 839
D E+ P I + + L DN*AR+ C + +IP C +T VL G
Sbjct: 1 DAEEFPDI*ILQSVPPKLFLDN*ARNICCFN*YIPQARI*TPCPYSTAFVLSG 159
>gb|DR692511.1|DR692511 EST1082599 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADN03 3' end, mRNA sequence
Length = 838
Score = 173 bits (372), Expect(2) = 6e-062
Identities = 75/103 (72%), Positives = 81/103 (78%)
Frame = +1 / +2
Query: 889 YTDNAMFVRDYTIKLLGTSFPNMTVAEVTKFVDGLLSSKLDLPSFKNHIRDFLVQSKEFS 1068
Y N +FVR+YTIKLLGTSFPNMTV EVT+FVDGL S+ DL SFKNHIRDFLVQSKEFS
Sbjct: 176 YPSNTVFVREYTIKLLGTSFPNMTVTEVTQFVDGLFESRNDLSSFKNHIRDFLVQSKEFS 355
Query: 1069 AQDNKDLYXXXXXXXXXXXXXXMLAIPGLIAPSELQDEMVDS* 1197
AQDNKDLY ML+IPGLIAPSELQDEM+DS*
Sbjct: 356 AQDNKDLYAEEAAAQRERERQRMLSIPGLIAPSELQDEMLDS* 484
Score = 86.3 bits (182), Expect(2) = 6e-062
Identities = 33/40 (82%), Positives = 37/40 (92%)
Frame = +1 / +2
Query: 724 YKTYFLTIEQEIFAVLTDTFHKPGFKLHVSVLQHLFCAVD 843
+++YFLTIEQEIFAVLTDTFHKPGFK HV +LQHLFC VD
Sbjct: 2 HQSYFLTIEQEIFAVLTDTFHKPGFKHHVHILQHLFCLVD 121
Score = 85.4 bits (180), Expect(3) = 2e-037
Identities = 39/57 (68%), Positives = 41/57 (71%)
Frame = -2 / -2
Query: 1067 ENSFDCTRKSLIWFLKLGRSSFELRRPSTNLVTSATVMLGNDVPKSFMV*SRTNMAL 897
ENS D TRKS +WFLKL RS + PSTN VTS TVMLGNDVPKS MV SRT L
Sbjct: 354 ENSLDWTRKSRMWFLKLERSFRDSNSPSTNCVTSVTVMLGNDVPKSLMVYSRTKTVL 184
Score = 66.6 bits (139), Expect(3) = 2e-037
Identities = 28/38 (73%), Positives = 30/38 (78%)
Frame = -2 / -2
Query: 842 STAQNKCCSTET*SLKPGLWNVSVRTAKISCSIVKK*V 729
ST QNKCC T L PGLWNVSV+TA ISCSIVKK*+
Sbjct: 120 STRQNKCCRIWTWCLNPGLWNVSVKTANISCSIVKK*L 7
Score = 62.9 bits (131), Expect(3) = 3e-022
Identities = 30/50 (60%), Positives = 38/50 (76%)
Frame = -1 / -1
Query: 1047 QEISNMVFEARKIKF*TKKAIHKLGHLSYSHVRK*CS*EFYGVISNKHGI 898
+E+SN+V E RKI * K +IHKL +LS HVRK*CS*E G++SNK+ I
Sbjct: 334 KEVSNVVLETRKIIP*LK*SIHKLCNLSDCHVRK*CS*ELDGILSNKNSI 185
Score = 43.7 bits (89), Expect(3) = 2e-037
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = -2 / -2
Query: 1196 YESTISSCNSLGAISPGMASI 1134
YES ISSC+SLGAISPGM SI
Sbjct: 483 YESNISSCSSLGAISPGMLSI 421
Score = 40.5 bits (82), Expect(3) = 3e-022
Identities = 16/40 (40%), Positives = 28/40 (70%)
Frame = -1 / -1
Query: 843 INRTKQVL*HRNMKLETRFMECVCEDCKNLLLNCQKVGFV 724
I++TKQ+L*+ +M ++ +EC+ + K LLNCQ++ V
Sbjct: 121 IHQTKQML*NMDMVFKSWLVECIS*NSKYFLLNCQEIALV 2
Score = 40.5 bits (82), Expect(3) = 3e-022
Identities = 17/30 (56%), Positives = 19/30 (63%)
Frame = -1 / -1
Query: 1185 HLVLQFARGNQPRNGKHSLALPFSLGSSLF 1096
H +L F N+PRN KHSLA FSL S F
Sbjct: 472 HFIL*FTGCNKPRNAKHSLAFSFSLRSCFF 383
>gb|DT637158.1|DT637158 EST1152089 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMH036 3' end, mRNA sequence
Length = 828
Score = 173 bits (372), Expect(2) = 6e-062
Identities = 75/103 (72%), Positives = 81/103 (78%)
Frame = +1 / +1
Query: 889 YTDNAMFVRDYTIKLLGTSFPNMTVAEVTKFVDGLLSSKLDLPSFKNHIRDFLVQSKEFS 1068
Y N +FVR+YTIKLLGTSFPNMTV EVT+FVDGL S+ DL SFKNHIRDFLVQSKEFS
Sbjct: 184 YPSNTVFVREYTIKLLGTSFPNMTVTEVTQFVDGLFESRNDLSSFKNHIRDFLVQSKEFS 363
