TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8616263.2.1
(509 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF132121.1|AF132121 Pinus taeda laccase (Lac3) mRNA, com... 169 1e-041
gb|BI202922.1|BI202922 NXPV_092_E06_F NXPV (Nsf Xylem Plani... 165 2e-040
gb|CF398883.1|CF398883 RTDS3_11_G12.b1_A022 Drought-stresse... 165 2e-040
gb|CO200210.1|CO200210 GEO2_6_C07.b1_A032 Root gravitropism... 165 2e-040
gb|DR089078.1|DR089078 RTAL1_6_A01.g1_A029 Roots plus added... 165 2e-040
gb|AF132126.1|AF132126 Pinus taeda laccase (Lac8) mRNA, com... 163 7e-040
gb|DR069303.1|DR069303 RTDK1_6_G04.b1_A029 Roots, dark Pinu... 161 2e-039
gb|DR069309.1|DR069309 RTDK1_6_H04.b1_A029 Roots, dark Pinu... 161 2e-039
gb|DR096343.1|DR096343 STRR1_27_H07.b1_A033 Stem Response R... 161 2e-039
gb|DR096428.1|DR096428 STRR1_27_H07.g1_A033 Stem Response R... 161 2e-039
gb|DR096502.1|DR096502 STRR1_28_H07.b1_A033 Stem Response R... 161 2e-039
gb|DR096587.1|DR096587 STRR1_28_H07.g1_A033 Stem Response R... 161 2e-039
gb|BX250308.1|BX250308 BX250308 Pinus pinaster differenciat... 160 4e-039
gb|CF478753.1|CF478753 RTWW3_15_A09.b1_A022 Well-watered lo... 160 8e-039
gb|CX713944.1|CX713944 RTPQ1_15_G09.b1_A032 Roots treated w... 160 8e-039
gb|CX713973.1|CX713973 RTPQ1_15_G09.g1_A032 Roots treated w... 160 8e-039
gb|AF132125.1|AF132125 Pinus taeda laccase (Lac7) mRNA, com... 159 2e-038
gb|AF132119.1|AF132119 Pinus taeda laccase (Lac1) mRNA, com... 158 3e-038
gb|BE758649.1|BE758649 NXCI_069_F01_F NXCI (Nsf Xylem Compr... 157 4e-038
gb|BQ634755.1|BQ634755 NXRV072_H03_F NXRV (Nsf Xylem Root w... 157 4e-038
gb|AF132124.1|AF132124 Pinus taeda laccase (Lac6) mRNA, com... 157 6e-038
gb|BX251790.1|BX251790 BX251790 Pinus pinaster differenciat... 156 1e-037
gb|BX253281.1|BX253281 BX253281 Pinus pinaster differenciat... 156 1e-037
gb|BX253355.1|BX253355 BX253355 Pinus pinaster differenciat... 156 1e-037
gb|BE187346.1|BE187346 NXNV_162_G09_F Nsf Xylem Normal wood... 156 1e-037
gb|CO361823.1|CO361823 NDL2_7_G07.b1_A029 Needles control 2... 156 1e-037
gb|AF132123.1|AF132123 Pinus taeda laccase (Lac5) mRNA, com... 156 1e-037
gb|CV035707.1|CV035707 RTNACL1_41_H12.g1_A029 Roots plus ad... 153 7e-037
gb|BE496367.1|BE496367 NXCI_017_A06_F NXCI (Nsf Xylem Compr... 153 1e-036
gb|CO362368.1|CO362368 RTK1_3_D05.b1_A029 Roots minus potas... 145 1e-036
gb|AW985448.1|AW985448 NXNV_136_F10_F Nsf Xylem Normal wood... 152 1e-036
gb|BF010770.1|BF010770 NXCI_068_D11_F NXCI (Nsf Xylem Compr... 149 1e-035
gb|CR354657.1|CR354657 CR354657 Pinus pinaster differenciat... 147 4e-035
gb|CO198641.1|CO198641 GEO1_15_G11.b1_A029 Root gravitropis... 147 6e-035
gb|DR012672.1|DR012672 HEAT1_14_G05.b1_A029 Root at 37 C fo... 147 6e-035
