TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AF332176.2.1
(912 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR387113.1|DR387113 RTHG1_19_C01.g1_A029 Roots plus adde... 92 1e-040
gb|CO158884.1|CO158884 FLD1_9_H09.g1_A029 Root flooded Pinu... 92 6e-035
gb|DR743783.1|DR743783 RTCU1_18_D05.b1_A029 Roots plus adde... 92 6e-035
gb|AW011133.1|AW011133 ST17B02 Pine TriplEx shoot tip libra... 89 1e-034
gb|DR385457.1|DR385457 RTHG1_8_F09.g1_A029 Roots plus added... 92 3e-033
gb|DR745426.1|DR745426 RTCU1_29_B05.g1_A029 Roots plus adde... 92 1e-031
gb|DR743865.1|DR743865 RTCU1_18_D05.g1_A029 Roots plus adde... 92 1e-027
gb|BE496299.1|BE496299 NXCI_022_D05_F NXCI (Nsf Xylem Compr... 92 3e-022
gb|CF391425.1|CF391425 RTDR3_1_E05.g1_A022 Loblolly pine ro... 56 3e-022
gb|CV035358.1|CV035358 RTNACL1_15_C01.g1_A029 Roots plus ad... 56 5e-022
gb|DR181270.1|DR181270 RTMNUT1_37_H02.g2_A029 Roots minus m... 56 8e-022
gb|CF479073.1|CF479073 RTWW3_21_F01.g1_A022 Well-watered lo... 55 9e-022
gb|DR011933.1|DR011933 HEAT1_8_G10.g1_A029 Root at 37 C for... 56 3e-021
gb|CF393979.1|CF393979 RTDS2_2_G11.g1_A021 Drought-stressed... 56 3e-021
gb|DR388929.1|DR388929 RTHG1_31_H05.b1_A029 Roots plus adde... 56 3e-021
gb|CF398579.1|CF398579 RTDS3_15_F12.g1_A022 Drought-stresse... 56 3e-021
gb|DR745139.1|DR745139 RTCU1_27_G04.b1_A029 Roots plus adde... 55 4e-021
gb|CF397256.1|CF397256 RTDS3_2_C11.g1_A022 Drought-stressed... 55 5e-021
gb|DR057131.1|DR057131 RTNIT1_2_G01.g1_A029 Roots minus nit... 55 5e-021
gb|CF471750.1|CF471750 RTDS1_6_B12.g1_A015 Drought-stressed... 55 5e-021
gb|CO200013.1|CO200013 GEO2_4_H10.g1_A032 Root gravitropism... 55 5e-021
gb|CF398819.1|CF398819 RTDS3_16_B06.g1_A022 Drought-stresse... 55 5e-021
gb|DR387045.1|DR387045 RTHG1_19_C01.b1_A029 Roots plus adde... 69 6e-021
>gb|DR387113.1|DR387113 RTHG1_19_C01.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_19_C01_A029 5', mRNA sequence
Length = 821
Score = 92.3 bits (195), Expect(5) = 1e-040
Identities = 33/78 (42%), Positives = 54/78 (69%)
Frame = +2 / +3
Query: 212 HFDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIERGSNPNYLAVLV 391
HFDLSGTAF MA + L + G++ + F+RVPC+YPG + F++ G++ + A+L+
Sbjct: 411 HFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYPGKNIAFNVNGGASDYWFAILI 590
Query: 392 EYENGDGDVVQVDLMESS 445
EYE+GDGD+ V + +++
Sbjct: 591 EYEDGDGDLRAVYIKQAN 644
Score = 63.4 bits (132), Expect(5) = 1e-040
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = +2 / +3
Query: 2 GRVGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIIT 181
G GG V PF + + G+ +FK G GCG+CYQ++C + CS A TV+IT
Sbjct: 189 GSDGGACGYGSLVKQSPFQSKIAAGSPALFKGGTGCGACYQVKCTENGLCSQTAVTVVIT 368
Query: 182 D 184
D
Sbjct: 369 D 371
Score = 36.8 bits (74), Expect(5) = 1e-040
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2 / +3
Query: 566 SGKTLVADQVIPADWQPDNVYSSIV 640
+G+TL A+ VIP +WQP Y S+V
Sbjct: 747 TGRTLTANNVIPQNWQPGATYRSLV 821
Score = 25.8 bits (50), Expect(5) = 1e-040
Identities = 6/19 (31%), Positives = 13/19 (68%)
Frame = +2 / +3
Query: 464 TGVWEPMRESWGSIWRMDT 520
+ W+ M E+WG+ W +++
Sbjct: 645 SNTWQGMEETWGANWCLNS 701
Score = 22.1 bits (42), Expect(5) = 1e-040
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2 / +3
Query: 527 PLQGPFSLRVTNES 568
PLQ PFS+R+ + S
Sbjct: 705 PLQAPFSIRLQSLS 746