Query: 1069 AQDNKDLYXXXXXXXXXXXXXXMLAIPGLIAPSELQDEMVDS* 1197
AQDNKDLY ML+IPGLIAPSELQDEM+DS*
Sbjct: 364 AQDNKDLYAEEAAAQRERERQRMLSIPGLIAPSELQDEMLDS* 492
Score = 86.3 bits (182), Expect(2) = 6e-062
Identities = 33/40 (82%), Positives = 37/40 (92%)
Frame = +1 / +1
Query: 724 YKTYFLTIEQEIFAVLTDTFHKPGFKLHVSVLQHLFCAVD 843
+++YFLTIEQEIFAVLTDTFHKPGFK HV +LQHLFC VD
Sbjct: 10 HQSYFLTIEQEIFAVLTDTFHKPGFKHHVHILQHLFCLVD 129
Score = 85.4 bits (180), Expect(3) = 2e-037
Identities = 39/57 (68%), Positives = 41/57 (71%)
Frame = -2 / -2
Query: 1067 ENSFDCTRKSLIWFLKLGRSSFELRRPSTNLVTSATVMLGNDVPKSFMV*SRTNMAL 897
ENS D TRKS +WFLKL RS + PSTN VTS TVMLGNDVPKS MV SRT L
Sbjct: 362 ENSLDWTRKSRMWFLKLERSFRDSNSPSTNCVTSVTVMLGNDVPKSLMVYSRTKTVL 192
Score = 66.6 bits (139), Expect(3) = 2e-037
Identities = 28/38 (73%), Positives = 30/38 (78%)
Frame = -2 / -2
Query: 842 STAQNKCCSTET*SLKPGLWNVSVRTAKISCSIVKK*V 729
ST QNKCC T L PGLWNVSV+TA ISCSIVKK*+
Sbjct: 128 STRQNKCCRIWTWCLNPGLWNVSVKTANISCSIVKK*L 15
Score = 62.9 bits (131), Expect(3) = 3e-022
Identities = 30/50 (60%), Positives = 38/50 (76%)
Frame = -1 / -1
Query: 1047 QEISNMVFEARKIKF*TKKAIHKLGHLSYSHVRK*CS*EFYGVISNKHGI 898
+E+SN+V E RKI * K +IHKL +LS HVRK*CS*E G++SNK+ I
Sbjct: 342 KEVSNVVLETRKIIP*LK*SIHKLCNLSDCHVRK*CS*ELDGILSNKNSI 193
Score = 43.7 bits (89), Expect(3) = 2e-037
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = -2 / -2
Query: 1196 YESTISSCNSLGAISPGMASI 1134
YES ISSC+SLGAISPGM SI
Sbjct: 491 YESNISSCSSLGAISPGMLSI 429
Score = 40.5 bits (82), Expect(3) = 3e-022
Identities = 16/40 (40%), Positives = 28/40 (70%)
Frame = -1 / -1
Query: 843 INRTKQVL*HRNMKLETRFMECVCEDCKNLLLNCQKVGFV 724
I++TKQ+L*+ +M ++ +EC+ + K LLNCQ++ V
Sbjct: 129 IHQTKQML*NMDMVFKSWLVECIS*NSKYFLLNCQEIALV 10
Score = 40.5 bits (82), Expect(3) = 3e-022
Identities = 17/30 (56%), Positives = 19/30 (63%)
Frame = -1 / -1
Query: 1185 HLVLQFARGNQPRNGKHSLALPFSLGSSLF 1096
H +L F N+PRN KHSLA FSL S F
Sbjct: 480 HFIL*FTGCNKPRNAKHSLAFSFSLRSCFF 391
>gb|CD017385.1|CD017385 NXCI_111_A02_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_111_A02 5' similar to Arabidopsis
thaliana sequence At5g17020 Exportin1 (XPO1) protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 197
Score = 118 bits (252), Expect = 1e-025
Identities = 49/64 (76%), Positives = 54/64 (84%)
Frame = +1 / +3
Query: 643 RNIAETGLSLLLEILKKFQASGFQNQFYKTYFLTIEQEIFAVLTDTFHKPGFKLHVSVLQ 822
RNIAETGL LLLE+LK FQ S F NQF+++YFLTIEQEIFAVLT TFHKPGFK H + Q
Sbjct: 6 RNIAETGLYLLLEMLKNFQISEFCNQFHQSYFLTIEQEIFAVLTXTFHKPGFKHHXHIXQ 185
Query: 823 HLFC 834
HLFC
Sbjct: 186 HLFC 197
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 879,797,265
Number of Sequences: 355925
Number of extensions: 13392028
Number of successful extensions: 56236
Number of sequences better than 1.0e-020: 10
length of database: 72,425,745
effective HSP length: 54
effective length of database: 53,205,795
effective search space used: 25432370010
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)