gb|DR384963.1|DR384963 RTHG1_5_F06.g1_A029 Roots plus added... 147 6e-035
gb|DR071515.1|DR071515 RTDK1_20_H07.b1_A029 Roots, dark Pin... 144 3e-034
gb|CO200292.1|CO200292 GEO2_6_C07.g1_A032 Root gravitropism... 144 4e-034
gb|DR014195.1|DR014195 HEAT1_24_A10.b1_A029 Root at 37 C fo... 143 8e-034
gb|DR014270.1|DR014270 HEAT1_24_A10.g1_A029 Root at 37 C fo... 143 8e-034
gb|CF669991.1|CF669991 RTCNT1_47_H12.b1_A029 Root control P... 135 1e-033
gb|BE458054.1|BE458054 NXCI_005_C10_F NXCI (Nsf Xylem Compr... 142 1e-033
gb|DR178232.1|DR178232 RTMNUT1_10_F05.b1_A029 Roots minus m... 142 1e-033
gb|DR742974.1|DR742974 RTCU1_8_E04.g2_A029 Roots plus added... 142 1e-033
gb|BE762117.1|BE762117 NXCI_081_E04_F NXCI (Nsf Xylem Compr... 140 7e-033
gb|CF671511.1|CF671511 RTCNT1_57_C11.g1_A029 Root control P... 140 7e-033
gb|CF477652.1|CF477652 RTWW3_9_B07.b1_A022 Well-watered lob... 139 1e-032
gb|CF474922.1|CF474922 RTWW2_8_G02.g1_A021 Well-watered lob... 136 9e-032
gb|BX254102.1|BX254102 BX254102 Pinus pinaster differenciat... 136 1e-031
gb|BQ701805.1|BQ701805 NXSI_120_G05_F NXSI (Nsf Xylem Side ... 136 1e-031
gb|AW869838.1|AW869838 NXNV_122_A12_F Nsf Xylem Normal wood... 135 2e-031
gb|BE758635.1|BE758635 NXCI_069_D05_F NXCI (Nsf Xylem Compr... 135 2e-031
gb|CR393471.1|CR393471 CR393471 RN Pinus pinaster cDNA clon... 135 2e-031
gb|CR394206.1|CR394206 CR394206 RN Pinus pinaster cDNA clon... 135 2e-031
gb|AI920136.1|AI920136 1666 Pine Lambda Zap Xylem library P... 95 1e-030
dbj|BD224358.1| Materials and methods for the modification ... 131 4e-030
gb|BE996791.1|BE996791 NXCI_101_B03_F NXCI (Nsf Xylem Compr... 130 6e-030
gb|CO366300.1|CO366300 RTK1_27_B12.b1_A029 Roots minus pota... 130 6e-030
gb|DR060986.1|DR060986 RTNIT1_31_G11.b1_A029 Roots minus ni... 130 6e-030
gb|DR079949.1|DR079949 RTFEPL1_19_A07.b1_A029 Roots plus ad... 130 6e-030
gb|DR116909.1|DR116909 RTMG1_3_C03.g1_A029 Roots minus magn... 130 6e-030
gb|AF132122.1|AF132122 Pinus taeda laccase (Lac4) mRNA, com... 130 6e-030
gb|AI812943.1|AI812943 22G11 Pine Lambda Zap Xylem library ... 120 7e-030
dbj|BD224418.1| Materials and methods for the modification ... 129 1e-029
gb|BQ698145.1|BQ698145 NXPV_067_A09_F NXPV (Nsf Xylem Plani... 129 1e-029
gb|CD028514.1|CD028514 NXSI_119_H02_F NXSI (Nsf Xylem Side ... 129 1e-029
gb|CF478305.1|CF478305 RTWW3_18_E06.b1_A022 Well-watered lo... 129 1e-029
gb|BX252529.1|BX252529 BX252529 Pinus pinaster differenciat... 128 3e-029
gb|CF398957.1|CF398957 RTDS3_11_G12.g1_A022 Drought-stresse... 128 3e-029
gb|BX682255.2|BX682255 BX682255 Pinus pinaster differenciat... 128 3e-029
gb|CX646584.1|CX646584 COLD1_10_F02.b1_A029 Root cold Pinus... 128 3e-029
