TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE6a06.yg.3.1
(2118 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF393526.1|CF393526 RTDR3_13_C09.g1_A022 Loblolly pine r... 287 1e-076
gb|DR169021.1|DR169021 RTPHOS1_29_A11.g1_A029 Roots minus p... 283 4e-075
gb|DR168958.1|DR168958 RTPHOS1_29_A11.b1_A029 Roots minus p... 282 7e-075
gb|DT636640.1|DT636640 EST1151571 Normalized pine embryo li... 165 1e-071
gb|DR386472.1|DR386472 RTHG1_15_A02.g1_A029 Roots plus adde... 148 4e-071
gb|BX248969.1|BX248969 BX248969 Pinus pinaster differenciat... 256 5e-067
gb|DT637125.1|DT637125 EST1152056 Normalized pine embryo li... 218 1e-055
gb|DR692062.1|DR692062 EST1082149 Normalized pine embryo li... 212 6e-054
gb|DR691255.1|DR691255 EST1081341 Normalized pine embryo li... 162 6e-046
gb|DR049364.1|DR049364 RTBOR1_16_A01.b1_A029 Roots plus add... 133 6e-030
gb|DR109803.1|DR109803 RTS1_5_B08.b1_A029 Roots minus sulfu... 108 1e-022
>gb|CF393526.1|CF393526 RTDR3_13_C09.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_13_C09_A022 5', mRNA
sequence
Length = 740
Score = 287 bits (622), Expect = 1e-076
Identities = 114/156 (73%), Positives = 134/156 (85%)
Frame = +2 / +3
Query: 272 NRDLADRLLNRPPTYKLDRLVLERYPTFVDALRDLDDCLTMVHLFAALPAVDGERVEVKR 451
N++LA RL N P+Y LD +V +RYPTF+DALRDLDD LTM+HLFAALPA + +R
Sbjct: 27 NKNLASRLENNRPSYTLDHIVRQRYPTFIDALRDLDDALTMMHLFAALPADKTHDIPAER 206
Query: 452 IHNCRRLSHEWQAYISRTHSLRKTFISVKGIYYQAEVQGQKITWLTPHALQQVLTDDVDF 631
+H+CRRLS EWQAYISRTHSLRKTF+SVKGIYYQAEV+GQ ITWLTPH LQQVL DVDF
Sbjct: 207 VHSCRRLSLEWQAYISRTHSLRKTFVSVKGIYYQAEVEGQNITWLTPHVLQQVLPGDVDF 386
Query: 632 NVMLSFLEFYETLLGFVNFKLYHSINVNYPPILDPR 739
VML+F+EFYETL+GFVNFKLY++I++ YPPILDPR
Sbjct: 387 RVMLTFVEFYETLIGFVNFKLYYAISLKYPPILDPR 494
Score = 156 bits (336), Expect = 4e-037
Identities = 80/128 (62%), Positives = 86/128 (67%)
Frame = -1 / -2
Query: 714 FTFIE**SLKFTNPRRVS*NSRKESITLKSTSSVNTC*RACGVSQVIFCP*TSA**YMPF 535
F I **SLKFTNP RVS*NS SIT KSTS TC R CGVS V+F P TSA** MP
Sbjct: 469 FKDIA**SLKFTNPIRVS*NSTNVSITRKSTSPGRTCCRTCGVSHVMF*PSTSA***MPL 290
Query: 534 TEINVFLREWVRDMYACHSWLNLRQLWIRLTSTRSPSTAGNAANRCTIVRQSSKSRRAST 355
T+ NV +E V +M ACHS LNLRQLW R +AG AA RC IVR SS+SRRAS