>gb|CO158884.1|CO158884 FLD1_9_H09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_9_H09_A029 5', mRNA sequence
Length = 806
Score = 92.3 bits (195), Expect(4) = 6e-035
Identities = 33/78 (42%), Positives = 54/78 (69%)
Frame = +2 / +2
Query: 212 HFDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIERGSNPNYLAVLV 391
HFDLSGTAF MA + L + G++ + F+RVPC+YPG + F++ G++ + A+L+
Sbjct: 440 HFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYPGKNIAFNVNGGASDYWFAILI 619
Query: 392 EYENGDGDVVQVDLMESS 445
EYE+GDGD+ V + +++
Sbjct: 620 EYEDGDGDLRAVYIKQAN 673
Score = 63.4 bits (132), Expect(4) = 6e-035
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = +2 / +2
Query: 2 GRVGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIIT 181
G GG V PF + + G+ +FK G GCG+CYQ++C + CS A TV+IT
Sbjct: 218 GSDGGACGYGSLVKQSPFQSKIAAGSPALFKGGTGCGACYQVKCTENGLCSQTAVTVVIT 397
Query: 182 D 184
D
Sbjct: 398 D 400
Score = 25.8 bits (50), Expect(4) = 6e-035
Identities = 6/19 (31%), Positives = 13/19 (68%)
Frame = +2 / +2
Query: 464 TGVWEPMRESWGSIWRMDT 520
+ W+ M E+WG+ W +++
Sbjct: 674 SNTWQGMEETWGANWCLNS 730
Score = 22.1 bits (42), Expect(4) = 6e-035
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2 / +2
Query: 527 PLQGPFSLRVTNES 568
PLQ PFS+R+ + S
Sbjct: 734 PLQAPFSIRLQSLS 775
>gb|DR743783.1|DR743783 RTCU1_18_D05.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_18_D05_A029 3', mRNA sequence
Length = 793
Score = 92.3 bits (195), Expect(4) = 6e-035
Identities = 33/78 (42%), Positives = 54/78 (69%)
Frame = +2 / -1
Query: 212 HFDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIERGSNPNYLAVLV 391
HFDLSGTAF MA + L + G++ + F+RVPC+YPG + F++ G++ + A+L+
Sbjct: 340 HFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYPGKNIAFNVNGGASDYWFAILI 161
Query: 392 EYENGDGDVVQVDLMESS 445
EYE+GDGD+ V + +++
Sbjct: 160 EYEDGDGDLRAVYIKQAN 107
Score = 63.4 bits (132), Expect(4) = 6e-035
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = +2 / -1
Query: 2 GRVGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIIT 181
G GG V PF + + G+ +FK G GCG+CYQ++C + CS A TV+IT
Sbjct: 562 GSDGGACGYGSLVKQSPFQSKIAAGSPALFKGGTGCGACYQVKCTENGLCSQTAVTVVIT 383
Query: 182 D 184
D
Sbjct: 382 D 380
Score = 25.8 bits (50), Expect(4) = 6e-035
Identities = 6/19 (31%), Positives = 13/19 (68%)
Frame = +2 / -1
Query: 464 TGVWEPMRESWGSIWRMDT 520
+ W+ M E+WG+ W +++
Sbjct: 106 SNTWQGMEETWGANWCLNS 50
Score = 22.1 bits (42), Expect(4) = 6e-035
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2 / -1
Query: 527 PLQGPFSLRVTNES 568
PLQ PFS+R+ + S
Sbjct: 46 PLQAPFSIRLQSLS 5
>gb|AW011133.1|AW011133 ST17B02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST17B02, mRNA sequence
Length = 598
Score = 88.6 bits (187), Expect(4) = 1e-034
Identities = 33/80 (41%), Positives = 51/80 (63%)
Frame = +2 / +2
Query: 212 HFDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIERGSNPNYLAVLV 391
HFDLSG AFG MA + L ++G + + ++R C+YPG +TFH+ GS + ++L+
Sbjct: 143 HFDLSGAAFGHMATNGKTPALLNSGELPVLYRRTLCEYPGKNITFHVTEGSTAYWFSILI 322
Query: 392 EYENGDGDVVQVDLMESSPD 451
YE+GDGDV + L ++ D
Sbjct: 323 GYEDGDGDVGAMHLKQAESD 382
Score = 49.6 bits (102), Expect(4) = 1e-034
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +2 / +2
Query: 86 IFKDGKGCGSCYQIRCKAHPACSGVAETVIITD 184
+FK G+GCG+CY+++C +CS TV+ITD
Sbjct: 8 VFKGGEGCGACYKVKCMEKGSCSEKPVTVVITD 106
Score = 35.4 bits (71), Expect(4) = 1e-034
