TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8636621.2.1
(691 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR079387.1|DR079387 RTFEPL1_11_A03.b1_A029 Roots plus ad... 171 3e-042
gb|DR094045.1|DR094045 STRR1_12_C07.b1_A033 Stem Response R... 171 3e-042
gb|BX252722.1|BX252722 BX252722 Pinus pinaster differenciat... 169 2e-041
gb|AY608411.1| Pinus taeda nodulin-like protein 5NG4 mRNA, ... 169 2e-041
gb|DR744233.1|DR744233 RTCU1_21_C08.b1_A029 Roots plus adde... 161 5e-039
gb|BX249072.1|BX249072 BX249072 Pinus pinaster differenciat... 145 2e-034
gb|BX677847.1|BX677847 BX677847 RN Pinus pinaster cDNA clon... 143 2e-033
gb|BQ701082.1|BQ701082 NXRV115_D05_F NXRV (Nsf Xylem Root w... 140 8e-033
gb|BM427704.1|BM427704 NXRV_001_H10_F NXRV (Nsf Xylem Root ... 139 1e-032
gb|BQ700309.1|BQ700309 NXRV103_H06_F NXRV (Nsf Xylem Root w... 134 5e-031
gb|BX250854.1|BX250854 BX250854 Pinus pinaster differenciat... 127 1e-028
gb|CF390172.1|CF390172 RTDR2_12_A06.g1_A021 Loblolly pine r... 121 7e-027
gb|BX680621.1|BX680621 BX680621 RS Pinus pinaster cDNA clon... 116 1e-025
gb|BQ700429.1|BQ700429 NXRV105_E11_F NXRV (Nsf Xylem Root w... 116 2e-025
gb|BX253712.1|BX253712 BX253712 Pinus pinaster differenciat... 113 1e-024
gb|BM427993.1|BM427993 NXRV_007_C09_F NXRV (Nsf Xylem Root ... 94 5e-021
>gb|DR079387.1|DR079387 RTFEPL1_11_A03.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_11_A03_A029 3', mRNA sequence
Length = 811
Score = 171 bits (369), Expect = 3e-042
Identities = 70/106 (66%), Positives = 83/106 (78%)
Frame = -3 / +3
Query: 689 LLQFLAIAAFTEEDLSRWKVRSGGELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQ 510
++QFLAIAAF E D S WK+ SGGELFT+LYAG+VASG+AF++QIWCIDRGGP+F AV+Q
Sbjct: 240 IIQFLAIAAFFERDPSHWKMHSGGELFTVLYAGIVASGIAFSVQIWCIDRGGPVFVAVYQ 419
Query: 509 PVQTVAVAVMASAILGDQLYTXXXXXXXXXXXXLYFVLWGKSAEKK 372
PVQT+AVAVMAS ILG+Q Y LY VLWGKS EK+
Sbjct: 420 PVQTIAVAVMASIILGEQFYLGGIIGAILIIAGLYLVLWGKSEEKR 557
Score = 136 bits (292), Expect = 1e-031
Identities = 62/102 (60%), Positives = 73/102 (71%)
Frame = +1 / -1
Query: 376 FSALLPHSTK*RPMTISTAPMIPPV*SWSPRMAEAMTATATVCTGWKTAVKSGPPLSMHQ 555
FS+L PHSTK RP + AP+IPP *+ SPR+ +A+TATA V TGW TA +GPPLS+H
Sbjct: 553 FSSLFPHSTKYRPAIMRIAPIIPPR*NCSPRIMDAITATAIV*TGWYTATNTGPPLSIHH 374
Query: 556 ICRANATPDATRPAYRMVKSSPPERTFHLLRSSSVKAAMARN 681
I A P+AT PAYR VKSSPPE F L S S KAA+ARN
Sbjct: 373 IWTEKAMPEATIPAYRTVKSSPPECIFQ*LGSLSKKAAIARN 248
>gb|DR094045.1|DR094045 STRR1_12_C07.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_C07_A033 3', mRNA sequence
Length = 817
Score = 171 bits (369), Expect = 3e-042
Identities = 70/106 (66%), Positives = 83/106 (78%)
Frame = -3 / +3
Query: 689 LLQFLAIAAFTEEDLSRWKVRSGGELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQ 510
