TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF12e06.yg.2.1
(561 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR686620.1|DR686620 EST1076698 Normalized pine embryo li... 91 9e-040
gb|CO364079.1|CO364079 RTK1_13_C05.g1_A029 Roots minus pota... 83 1e-034
gb|DR689244.1|DR689244 EST1079330 Normalized pine embryo li... 82 8e-034
gb|DR109571.1|DR109571 RTS1_3_E05.b1_A029 Roots minus sulfu... 82 8e-034
gb|DT635347.1|DT635347 EST1150278 Normalized pine embryo li... 82 8e-034
gb|DR112556.1|DR112556 RTS1_29_B07.b1_A029 Roots minus sulf... 78 2e-033
gb|AI812705.1|AI812705 18B3 Pine Lambda Zap Xylem library P... 110 9e-031
gb|DT633664.1|DT633664 EST1148595 Normalized pine embryo li... 77 4e-027
gb|AW289781.1|AW289781 NXNV006B06F Nsf Xylem Normal wood Ve... 91 3e-025
gb|CD028366.1|CD028366 NXNV006B06 Nsf Xylem Normal wood Ver... 91 3e-025
gb|CX651405.1|CX651405 COLD1_52_D12.b1_A029 Root cold Pinus... 110 4e-024
gb|BG319249.1|BG319249 NXPV_019_E12_F NXPV (Nsf Xylem Plani... 109 2e-023
gb|CF396558.1|CF396558 RTDS2_22_C09.g1_A021 Drought-stresse... 91 2e-022
gb|DR014696.1|DR014696 HEAT1_51_C03.b1_A029 Root at 37 C fo... 82 4e-022
gb|DR744023.1|DR744023 RTCU1_19_F03.g1_A029 Roots plus adde... 103 9e-022
>gb|DR686620.1|DR686620 EST1076698 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABI03 3' end, mRNA sequence
Length = 866
Score = 90.9 bits (192), Expect(3) = 9e-040
Identities = 32/70 (45%), Positives = 47/70 (67%)
Frame = +3 / +2
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
+L LP GL+ F L +PL+ SW GLG++ + ++I+ AA +HYNG MKPWL+L +
Sbjct: 653 KLGTLPPGLITFYGLTHPLDKSWHVLGLGYNPSVDRLEIDNAAVVHYNGNMKPWLELAMT 832
Query: 519 DYKNYWRKYL 548
Y+ YW KY+
Sbjct: 833 KYRPYWTKYI 862
Score = 76.7 bits (161), Expect(3) = 9e-040
Identities = 28/64 (43%), Positives = 44/64 (68%)
Frame = +3 / +2
Query: 3 ISIFGLSHFLLPDLLPSLNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFCGVRLGQL 182
+S+ F LP + P L++++ LDDD++VQKDL+PLW++D+ GKV GAV+ CG +
Sbjct: 305 LSMLNHLRFYLPQVYPKLDKILFLDDDIVVQKDLTPLWSVDLHGKVNGAVETCGESFHRF 484
Query: 183 KPYI 194
Y+
Sbjct: 485 DKYL 496
Score = 34.1 bits (68), Expect(3) = 9e-040
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3 / +2
Query: 210 DDDSCVWLSGLNVIELDKWRDTGITSLH 293
D ++C W G+NV +L +W+ IT ++
Sbjct: 530 DPNACGWAYGMNVFDLKEWKKQDITGIY 613
>gb|CO364079.1|CO364079 RTK1_13_C05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_13_C05_A029 5', mRNA sequence
Length = 912
Score = 83.1 bits (175), Expect(3) = 1e-034
Identities = 34/70 (48%), Positives = 42/70 (60%)
Frame = +3 / -1
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
+L LP GLL F L PL+ W GLG+D + IE A LHYNG MKPWL L +
Sbjct: 432 KLGTLPPGLLTFYGLTEPLDRRWHILGLGYDPNVDMQLIESGAVLHYNGNMKPWLKLAMN 253
Query: 519 DYKNYWRKYL 548
YK++W KY+
Sbjct: 252 RYKSFWEKYV 223
Score = 67.5 bits (141), Expect(3) = 1e-034
Identities = 25/53 (47%), Positives = 40/53 (75%)
Frame = +3 / -1
