TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD12g05.sg.3.2
(900 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF474585.1|CF474585 RTWW2_9_E02.g1_A021 Well-watered lob... 334 7e-091
gb|CX712282.1|CX712282 RTPQ1_1_B12.g1_A032 Roots treated wi... 334 7e-091
gb|DR014315.1|DR014315 HEAT1_24_F01.g1_A029 Root at 37 C fo... 334 7e-091
gb|DR180229.1|DR180229 RTMNUT1_27_F08.b1_A029 Roots minus m... 334 7e-091
gb|DR178073.1|DR178073 RTMNUT1_9_D08.b1_A029 Roots minus mi... 324 5e-088
gb|DN445913.1|DN445913 EST941712 Sequencing ESTs from loblo... 324 7e-088
gb|DR178147.1|DR178147 RTMNUT1_9_D08.g1_A029 Roots minus mi... 308 5e-083
gb|DR180307.1|DR180307 RTMNUT1_27_F08.g1_A029 Roots minus m... 294 5e-079
gb|CF385050.1|CF385050 RTDR1_1_A07.g1_A015 Loblolly pine ro... 293 9e-079
gb|CX651523.1|CX651523 COLD1_53_A12.b1_A029 Root cold Pinus... 293 1e-078
gb|DT638511.1|DT638511 EST1153442 Normalized pine embryo li... 178 8e-076
gb|DR694454.1|DR694454 EST1084546 Normalized pine embryo li... 178 8e-076
gb|BG040217.1|BG040217 NXSI_109_H04_F NXSI (Nsf Xylem Side ... 275 4e-073
gb|DR692610.1|DR692610 EST1082698 Normalized pine embryo li... 272 3e-072
gb|CX712206.1|CX712206 RTPQ1_1_B12.b2_A032 Roots treated wi... 266 1e-070
gb|CF474483.1|CF474483 RTWW2_9_E02.b1_A021 Well-watered lob... 221 6e-057
gb|AW784079.1|AW784079 NXNV_117_E06_F Nsf Xylem Normal wood... 188 5e-047
gb|AW289839.1|AW289839 NXNV006C04F Nsf Xylem Normal wood Ve... 177 1e-043
gb|CD028376.1|CD028376 NXNV006C04 Nsf Xylem Normal wood Ver... 177 1e-043
gb|BX251284.1|BX251284 BX251284 Pinus pinaster differenciat... 165 5e-040
gb|CX651593.1|CX651593 COLD1_53_A12.g1_A029 Root cold Pinus... 144 1e-033
gb|DR014233.1|DR014233 HEAT1_24_F01.b1_A029 Root at 37 C fo... 109 4e-023
>gb|CF474585.1|CF474585 RTWW2_9_E02.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_9_E02_A021 5', mRNA sequence
Length = 687
Score = 334 bits (723), Expect = 7e-091
Identities = 130/213 (61%), Positives = 166/213 (77%)
Frame = +1 / +2
Query: 112 GHPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLVSGRCVRLSKTDRLLMCWW 291
GHPY P +L LPG+VPL L Q +I+ Y ASV V +W +SGRC ++S DR+LMCWW
Sbjct: 38 GHPYYPEDLQLPGYVPLFLPQSQIVGVYGIASVLVVTLIWFISGRCPKISSIDRILMCWW 217
Query: 292 AFTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSRYVARDTATVTVEGITAVL 471
AFTGLTH+++EG FVF+P+F+K E+P + EVWKEYSKGDSRY ARD+A VTVEGITAV+
Sbjct: 218 AFTGLTHLVLEGYFVFSPNFYKLESPFYLAEVWKEYSKGDSRYAARDSAVVTVEGITAVI 397
Query: 472 EGPASLLAVYAIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFI 651
EGPA LLAVYAIA+RK +++ LQ A+ LGQLYG +VYF+TA+L+G NF G +Y+W+YF+
Sbjct: 398 EGPACLLAVYAIAARKPYNYTLQLAISLGQLYGDIVYFVTAFLEGDNFSAGRYYYWSYFV 577
Query: 652 GANSFWIWIPMLIAIRSWKKTCAAFQAEKVKKT 750
ANSFW+ IP +IA+R WKK AF K K +
Sbjct: 578 LANSFWLVIPAIIAVRCWKKISHAFLTAKPKNS 676
Score = 146 bits (314), Expect(2) = 5e-044
Identities = 74/122 (60%), Positives = 82/122 (67%)
Frame = -2 / -1
Query: 749 VFFTFSA*NAAQVFFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*TRH 570
+FF F+ A +FFQ L A+ GI QKLFA K Q * P +KL PSK AV K T
Sbjct: 675 LFFGFAVKKA*LIFFQHLTAIIAGITNQKLFANTK*LQ**YRPAEKLSPSKNAVTKYTMS 496
Query: 569 P*SWPRQTANWRMWLKDFLDAIA*TASSDAGPSNTAVIPSTVTVAVSLATYLESPLLYSF 390
P*SWP++ ANW + L FL AIA TA AGPS TAVIPSTVT A SLA YLESPLLYSF
Sbjct: 495 P*SWPKEIANWSV*LYGFLAAIAYTARRQAGPSITAVIPSTVTTAESLAAYLESPLLYSF 316
Query: 389 QT 384
QT
Sbjct: 315 QT 310
Score = 51.9 bits (107), Expect(2) = 5e-044
Identities = 25/46 (54%), Positives = 30/46 (65%)
Frame = -2 / -1
Query: 338 KTKGPSIIMWVNPVNAHQHMSRRSVLDNLTHLPETSQTARKTKTEA 201
KTK PS VNPVNAHQH+ S+ + L HLPE +Q T+TEA
Sbjct: 264 KTKYPSRTR*VNPVNAHQHIRILSMDEILGHLPEMNQMRVTTRTEA 127
>gb|CX712282.1|CX712282 RTPQ1_1_B12.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_1_B12_A032 5', mRNA sequence
Length = 870
Score = 334 bits (723), Expect = 7e-091
Identities = 130/213 (61%), Positives = 166/213 (77%)
Frame = +1 / +2
Query: 112 GHPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLVSGRCVRLSKTDRLLMCWW 291
GHPY P +L LPG+VPL L Q +I+ Y ASV V +W +SGRC ++S DR+LMCWW
Sbjct: 110 GHPYYPEDLQLPGYVPLFLPQSQIVGVYGIASVLVVTLIWFISGRCSKISSIDRILMCWW 289
Query: 292 AFTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSRYVARDTATVTVEGITAVL 471
AFTGLTH+++EG FVF+P+F+K E+P + EVWKEYSKGDSRY ARD+A VTVEGITAV+
Sbjct: 290 AFTGLTHLVLEGYFVFSPNFYKLESPFYLAEVWKEYSKGDSRYAARDSAVVTVEGITAVI 469