Sbjct: 289 TDTNVLRKECVLEM*ACHSRLNLRQLWTRSAGMSCVLSAGKAAKRCIIVRASSRSRRASI 110
Query: 354 NVGYLSRT 331
VGYL T
Sbjct: 109 KVGYLCLT 86
Score = 122 bits (261), Expect = 9e-027
Identities = 68/162 (41%), Positives = 99/162 (61%)
Frame = -3 / -1
Query: 742 QTWIQNRRIIYIY*MIEFEVHKS*KSLIEF*KRKHHIEINIIS*YLLKSMRS*PGDLLSL 563
Q+WI+ I+ Y +I+FE+HKS KSLI+F K +H+ +INI LL++M P ++L+L
Sbjct: 497 QSWIKYWWIL*RYSIIKFEIHKSYKSLIKFYKCQHNTKINIPGENLLQNMWCEPRNVLTL 318
Query: 562 NFGLIIYALHGNKCLPQRMGSGYVCLPFMA*PAAVMDSFDLNTFTVNSR*CRKQMHHCKA 383
+F LI+ AL+ +KCL QRM SG V LP * + +D+ N + K+MHHC++
Sbjct: 317 DFCLIVDALNRHKCLTQRMCSGNVGLPLQT*SSTAVDTLSRNVMCLVCGQSCKKMHHCES 138
Query: 382 VIQVTKSINECWIPFKDKPIKLVSWWPIQQPVCKIPVFLSNS 257
+IQVTKSIN+ I +K + I Q +I V LS S
Sbjct: 137 IIQVTKSINKGRISLPHNMVKSI*RPIILQTRGQIFVLLSQS 12
>gb|DR169021.1|DR169021 RTPHOS1_29_A11.g1_A029 Roots minus phosphorous Pinus taeda cDNA clone
RTPHOS1_29_A11_A029 5', mRNA sequence
Length = 772
Score = 283 bits (612), Expect = 4e-075
Identities = 107/142 (75%), Positives = 130/142 (91%)
Frame = +2 / +2
Query: 1040 CKGLFKNLKFYLSREVPRESLLFIIPAFGGTVSWEGEGAPFKEIDEDITHQIVDRPTQSH 1219
C+ FK+LKF+L REVPRESLLF+I AFGG VSW+G+GAPFKE+D+DITHQIVDRPTQ H
Sbjct: 29 CRTFFKDLKFFLGREVPRESLLFVIQAFGGVVSWDGDGAPFKEMDDDITHQIVDRPTQGH 208
Query: 1220 VFLSREYVQPQWVFDCVNARIILPTEGYLVGRVPPPHLSPFVDNDAEGYMPEYAETIKRL 1399
FLSR+YVQPQWV+DCVN+R+ILPT+ Y+VGRVPPPHLSPFVD +AEGYMPEYA+TIKRL
Sbjct: 209 KFLSRDYVQPQWVYDCVNSRLILPTDDYMVGRVPPPHLSPFVDEEAEGYMPEYAKTIKRL 388
Query: 1400 QAAARNEVLPLPGIGDEDLDNS 1465
QAAA+ ++LPL GI D+D+++S
Sbjct: 389 QAAAKKQLLPLAGIEDQDINDS 454
Score = 156 bits (335), Expect = 6e-037
Identities = 79/136 (58%), Positives = 86/136 (63%)
Frame = -1 / -2
Query: 1446 SPIPGRGNTSLRAAAWSLFIVSAYSGM*PSASLSTKGDKCGGGTLPTR*PSVGNMIRAFT 1267
S IP +G + AAA IV AYSGM*PSAS STKGD+ GGGTLPT * SVG + R FT
Sbjct: 435 SSIPAKGKSCFFAAACKRLIVLAYSGM*PSASSSTKGDR*GGGTLPTM*SSVGKIRREFT 256
Query: 1266 QSKTHCG*TYSLERKTWLCVGLXXXXXXXXXXXSLNGAPSPSHETVPPNAGIINNRDSLG 1087
QS TH G*T SL++ W VG SL GAPSPSHET PP A I + DSLG
Sbjct: 255 QS*TH*G*T*SLDKNLWPWVGRSTIWCVMSSSISLKGAPSPSHETTPPKA*ITKSNDSLG 76
Query: 1086 TSRLK*NFKFLNKPLQ 1039
TSR K NFK L LQ
Sbjct: 75 TSRPKKNFKSLKNVLQ 28