Query: 3 ISIFGLSHFLLPDLLPSLNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFC 161
+S+ F +P++ P+L +VV LDDD++VQKDL+PL+++D+ G V GAV+ C
Sbjct: 780 LSMLNHLRFYIPEVYPALEKVVFLDDDVVVQKDLTPLFSIDLHGNVNGAVETC 622
Score = 34.1 bits (68), Expect(3) = 1e-034
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3 / -1
Query: 210 DDDSCVWLSGLNVIELDKWRDTGITS 287
D D+C W G+NV +L W+ +TS
Sbjct: 555 DADACGWAFGMNVFDLVAWKKLNVTS 478
>gb|DR689244.1|DR689244 EST1079330 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACF91 3' end, mRNA sequence
Length = 854
Score = 82.2 bits (173), Expect(3) = 8e-034
Identities = 31/70 (44%), Positives = 45/70 (64%)
Frame = +3 / +2
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
+L LP GL+ + PL+ SW GLG++ IS +I AA +H+NG MKPWLD+G+
Sbjct: 371 KLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGMN 550
Query: 519 DYKNYWRKYL 548
Y++ W KY+
Sbjct: 551 QYRDTWTKYV 580
Score = 72.1 bits (151), Expect(3) = 8e-034
Identities = 27/53 (50%), Positives = 39/53 (73%)
Frame = +3 / +2
Query: 3 ISIFGLSHFLLPDLLPSLNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFC 161
+S+ F LP++ P L+R++ LDDD++VQKDL+ LW +DM GKV GAV+ C
Sbjct: 23 LSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMEGKVNGAVETC 181
Score = 27.2 bits (53), Expect(3) = 8e-034
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3 / +2
Query: 219 SCVWLSGLNVIELDKWR 269
+C W G+N LD WR
Sbjct: 257 ACGWAYGMNFFHLDAWR 307
>gb|DR109571.1|DR109571 RTS1_3_E05.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_3_E05_A029 3', mRNA sequence
Length = 820
Score = 82.2 bits (173), Expect(3) = 8e-034
Identities = 31/70 (44%), Positives = 45/70 (64%)
Frame = +3 / +3
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
+L LP GL+ + PL+ SW GLG++ IS +I AA +H+NG MKPWLD+G+
Sbjct: 387 KLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGMN 566
Query: 519 DYKNYWRKYL 548
Y++ W KY+
Sbjct: 567 QYRDTWTKYV 596
Score = 72.1 bits (151), Expect(3) = 8e-034
Identities = 27/53 (50%), Positives = 39/53 (73%)
Frame = +3 / +3
Query: 3 ISIFGLSHFLLPDLLPSLNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFC 161
+S+ F LP++ P L+R++ LDDD++VQKDL+ LW +DM GKV GAV+ C
Sbjct: 39 LSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMEGKVNGAVETC 197
Score = 27.2 bits (53), Expect(3) = 8e-034
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3 / +3
Query: 219 SCVWLSGLNVIELDKWR 269
+C W G+N LD WR
Sbjct: 273 ACGWAYGMNFFHLDAWR 323
>gb|DT635347.1|DT635347 EST1150278 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGF84 3' end, mRNA sequence
Length = 768
Score = 82.2 bits (173), Expect(3) = 8e-034
Identities = 31/70 (44%), Positives = 45/70 (64%)
Frame = +3 / +1
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
+L LP GL+ + PL+ SW GLG++ IS +I AA +H+NG MKPWLD+G+
Sbjct: 379 KLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGMN 558
Query: 519 DYKNYWRKYL 548
Y++ W KY+
Sbjct: 559 QYRDTWTKYV 588
Score = 72.1 bits (151), Expect(3) = 8e-034