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2 / +2
Query: 473 WEPMRESWGSIWRMDTRRPLQGPFSLRVTNESGK 574
W MR WG+ W + L+ PFS+RVT + K
Sbjct: 386 WMEMRHVWGANWCLLGNDSLKXPFSVRVTTLTSK 487
Score = 29.0 bits (57), Expect(4) = 1e-034
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2 / +2
Query: 557 TNESGKTLVADQVIPADWQPDNVYSSIVQFE 649
T S +TL A VIP W P+ Y + + F+
Sbjct: 473 TLTSKRTLSARNVIPEHWYPNATYKARLNFD 565
>gb|DR385457.1|DR385457 RTHG1_8_F09.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_8_F09_A029 5', mRNA sequence
Length = 717
Score = 92.3 bits (195), Expect(3) = 3e-033
Identities = 33/78 (42%), Positives = 54/78 (69%)
Frame = +2 / +3
Query: 212 HFDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIERGSNPNYLAVLV 391
HFDLSGTAF MA + L + G++ + F+RVPC+YPG + F++ G++ + A+L+
Sbjct: 411 HFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYPGKNIAFNVNGGASDYWFAILI 590
Query: 392 EYENGDGDVVQVDLMESS 445
EYE+GDGD+ V + +++
Sbjct: 591 EYEDGDGDLRAVYIKQAN 644
Score = 63.4 bits (132), Expect(3) = 3e-033
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = +2 / +3
Query: 2 GRVGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIIT 181
G GG V PF + + G+ +FK G GCG+CYQ++C + CS A TV+IT
Sbjct: 189 GSDGGACGYGSLVKQSPFQSKIAAGSPALFKGGTGCGACYQVKCTENGLCSQTAVTVVIT 368
Query: 182 D 184
D
Sbjct: 369 D 371
Score = 24.9 bits (48), Expect(3) = 3e-033
Identities = 6/19 (31%), Positives = 12/19 (63%)
Frame = +2 / +3
Query: 464 TGVWEPMRESWGSIWRMDT 520
+ W+ M E+WG W +++
Sbjct: 645 SNTWQGMEETWGCNWCLNS 701
>gb|DR745426.1|DR745426 RTCU1_29_B05.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_29_B05_A029 5', mRNA sequence
Length = 619
Score = 91.8 bits (194), Expect(2) = 1e-031
Identities = 33/66 (50%), Positives = 48/66 (72%)
Frame = +2 / +1
Query: 212 HFDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIERGSNPNYLAVLV 391
HFDLSGT+F MA + + +AGI+ I F+RVPC+YPG + FH+ G++ ++ A+LV
Sbjct: 421 HFDLSGTSFTDMASPGTSSDFLNAGIVSILFRRVPCEYPGNNIAFHVNEGASDHWFAILV 600
Query: 392 EYENGD 409
EYE+GD
Sbjct: 601 EYEDGD 618
Score = 65.7 bits (137), Expect(2) = 1e-031
Identities = 25/61 (40%), Positives = 35/61 (57%)
Frame = +2 / +1
Query: 2 GRVGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIIT 181
G GG V PF + + G+ +F+ GKGCG+CYQ++C + CS A TV+IT
Sbjct: 199 GSEGGACGYGSVVKEKPFQSKVAAGSPALFEGGKGCGACYQVKCTENSVCSQTAVTVVIT 378
Query: 182 D 184
D
Sbjct: 379 D 381
>gb|DR743865.1|DR743865 RTCU1_18_D05.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_18_D05_A029 5', mRNA sequence
Length = 707
Score = 92.3 bits (195), Expect(4) = 1e-027
Identities = 33/78 (42%), Positives = 54/78 (69%)
Frame = +2 / -2
Query: 212 HFDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIERGSNPNYLAVLV 391
HFDLSGTAF MA + L + G++ + F+RVPC+YPG + F++ G++ + A+L+
Sbjct: 697 HFDLSGTAFTDMASAGASSNLLNTGVVSVLFRRVPCEYPGKNIAFNVNGGASDYWFAILI 518
Query: 392 EYENGDGDVVQVDLMESS 445
EYE+GDGD+ V + +++
Sbjct: 517 EYEDGDGDLRAVYIKQAN 464
Score = 38.6 bits (78), Expect(4) = 1e-027
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2 / -2
Query: 566 SGKTLVADQVIPADWQPDNVYSSIVQFE* 652
+G+TL A+ VIP +WQP Y S+V + *
Sbjct: 361 TGRTLTANNVIPQNWQPGATYRSLVNYH* 275
Score = 25.8 bits (50), Expect(4) = 1e-027
Identities = 6/19 (31%), Positives = 13/19 (68%)
Frame = +2 / -2
Query: 464 TGVWEPMRESWGSIWRMDT 520
+ W+ M E+WG+ W +++