Query: 472 EGPASLLAVYAIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFI 651
EGPA LLAVYAIA+RK +++ LQ A+ LGQLYG +VYF+TA+L+G NF G +Y+W+YF+
Sbjct: 470 EGPACLLAVYAIAARKPYNYTLQLAISLGQLYGDIVYFVTAFLEGDNFSAGRYYYWSYFV 649
Query: 652 GANSFWIWIPMLIAIRSWKKTCAAFQAEKVKKT 750
ANSFW+ IP +IA+R WKK AF K K +
Sbjct: 650 LANSFWLVIPAIIAVRCWKKISHAFLTAKPKNS 748
Score = 146 bits (314), Expect(2) = 3e-044
Identities = 74/122 (60%), Positives = 82/122 (67%)
Frame = -2 / -1
Query: 749 VFFTFSA*NAAQVFFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*TRH 570
+FF F+ A +FFQ L A+ GI QKLFA K Q * P +KL PSK AV K T
Sbjct: 747 LFFGFAVKKA*LIFFQHLTAIIAGITNQKLFANTK*LQ**YRPAEKLSPSKNAVTKYTMS 568
Query: 569 P*SWPRQTANWRMWLKDFLDAIA*TASSDAGPSNTAVIPSTVTVAVSLATYLESPLLYSF 390
P*SWP++ ANW + L FL AIA TA AGPS TAVIPSTVT A SLA YLESPLLYSF
Sbjct: 567 P*SWPKEIANWSV*LYGFLAAIAYTARRQAGPSITAVIPSTVTTAESLAAYLESPLLYSF 388
Query: 389 QT 384
QT
Sbjct: 387 QT 382
Score = 52.4 bits (108), Expect(2) = 3e-044
Identities = 25/46 (54%), Positives = 30/46 (65%)
Frame = -2 / -1
Query: 338 KTKGPSIIMWVNPVNAHQHMSRRSVLDNLTHLPETSQTARKTKTEA 201
KTK PS VNPVNAHQH+ S+ + L HLPE +Q T+TEA
Sbjct: 336 KTKYPSRTR*VNPVNAHQHIRILSMDEILEHLPEMNQMRVTTRTEA 199
>gb|DR014315.1|DR014315 HEAT1_24_F01.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_24_F01_A029 5', mRNA sequence
Length = 887
Score = 334 bits (723), Expect = 7e-091
Identities = 130/213 (61%), Positives = 166/213 (77%)
Frame = +1 / -2
Query: 112 GHPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLVSGRCVRLSKTDRLLMCWW 291
GHPY P +L LPG+VPL L Q +I+ Y ASV V +W +SGRC ++S DR+LMCWW
Sbjct: 718 GHPYYPEDLQLPGYVPLFLPQSQIVGVYGIASVLVVTLIWFISGRCSKISSIDRILMCWW 539
Query: 292 AFTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSRYVARDTATVTVEGITAVL 471
AFTGLTH+++EG FVF+P+F+K E+P + EVWKEYSKGDSRY ARD+A VTVEGITAV+
Sbjct: 538 AFTGLTHLVLEGYFVFSPNFYKLESPFYLAEVWKEYSKGDSRYAARDSAVVTVEGITAVI 359
Query: 472 EGPASLLAVYAIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFI 651
EGPA LLAVYAIA+RK +++ LQ A+ LGQLYG +VYF+TA+L+G NF G +Y+W+YF+
Sbjct: 358 EGPACLLAVYAIAARKPYNYTLQLAISLGQLYGDIVYFVTAFLEGDNFSAGRYYYWSYFV 179
Query: 652 GANSFWIWIPMLIAIRSWKKTCAAFQAEKVKKT 750
ANSFW+ IP +IA+R WKK AF K K +
Sbjct: 178 LANSFWLVIPAIIAVRCWKKISHAFLTAKPKNS 80
Score = 146 bits (314), Expect(2) = 3e-044
Identities = 74/122 (60%), Positives = 82/122 (67%)
Frame = -2 / +3
Query: 749 VFFTFSA*NAAQVFFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*TRH 570
+FF F+ A +FFQ L A+ GI QKLFA K Q * P +KL PSK AV K T
Sbjct: 81 LFFGFAVKKA*LIFFQHLTAIIAGITNQKLFANTK*LQ**YRPAEKLSPSKNAVTKYTMS 260
Query: 569 P*SWPRQTANWRMWLKDFLDAIA*TASSDAGPSNTAVIPSTVTVAVSLATYLESPLLYSF 390
P*SWP++ ANW + L FL AIA TA AGPS TAVIPSTVT A SLA YLESPLLYSF
Sbjct: 261 P*SWPKEIANWSV*LYGFLAAIAYTARRQAGPSITAVIPSTVTTAESLAAYLESPLLYSF 440
Query: 389 QT 384
QT
Sbjct: 441 QT 446
Score = 52.4 bits (108), Expect(2) = 3e-044
Identities = 25/46 (54%), Positives = 30/46 (65%)
Frame = -2 / +3
Query: 338 KTKGPSIIMWVNPVNAHQHMSRRSVLDNLTHLPETSQTARKTKTEA 201
KTK PS VNPVNAHQH+ S+ + L HLPE +Q T+TEA
Sbjct: 492 KTKYPSRTR*VNPVNAHQHIRILSMDEILEHLPEMNQMRVTTRTEA 629
>gb|DR180229.1|DR180229 RTMNUT1_27_F08.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_27_F08_A029 3', mRNA sequence
Length = 878
Score = 334 bits (723), Expect = 7e-091
Identities = 130/213 (61%), Positives = 166/213 (77%)
Frame = +1 / +2
Query: 112 GHPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLVSGRCVRLSKTDRLLMCWW 291
GHPY P +L LPG+VPL L Q +I+ Y ASV V +W +SGRC ++S DR+LMCWW
Sbjct: 89 GHPYYPEDLQLPGYVPLFLPQSQIVGVYGIASVLVVTLIWFISGRCSKISSIDRILMCWW 268
Query: 292 AFTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSRYVARDTATVTVEGITAVL 471
AFTGLTH+++EG FVF+P+F+K E+P + EVWKEYSKGDSRY ARD+A VTVEGITAV+
Sbjct: 269 AFTGLTHLVLEGYFVFSPNFYKLESPFYLAEVWKEYSKGDSRYAARDSAVVTVEGITAVI 448
Query: 472 EGPASLLAVYAIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFI 651
EGPA LLAVYAIA+RK +++ LQ A+ LGQLYG +VYF+TA+L+G NF G +Y+W+YF+
Sbjct: 449 EGPACLLAVYAIAARKPYNYTLQLAISLGQLYGDIVYFVTAFLEGDNFSAGRYYYWSYFV 628
Query: 652 GANSFWIWIPMLIAIRSWKKTCAAFQAEKVKKT 750
ANSFW+ IP +IA+R WKK AF K K +
Sbjct: 629 LANSFWLVIPAIIAVRCWKKISHAFLTAKPKNS 727
Score = 146 bits (314), Expect(2) = 3e-044
Identities = 74/122 (60%), Positives = 82/122 (67%)
Frame = -2 / -3
Query: 749 VFFTFSA*NAAQVFFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*TRH 570
+FF F+ A +FFQ L A+ GI QKLFA K Q * P +KL PSK AV K T