>gb|DR168958.1|DR168958 RTPHOS1_29_A11.b1_A029 Roots minus phosphorous Pinus taeda cDNA clone
RTPHOS1_29_A11_A029 3', mRNA sequence
Length = 801
Score = 282 bits (610), Expect = 7e-075
Identities = 107/142 (75%), Positives = 129/142 (90%)
Frame = +2 / +1
Query: 1040 CKGLFKNLKFYLSREVPRESLLFIIPAFGGTVSWEGEGAPFKEIDEDITHQIVDRPTQSH 1219
C+ FK+LKF+L REVPRESLLF+I AFGG VSW+G+GAPFKE D+DITHQIVDRPTQ H
Sbjct: 34 CRTFFKDLKFFLGREVPRESLLFVIQAFGGVVSWDGDGAPFKETDDDITHQIVDRPTQGH 213
Query: 1220 VFLSREYVQPQWVFDCVNARIILPTEGYLVGRVPPPHLSPFVDNDAEGYMPEYAETIKRL 1399
FLSR+YVQPQWV+DCVN+R+ILPT+ Y+VGRVPPPHLSPFVD +AEGYMPEYA+TIKRL
Sbjct: 214 KFLSRDYVQPQWVYDCVNSRLILPTDDYMVGRVPPPHLSPFVDEEAEGYMPEYAKTIKRL 393
Query: 1400 QAAARNEVLPLPGIGDEDLDNS 1465
QAAA+ ++LPL GI D+D+++S
Sbjct: 394 QAAAKKQLLPLAGIEDQDINDS 459
Score = 156 bits (335), Expect = 6e-037
Identities = 79/136 (58%), Positives = 86/136 (63%)
Frame = -1 / -2
Query: 1446 SPIPGRGNTSLRAAAWSLFIVSAYSGM*PSASLSTKGDKCGGGTLPTR*PSVGNMIRAFT 1267
S IP +G + AAA IV AYSGM*PSAS STKGD+ GGGTLPT * SVG + R FT
Sbjct: 440 SSIPAKGKSCFFAAACKRLIVLAYSGM*PSASSSTKGDR*GGGTLPTM*SSVGKIRREFT 261
Query: 1266 QSKTHCG*TYSLERKTWLCVGLXXXXXXXXXXXSLNGAPSPSHETVPPNAGIINNRDSLG 1087
QS TH G*T SL++ W VG SL GAPSPSHET PP A I + DSLG
Sbjct: 260 QS*TH*G*T*SLDKNLWPWVGRSTIWCVMSSSVSLKGAPSPSHETTPPKA*ITKSNDSLG 81
Query: 1086 TSRLK*NFKFLNKPLQ 1039
TSR K NFK L LQ
Sbjct: 80 TSRPKKNFKSLKNVLQ 33
>gb|DT636640.1|DT636640 EST1151571 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGU20 3' end, mRNA sequence
Length = 756
Score = 165 bits (354), Expect(3) = 1e-071
Identities = 64/80 (80%), Positives = 73/80 (91%)
Frame = +2 / +2
Query: 500 RTHSLRKTFISVKGIYYQAEVQGQKITWLTPHALQQVLTDDVDFNVMLSFLEFYETLLGF 679
R HSLRKTF+SVKGIYYQAEV+GQ ITWLTPH LQQVL DVDF VML+F+EFYETL+GF
Sbjct: 5 RAHSLRKTFVSVKGIYYQAEVEGQNITWLTPHVLQQVLPGDVDFRVMLTFVEFYETLIGF 184
Query: 680 VNFKLYHSINVNYPPILDPR 739
VNFKLY++I++ YPPILDPR
Sbjct: 185 VNFKLYYAISLKYPPILDPR 244
Score = 130 bits (278), Expect(3) = 1e-071
Identities = 50/65 (76%), Positives = 57/65 (87%)
Frame = +2 / +2
Query: 1040 CKGLFKNLKFYLSREVPRESLLFIIPAFGGTVSWEGEGAPFKEIDEDITHQIVDRPTQSH 1219
C+ FK+LKF+L REVPRESLLF+I AFGG VSW+G+GAPFKE D+DITHQIVDRPTQ H
Sbjct: 560 CRTFFKDLKFFLGREVPRESLLFVIQAFGGVVSWDGDGAPFKETDDDITHQIVDRPTQGH 739