++QFLAIAAF E D S WK+ SGGELFT+LYAG+VASG+AF++QIWCIDRGGP+F AV+Q
Sbjct: 204 IIQFLAIAAFFERDPSHWKMHSGGELFTVLYAGIVASGIAFSVQIWCIDRGGPVFVAVYQ 383
Query: 509 PVQTVAVAVMASAILGDQLYTXXXXXXXXXXXXLYFVLWGKSAEKK 372
PVQT+AVAVMAS ILG+Q Y LY VLWGKS EK+
Sbjct: 384 PVQTIAVAVMASIILGEQFYLGGIIGAILIIAGLYLVLWGKSEEKR 521
Score = 136 bits (292), Expect = 1e-031
Identities = 62/102 (60%), Positives = 73/102 (71%)
Frame = +1 / -1
Query: 376 FSALLPHSTK*RPMTISTAPMIPPV*SWSPRMAEAMTATATVCTGWKTAVKSGPPLSMHQ 555
FS+L PHSTK RP + AP+IPP *+ SPR+ +A+TATA V TGW TA +GPPLS+H
Sbjct: 517 FSSLFPHSTKYRPAIMRIAPIIPPR*NCSPRIMDAITATAIV*TGWYTATNTGPPLSIHH 338
Query: 556 ICRANATPDATRPAYRMVKSSPPERTFHLLRSSSVKAAMARN 681
I A P+AT PAYR VKSSPPE F L S S KAA+ARN
Sbjct: 337 IWTEKAMPEATIPAYRTVKSSPPECIFQ*LGSLSKKAAIARN 212
>gb|BX252722.1|BX252722 BX252722 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP069G04, mRNA sequence
Length = 678
Score = 169 bits (364), Expect = 2e-041
Identities = 69/106 (65%), Positives = 81/106 (76%)
Frame = -3 / +1
Query: 689 LLQFLAIAAFTEEDLSRWKVRSGGELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQ 510
++QFL IAAF E DL WK+ SGGELFTILYAG VASG+AF++QIWCIDRGGP+F AV+Q
Sbjct: 94 VIQFLIIAAFFETDLEHWKIHSGGELFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQ 273
Query: 509 PVQTVAVAVMASAILGDQLYTXXXXXXXXXXXXLYFVLWGKSAEKK 372
PVQT+AVA+MAS ILG+Q Y LY VLWGKS EK+
Sbjct: 274 PVQTIAVAIMASIILGEQFYLGGILGAILIIIGLYLVLWGKSEEKR 411
Score = 149 bits (320), Expect = 2e-035
Identities = 66/102 (64%), Positives = 74/102 (72%)
Frame = +1 / -2
Query: 376 FSALLPHSTK*RPMTISTAPMIPPV*SWSPRMAEAMTATATVCTGWKTAVKSGPPLSMHQ 555
FS+LLPH T+*RPM I AP IPP *+ SPRM +A+ ATA VCTGW TA +GPPLSMH
Sbjct: 407 FSSLLPHRTR*RPMIIRIAPSIPPR*NCSPRMIDAIIATAIVCTGW*TATNTGPPLSMHH 228
Query: 556 ICRANATPDATRPAYRMVKSSPPERTFHLLRSSSVKAAMARN 681
I A P+AT PAYRMVKSSPPE F RS S KAAM +N
Sbjct: 227 I*TEKAIPEATNPAYRMVKSSPPEWIFQCSRSVSKKAAMIKN 102
>gb|AY608411.1| Pinus taeda nodulin-like protein 5NG4 mRNA, complete cds
Length = 1651
Score = 169 bits (364), Expect = 2e-041
Identities = 69/106 (65%), Positives = 81/106 (76%)
Frame = -3 / +3
Query: 689 LLQFLAIAAFTEEDLSRWKVRSGGELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQ 510
++QFL IAAF E DL WK+ SGGELFTILYAG VASG+AF++QIWCIDRGGP+F AV+Q
Sbjct: 924 VIQFLIIAAFFETDLEHWKIHSGGELFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQ 1103
Query: 509 PVQTVAVAVMASAILGDQLYTXXXXXXXXXXXXLYFVLWGKSAEKK 372
PVQT+AVA+MAS ILG+Q Y LY VLWGKS EK+
Sbjct: 1104 PVQTIAVAIMASIILGEQFYLGGIFGAILIIIGLYLVLWGKSEEKR 1241
Score = 149 bits (319), Expect = 3e-035
Identities = 66/102 (64%), Positives = 74/102 (72%)
Frame = +1 / -1
Query: 376 FSALLPHSTK*RPMTISTAPMIPPV*SWSPRMAEAMTATATVCTGWKTAVKSGPPLSMHQ 555
FS+LLPH T+*RPM I AP IPP *+ SPRM +A+ ATA VCTGW TA +GPPLSMH