Sbjct: 463 SNTWQGMEETWGANWCLNS 407
Score = 22.1 bits (42), Expect(4) = 1e-027
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2 / -2
Query: 527 PLQGPFSLRVTNES 568
PLQ PFS+R+ + S
Sbjct: 403 PLQAPFSIRLQSLS 362
>gb|BE496299.1|BE496299 NXCI_022_D05_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_022_D05 5' similar to Arabidopsis
thaliana sequence At4g28250 putative
beta-expansin/allergen protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 458
Score = 91.8 bits (194), Expect(2) = 3e-022
Identities = 34/80 (42%), Positives = 51/80 (63%)
Frame = +2 / +1
Query: 212 HFDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIERGSNPNYLAVLV 391
HFDLSG AFG MA + L + G + + ++R C+YPG +TFH+ GS + ++L+
Sbjct: 13 HFDLSGAAFGRMATNGKTPALLNTGELPVLYRRTLCEYPGKNITFHVTEGSTAYWFSILI 192
Query: 392 EYENGDGDVVQVDLMESSPD 451
EYE+GDGDV + L ++ D
Sbjct: 193 EYEDGDGDVGAMHLKQADSD 252
Score = 33.6 bits (67), Expect(2) = 3e-022
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2 / +1
Query: 473 WEPMRESWGSIWRMDTRRPLQGPFSLRVTNESGKTLVADQVIPAD 607
W M WG+ W + PL+ PFS VT + K ++ + + D
Sbjct: 256 WMEMNHVWGANWCLLGGTPLKAPFSXXVTTLTSKRTLSARNVIPD 390
>gb|CF391425.1|CF391425 RTDR3_1_E05.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_1_E05_A022 5', mRNA
sequence
Length = 666
Score = 55.6 bits (115), Expect(4) = 3e-022
Identities = 20/48 (41%), Positives = 33/48 (68%)
Frame = +2 / +3
Query: 215 FDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIER 358
F ++ + F +MA +H D+L AGIIDI++KRVPCQY ++ +++
Sbjct: 228 FVVTRSTFSSMALPDHGDQLLKAGIIDIEYKRVPCQYKNQNMSVKVDK 371
Score = 52.4 bits (108), Expect(4) = 3e-022
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2 / +3
Query: 2 GRVGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIIT 181
G V GACG+ + + ++++G CG+CYQ+RC C+ T+++T
Sbjct: 21 GAVDVGACGYGSFAETLYGGNVGGSSRDLYRNGVACGACYQMRCTDSKLCTKSGTTIVVT 200
Query: 182 D 184
D
Sbjct: 201 D 203
Score = 31.8 bits (63), Expect(4) = 3e-022
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2 / +3
Query: 368 PNYLAVLVEYENGDGDVVQVDL 433
PNYLAV Y+ G D+V VD+
Sbjct: 384 PNYLAVQFLYQGGQTDIVSVDV 449
Score = 24.0 bits (46), Expect(4) = 3e-022
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2 / +3
Query: 593 VIPADWQPDNVYSSIVQ 643
V+P+DW+ VY S +Q
Sbjct: 597 VLPSDWKVGGVYDSGLQ 647
>gb|CV035358.1|CV035358 RTNACL1_15_C01.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_15_C01_A029 5', mRNA sequence
Length = 758
Score = 55.6 bits (115), Expect(4) = 5e-022
Identities = 20/48 (41%), Positives = 33/48 (68%)
Frame = +2 / +2
Query: 215 FDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIER 358
F ++ + F +MA +H D+L AGIIDI++KRVPCQY ++ +++
Sbjct: 311 FVVTRSTFSSMALPDHGDQLLKAGIIDIEYKRVPCQYKNQNMSVKVDK 454
Score = 52.4 bits (108), Expect(4) = 5e-022
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2 / +2
Query: 2 GRVGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIIT 181
G V GACG+ + + ++++G CG+CYQ+RC C+ T+++T
Sbjct: 104 GAVDVGACGYGSFAETLYGGNVGGSSRDLYRNGVACGACYQMRCTDSKLCTKSGTTIVVT 283
Query: 182 D 184
D
Sbjct: 284 D 286
Score = 31.8 bits (63), Expect(4) = 5e-022
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2 / +2
Query: 368 PNYLAVLVEYENGDGDVVQVDL 433
PNYLAV Y+ G D+V VD+
Sbjct: 467 PNYLAVQFLYQGGQTDIVSVDV 532
Score = 24.0 bits (46), Expect(4) = 5e-022
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2 / +2