Query: 1220 VFLSR 1234
FLSR
Sbjct: 740 KFLSR 754
Score = 86.3 bits (182), Expect(2) = 7e-030
Identities = 46/72 (63%), Positives = 49/72 (68%)
Frame = -1 / -1
Query: 714 FTFIE**SLKFTNPRRVS*NSRKESITLKSTSSVNTC*RACGVSQVIFCP*TSA**YMPF 535
F I **SLKFTNP RVS*NS SIT KSTS TC R CGVS V+F P TSA** MP
Sbjct: 219 FKDIA**SLKFTNPIRVS*NSTNVSITRKSTSPGRTCCRTCGVSHVMF*PSTSA***MPL 40
Query: 534 TEINVFLREWVR 499
T+ NV +E R
Sbjct: 39 TDTNVLRKECAR 4
Score = 70.3 bits (147), Expect(2) = 7e-030
Identities = 34/66 (51%), Positives = 37/66 (56%)
Frame = -1 / -1
Query: 1236 SLERKTWLCVGLXXXXXXXXXXXSLNGAPSPSHETVPPNAGIINNRDSLGTSRLK*NFKF 1057
SL++ W VG SL GAPSPSHET PP A I + DSLGTSR K NFK
Sbjct: 756 SLDKNLWPWVGRSTIWCVMSSSVSLKGAPSPSHETTPPKA*ITKSNDSLGTSRPKKNFKS 577
Query: 1056 LNKPLQ 1039
L LQ
Sbjct: 576 LKNVLQ 559
Score = 22.6 bits (43), Expect(3) = 1e-071
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2 / +2
Query: 920 ESELRLAQLQHQL 958
ES+ RLA LQH+L
Sbjct: 401 ESQARLALLQHRL 439
>gb|DR386472.1|DR386472 RTHG1_15_A02.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_15_A02_A029 5', mRNA sequence
Length = 754
Score = 148 bits (318), Expect(4) = 4e-071
Identities = 60/100 (60%), Positives = 71/100 (71%)
Frame = +2 / +1
Query: 434 RVEVKRIHNCRRLSHEWQAYISRTHSLRKTFISVKGIYYQAEVQGQKITWLTPHALQQVL 613
RV I NC RL+ EWQ YIS +HSLRK F+S+KG+YYQAEV GQ +TWL P+ Q +
Sbjct: 451 RVSTALIDNCTRLAAEWQLYISHSHSLRKVFLSIKGVYYQAEVMGQTVTWLVPYQFTQNV 630
Query: 614 TDDVDFNVMLSFLEFYETLLGFVNFKLYHSINVNYPPILD 733
DVD VML+FLE Y+TLLGFV FKLY + YPP LD
Sbjct: 631 PADVDVRVMLTFLELYQTLLGFVFFKLYTDAGLVYPPPLD 750
Score = 70.3 bits (147), Expect(4) = 4e-071
Identities = 27/46 (58%), Positives = 35/46 (76%)
Frame = +2 / +1
Query: 284 ADRLLNRPPTYKLDRLVLERYPTFVDALRDLDDCLTMVHLFAALPA 421
A L + PTY+LD ++ ERYPTF+DA+RD+DD L M+ LFA LPA
Sbjct: 307 AKSLDDHKPTYRLDHIIKERYPTFIDAVRDIDDALCMIFLFANLPA 444
Score = 68.4 bits (143), Expect(4) = 4e-071
Identities = 27/48 (56%), Positives = 36/48 (75%)
Frame = +2 / +1
Query: 11 KKKEGNAAKYITRTKAVNYLQVSLAIFRKLCILKGVFPRQPKKKVEGN 154
K K G A Y+TR+ AV LQ+SLA FR+LCILKG+FPR+P+ + + N
Sbjct: 19 KGKAGAAKAYVTRSAAVKKLQISLADFRRLCILKGIFPREPRHRKKAN 162
Score = 40.5 bits (82), Expect(4) = 4e-071
Identities = 13/22 (59%), Positives = 19/22 (86%)