Sbjct: 1237 FSSLLPHRTR*RPMIIRIAPNIPPR*NCSPRMIDAIIATAIVCTGW*TATNTGPPLSMHH 1058
Query: 556 ICRANATPDATRPAYRMVKSSPPERTFHLLRSSSVKAAMARN 681
I A P+AT PAYRMVKSSPPE F RS S KAAM +N
Sbjct: 1057 I*TEKAIPEATNPAYRMVKSSPPEWIFQCSRSVSKKAAMIKN 932
>gb|DR744233.1|DR744233 RTCU1_21_C08.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_21_C08_A029 3', mRNA sequence
Length = 648
Score = 161 bits (346), Expect = 5e-039
Identities = 66/100 (66%), Positives = 77/100 (77%)
Frame = -3 / +1
Query: 671 IAAFTEEDLSRWKVRSGGELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQPVQTVA 492
IAAF E D S WK+ SGGELFT+LYAG+VASG+AF++QIWCIDRGGP+F AV+QPVQT+A
Sbjct: 1 IAAFFERDPSHWKMHSGGELFTVLYAGIVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIA 180
Query: 491 VAVMASAILGDQLYTXXXXXXXXXXXXLYFVLWGKSAEKK 372
VAVMAS ILG+Q Y LY VLWGKS EK+
Sbjct: 181 VAVMASIILGEQFYLGGIIGAILIIAGLYLVLWGKSEEKR 300
Score = 129 bits (276), Expect = 2e-029
Identities = 59/98 (60%), Positives = 69/98 (70%)
Frame = +1 / -2
Query: 376 FSALLPHSTK*RPMTISTAPMIPPV*SWSPRMAEAMTATATVCTGWKTAVKSGPPLSMHQ 555
FS+L PHSTK RP + AP+IPP *+ SPR+ +A+TATA V TGW TA +GPPLS+H
Sbjct: 296 FSSLFPHSTKYRPAIMRIAPIIPPR*NCSPRIMDAITATAIV*TGWYTATNTGPPLSIHH 117
Query: 556 ICRANATPDATRPAYRMVKSSPPERTFHLLRSSSVKAA 669
I A P+AT PAYR VKSSPPE F L S S KAA
Sbjct: 116 IWTEKAMPEATIPAYRTVKSSPPECIFQ*LGSLSKKAA 3
>gb|BX249072.1|BX249072 BX249072 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP014G12, mRNA sequence
Length = 680
Score = 145 bits (312), Expect = 2e-034
Identities = 56/80 (70%), Positives = 67/80 (83%)
Frame = -3 / +3
Query: 689 LLQFLAIAAFTEEDLSRWKVRSGGELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQ 510
++QFL IAAF E DL WK+ SGGELFTILYAG VASG+AF++QIWCIDRGGP+F AV+Q
Sbjct: 441 VIQFLIIAAFFETDLEHWKIHSGGELFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQ 620
Query: 509 PVQTVAVAVMASAILGDQLY 450
PVQT+ +MAS ILG+Q Y
Sbjct: 621 PVQTIGCCIMASIILGEQFY 680
Score = 103 bits (220), Expect = 1e-021
Identities = 45/74 (60%), Positives = 50/74 (67%)
Frame = +1 / -2
Query: 460 SPRMAEAMTATATVCTGWKTAVKSGPPLSMHQICRANATPDATRPAYRMVKSSPPERTFH 639
SPRM +A+ VCTGW TA +GPPLSMH I A P+AT PAYRMVKSSPPE F
Sbjct: 670 SPRMIDAIMQQPIVCTGW*TATNTGPPLSMHHI*TEKAIPEATNPAYRMVKSSPPEWIFQ 491
Query: 640 LLRSSSVKAAMARN 681
RS S KAAM +N
Sbjct: 490 CSRSVSKKAAMIKN 449
>gb|BX677847.1|BX677847 BX677847 RN Pinus pinaster cDNA clone RN45E03, mRNA sequence
Length = 566
Score = 143 bits (306), Expect = 2e-033
Identities = 58/91 (63%), Positives = 70/91 (76%)
Frame = -3 / +1
Query: 644 SRWKVRSGGELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMASAIL 465
+R ++ SGGELFTILYAG VASG+AF++QIWCIDRGGP+F AV+QPVQT+AVA+MAS IL
Sbjct: 7 NRHEIHSGGELFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAIMASIIL 186
Query: 464 GDQLYTXXXXXXXXXXXXLYFVLWGKSAEKK 372