Query: 593 VIPADWQPDNVYSSIVQ 643
V+P+DW+ VY S +Q
Sbjct: 680 VLPSDWKVGGVYDSGLQ 730
>gb|DR181270.1|DR181270 RTMNUT1_37_H02.g2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_37_H02_A029 5', mRNA sequence
Length = 872
Score = 55.6 bits (115), Expect(4) = 8e-022
Identities = 20/48 (41%), Positives = 33/48 (68%)
Frame = +2 / +3
Query: 215 FDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIER 358
F ++ + F +MA +H D+L AGIIDI++KRVPCQY ++ +++
Sbjct: 324 FVVTRSTFSSMALPDHGDQLLKAGIIDIEYKRVPCQYKNQNMSVKVDK 467
Score = 52.4 bits (108), Expect(4) = 8e-022
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2 / +3
Query: 2 GRVGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIIT 181
G V GACG+ + + ++++G CG+CYQ+RC C+ T+++T
Sbjct: 117 GAVDVGACGYGSFAETLYGGNVGGSSRDLYRNGVACGACYQMRCTDSKLCTKSGTTIVVT 296
Query: 182 D 184
D
Sbjct: 297 D 299
Score = 31.8 bits (63), Expect(4) = 8e-022
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2 / +3
Query: 368 PNYLAVLVEYENGDGDVVQVDL 433
PNYLAV Y+ G D+V VD+
Sbjct: 480 PNYLAVQFLYQGGQTDIVSVDV 545
Score = 24.0 bits (46), Expect(4) = 8e-022
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2 / +3
Query: 593 VIPADWQPDNVYSSIVQ 643
V+P+DW+ VY S +Q
Sbjct: 693 VLPSDWKVGGVYDSGLQ 743
>gb|CF479073.1|CF479073 RTWW3_21_F01.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_21_F01_A022 5', mRNA sequence
Length = 761
Score = 54.7 bits (113), Expect(4) = 9e-022
Identities = 20/48 (41%), Positives = 33/48 (68%)
Frame = +2 / +2
Query: 215 FDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIER 358
F ++ + F +MA + D+L AGIIDI++KRVPCQY G ++ +++
Sbjct: 323 FVVTRSTFSSMALPDQGDQLLKAGIIDIEYKRVPCQYKGQNMSVKVDK 466
Score = 52.4 bits (108), Expect(4) = 9e-022
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2 / +2
Query: 2 GRVGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIIT 181
G V GACG+ + + ++++G CG+CYQ+RC C+ T+++T
Sbjct: 116 GAVDVGACGYGSFAETLYGGNVGGSSRDLYRNGVACGACYQMRCTDSKLCTKSGTTIVVT 295
Query: 182 D 184
D
Sbjct: 296 D 298
Score = 31.8 bits (63), Expect(4) = 9e-022
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2 / +2
Query: 368 PNYLAVLVEYENGDGDVVQVDL 433
PNYLAV Y+ G D+V VD+
Sbjct: 479 PNYLAVQFLYQGGQTDIVSVDV 544
Score = 24.0 bits (46), Expect(4) = 9e-022
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2 / +2
Query: 593 VIPADWQPDNVYSSIVQ 643
V+P+DW+ VY S +Q
Sbjct: 692 VLPSDWKVGGVYDSGLQ 742
>gb|DR011933.1|DR011933 HEAT1_8_G10.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_8_G10_A029 5', mRNA sequence
Length = 781
Score = 55.6 bits (115), Expect(3) = 3e-021
Identities = 20/48 (41%), Positives = 33/48 (68%)
Frame = +2 / +1
Query: 215 FDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIER 358
F ++ + F +MA +H D+L AGIIDI++KRVPCQY ++ +++
Sbjct: 322 FVVTRSTFSSMALPDHGDQLLKAGIIDIEYKRVPCQYKNQNMSVKVDK 465
Score = 52.4 bits (108), Expect(3) = 3e-021
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2 / +1
Query: 2 GRVGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIIT 181
G V GACG+ + + ++++G CG+CYQ+RC C+ T+++T
Sbjct: 115 GAVDVGACGYGSFAETLYGGNVGGSSRDLYRNGVACGACYQMRCTDSKLCTKSGTTIVVT 294
Query: 182 D 184
D
Sbjct: 295 D 297
Score = 31.8 bits (63), Expect(3) = 3e-021
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2 / +1
Query: 368 PNYLAVLVEYENGDGDVVQVDL 433
PNYLAV Y+ G D+V VD+
Sbjct: 478 PNYLAVQFLYQGGQTDIVSVDV 543