Identities = 27/53 (50%), Positives = 39/53 (73%)
Frame = +3 / +1
Query: 3 ISIFGLSHFLLPDLLPSLNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFC 161
+S+ F LP++ P L+R++ LDDD++VQKDL+ LW +DM GKV GAV+ C
Sbjct: 31 LSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMEGKVNGAVETC 189
Score = 27.2 bits (53), Expect(3) = 8e-034
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3 / +1
Query: 219 SCVWLSGLNVIELDKWR 269
+C W G+N LD WR
Sbjct: 265 ACGWAYGMNFFHLDAWR 315
>gb|DR112556.1|DR112556 RTS1_29_B07.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_29_B07_A029 3', mRNA sequence
Length = 688
Score = 78.0 bits (164), Expect(3) = 2e-033
Identities = 32/70 (45%), Positives = 40/70 (57%)
Frame = +3 / +2
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
+L LP GLL+F L PL+ W GLG+D I IE A +H+NG MKPWL L +
Sbjct: 395 KLGTLPPGLLSFYGLTEPLDRRWHVLGLGYDLNIDEQLIESGAVIHFNGNMKPWLKLAMK 574
Query: 519 DYKNYWRKYL 548
YK W Y+
Sbjct: 575 RYKAIWEMYV 604
Score = 68.4 bits (143), Expect(3) = 2e-033
Identities = 25/53 (47%), Positives = 41/53 (77%)
Frame = +3 / +2
Query: 3 ISIFGLSHFLLPDLLPSLNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFC 161
+S+ F +P++ P+L++VV LDDD++VQKDL+PL+++D+ G V GAV+ C
Sbjct: 47 LSMLNHLRFYIPEIYPALDKVVFLDDDVVVQKDLTPLFSIDLHGNVNGAVETC 205
Score = 34.1 bits (68), Expect(3) = 2e-033
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3 / +2
Query: 210 DDDSCVWLSGLNVIELDKWRDTGITS 287
D ++C W G+NV +L W++ +TS
Sbjct: 272 DPEACGWAFGMNVFDLVAWKNANVTS 349
>gb|AI812705.1|AI812705 18B3 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 522
Score = 110 bits (235), Expect(2) = 9e-031
Identities = 40/70 (57%), Positives = 51/70 (72%)
Frame = +3 / +3
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
R LPA L+ F ++ + LEDSW+ GLGHD+GI +DIEK+ LHYNG +KPWL++GI
Sbjct: 219 RFGTLPASLITFYNMTHRLEDSWLSVGLGHDFGIDQLDIEKSPVLHYNGNLKPWLEIGIN 398
Query: 519 DYKNYWRKYL 548
YK YW KYL
Sbjct: 399 KYKPYWAKYL 428
Score = 42.8 bits (87), Expect(2) = 9e-031
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +3 / +3
Query: 129 GGKVIGAVQFCGVRLGQLKPYIADHNVDDDSCVWLSGLNVIELDKWRDTGITSLH 293
G I V+F +R + + D ++C W+SGLN+I+L +WR +T ++
Sbjct: 12 GAMEICEVRFHHLRKYLNSSKLFPNGFDGNACAWMSGLNIIDLQQWRKQDLTKVY 176
>gb|DT633664.1|DT633664 EST1148595 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFX37 3' end, mRNA sequence
Length = 812
Score = 76.7 bits (161), Expect(4) = 4e-027
Identities = 28/64 (43%), Positives = 44/64 (68%)
Frame = +3 / +1
Query: 3 ISIFGLSHFLLPDLLPSLNRVVVLDDDLIVQKDLSPLWNLDMGGKVIGAVQFCGVRLGQL 182
+S+ F LP + P L++++ LDDD++VQKDL+PLW++D+ GKV GAV+ CG +
Sbjct: 313 LSMLNHLRFYLPQVYPKLDKILFLDDDIVVQKDLTPLWSVDLHGKVNGAVETCGESFHRF 492
Query: 183 KPYI 194
Y+
Sbjct: 493 DKYL 504
Score = 34.1 bits (68), Expect(4) = 4e-027
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3 / +1
Query: 210 DDDSCVWLSGLNVIELDKWRDTGITSLH 293
D ++C W G+NV +L +W+ IT ++
Sbjct: 538 DPNACGWAYGMNVFDLKEWKKQDITGIY 621
Score = 33.1 bits (66), Expect(4) = 4e-027