Sbjct: 726 LFFGFAVKKA*LIFFQHLTAIIAGITNQKLFANTK*LQ**YRPAEKLSPSKNAVTKYTMS 547
Query: 569 P*SWPRQTANWRMWLKDFLDAIA*TASSDAGPSNTAVIPSTVTVAVSLATYLESPLLYSF 390
P*SWP++ ANW + L FL AIA TA AGPS TAVIPSTVT A SLA YLESPLLYSF
Sbjct: 546 P*SWPKEIANWSV*LYGFLAAIAYTARRQAGPSITAVIPSTVTTAESLAAYLESPLLYSF 367
Query: 389 QT 384
QT
Sbjct: 366 QT 361
Score = 52.4 bits (108), Expect(2) = 3e-044
Identities = 25/46 (54%), Positives = 30/46 (65%)
Frame = -2 / -3
Query: 338 KTKGPSIIMWVNPVNAHQHMSRRSVLDNLTHLPETSQTARKTKTEA 201
KTK PS VNPVNAHQH+ S+ + L HLPE +Q T+TEA
Sbjct: 315 KTKYPSRTR*VNPVNAHQHIRILSMDEILEHLPEMNQMRVTTRTEA 178
>gb|DR178073.1|DR178073 RTMNUT1_9_D08.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_9_D08_A029 3', mRNA sequence
Length = 732
Score = 324 bits (702), Expect = 5e-088
Identities = 127/210 (60%), Positives = 163/210 (77%)
Frame = +1 / +3
Query: 121 YAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLVSGRCVRLSKTDRLLMCWWAFT 300
Y P +L LPG+VPL L Q +I+ Y ASV V +W +SGRC ++S DR+LMCWWAFT
Sbjct: 3 YYPEDLQLPGYVPLFLPQSQIVGVYGIASVLVVTLIWFISGRCSKISSIDRILMCWWAFT 182
Query: 301 GLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSRYVARDTATVTVEGITAVLEGP 480
GLTH+++EG FVF+P+F+K E+P + EVWKEYSKGDSRY ARD+A VTVEGITAV+EGP
Sbjct: 183 GLTHLVLEGYFVFSPNFYKLESPFYLAEVWKEYSKGDSRYAARDSAVVTVEGITAVIEGP 362
Query: 481 ASLLAVYAIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFIGAN 660
A LLAVYAIA+RK +++ LQ A+ LGQLYG +VYF+TA+L+G NF G +Y+W+YF+ AN
Sbjct: 363 ACLLAVYAIAARKPYNYTLQLAISLGQLYGDIVYFVTAFLEGDNFSAGRYYYWSYFVLAN 542
Query: 661 SFWIWIPMLIAIRSWKKTCAAFQAEKVKKT 750
SFW+ IP +IA+R WKK AF K K +
Sbjct: 543 SFWLVIPAIIAVRCWKKISHAFLTAKPKNS 632
Score = 146 bits (314), Expect(2) = 3e-044
Identities = 74/122 (60%), Positives = 82/122 (67%)
Frame = -2 / -3
Query: 749 VFFTFSA*NAAQVFFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*TRH 570
+FF F+ A +FFQ L A+ GI QKLFA K Q * P +KL PSK AV K T
Sbjct: 631 LFFGFAVKKA*LIFFQHLTAIIAGITNQKLFANTK*LQ**YRPAEKLSPSKNAVTKYTMS 452
Query: 569 P*SWPRQTANWRMWLKDFLDAIA*TASSDAGPSNTAVIPSTVTVAVSLATYLESPLLYSF 390
P*SWP++ ANW + L FL AIA TA AGPS TAVIPSTVT A SLA YLESPLLYSF
Sbjct: 451 P*SWPKEIANWSV*LYGFLAAIAYTARRQAGPSITAVIPSTVTTAESLAAYLESPLLYSF 272
Query: 389 QT 384
QT
Sbjct: 271 QT 266
Score = 52.4 bits (108), Expect(2) = 3e-044
Identities = 25/46 (54%), Positives = 30/46 (65%)
Frame = -2 / -3
Query: 338 KTKGPSIIMWVNPVNAHQHMSRRSVLDNLTHLPETSQTARKTKTEA 201
KTK PS VNPVNAHQH+ S+ + L HLPE +Q T+TEA
Sbjct: 220 KTKYPSRTR*VNPVNAHQHIRILSMDEILEHLPEMNQMRVTTRTEA 83
>gb|DN445913.1|DN445913 EST941712 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIA443 5' end, mRNA sequence
Length = 851
Score = 324 bits (701), Expect = 7e-088
Identities = 124/198 (62%), Positives = 159/198 (80%)
Frame = +1 / +3
Query: 112 GHPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLVSGRCVRLSKTDRLLMCWW 291
GHPY P +L LPG+VPL L Q +I+ Y ASV V +W +SGRC ++S DR+LMCWW
Sbjct: 258 GHPYYPEDLQLPGYVPLFLPQSQIVGVYGIASVLVVTLIWFISGRCSKISSIDRILMCWW 437
Query: 292 AFTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSRYVARDTATVTVEGITAVL 471
AFTGLTH+++EG FVF+P+F+K E+P + EVWKEYSKGDSRY ARD+A VTVEGITAV+
Sbjct: 438 AFTGLTHLVLEGYFVFSPNFYKLESPFYLAEVWKEYSKGDSRYAARDSAVVTVEGITAVI 617
Query: 472 EGPASLLAVYAIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFI 651
EGPA LLAVYAIA+RK +++ LQ A+ LGQLYG +VYF+TA+L+G NF G +Y+W+YF+
Sbjct: 618 EGPACLLAVYAIAARKPYNYTLQLAISLGQLYGDIVYFVTAFLEGDNFSAGRYYYWSYFV 797
Query: 652 GANSFWIWIPMLIAIRSW 705
ANSFW+ IP +IA+R W
Sbjct: 798 LANSFWLVIPAIIAVRCW 851
Score = 134 bits (287), Expect(2) = 2e-040
Identities = 68/107 (63%), Positives = 73/107 (68%)
Frame = -2 / -2
Query: 704 QDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*TRHP*SWPRQTANWRMWL 525
Q L A+ GI QKLFA K Q * P +KL PSK AV K T P*SWP++ ANW + L
Sbjct: 850 QHLTAIIAGITNQKLFANTK*LQ**YRPAEKLSPSKNAVTKYTMSP*SWPKEIANWSV*L 671
Query: 524 KDFLDAIA*TASSDAGPSNTAVIPSTVTVAVSLATYLESPLLYSFQT 384
FL AIA TA AGPS TAVIPSTVT A SLA YLESPLLYSFQT
Sbjct: 670 YGFLAAIAYTARRQAGPSITAVIPSTVTTAESLAAYLESPLLYSFQT 530
Score = 52.4 bits (108), Expect(2) = 2e-040
Identities = 25/46 (54%), Positives = 30/46 (65%)
Frame = -2 / -2
Query: 338 KTKGPSIIMWVNPVNAHQHMSRRSVLDNLTHLPETSQTARKTKTEA 201
KTK PS VNPVNAHQH+ S+ + L HLPE +Q T+TEA
Sbjct: 484 KTKYPSRTR*VNPVNAHQHIRILSMDEILEHLPEMNQMRVTTRTEA 347
>gb|DR178147.1|DR178147 RTMNUT1_9_D08.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_9_D08_A029 5', mRNA sequence
Length = 645