Frame = +2 / +1
Query: 161 TYYHTKDIAFLAHDPLIEKFRE 226
T+Y+ KDIA+LAH+P++ K RE
Sbjct: 184 TFYYAKDIAYLAHEPVLRKLRE 249
>gb|BX248969.1|BX248969 BX248969 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP003D01, mRNA sequence
Length = 682
Score = 256 bits (553), Expect = 5e-067
Identities = 101/131 (77%), Positives = 116/131 (88%)
Frame = +2 / +1
Query: 347 PTFVDALRDLDDCLTMVHLFAALPAVDGERVEVKRIHNCRRLSHEWQAYISRTHSLRKTF 526
PTF+DALRDLDD LTM+HLFAALPA + +R+H+CRRLS EWQAYISRTHSLRKTF
Sbjct: 1 PTFIDALRDLDDALTMMHLFAALPADKTHDIPAERVHSCRRLSLEWQAYISRTHSLRKTF 180
Query: 527 ISVKGIYYQAEVQGQKITWLTPHALQQVLTDDVDFNVMLSFLEFYETLLGFVNFKLYHSI 706
+SVKGIYYQAEV+GQ ITWLTPH LQQVL DVDF VML+F+EFYETL+GFVNFKLY++I
Sbjct: 181 VSVKGIYYQAEVEGQNITWLTPHVLQQVLPGDVDFRVMLTFVEFYETLIGFVNFKLYYAI 360
Query: 707 NVNYPPILDPR 739
++ YPPILDPR
Sbjct: 361 SLKYPPILDPR 393
Score = 146 bits (313), Expect = 6e-034
Identities = 75/122 (61%), Positives = 82/122 (67%)
Frame = -1 / -3
Query: 714 FTFIE**SLKFTNPRRVS*NSRKESITLKSTSSVNTC*RACGVSQVIFCP*TSA**YMPF 535
F I **SLKFTNP RVS*NS SIT KSTS TC R CGVS V+F P TSA** MP
Sbjct: 368 FKDIA**SLKFTNPIRVS*NSTNVSITRKSTSPGRTCCRTCGVSHVMF*PSTSA***MPL 189
Query: 534 TEINVFLREWVRDMYACHSWLNLRQLWIRLTSTRSPSTAGNAANRCTIVRQSSKSRRAST 355
T+ NV +E V ++ ACHS LNLRQLW R +AG AA RC IVR SS+SRRAS
Sbjct: 188 TDTNVLRKECVLEI*ACHSRLNLRQLWTRSAGMSCVLSAGKAAKRCIIVRASSRSRRASI 9
Query: 354 NV 349
V
Sbjct: 8 KV 3
Score = 119 bits (255), Expect = 6e-026
Identities = 58/130 (44%), Positives = 87/130 (66%)
Frame = -3 / -2
Query: 742 QTWIQNRRIIYIY*MIEFEVHKS*KSLIEF*KRKHHIEINIIS*YLLKSMRS*PGDLLSL 563
Q+WI+ I+ Y +I+FE+HKS KSLI+F K +H+ +INI LL++M P ++L+L
Sbjct: 396 QSWIKYWWIL*RYSIIKFEIHKSYKSLIKFYKCQHNTKINIPGENLLQNMWCEPRNVLTL 217
Query: 562 NFGLIIYALHGNKCLPQRMGSGYVCLPFMA*PAAVMDSFDLNTFTVNSR*CRKQMHHCKA 383
+F LI+ AL+ +KCL QRM SG + LP * + +D+ N + K+MHHC++
Sbjct: 216 DFCLIVDALNRHKCLTQRMCSGNIGLPLQT*SSTAVDTLSRNVMCLVCGQSCKKMHHCES 37
Query: 382 VIQVTKSINE 353
+IQVTKSIN+
Sbjct: 36 IIQVTKSINK 7
>gb|DT637125.1|DT637125 EST1152056 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMH002 3' end, mRNA sequence
Length = 838
Score = 218 bits (470), Expect = 1e-055
Identities = 83/107 (77%), Positives = 98/107 (91%)