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3 / +1
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESG 419
+L LP GL+ F L +PL+ SW +G
Sbjct: 661 KLGTLPPGLITFYGLTHPLDKSWACAG 741
Score = 32.2 bits (64), Expect(4) = 4e-027
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3 / +2
Query: 417 GLGHDYGISHVDIEKAATLHYNG 485
GLG++ + ++I+ AA +HYNG
Sbjct: 740 GLGYNPSVDRLEIDNAAVVHYNG 808
>gb|AW289781.1|AW289781 NXNV006B06F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006B06 5', mRNA sequence
Length = 465
Score = 91.3 bits (193), Expect(2) = 3e-025
Identities = 33/70 (47%), Positives = 47/70 (67%)
Frame = +3 / +2
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
+L LP GL+ F L + L+ SW GLG++ + +IE+AA +HYNG MKPWLD+ I
Sbjct: 206 KLGTLPPGLITFYHLTFVLDKSWHVLGLGYNPNVDSTEIERAAVIHYNGNMKPWLDIAIP 385
Query: 519 DYKNYWRKYL 548
Y++YW KY+
Sbjct: 386 KYRHYWTKYV 415
Score = 43.7 bits (89), Expect(2) = 3e-025
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +3 / +2
Query: 204 NVDDDSCVWLSGLNVIELDKWRDTGITSLHDQ 299
N D ++C W G+N+ +L++WR GIT ++ Q
Sbjct: 77 NFDPNACGWAYGMNIFDLEEWRKQGITGIYHQ 172
>gb|CD028366.1|CD028366 NXNV006B06 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006B06 5' similar to Arabidopsis thaliana sequence
At3g61130 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 465
Score = 91.3 bits (193), Expect(2) = 3e-025
Identities = 33/70 (47%), Positives = 47/70 (67%)
Frame = +3 / +2
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
+L LP GL+ F L + L+ SW GLG++ + +IE+AA +HYNG MKPWLD+ I
Sbjct: 206 KLGTLPPGLITFYHLTFVLDKSWHVLGLGYNPNVDSTEIERAAVIHYNGNMKPWLDIAIP 385
Query: 519 DYKNYWRKYL 548
Y++YW KY+
Sbjct: 386 KYRHYWTKYV 415
Score = 43.7 bits (89), Expect(2) = 3e-025
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +3 / +2
Query: 204 NVDDDSCVWLSGLNVIELDKWRDTGITSLHDQ 299
N D ++C W G+N+ +L++WR GIT ++ Q
Sbjct: 77 NFDPNACGWAYGMNIFDLEEWRKQGITGIYHQ 172
>gb|CX651405.1|CX651405 COLD1_52_D12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_52_D12_A029 3', mRNA sequence
Length = 659
Score = 110 bits (235), Expect(2) = 4e-024
Identities = 41/116 (35%), Positives = 66/116 (56%)
Frame = +3 / +3
Query: 201 HNVDDDSCVWLSGLNVIELDKWRDTGITSLHDQSVQKLRKDSLKSQRLQALPAGLLAFQD 380
+N D + C W G+N+++L WR T I + ++K +L+ R+ LP L+AF
Sbjct: 114 NNFDPEQCAWAYGMNILDLQAWRRTNIKETYHYWLKKNLNSNLRLWRMGTLPPALIAFNG 293
Query: 381 LVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGILDYKNYWRKYL 548
LV+P++ SW GLG+ + ++ AA +HYNG KPWLD+ + + W KY+
Sbjct: 294 LVHPIDPSWHMLGLGYQPRTNLDSVQSAAVIHYNGRAKPWLDIAFHELRPLWAKYV 461
Score = 21.7 bits (41), Expect(2) = 4e-024
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3 / +3
Query: 123 DMGGKVIGAVQFC 161
D+ GKV GAV+ C
Sbjct: 3 DLQGKVNGAVETC 41
>gb|BG319249.1|BG319249 NXPV_019_E12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_019_E12 5' similar to Arabidopsis
thaliana sequence At3g61130 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 365