>gb|CF393979.1|CF393979 RTDS2_2_G11.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_2_G11_A021 5', mRNA sequence
Length = 715
Score = 55.6 bits (115), Expect(3) = 3e-021
Identities = 20/48 (41%), Positives = 33/48 (68%)
Frame = +2 / +3
Query: 215 FDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIER 358
F ++ + F +MA +H D+L AGIIDI++KRVPCQY ++ +++
Sbjct: 333 FVVTRSTFSSMALPDHGDQLLKAGIIDIEYKRVPCQYKNQNMSVKVDK 476
Score = 52.4 bits (108), Expect(3) = 3e-021
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2 / +3
Query: 2 GRVGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIIT 181
G V GACG+ + + ++++G CG+CYQ+RC C+ T+++T
Sbjct: 126 GAVDVGACGYGSFAETLYGGNVGGSSRDLYRNGVACGACYQMRCTDSKLCTKSGTTIVVT 305
Query: 182 D 184
D
Sbjct: 306 D 308
Score = 31.8 bits (63), Expect(3) = 3e-021
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2 / +3
Query: 368 PNYLAVLVEYENGDGDVVQVDL 433
PNYLAV Y+ G D+V VD+
Sbjct: 489 PNYLAVQFLYQGGQTDIVSVDV 554
>gb|DR388929.1|DR388929 RTHG1_31_H05.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_31_H05_A029 3', mRNA sequence
Length = 689
Score = 55.6 bits (115), Expect(3) = 3e-021
Identities = 20/48 (41%), Positives = 33/48 (68%)
Frame = +2 / -1
Query: 215 FDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIER 358
F ++ + F +MA +H D+L AGIIDI++KRVPCQY ++ +++
Sbjct: 356 FVVTRSTFSSMALPDHGDQLLKAGIIDIEYKRVPCQYKNQNMSVKVDK 213
Score = 52.4 bits (108), Expect(3) = 3e-021
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2 / -1
Query: 2 GRVGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIIT 181
G V GACG+ + + ++++G CG+CYQ+RC C+ T+++T
Sbjct: 563 GAVDVGACGYGSFAETLYGGNVGGSSRDLYRNGVACGACYQMRCTDSKLCTKSGTTIVVT 384
Query: 182 D 184
D
Sbjct: 383 D 381
Score = 31.8 bits (63), Expect(3) = 3e-021
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2 / -1
Query: 368 PNYLAVLVEYENGDGDVVQVDL 433
PNYLAV Y+ G D+V VD+
Sbjct: 200 PNYLAVQFLYQGGQTDIVSVDV 135
>gb|CF398579.1|CF398579 RTDS3_15_F12.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_15_F12_A022 5', mRNA sequence
Length = 628
Score = 55.6 bits (115), Expect(3) = 3e-021
Identities = 20/48 (41%), Positives = 33/48 (68%)
Frame = +2 / +3
Query: 215 FDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIER 358
F ++ + F +MA +H D+L AGIIDI++KRVPCQY ++ +++
Sbjct: 324 FVVTRSTFSSMALPDHGDQLLKAGIIDIEYKRVPCQYKNQNMSVKVDK 467
Score = 52.4 bits (108), Expect(3) = 3e-021
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2 / +3
Query: 2 GRVGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIIT 181
G V GACG+ + + ++++G CG+CYQ+RC C+ T+++T
Sbjct: 117 GAVDVGACGYGSFAETLYGGNVGGSSRDLYRNGVACGACYQMRCTDSKLCTKSGTTIVVT 296
Query: 182 D 184
D
Sbjct: 297 D 299
Score = 31.8 bits (63), Expect(3) = 3e-021
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2 / +3
Query: 368 PNYLAVLVEYENGDGDVVQVDL 433
PNYLAV Y+ G D+V VD+
Sbjct: 480 PNYLAVQFLYQGGQTDIVSVDV 545
>gb|DR745139.1|DR745139 RTCU1_27_G04.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_27_G04_A029 3', mRNA sequence
Length = 761
Score = 54.7 bits (113), Expect(3) = 4e-021
Identities = 20/48 (41%), Positives = 33/48 (68%)
Frame = +2 / -1
Query: 215 FDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIER 358
F ++ + F +MA + D+L AGIIDI++KRVPCQY G ++ +++
Sbjct: 404 FVVTRSTFSSMALPDQGDQLLKAGIIDIEYKRVPCQYKGQNMSVKVDK 261