G+Q Y LY VLWGKS EK+
Sbjct: 187 GEQFYLGGILGAILIIIGLYLVLWGKSEEKR 279
Score = 134 bits (287), Expect = 7e-031
Identities = 57/84 (67%), Positives = 64/84 (76%)
Frame = +1 / -1
Query: 376 FSALLPHSTK*RPMTISTAPMIPPV*SWSPRMAEAMTATATVCTGWKTAVKSGPPLSMHQ 555
FS+LLPH T+*RPM I AP IPP *+ SPRM +A+ ATA VCTGW TA +GPPLSMH
Sbjct: 275 FSSLLPHRTR*RPMIIRIAPSIPPR*NCSPRMIDAIIATAIVCTGW*TATNTGPPLSMHH 96
Query: 556 ICRANATPDATRPAYRMVKSSPPE 627
I A P+AT PAYRMVKSSPPE
Sbjct: 95 I*TEKAIPEATNPAYRMVKSSPPE 24
>gb|BQ701082.1|BQ701082 NXRV115_D05_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV115_D05 5' similar to Arabidopsis thaliana
sequence At1g75500 nodulin-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 753
Score = 140 bits (301), Expect = 8e-033
Identities = 57/87 (65%), Positives = 67/87 (77%)
Frame = -3 / +1
Query: 632 VRSGGELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMASAILGDQL 453
+ SGGELFTILYAG VASG+AF++QIWCIDRGGP+F AV+QPVQT+AVA+MAS ILG+Q
Sbjct: 4 IHSGGELFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAIMASIILGEQF 183
Query: 452 YTXXXXXXXXXXXXLYFVLWGKSAEKK 372
Y LY VLWGKS EK+
Sbjct: 184 YLGGIFGAILIIIGLYLVLWGKSEEKR 264
Score = 133 bits (286), Expect = 9e-031
Identities = 57/84 (67%), Positives = 64/84 (76%)
Frame = +1 / -2
Query: 376 FSALLPHSTK*RPMTISTAPMIPPV*SWSPRMAEAMTATATVCTGWKTAVKSGPPLSMHQ 555
FS+LLPH T+*RPM I AP IPP *+ SPRM +A+ ATA VCTGW TA +GPPLSMH
Sbjct: 260 FSSLLPHRTR*RPMIIRIAPNIPPR*NCSPRMIDAIIATAIVCTGW*TATNTGPPLSMHH 81
Query: 556 ICRANATPDATRPAYRMVKSSPPE 627
I A P+AT PAYRMVKSSPPE
Sbjct: 80 I*TEKAIPEATNPAYRMVKSSPPE 9
>gb|BM427704.1|BM427704 NXRV_001_H10_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_001_H10 5' similar to Arabidopsis thaliana
sequence At1g75500 nodulin-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 355
Score = 139 bits (299), Expect = 1e-032
Identities = 57/86 (66%), Positives = 66/86 (76%)
Frame = -3 / +2
Query: 632 VRSGGELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMASAILGDQL 453
+ SGGELFTILYAG VASG+AF++QIWCIDRGGP+F AV+QPVQT+AVA+MAS ILG+Q
Sbjct: 2 IHSGGELFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAIMASIILGEQF 181
Query: 452 YTXXXXXXXXXXXXLYFVLWGKSAEK 375
Y LY VLWGKS EK
Sbjct: 182 YLGGIFGAILIIIGLYLVLWGKSEEK 259
Score = 133 bits (286), Expect = 9e-031
Identities = 57/84 (67%), Positives = 64/84 (76%)
Frame = +1 / -2
Query: 376 FSALLPHSTK*RPMTISTAPMIPPV*SWSPRMAEAMTATATVCTGWKTAVKSGPPLSMHQ 555
FS+LLPH T+*RPM I AP IPP *+ SPRM +A+ ATA VCTGW TA +GPPLSMH
Sbjct: 258 FSSLLPHRTR*RPMIIRIAPNIPPR*NCSPRMIDAIIATAIVCTGW*TATNTGPPLSMHH 79
Query: 556 ICRANATPDATRPAYRMVKSSPPE 627
I A P+AT PAYRMVKSSPPE
Sbjct: 78 I*TEKAIPEATNPAYRMVKSSPPE 7
>gb|BQ700309.1|BQ700309 NXRV103_H06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV103_H06 5' similar to Arabidopsis thaliana