Frame = +2 / +2
Query: 1145 GEGAPFKEIDEDITHQIVDRPTQSHVFLSREYVQPQWVFDCVNARIILPTEGYLVGRVPP 1324
G GAPFKE D+DITHQIVDRPTQ H FLSR+YVQPQWV+DCVN+R+ILPT+ Y+VGRVPP
Sbjct: 2 GRGAPFKETDDDITHQIVDRPTQGHKFLSRDYVQPQWVYDCVNSRLILPTDDYMVGRVPP 181
Query: 1325 PHLSPFVDNDAEGYMPEYAETIKRLQAAARNEVLPLPGIGDEDLDNS 1465
PHLSPFVD +AEGYMPEYA+TIKRLQAAAR ++LPL GI D+D+++S
Sbjct: 182 PHLSPFVDEEAEGYMPEYAKTIKRLQAAARKQLLPLAGIEDQDINDS 322
Score = 109 bits (233), Expect = 7e-023
Identities = 56/101 (55%), Positives = 62/101 (61%)
Frame = -1 / -2
Query: 1446 SPIPGRGNTSLRAAAWSLFIVSAYSGM*PSASLSTKGDKCGGGTLPTR*PSVGNMIRAFT 1267
S IP +G + AAA IV AYSGM*PSAS STKGD+ GGGTLPT * SVG + R FT
Sbjct: 303 SSIPAKGKSCFLAAACKRLIVLAYSGM*PSASSSTKGDR*GGGTLPTM*SSVGKIRREFT 124
Query: 1266 QSKTHCG*TYSLERKTWLCVGLXXXXXXXXXXXSLNGAPSP 1144
QS TH G*T SL++ W VG SL GAP P
Sbjct: 123 QS*TH*G*T*SLDKNLWPWVGRSTIWCVMSSSVSLKGAPRP 1
>gb|DR692062.1|DR692062 EST1082149 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADH52 3' end, mRNA sequence
Length = 676
Score = 212 bits (458), Expect = 6e-054
Identities = 81/104 (77%), Positives = 96/104 (92%)
Frame = +2 / +3
Query: 1154 APFKEIDEDITHQIVDRPTQSHVFLSREYVQPQWVFDCVNARIILPTEGYLVGRVPPPHL 1333
APFKE D+DITHQIVDRPTQ H FLSR+YVQPQWV+DCVN+R+ILPT+ Y+VGRVPPPHL
Sbjct: 3 APFKETDDDITHQIVDRPTQGHKFLSRDYVQPQWVYDCVNSRLILPTDDYMVGRVPPPHL 182
Query: 1334 SPFVDNDAEGYMPEYAETIKRLQAAARNEVLPLPGIGDEDLDNS 1465
SPFVD +AEGYMPEYA+TIKRLQAAAR ++LPL GI D+D+++S
Sbjct: 183 SPFVDEEAEGYMPEYAKTIKRLQAAARKQLLPLAGIEDQDINDS 314
Score = 103 bits (220), Expect = 4e-021
Identities = 54/98 (55%), Positives = 60/98 (61%)
Frame = -1 / -1
Query: 1446 SPIPGRGNTSLRAAAWSLFIVSAYSGM*PSASLSTKGDKCGGGTLPTR*PSVGNMIRAFT 1267
S IP +G + AAA IV AYSGM*PSAS STKGD+ GGGTLPT * SVG + R FT
Sbjct: 295 SSIPAKGKSCFLAAACKRLIVLAYSGM*PSASSSTKGDR*GGGTLPTM*SSVGKIRREFT 116
Query: 1266 QSKTHCG*TYSLERKTWLCVGLXXXXXXXXXXXSLNGA 1153
QS TH G*T SL++ W VG SL GA
Sbjct: 115 QS*TH*G*T*SLDKNLWPWVGRSTIWCVMSSSVSLKGA 2
>gb|DR691255.1|DR691255 EST1081341 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD614 3' end, mRNA sequence
Length = 684
Score = 162 bits (349), Expect(4) = 6e-046
Identities = 63/78 (80%), Positives = 72/78 (92%)
Frame = +2 / +3