Score = 308 bits (666), Expect = 5e-083
Identities = 118/187 (63%), Positives = 151/187 (80%)
Frame = +1 / +2
Query: 112 GHPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLVSGRCVRLSKTDRLLMCWW 291
GHPY P +L LPG+VPL L Q +I+ Y ASV V +W +SGRC ++S DR+LMCWW
Sbjct: 83 GHPYYPEDLQLPGYVPLFLPQSQIVGVYGIASVLVVTLIWFISGRCSKISSIDRILMCWW 262
Query: 292 AFTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSRYVARDTATVTVEGITAVL 471
AFTGLTH+++EG FVF+P+F+K E+P + EVWKEYSKGDSRY ARD+A VTVEGITAV+
Sbjct: 263 AFTGLTHLVLEGYFVFSPNFYKLESPFYLAEVWKEYSKGDSRYAARDSAVVTVEGITAVI 442
Query: 472 EGPASLLAVYAIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFI 651
EGPA LLAVYAIA+RK +++ LQ A+ LGQLYG +VYF+TA+L+G NF G +Y+W+YF+
Sbjct: 443 EGPACLLAVYAIAARKPYNYTLQLAISLGQLYGDIVYFVTAFLEGDNFSAGRYYYWSYFV 622
Query: 652 GANSFWI 672
ANSFW+
Sbjct: 623 LANSFWL 643
Score = 127 bits (272), Expect(2) = 2e-038
Identities = 63/95 (66%), Positives = 67/95 (70%)
Frame = -2 / -1
Query: 668 QKLFAPMKYAQK*NGPTQKLKPSKYAVMK*TRHP*SWPRQTANWRMWLKDFLDAIA*TAS 489
QKLFA K Q * P +KL PSK AV K T P*SWP++ ANW + L FL AIA TA
Sbjct: 639 QKLFANTK*LQ**YRPAEKLSPSKNAVTKYTMSP*SWPKEIANWSV*LYGFLAAIAYTAR 460
Query: 488 SDAGPSNTAVIPSTVTVAVSLATYLESPLLYSFQT 384
AGPS TAVIPSTVT A SLA YLESPLLYSFQT
Sbjct: 459 RQAGPSITAVIPSTVTTAESLAAYLESPLLYSFQT 355
Score = 52.4 bits (108), Expect(2) = 2e-038
Identities = 25/46 (54%), Positives = 30/46 (65%)
Frame = -2 / -1
Query: 338 KTKGPSIIMWVNPVNAHQHMSRRSVLDNLTHLPETSQTARKTKTEA 201
KTK PS VNPVNAHQH+ S+ + L HLPE +Q T+TEA
Sbjct: 309 KTKYPSRTR*VNPVNAHQHIRILSMDEILEHLPEMNQMRVTTRTEA 172
>gb|DR180307.1|DR180307 RTMNUT1_27_F08.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_27_F08_A029 5', mRNA sequence
Length = 660
Score = 294 bits (637), Expect = 5e-079
Identities = 113/180 (62%), Positives = 145/180 (80%)
Frame = +1 / +3
Query: 112 GHPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLVSGRCVRLSKTDRLLMCWW 291
GHPY P +L LPG+VPL L Q +I+ Y ASV V +W +SGRC ++S DR+LMCWW
Sbjct: 117 GHPYYPEDLQLPGYVPLFLPQSQIVGVYGIASVLVVTLIWFISGRCSKISSIDRILMCWW 296
Query: 292 AFTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSRYVARDTATVTVEGITAVL 471
AFTGLTH+++EG FVF+P+F+K E+P + EVWKEYSKGDSRY ARD+A VTVEGITAV+
Sbjct: 297 AFTGLTHLVLEGYFVFSPNFYKLESPFYLAEVWKEYSKGDSRYAARDSAVVTVEGITAVI 476
Query: 472 EGPASLLAVYAIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFI 651
EGPA LLAVYAIA+RK +++ LQ A+ LGQLYG +VYF+TA+L+G NF G +Y+W+YF+
Sbjct: 477 EGPACLLAVYAIAARKPYNYTLQLAISLGQLYGDIVYFVTAFLEGDNFSAGRYYYWSYFV 656
Score = 118 bits (253), Expect(2) = 8e-036
Identities = 55/80 (68%), Positives = 59/80 (73%)
Frame = -2 / -3
Query: 623 PTQKLKPSKYAVMK*TRHP*SWPRQTANWRMWLKDFLDAIA*TASSDAGPSNTAVIPSTV 444
P +KL PSK AV K T P*SWP++ ANW + L FL AIA TA AGPS TAVIPSTV
Sbjct: 628 PAEKLSPSKNAVTKYTMSP*SWPKEIANWSV*LYGFLAAIAYTARRQAGPSITAVIPSTV 449
Query: 443 TVAVSLATYLESPLLYSFQT 384
T A SLA YLESPLLYSFQT
Sbjct: 448 TTAESLAAYLESPLLYSFQT 389
Score = 52.4 bits (108), Expect(2) = 8e-036
Identities = 25/46 (54%), Positives = 30/46 (65%)
Frame = -2 / -3
Query: 338 KTKGPSIIMWVNPVNAHQHMSRRSVLDNLTHLPETSQTARKTKTEA 201
KTK PS VNPVNAHQH+ S+ + L HLPE +Q T+TEA
Sbjct: 343 KTKYPSRTR*VNPVNAHQHIRILSMDEILEHLPEMNQMRVTTRTEA 206
>gb|CF385050.1|CF385050 RTDR1_1_A07.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_1_A07_A015 5', mRNA
sequence
Length = 770
Score = 293 bits (635), Expect = 9e-079
Identities = 113/179 (63%), Positives = 144/179 (80%)
Frame = +1 / +3
Query: 112 GHPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLVSGRCVRLSKTDRLLMCWW 291
GHPY P +L LPG+VPL L Q +I+ Y ASV V +W +SGRC ++S DR+LMCWW
Sbjct: 234 GHPYYPEDLQLPGYVPLFLPQSQIVGVYEIASVLVVTLIWFISGRCSKISSIDRILMCWW 413
Query: 292 AFTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSRYVARDTATVTVEGITAVL 471
AFTGLTH+++EG FVF+P+F+K E+P + EVWKEYSKGDSRY ARD+A VTVEGITAV+
Sbjct: 414 AFTGLTHLVLEGYFVFSPNFYKLESPFYLAEVWKEYSKGDSRYAARDSAVVTVEGITAVI 593
Query: 472 EGPASLLAVYAIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYF 648
EGPA LLAVYAIA+RK +++ LQ A+ LGQLYG +VYF+TA+L+G NF G +Y+W+YF
Sbjct: 594 EGPACLLAVYAIAARKPYNYTLQLAISLGQLYGDIVYFVTAFLEGDNFSAGRYYYWSYF 770
Score = 118 bits (253), Expect(2) = 8e-036
Identities = 55/80 (68%), Positives = 59/80 (73%)
Frame = -2 / -2
Query: 623 PTQKLKPSKYAVMK*TRHP*SWPRQTANWRMWLKDFLDAIA*TASSDAGPSNTAVIPSTV 444
P +KL PSK AV K T P*SWP++ ANW + L FL AIA TA AGPS TAVIPSTV
Sbjct: 745 PAEKLSPSKNAVTKYTMSP*SWPKEIANWSV*LYGFLAAIAYTARRQAGPSITAVIPSTV 566