sequence At1g75500 nodulin-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 748
Score = 134 bits (288), Expect = 5e-031
Identities = 56/87 (64%), Positives = 65/87 (74%)
Frame = -3 / +1
Query: 632 VRSGGELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMASAILGDQL 453
+ SGG LFTILYAG VASG+AF+LQIWCIDRGGP+F AV+QPVQT+A A+MAS ILG+Q
Sbjct: 4 IHSGG*LFTILYAGFVASGIAFSLQIWCIDRGGPVFVAVYQPVQTIAGAIMASIILGEQF 183
Query: 452 YTXXXXXXXXXXXXLYFVLWGKSAEKK 372
Y LY VLWGKS EK+
Sbjct: 184 YLGGIFGAILIIIGLYLVLWGKSEEKR 264
Score = 128 bits (274), Expect = 4e-029
Identities = 55/84 (65%), Positives = 62/84 (73%)
Frame = +1 / -3
Query: 376 FSALLPHSTK*RPMTISTAPMIPPV*SWSPRMAEAMTATATVCTGWKTAVKSGPPLSMHQ 555
FS+LLPH T+*RPM I AP IPP *+ SPRM +A+ A A VCTGW TA +GPPLSMH
Sbjct: 260 FSSLLPHRTR*RPMIIRIAPNIPPR*NCSPRMIDAIIAPAIVCTGW*TATNTGPPLSMHH 81
Query: 556 ICRANATPDATRPAYRMVKSSPPE 627
I A P+AT PAYRMVKS PPE
Sbjct: 80 I*SEKAIPEATNPAYRMVKSYPPE 9
>gb|BX250854.1|BX250854 BX250854 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP042B07, mRNA sequence
Length = 605
Score = 127 bits (271), Expect = 1e-028
Identities = 51/78 (65%), Positives = 61/78 (78%)
Frame = -3 / -2
Query: 605 ILYAGLVASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMASAILGDQLYTXXXXXXX 426
+LYAG+VASG+AF++QIWCIDRGGP+F AV+QPVQT+AVAVMAS ILG+Q Y
Sbjct: 604 VLYAGIVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAVMASIILGEQFYLGGIIGAI 425
Query: 425 XXXXXLYFVLWGKSAEKK 372
LYFVLWGKS EK+
Sbjct: 424 LIIAGLYFVLWGKSEEKR 371
Score = 105 bits (224), Expect = 3e-022
Identities = 45/76 (59%), Positives = 55/76 (72%)
Frame = +1 / +3
Query: 376 FSALLPHSTK*RPMTISTAPMIPPV*SWSPRMAEAMTATATVCTGWKTAVKSGPPLSMHQ 555
FS+L PHSTK RP + AP+IPP *+ SPR+ +A+TATA V TGW TA +GPPLS+H
Sbjct: 375 FSSLFPHSTKYRPAIMRIAPIIPPR*NCSPRIMDAITATAIV*TGWYTATNTGPPLSIHH 554
Query: 556 ICRANATPDATRPAYR 603
I A P+AT PAYR
Sbjct: 555 IWTEKAMPEATIPAYR 602
>gb|CF390172.1|CF390172 RTDR2_12_A06.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_12_A06_A021 5', mRNA
sequence
Length = 550
Score = 121 bits (258), Expect = 7e-027
Identities = 49/76 (64%), Positives = 58/76 (76%)
Frame = -3 / -3
Query: 599 YAGLVASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMASAILGDQLYTXXXXXXXXX 420
YAG+VASG+AF++QIWCIDRGGP+F AV+QPVQT+AVAVMAS ILG+Q Y
Sbjct: 548 YAGIVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAVMASIILGEQFYLGGIIGAILI 369
Query: 419 XXXLYFVLWGKSAEKK 372
LY VLWGKS EK+
Sbjct: 368 IAGLYLVLWGKSEEKR 321
Score = 103 bits (219), Expect = 2e-021
Identities = 44/75 (58%), Positives = 54/75 (72%)
Frame = +1 / +1
Query: 376 FSALLPHSTK*RPMTISTAPMIPPV*SWSPRMAEAMTATATVCTGWKTAVKSGPPLSMHQ 555
FS+L PHSTK RP + AP+IPP *+ SPR+ +A+TATA V TGW TA +GPPLS+H