Score = 52.8 bits (109), Expect(3) = 4e-021
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2 / -1
Query: 2 GRVGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIIT 181
G V GACG+ + + ++++G CG+CYQ+RC C+ T+++T
Sbjct: 611 GAVNVGACGYGSFAATLYCGNVGGSSRDLYRNGVACGACYQMRCTDSKLCNKSGTTIVVT 432
Query: 182 D 184
D
Sbjct: 431 D 429
Score = 31.8 bits (63), Expect(3) = 4e-021
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2 / -1
Query: 368 PNYLAVLVEYENGDGDVVQVDL 433
PNYLAV Y+ G D+V VD+
Sbjct: 248 PNYLAVQFLYQGGQTDIVSVDV 183
>gb|CF397256.1|CF397256 RTDS3_2_C11.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_2_C11_A022 5', mRNA sequence
Length = 719
Score = 54.7 bits (113), Expect(3) = 5e-021
Identities = 20/48 (41%), Positives = 33/48 (68%)
Frame = +2 / +1
Query: 215 FDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIER 358
F ++ + F +MA + D+L AGIIDI++KRVPCQY G ++ +++
Sbjct: 334 FVVTRSTFSSMALPDQGDQLLKAGIIDIEYKRVPCQYKGQNMSVKVDK 477
Score = 52.4 bits (108), Expect(3) = 5e-021
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2 / +1
Query: 2 GRVGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIIT 181
G V GACG+ + + ++++G CG+CYQ+RC C+ T+++T
Sbjct: 127 GAVDVGACGYGSFAETLYGGNVGGSSRDLYRNGVACGACYQMRCTDSKLCTKSGTTIVVT 306
Query: 182 D 184
D
Sbjct: 307 D 309
Score = 31.8 bits (63), Expect(3) = 5e-021
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2 / +1
Query: 368 PNYLAVLVEYENGDGDVVQVDL 433
PNYLAV Y+ G D+V VD+
Sbjct: 490 PNYLAVQFLYQGGQTDIVSVDV 555
>gb|DR057131.1|DR057131 RTNIT1_2_G01.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_2_G01_A029 5', mRNA sequence
Length = 699
Score = 54.7 bits (113), Expect(3) = 5e-021
Identities = 20/48 (41%), Positives = 33/48 (68%)
Frame = +2 / +3
Query: 215 FDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIER 358
F ++ + F +MA + D+L AGIIDI++KRVPCQY G ++ +++
Sbjct: 351 FVVTRSTFSSMALPDQGDQLLKAGIIDIEYKRVPCQYKGQNMSVKVDK 494
Score = 52.4 bits (108), Expect(3) = 5e-021
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2 / +3
Query: 2 GRVGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIIT 181
G V GACG+ + + ++++G CG+CYQ+RC C+ T+++T
Sbjct: 144 GAVDVGACGYGSFAETLYGGNVGGSSRDLYRNGVACGACYQMRCTDSKLCTKSGTTIVVT 323
Query: 182 D 184
D
Sbjct: 324 D 326
Score = 31.8 bits (63), Expect(3) = 5e-021
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2 / +3
Query: 368 PNYLAVLVEYENGDGDVVQVDL 433
PNYLAV Y+ G D+V VD+
Sbjct: 507 PNYLAVQFLYQGGQTDIVSVDV 572
>gb|CF471750.1|CF471750 RTDS1_6_B12.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_6_B12_A015 5', mRNA sequence
Length = 692
Score = 54.7 bits (113), Expect(3) = 5e-021
Identities = 20/48 (41%), Positives = 33/48 (68%)
Frame = +2 / +1
Query: 215 FDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIER 358
F ++ + F +MA + D+L AGIIDI++KRVPCQY G ++ +++
Sbjct: 358 FVVTRSTFSSMALPDQGDQLLKAGIIDIEYKRVPCQYKGQNMSVKVDK 501
Score = 52.4 bits (108), Expect(3) = 5e-021
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2 / +1
Query: 2 GRVGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIIT 181
G V GACG+ + + ++++G CG+CYQ+RC C+ T+++T
Sbjct: 151 GAVDVGACGYGSFAETLYGGNVGGSSRDLYRNGVACGACYQMRCTDSKLCTKSGTTIVVT 330
Query: 182 D 184
D
Sbjct: 331 D 333
Score = 31.8 bits (63), Expect(3) = 5e-021
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2 / +1
Query: 368 PNYLAVLVEYENGDGDVVQVDL 433