Query: 443 TVAVSLATYLESPLLYSFQT 384
T A SLA YLESPLLYSFQT
Sbjct: 565 TTAESLAAYLESPLLYSFQT 506
Score = 52.4 bits (108), Expect(2) = 8e-036
Identities = 25/46 (54%), Positives = 30/46 (65%)
Frame = -2 / -2
Query: 338 KTKGPSIIMWVNPVNAHQHMSRRSVLDNLTHLPETSQTARKTKTEA 201
KTK PS VNPVNAHQH+ S+ + L HLPE +Q T+TEA
Sbjct: 460 KTKYPSRTR*VNPVNAHQHIRILSMDEILEHLPEMNQMRVTTRTEA 323
>gb|CX651523.1|CX651523 COLD1_53_A12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_53_A12_A029 3', mRNA sequence
Length = 816
Score = 293 bits (634), Expect = 1e-078
Identities = 111/179 (62%), Positives = 143/179 (79%)
Frame = +1 / +1
Query: 214 VFLAVWLVSGRCVRLSKTDRLLMCWWAFTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWK 393
V +W +SGRC ++S DR+LMCWWAFTGLTH+++EG FVF+P+F+K E+P + EVWK
Sbjct: 1 VVTLIWFISGRCSKISSIDRILMCWWAFTGLTHLVLEGYFVFSPNFYKLESPFYLAEVWK 180
Query: 394 EYSKGDSRYVARDTATVTVEGITAVLEGPASLLAVYAIASRKSFSHILQFAVCLGQLYGC 573
EYSKGDSRY ARD+A VTVEGITAV+EGPA LLAVYAIA+RK +++ LQ A+ LGQLYG
Sbjct: 181 EYSKGDSRYAARDSAVVTVEGITAVIEGPACLLAVYAIAARKPYNYTLQLAISLGQLYGD 360
Query: 574 LVYFITAYLDGFNFWVGPFYFWAYFIGANSFWIWIPMLIAIRSWKKTCAAFQAEKVKKT 750
+VYF+TA+L+G NF G +Y+W+YF+ ANSFW+ IP +IA+R WKK AF K K +
Sbjct: 361 IVYFVTAFLEGDNFSAGRYYYWSYFVLANSFWLVIPAIIAVRCWKKISHAFLTAKPKNS 537
Score = 146 bits (314), Expect(2) = 4e-042
Identities = 74/122 (60%), Positives = 82/122 (67%)
Frame = -2 / -2
Query: 749 VFFTFSA*NAAQVFFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*TRH 570
+FF F+ A +FFQ L A+ GI QKLFA K Q * P +KL PSK AV K T
Sbjct: 536 LFFGFAVKKA*LIFFQHLTAIIAGITNQKLFANTK*LQ**YRPAEKLSPSKNAVTKYTMS 357
Query: 569 P*SWPRQTANWRMWLKDFLDAIA*TASSDAGPSNTAVIPSTVTVAVSLATYLESPLLYSF 390
P*SWP++ ANW + L FL AIA TA AGPS TAVIPSTVT A SLA YLESPLLYSF
Sbjct: 356 P*SWPKEIANWSV*LYGFLAAIAYTARRQAGPSITAVIPSTVTTAESLAAYLESPLLYSF 177
Query: 389 QT 384
QT
Sbjct: 176 QT 171
Score = 45.5 bits (93), Expect(2) = 4e-042
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = -2 / -2
Query: 338 KTKGPSIIMWVNPVNAHQHMSRRSVLDNLTHLPETSQ 228
KTK PS VNPVNAHQH+ S+ + L HLPE +Q
Sbjct: 125 KTKYPSRTR*VNPVNAHQHIRILSMDEILEHLPEMNQ 15
>gb|DT638511.1|DT638511 EST1153442 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHG08 3' end, mRNA sequence
Length = 817
Score = 178 bits (384), Expect(2) = 8e-076
Identities = 67/113 (59%), Positives = 86/113 (76%)
Frame = +1 / +1
Query: 112 GHPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLVSGRCVRLSKTDRLLMCWW 291
GHPY P +L LPG+VPL L Q +I+ Y ASV V +W +SGRC ++S DR+LMCWW
Sbjct: 91 GHPYYPEDLQLPGYVPLFLPQSQIVGVYGIASVLVVTLIWFISGRCSKISSIDRILMCWW 270
Query: 292 AFTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSRYVARDTATVTV 450
AFTGLTH+++EG FVF+P+F+K E+P + EVWKEYSKGDSRY ARD+A +
Sbjct: 271 AFTGLTHLVLEGYFVFSPNFYKLESPFYLAEVWKEYSKGDSRYAARDSAVYAI 429
Score = 126 bits (269), Expect(2) = 8e-076
Identities = 48/86 (55%), Positives = 65/86 (75%)
Frame = +1 / +1
Query: 493 AVYAIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFIGANSFWI 672
AVYAIA+RK +++ LQ A+ LGQLYG +VYF+TA+L+G NF G +Y+W+YF+ ANSFW+
Sbjct: 415 AVYAIAARKPYNYTLQLAISLGQLYGDIVYFVTAFLEGDNFSAGRYYYWSYFVLANSFWL 594
Query: 673 WIPMLIAIRSWKKTCAAFQAEKVKKT 750
IP +IA+R WKK AF K K +
Sbjct: 595 VIPAIIAVRCWKKISHAFLTAKPKNS 672
Score = 88.1 bits (186), Expect(2) = 1e-026
Identities = 50/105 (47%), Positives = 61/105 (58%)
Frame = -2 / -3
Query: 749 VFFTFSA*NAAQVFFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*TRH 570
+FF F+ A +FFQ L A+ GI QKLFA K Q * P +KL PSK AV K T
Sbjct: 671 LFFGFAVKKA*LIFFQHLTAIIAGITNQKLFANTK*LQ**YRPAEKLSPSKNAVTKYTMS 492
Query: 569 P*SWPRQTANWRMWLKDFLDAIA*TASSDAGPSNTAVIPSTVTVA 435
P*SWP++ ANW + L FL AIA TA S A + ++ S T A
Sbjct: 491 P*SWPKEIANWSV*LYGFLAAIAYTAESLAAYLESPLLYSFQTSA 357
Score = 52.4 bits (108), Expect(2) = 1e-026
Identities = 25/46 (54%), Positives = 30/46 (65%)
Frame = -2 / -3
Query: 338 KTKGPSIIMWVNPVNAHQHMSRRSVLDNLTHLPETSQTARKTKTEA 201
KTK PS VNPVNAHQH+ S+ + L HLPE +Q T+TEA
Sbjct: 317 KTKYPSRTR*VNPVNAHQHIRILSMDEILEHLPEMNQMRVTTRTEA 180
>gb|DR694454.1|DR694454 EST1084546 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEC66 3' end, mRNA sequence
Length = 804
Score = 178 bits (384), Expect(2) = 8e-076
Identities = 67/113 (59%), Positives = 86/113 (76%)
Frame = +1 / +2
Query: 112 GHPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLVSGRCVRLSKTDRLLMCWW 291
GHPY P +L LPG+VPL L Q +I+ Y ASV V +W +SGRC ++S DR+LMCWW