Score = 109 bits (232), Expect = 2e-023
Identities = 39/66 (59%), Positives = 50/66 (75%)
Frame = +3 / +1
Query: 351 LPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGILDYKN 530
LPA L+ F ++ + LEDSW+ GLGHD+GI +DIEK+ LHYNG +KPWL++GI YK
Sbjct: 10 LPASLITFYNMTHRLEDSWLSVGLGHDFGIDQLDIEKSPVLHYNGNLKPWLEIGINKYKP 189
Query: 531 YWRKYL 548
YW KYL
Sbjct: 190 YWAKYL 207
>gb|CF396558.1|CF396558 RTDS2_22_C09.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_22_C09_A021 5', mRNA sequence
Length = 797
Score = 90.9 bits (192), Expect(2) = 2e-022
Identities = 32/70 (45%), Positives = 47/70 (67%)
Frame = +3 / -3
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
+L LP GL+ F L +PL+ SW GLG++ + ++I+ AA +HYNG MKPWL+L +
Sbjct: 645 KLGTLPPGLITFYGLTHPLDKSWHVLGLGYNPSVDRLEIDNAAVVHYNGNMKPWLELAMT 466
Query: 519 DYKNYWRKYL 548
Y+ YW KY+
Sbjct: 465 KYRPYWTKYI 436
Score = 34.1 bits (68), Expect(2) = 2e-022
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3 / -3
Query: 210 DDDSCVWLSGLNVIELDKWRDTGITSLH 293
D ++C W G+NV +L +W+ IT ++
Sbjct: 768 DPNACGWAYGMNVFDLKEWKKQDITGIY 685
>gb|DR014696.1|DR014696 HEAT1_51_C03.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_C03_A029 3', mRNA sequence
Length = 914
Score = 82.2 bits (173), Expect(3) = 4e-022
Identities = 31/70 (44%), Positives = 45/70 (64%)
Frame = +3 / +2
Query: 339 RLQALPAGLLAFQDLVYPLEDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGIL 518
+L LP GL+ + PL+ SW GLG++ IS +I AA +H+NG MKPWLD+G+
Sbjct: 251 KLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGMN 430
Query: 519 DYKNYWRKYL 548
Y++ W KY+
Sbjct: 431 QYRDTWTKYV 460
Score = 32.2 bits (64), Expect(3) = 4e-022
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3 / +2
Query: 102 LSPLWNLDMGGKVIGAVQFC 161
L+ LW +DM GKV GAV+ C
Sbjct: 2 LTGLWEIDMKGKVNGAVETC 61
Score = 27.2 bits (53), Expect(3) = 4e-022
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3 / +2
Query: 219 SCVWLSGLNVIELDKWR 269
+C W G+N LD WR
Sbjct: 137 ACGWAYGMNFFHLDAWR 187
>gb|DR744023.1|DR744023 RTCU1_19_F03.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_19_F03_A029 5', mRNA sequence
Length = 764
Score = 103 bits (220), Expect = 9e-022
Identities = 39/111 (35%), Positives = 61/111 (54%)
Frame = +3 / -2
Query: 216 DSCVWLSGLNVIELDKWRDTGITSLHDQSVQKLRKDSLKSQRLQALPAGLLAFQDLVYPL 395
+ C W G+N+ +L WR T I + +++ +L RL LP L+AF V+P+
Sbjct: 724 EQCAWAYGMNIFDLQAWRKTNIRETYHYWLKENLNSNLTLWRLGTLPPALIAFNGHVHPI 545
Query: 396 EDSWVESGLGHDYGISHVDIEKAATLHYNGVMKPWLDLGILDYKNYWRKYL 548
+ SW GLG+ ++ KAA +HYNG KPWLD+ + + +W KY+
Sbjct: 544 DPSWHMLGLGYQPETDLNNVRKAAVIHYNGQAKPWLDIAFPELRPFWTKYI 392
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 319,106,175
Number of Sequences: 355925
Number of extensions: 4697113
Number of successful extensions: 41233
Number of sequences better than 1.0e-020: 18
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 7326931950
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)