PNYLAV Y+ G D+V VD+
Sbjct: 514 PNYLAVQFLYQGGQTDIVSVDV 579
>gb|CO200013.1|CO200013 GEO2_4_H10.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_4_H10_A032 5', mRNA sequence
Length = 690
Score = 54.7 bits (113), Expect(3) = 5e-021
Identities = 20/48 (41%), Positives = 33/48 (68%)
Frame = +2 / +2
Query: 215 FDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIER 358
F ++ + F +MA + D+L AGIIDI++KRVPCQY G ++ +++
Sbjct: 302 FVVTRSTFSSMALPDQGDQLLKAGIIDIEYKRVPCQYKGQNMSVKVDK 445
Score = 52.4 bits (108), Expect(3) = 5e-021
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2 / +2
Query: 2 GRVGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIIT 181
G V GACG+ + + ++++G CG+CYQ+RC C+ T+++T
Sbjct: 95 GAVDVGACGYGSFAETLYGGNVGGSSRDLYRNGVACGACYQMRCTDSKLCTKSGTTIVVT 274
Query: 182 D 184
D
Sbjct: 275 D 277
Score = 31.8 bits (63), Expect(3) = 5e-021
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2 / +2
Query: 368 PNYLAVLVEYENGDGDVVQVDL 433
PNYLAV Y+ G D+V VD+
Sbjct: 458 PNYLAVQFLYQGGQTDIVSVDV 523
>gb|CF398819.1|CF398819 RTDS3_16_B06.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_16_B06_A022 5', mRNA sequence
Length = 549
Score = 54.7 bits (113), Expect(3) = 5e-021
Identities = 20/48 (41%), Positives = 33/48 (68%)
Frame = +2 / +1
Query: 215 FDLSGTAFGAMAKDEHNDELRHAGIIDIQFKRVPCQYPGLTVTFHIER 358
F ++ + F +MA + D+L AGIIDI++KRVPCQY G ++ +++
Sbjct: 322 FVVTRSTFSSMALPDQGDQLLKAGIIDIEYKRVPCQYKGQNMSVKVDK 465
Score = 52.4 bits (108), Expect(3) = 5e-021
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2 / +1
Query: 2 GRVGGGACGFKGVNMPPFSAMTSCGNEPIFKDGKGCGSCYQIRCKAHPACSGVAETVIIT 181
G V GACG+ + + ++++G CG+CYQ+RC C+ T+++T
Sbjct: 115 GAVDVGACGYGSFAETLYGGNVGGSSRDLYRNGVACGACYQMRCTDSKLCTKSGTTIVVT 294
Query: 182 D 184
D
Sbjct: 295 D 297
Score = 31.8 bits (63), Expect(3) = 5e-021
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2 / +1
Query: 368 PNYLAVLVEYENGDGDVVQVDL 433
PNYLAV Y+ G D+V VD+
Sbjct: 478 PNYLAVQFLYQGGQTDIVSVDV 543
>gb|DR387045.1|DR387045 RTHG1_19_C01.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_19_C01_A029 3', mRNA sequence
Length = 725
Score = 68.9 bits (144), Expect(4) = 6e-021
Identities = 21/56 (37%), Positives = 41/56 (73%)
Frame = +2 / +2
Query: 278 HAGIIDIQFKRVPCQYPGLTVTFHIERGSNPNYLAVLVEYENGDGDVVQVDLMESS 445
+ G++ + F+RVPC+YPG + F++ G++ + A+L+EYE+GDGD+ V + +++
Sbjct: 5 NTGVVSVLFRRVPCEYPGKNIAFNVNGGASDYWFAILIEYEDGDGDLRAVYIKQAN 172
Score = 38.6 bits (78), Expect(4) = 6e-021
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2 / +2
Query: 566 SGKTLVADQVIPADWQPDNVYSSIVQFE* 652
+G+TL A+ VIP +WQP Y S+V + *
Sbjct: 275 TGRTLTANNVIPQNWQPGATYRSLVNYH* 361
Score = 25.8 bits (50), Expect(4) = 6e-021
Identities = 6/19 (31%), Positives = 13/19 (68%)
Frame = +2 / +2
Query: 464 TGVWEPMRESWGSIWRMDT 520
+ W+ M E+WG+ W +++
Sbjct: 173 SNTWQGMEETWGANWCLNS 229
Score = 22.1 bits (42), Expect(4) = 6e-021
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2 / +2
Query: 527 PLQGPFSLRVTNES 568
PLQ PFS+R+ + S
Sbjct: 233 PLQAPFSIRLQSLS 274
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 391,958,743
Number of Sequences: 355925
Number of extensions: 5002181
Number of successful extensions: 42431
Number of sequences better than 1.0e-020: 26
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 13390430000
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)