Sbjct: 83 GHPYYPEDLQLPGYVPLFLPQSQIVGVYGIASVLVVTLIWFISGRCSKISSIDRILMCWW 262
Query: 292 AFTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSRYVARDTATVTV 450
AFTGLTH+++EG FVF+P+F+K E+P + EVWKEYSKGDSRY ARD+A +
Sbjct: 263 AFTGLTHLVLEGYFVFSPNFYKLESPFYLAEVWKEYSKGDSRYAARDSAVYAI 421
Score = 126 bits (269), Expect(2) = 8e-076
Identities = 48/86 (55%), Positives = 65/86 (75%)
Frame = +1 / +2
Query: 493 AVYAIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFIGANSFWI 672
AVYAIA+RK +++ LQ A+ LGQLYG +VYF+TA+L+G NF G +Y+W+YF+ ANSFW+
Sbjct: 407 AVYAIAARKPYNYTLQLAISLGQLYGDIVYFVTAFLEGDNFSAGRYYYWSYFVLANSFWL 586
Query: 673 WIPMLIAIRSWKKTCAAFQAEKVKKT 750
IP +IA+R WKK AF K K +
Sbjct: 587 VIPAIIAVRCWKKISHAFLTAKPKNS 664
Score = 88.1 bits (186), Expect(2) = 1e-026
Identities = 50/105 (47%), Positives = 61/105 (58%)
Frame = -2 / -1
Query: 749 VFFTFSA*NAAQVFFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*TRH 570
+FF F+ A +FFQ L A+ GI QKLFA K Q * P +KL PSK AV K T
Sbjct: 663 LFFGFAVKKA*LIFFQHLTAIIAGITNQKLFANTK*LQ**YRPAEKLSPSKNAVTKYTMS 484
Query: 569 P*SWPRQTANWRMWLKDFLDAIA*TASSDAGPSNTAVIPSTVTVA 435
P*SWP++ ANW + L FL AIA TA S A + ++ S T A
Sbjct: 483 P*SWPKEIANWSV*LYGFLAAIAYTAESLAAYLESPLLYSFQTSA 349
Score = 52.4 bits (108), Expect(2) = 1e-026
Identities = 25/46 (54%), Positives = 30/46 (65%)
Frame = -2 / -1
Query: 338 KTKGPSIIMWVNPVNAHQHMSRRSVLDNLTHLPETSQTARKTKTEA 201
KTK PS VNPVNAHQH+ S+ + L HLPE +Q T+TEA
Sbjct: 309 KTKYPSRTR*VNPVNAHQHIRILSMDEILEHLPEMNQMRVTTRTEA 172
>gb|BG040217.1|BG040217 NXSI_109_H04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_109_H04 5' similar to Arabidopsis thaliana
sequence At1g20050 C-8,7 sterol isomerase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 545
Score = 275 bits (594), Expect = 4e-073
Identities = 107/179 (59%), Positives = 137/179 (76%)
Frame = +1 / +2
Query: 214 VFLAVWLVSGRCVRLSKTDRLLMCWWAFTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWK 393
V +W +SGRC ++S DR+LMCWWAFTGLTH+++EG FVF+P+F+K E+P + EVWK
Sbjct: 5 VVTLIWFISGRCSKISSIDRILMCWWAFTGLTHLVLEGYFVFSPNFYKLESPFYLAEVWK 184
Query: 394 EYSKGDSRYVARDTATVTVEGITAVLEGPASLLAVYAIASRKSFSHILQFAVCLGQLYGC 573
EYSKGDSRY ARD+A VTVEGITAV+EGPA LLAVYAIA+RK +++ LQ A+ LGQLYG
Sbjct: 185 EYSKGDSRYAARDSAVVTVEGITAVIEGPACLLAVYAIAARKPYNYTLQLAISLGQLYGD 364
Query: 574 LVYFITAYLDGFNFWVGPFYFWAYFIGANSFWIWIPMLIAIRSWKKTCAAFQAEKVKKT 750
+VYF+TA+L NF G +Y+W+YF+ ANSFW+ IP +IA K AF K K +
Sbjct: 365 IVYFVTAFLXXDNFSAGRYYYWSYFVLANSFWLVIPAIIAXXCXXKIXHAFLTXKPKNS 541
Score = 137 bits (293), Expect(2) = 2e-039
Identities = 70/122 (57%), Positives = 77/122 (63%)
Frame = -2 / -3
Query: 749 VFFTFSA*NAAQVFFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*TRH 570
+FF F A +F Q A+ GI QKLFA K Q * P +KL K AV K T
Sbjct: 540 LFFGFXVKKAXXIFXQHXXAIIAGITNQKLFANTK*LQ**YRPAEKLSXXKNAVTKYTMS 361
Query: 569 P*SWPRQTANWRMWLKDFLDAIA*TASSDAGPSNTAVIPSTVTVAVSLATYLESPLLYSF 390
P*SWP++ ANW + L FL AIA TA AGPS TAVIPSTVT A SLA YLESPLLYSF
Sbjct: 360 P*SWPKEIANWSV*LYGFLAAIAYTARRQAGPSITAVIPSTVTTAESLAAYLESPLLYSF 181
Query: 389 QT 384
QT
Sbjct: 180 QT 175
Score = 46.0 bits (94), Expect(2) = 2e-039
Identities = 22/43 (51%), Positives = 27/43 (62%)
Frame = -2 / -3
Query: 338 KTKGPSIIMWVNPVNAHQHMSRRSVLDNLTHLPETSQTARKTK 210
KTK PS VNPVNAHQH+ S+ + L HLPE +Q T+
Sbjct: 129 KTKYPSRTR*VNPVNAHQHIRILSMDEILEHLPEMNQMRVTTR 1
>gb|DR692610.1|DR692610 EST1082698 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADO20 3' end, mRNA sequence
Length = 734
Score = 272 bits (588), Expect = 3e-072
Identities = 108/173 (62%), Positives = 137/173 (79%)
Frame = +1 / +1
Query: 112 GHPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLVSGRCVRLSKTDRLLMCWW 291
GHPY P +L LPG+VPL L Q +I+ Y ASV V +W +SGR ++S DR+LMCWW
Sbjct: 193 GHPYYPEDLQLPGYVPLFLPQSQIVGVYGIASVLVVTLIWFISGRYSKISSIDRILMCWW 372
Query: 292 AFTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSRYVARDTATVTVEGITAVL 471
AFTGLTH+++EG FVF+P+F+K E+P + EVWKEYSKGDSRY ARD+A VTVEGITAV+
Sbjct: 373 AFTGLTHLVLEGYFVFSPNFYKLESPFYLAEVWKEYSKGDSRYAARDSAVVTVEGITAVI 552
Query: 472 EGPASLLAVYAIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPF 630
EGPA LLAVYAIA+RK +++ LQ A+ LGQLYG +VYF+TA+L+G NF G +
Sbjct: 553 EGPACLLAVYAIAARKPYNYTLQLAISLGQLYGDIVYFVTAFLEGDNFSAGRY 711
Score = 118 bits (253), Expect(2) = 5e-035
Identities = 55/80 (68%), Positives = 59/80 (73%)
Frame = -2 / -1
Query: 623 PTQKLKPSKYAVMK*TRHP*SWPRQTANWRMWLKDFLDAIA*TASSDAGPSNTAVIPSTV 444