Query: 506 HSLRKTFISVKGIYYQAEVQGQKITWLTPHALQQVLTDDVDFNVMLSFLEFYETLLGFVN 685
HSLRKTF+SVKGIYYQAEV+GQ ITWLTPH LQQVL DVDF VML+F+EFYETL+GFVN
Sbjct: 3 HSLRKTFVSVKGIYYQAEVEGQNITWLTPHVLQQVLPGDVDFRVMLTFVEFYETLIGFVN 182
Query: 686 FKLYHSINVNYPPILDPR 739
FKLY++I++ YPPILDPR
Sbjct: 183 FKLYYAISLKYPPILDPR 236
Score = 41.8 bits (85), Expect(4) = 6e-046
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +2 / +3
Query: 1040 CKGLFKNLKFYLSREVPRESLLFI 1111
C FK+LKF+L REVPRESLL +
Sbjct: 552 CTTFFKDLKFFLGREVPRESLLLL 623
Score = 23.5 bits (45), Expect(4) = 6e-046
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2 / +3
Query: 1103 LFIIPAFGGTVSWEGEG 1153
L ++ +FGG VSW+ G
Sbjct: 612 LLLLFSFGGVVSWDVMG 662
Score = 22.6 bits (43), Expect(4) = 6e-046
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2 / +3
Query: 920 ESELRLAQLQHQL 958
ES+ RLA LQH+L
Sbjct: 393 ESQARLALLQHRL 431
>gb|DR049364.1|DR049364 RTBOR1_16_A01.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_16_A01_A029 3', mRNA sequence
Length = 799
Score = 133 bits (284), Expect = 6e-030
Identities = 50/68 (73%), Positives = 63/68 (92%)
Frame = +2 / -2
Query: 1262 DCVNARIILPTEGYLVGRVPPPHLSPFVDNDAEGYMPEYAETIKRLQAAARNEVLPLPGI 1441
DCVN+R+ILPT+ Y+VGRVPPPHLSPFVD +AEGYMPEYA+TIKRLQAAA+ ++LPL GI
Sbjct: 780 DCVNSRLILPTDDYMVGRVPPPHLSPFVDEEAEGYMPEYAKTIKRLQAAAKKQLLPLAGI 601
Query: 1442 GDEDLDNS 1465
D+D+++S
Sbjct: 600 EDQDINDS 577
>gb|DR109803.1|DR109803 RTS1_5_B08.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_5_B08_A029 3', mRNA sequence
Length = 423
Score = 108 bits (231), Expect = 1e-022
Identities = 41/57 (71%), Positives = 52/57 (91%)
Frame = +2 / +1
Query: 1295 EGYLVGRVPPPHLSPFVDNDAEGYMPEYAETIKRLQAAARNEVLPLPGIGDEDLDNS 1465
+ Y+VGRVPPPHLSPFVD +AEGYMPEYA+TIKRLQAAA+ ++LPL GI D+D+++S
Sbjct: 1 DDYMVGRVPPPHLSPFVDEEAEGYMPEYAKTIKRLQAAAKKQLLPLAGIEDQDINDS 171
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 985,407,267
Number of Sequences: 355925
Number of extensions: 13739639
Number of successful extensions: 56264
Number of sequences better than 1.0e-020: 13
length of database: 72,425,745
effective HSP length: 55
effective length of database: 52,849,870
effective search space used: 34352415500
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)