Sbjct: 325 FSSLFPHSTKYRPAIMRIAPIIPPR*NCSPRIMDAITATAIV*TGWYTATNTGPPLSIHH 504
Query: 556 ICRANATPDATRPAY 600
I A P+AT PAY
Sbjct: 505 IWTEKAMPEATIPAY 549
>gb|BX680621.1|BX680621 BX680621 RS Pinus pinaster cDNA clone RS46A04, mRNA sequence
Length = 606
Score = 116 bits (249), Expect = 1e-025
Identities = 44/60 (73%), Positives = 54/60 (90%)
Frame = -3 / +2
Query: 689 LLQFLAIAAFTEEDLSRWKVRSGGELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQ 510
++QFLAIAAF E D S WK+ SGGELFT+LYAG+VASG+AF++QIWCIDRGGP+F AV+Q
Sbjct: 425 IIQFLAIAAFFERDPSHWKMHSGGELFTVLYAGIVASGIAFSVQIWCIDRGGPVFVAVYQ 604
>gb|BQ700429.1|BQ700429 NXRV105_E11_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV105_E11 5' similar to Arabidopsis thaliana
sequence At1g75500 nodulin-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 247
Score = 116 bits (248), Expect = 2e-025
Identities = 45/61 (73%), Positives = 54/61 (88%)
Frame = -3 / +2
Query: 632 VRSGGELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMASAILGDQL 453
+ SG LFTILYAG VASG+AF++QIWCIDRGGP+F AV+QPVQT+AVA+MAS ILG+Q
Sbjct: 2 IHSGRXLFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAIMASIILGEQF 181
Query: 452 Y 450
Y
Sbjct: 182 Y 184
>gb|BX253712.1|BX253712 BX253712 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP087C12, mRNA sequence
Length = 528
Score = 113 bits (241), Expect = 1e-024
Identities = 46/71 (64%), Positives = 54/71 (76%)
Frame = -3 / +3
Query: 584 ASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMASAILGDQLYTXXXXXXXXXXXXLY 405
ASG+AF++QIWCIDRGGP+F AV+QPVQT+AVAVMAS ILG+Q Y LY
Sbjct: 3 ASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAVMASIILGEQFYLGGIIGAILIIAGLY 182
Query: 404 FVLWGKSAEKK 372
FVLWGKS EK+
Sbjct: 183 FVLWGKSEEKR 215
>gb|BM427993.1|BM427993 NXRV_007_C09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_007_C09 5' similar to Arabidopsis thaliana
sequence At1g75500 nodulin-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 285
Score = 94.1 bits (199), Expect(2) = 5e-021
Identities = 36/46 (78%), Positives = 43/46 (93%)
Frame = -3 / +1
Query: 587 VASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMASAILGDQLY 450
VASG+AF++QIWCIDRGGP+F AV+QPVQT+AVAVMAS ILG+Q Y
Sbjct: 1 VASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAVMASIILGEQFY 138
Score = 26.3 bits (51), Expect(2) = 5e-021
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -3 / +3
Query: 407 YFVLWGKSAEKK 372
Y VLWGKS EK+
Sbjct: 183 YXVLWGKSEEKR 218
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 352,590,471
Number of Sequences: 355925
Number of extensions: 4890438
Number of successful extensions: 100460
Number of sequences better than 1.0e-020: 23
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 9543423165
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)