P +KL PSK AV K T P*SWP++ ANW + L FL AIA TA AGPS TAVIPSTV
Sbjct: 704 PAEKLSPSKNAVTKYTMSP*SWPKEIANWSV*LYGFLAAIAYTARRQAGPSITAVIPSTV 525
Query: 443 TVAVSLATYLESPLLYSFQT 384
T A SLA YLESPLLYSFQT
Sbjct: 524 TTAESLAAYLESPLLYSFQT 465
Score = 49.6 bits (102), Expect(2) = 5e-035
Identities = 24/46 (52%), Positives = 30/46 (65%)
Frame = -2 / -1
Query: 338 KTKGPSIIMWVNPVNAHQHMSRRSVLDNLTHLPETSQTARKTKTEA 201
KTK PS VNPVNAHQH+ S+ + L +LPE +Q T+TEA
Sbjct: 419 KTKYPSRTR*VNPVNAHQHIRILSMDEILEYLPEMNQMRVTTRTEA 282
>gb|CX712206.1|CX712206 RTPQ1_1_B12.b2_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_1_B12_A032 3', mRNA sequence
Length = 762
Score = 266 bits (576), Expect = 1e-070
Identities = 102/159 (64%), Positives = 130/159 (81%)
Frame = +1 / +1
Query: 274 LLMCWWAFTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSRYVARDTATVTVE 453
+LMCWWAFTGLTH+++EG FVF+P+F+K E+P + EVWKEYSKGDSRY ARD+A VTVE
Sbjct: 1 ILMCWWAFTGLTHLVLEGYFVFSPNFYKLESPFYLAEVWKEYSKGDSRYAARDSAVVTVE 180
Query: 454 GITAVLEGPASLLAVYAIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFY 633
GITAV+EGPA LLAVYAIA+RK +++ LQ A+ LGQLYG +VYF+TA+L+G NF G +Y
Sbjct: 181 GITAVIEGPACLLAVYAIAARKPYNYTLQLAISLGQLYGDIVYFVTAFLEGDNFSAGRYY 360
Query: 634 FWAYFIGANSFWIWIPMLIAIRSWKKTCAAFQAEKVKKT 750
+W+YF+ ANSFW+ IP +IA+R WKK AF K K +
Sbjct: 361 YWSYFVLANSFWLVIPAIIAVRCWKKISHAFLTAKPKNS 477
Score = 146 bits (314), Expect(2) = 1e-038
Identities = 74/122 (60%), Positives = 82/122 (67%)
Frame = -2 / -2
Query: 749 VFFTFSA*NAAQVFFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*TRH 570
+FF F+ A +FFQ L A+ GI QKLFA K Q * P +KL PSK AV K T
Sbjct: 476 LFFGFAVKKA*LIFFQHLTAIIAGITNQKLFANTK*LQ**YRPAEKLSPSKNAVTKYTMS 297
Query: 569 P*SWPRQTANWRMWLKDFLDAIA*TASSDAGPSNTAVIPSTVTVAVSLATYLESPLLYSF 390
P*SWP++ ANW + L FL AIA TA AGPS TAVIPSTVT A SLA YLESPLLYSF
Sbjct: 296 P*SWPKEIANWSV*LYGFLAAIAYTARRQAGPSITAVIPSTVTTAESLAAYLESPLLYSF 117
Query: 389 QT 384
QT
Sbjct: 116 QT 111
Score = 33.6 bits (67), Expect(2) = 1e-038
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = -2 / -2
Query: 338 KTKGPSIIMWVNPVNAHQHM 279
KTK PS VNPVNAHQH+
Sbjct: 65 KTKYPSRTR*VNPVNAHQHI 6
>gb|CF474483.1|CF474483 RTWW2_9_E02.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_9_E02_A021 3', mRNA sequence
Length = 643
Score = 221 bits (477), Expect = 6e-057
Identities = 87/139 (62%), Positives = 111/139 (79%)
Frame = +1 / +1
Query: 334 VFTPDFFKKENPNFFDEVWKEYSKGDSRYVARDTATVTVEGITAVLEGPASLLAVYAIAS 513
VF+P+F+K E+P + EVWKEYSKGDSRY ARD+A VTVEGITAV+EGPA LLAVYAIA+
Sbjct: 1 VFSPNFYKLESPFYLAEVWKEYSKGDSRYAARDSAVVTVEGITAVIEGPACLLAVYAIAA 180
Query: 514 RKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFIGANSFWIWIPMLIA 693
RK +++ LQ A+ LGQLYG +VYF+TA+L+G NF G +Y+W+YF+ ANSFW+ IP +IA
Sbjct: 181 RKPYNYTLQLAISLGQLYGDIVYFVTAFLEGDNFSAGRYYYWSYFVLANSFWLVIPAIIA 360
Query: 694 IRSWKKTCAAFQAEKVKKT 750
+R WKK AF K K +
Sbjct: 361 VRCWKKISHAFLTAKPKNS 417
Score = 146 bits (314), Expect = 2e-034
Identities = 74/122 (60%), Positives = 82/122 (67%)
Frame = -2 / -3
Query: 749 VFFTFSA*NAAQVFFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*TRH 570
+FF F+ A +FFQ L A+ GI QKLFA K Q * P +KL PSK AV K T
Sbjct: 416 LFFGFAVKKA*LIFFQHLTAIIAGITNQKLFANTK*LQ**YRPAEKLSPSKNAVTKYTMS 237
Query: 569 P*SWPRQTANWRMWLKDFLDAIA*TASSDAGPSNTAVIPSTVTVAVSLATYLESPLLYSF 390
P*SWP++ ANW + L FL AIA TA AGPS TAVIPSTVT A SLA YLESPLLYSF
Sbjct: 236 P*SWPKEIANWSV*LYGFLAAIAYTARRQAGPSITAVIPSTVTTAESLAAYLESPLLYSF 57
Query: 389 QT 384
QT
Sbjct: 56 QT 51
>gb|AW784079.1|AW784079 NXNV_117_E06_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_117_E06 5' similar to Arabidopsis thaliana
sequence At1g20050 C-8,7 sterol isomerase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 622
Score = 188 bits (405), Expect = 5e-047
Identities = 75/118 (63%), Positives = 94/118 (79%)
Frame = +1 / +3
Query: 397 YSKGDSRYVARDTATVTVEGITAVLEGPASLLAVYAIASRKSFSHILQFAVCLGQLYGCL 576
YSKGDSRY ARD+A VTVEGITAV+EGPA LLAVYAIA+RK +++ LQ A+ LGQLYG +
Sbjct: 3 YSKGDSRYAARDSAVVTVEGITAVIEGPACLLAVYAIAARKPYNYTLQLAISLGQLYGDI 182
Query: 577 VYFITAYLDGFNFWVGPFYFWAYFIGANSFWIWIPMLIAIRSWKKTCAAFQAEKVKKT 750
VYF+TA+L+G NF G +Y+W+YF+ ANSFW+ IP +IA+R WKK AF K K +
Sbjct: 183 VYFVTAFLEGDNFSAGRYYYWSYFVLANSFWLVIPAIIAVRCWKKISHAFLTAKPKNS 356
Score = 137 bits (294), Expect = 1e-031
Identities = 70/118 (59%), Positives = 78/118 (66%)
Frame = -2 / -1
Query: 749 VFFTFSA*NAAQVFFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*TRH 570
+FF F+ A +FFQ L A+ GI QKLFA K Q * P +KL PSK AV K T
Sbjct: 355 LFFGFAVKKA*LIFFQHLTAIIAGITNQKLFANTK*LQ**YRPAEKLSPSKNAVTKYTMS 176
Query: 569 P*SWPRQTANWRMWLKDFLDAIA*TASSDAGPSNTAVIPSTVTVAVSLATYLESPLLY 396
P*SWP++ ANW + L FL AIA TA AGPS TAVIPSTVT A SLA YLESPLLY
Sbjct: 175 P*SWPKEIANWSV*LYGFLAAIAYTARRQAGPSITAVIPSTVTTAESLAAYLESPLLY 2
>gb|AW289839.1|AW289839 NXNV006C04F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006C04 5', mRNA sequence
Length = 388
Score = 177 bits (381), Expect = 1e-043
Identities = 70/120 (58%), Positives = 88/120 (73%)
Frame = +1 / +1
Query: 112 GHPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLVSGRCVRLSKTDRLLMCWW 291
GHPY P +L LPG+VPL L Q +I+ Y ASV +W +SGRC ++S DR+LMCWW
Sbjct: 28 GHPYYPEDLQLPGYVPLFLPQSQIVGVYGIASVLGVTLIWFISGRCSKISSIDRILMCWW 207
Query: 292 AFTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSRYVARDTATVTVEGITAVL 471
AFTGLTH+++EG FVF+P+F+K E+P + EYSKGDSRY ARD A VTV GITAV+
Sbjct: 208 AFTGLTHLVLEGYFVFSPNFYKLESPFYLAXXXXEYSKGDSRYAARDXAXVTVXGITAVI 387
>gb|CD028376.1|CD028376 NXNV006C04 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006C04 5' similar to Arabidopsis thaliana sequence
At1g20050 C-8,7 sterol isomerase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 388
Score = 177 bits (381), Expect = 1e-043
Identities = 70/120 (58%), Positives = 88/120 (73%)
Frame = +1 / +1
Query: 112 GHPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLVSGRCVRLSKTDRLLMCWW 291
GHPY P +L LPG+VPL L Q +I+ Y ASV +W +SGRC ++S DR+LMCWW
Sbjct: 28 GHPYYPEDLQLPGYVPLFLPQSQIVGVYGIASVLGVTLIWFISGRCSKISSIDRILMCWW 207
Query: 292 AFTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSRYVARDTATVTVEGITAVL 471
AFTGLTH+++EG FVF+P+F+K E+P + EYSKGDSRY ARD A VTV GITAV+
Sbjct: 208 AFTGLTHLVLEGYFVFSPNFYKLESPFYLAXXXXEYSKGDSRYAARDXAXVTVXGITAVI 387
>gb|BX251284.1|BX251284 BX251284 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP047F12, mRNA sequence
Length = 616
Score = 165 bits (354), Expect = 5e-040
Identities = 65/106 (61%), Positives = 83/106 (78%)
Frame = +1 / +2
Query: 433 TATVTVEGITAVLEGPASLLAVYAIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFN 612
+A VTVEGITAV+EGPA LLAVYAIA+RK +++ LQ A+CLGQLYG +VYF+TA+L+G N
Sbjct: 2 SAVVTVEGITAVIEGPACLLAVYAIAARKPYNYTLQLAICLGQLYGDIVYFVTAFLEGDN 181
Query: 613 FWVGPFYFWAYFIGANSFWIWIPMLIAIRSWKKTCAAFQAEKVKKT 750
F G +Y+W YF+ ANSFW+ IP +IA+R WKK AF K K +
Sbjct: 182 FSAGRYYYWLYFVLANSFWLVIPSIIAVRCWKKISHAFLTAKPKNS 319
Score = 115 bits (245), Expect = 6e-025
Identities = 60/105 (57%), Positives = 68/105 (64%)
Frame = -2 / -2
Query: 749 VFFTFSA*NAAQVFFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*TRH 570
+FF F+ A +FFQ L A+ GI QKLFA K +Q * P +KL PSK AV K T
Sbjct: 318 LFFGFAVKKA*LIFFQHLTAIIEGITNQKLFANTK*SQ**YRPAEKLSPSKNAVTKYTMS 139
Query: 569 P*SWPRQTANWRMWLKDFLDAIA*TASSDAGPSNTAVIPSTVTVA 435
P*SWP+Q ANW + L FL AIA TA AGPS TAVIPSTVT A
Sbjct: 138 P*SWPKQIANWSV*LYGFLAAIAYTARRQAGPSITAVIPSTVTTA 4
>gb|CX651593.1|CX651593 COLD1_53_A12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_53_A12_A029 5', mRNA sequence
Length = 358
Score = 144 bits (308), Expect = 1e-033
Identities = 53/93 (56%), Positives = 70/93 (75%)
Frame = +1 / +3
Query: 112 GHPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLVSGRCVRLSKTDRLLMCWW 291
GHPY P +L LPG+VPL L Q +I+ Y ASV V +W +SGRC ++S DR+LMCWW
Sbjct: 78 GHPYYPEDLQLPGYVPLFLPQSQIVGVYGIASVLVVTLIWFISGRCSKISSIDRILMCWW 257
Query: 292 AFTGLTHIMIEGPFVFTPDFFKKENPNFFDEVW 390
AFTGLTH+++EG FVF+P+F+K E+P + EVW
Sbjct: 258 AFTGLTHLVLEGYFVFSPNFYKLESPFYLAEVW 356
>gb|DR014233.1|DR014233 HEAT1_24_F01.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_24_F01_A029 3', mRNA sequence
Length = 538
Score = 109 bits (232), Expect = 4e-023
Identities = 40/70 (57%), Positives = 52/70 (74%)
Frame = +1 / -1
Query: 112 GHPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLVSGRCVRLSKTDRLLMCWW 291
GHPY P +L LPG+VPL L Q +I+ Y ASV V +W +SGRC ++S DR+LMCWW
Sbjct: 211 GHPYYPEDLQLPGYVPLFLPQSQIVGVYGIASVLVVTLIWFISGRCSKISSIDRILMCWW 32
Query: 292 AFTGLTHIMI 321
AFTGLTH+++
Sbjct: 31 AFTGLTHLVL 2
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 432,392,922
Number of Sequences: 355925
Number of extensions: 5760037
Number of successful extensions: 38333
Number of sequences better than 1.0e-020: 26
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 13176183120
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)