gb|BG275920.1|BG275920 NXSI_149_E10_F NXSI (Nsf Xylem Side ... 127 5e-029
gb|CO158627.1|CO158627 FLD1_8_D07.b1_A029 Root flooded Pinu... 127 7e-029
gb|DR102424.1|DR102424 STRR1_81_B02.b1_A033 Stem Response R... 126 1e-028
gb|DR166052.1|DR166052 RTPHOS1_9_B07.b2_A029 Roots minus ph... 126 1e-028
gb|BF220791.1|BF220791 NXCI_150_H07_F NXCI (Nsf Xylem Compr... 125 2e-028
gb|AW289657.1|AW289657 NXNV003D03F Nsf Xylem Normal wood Ve... 125 3e-028
gb|CD028198.1|CD028198 NXNV003D03 Nsf Xylem Normal wood Ver... 125 3e-028
gb|CF474140.1|CF474140 RTWW2_17_D03.b1_A021 Well-watered lo... 125 3e-028
gb|CF474525.1|CF474525 RTWW2_9_H03.b1_A021 Well-watered lob... 125 3e-028
gb|CX651998.1|CX651998 COLD1_56_E11.b1_A029 Root cold Pinus... 125 3e-028
gb|CX652066.1|CX652066 COLD1_56_E11.g1_A029 Root cold Pinus... 125 3e-028
gb|BX250000.1|BX250000 BX250000 Pinus pinaster differenciat... 124 3e-028
gb|AI725182.1|AI725182 1081 PtIFG2 Pinus taeda cDNA clone 9... 124 5e-028
gb|AW289555.1|AW289555 NXNV002H11F Nsf Xylem Normal wood Ve... 124 5e-028
gb|BQ702308.1|BQ702308 NXSI_127_C02_F NXSI (Nsf Xylem Side ... 124 5e-028
gb|CD028178.1|CD028178 NXNV002H11 Nsf Xylem Normal wood Ver... 124 5e-028
gb|CX647335.1|CX647335 COLD1_15_H08.b1_A029 Root cold Pinus... 124 5e-028
gb|DR178921.1|DR178921 RTMNUT1_14_G02.g1_A029 Roots minus m... 124 5e-028
gb|AF132120.1|AF132120 Pinus taeda laccase (Lac2) mRNA, com... 124 5e-028
dbj|BD224536.1| Materials and methods for the modification ... 124 5e-028
gb|AW290117.1|AW290117 NXNV010D09F Nsf Xylem Normal wood Ve... 123 7e-028
gb|CD026741.1|CD026741 NXNV010D09 Nsf Xylem Normal wood Ver... 123 7e-028
gb|DR023255.1|DR023255 STRS1_56_A07.g1_A034 Shoot tip pitch... 123 9e-028
gb|DR099105.1|DR099105 STRR1_53_D12.b1_A033 Stem Response R... 123 9e-028
gb|DR100018.1|DR100018 STRR1_61_B02.b1_A033 Stem Response R... 123 9e-028
gb|DR071593.1|DR071593 RTDK1_20_H07.g1_A029 Roots, dark Pin... 122 2e-027
gb|DR080004.1|DR080004 RTFEPL1_19_A07.g1_A029 Roots plus ad... 121 3e-027
gb|BQ700010.1|BQ700010 NXRV133_A09_F NXRV (Nsf Xylem Root w... 120 6e-027
gb|BX250739.1|BX250739 BX250739 Pinus pinaster differenciat... 119 1e-026
gb|BF169952.1|BF169952 NXCI_122_H06_F NXCI (Nsf Xylem Compr... 119 1e-026
gb|BF517037.1|BF517037 NXSI_008_D10_F NXSI (Nsf Xylem Side ... 119 1e-026
gb|DR024283.1|DR024283 STRS1_63_G03.g1_A034 Shoot tip pitch... 119 2e-026
gb|CF473790.1|CF473790 RTWW2_4_G02.g1_A021 Well-watered lob... 117 6e-026
gb|BF610385.1|BF610385 NXSI_049_H12_F NXSI (Nsf Xylem Side ... 116 1e-025
gb|BQ633762.1|BQ633762 NXRV060_D11_F NXRV (Nsf Xylem Root w... 116 1e-025
gb|AW626589.1|AW626589 NXNV067B05 Nsf Xylem Normal wood Ver... 69 2e-025
gb|BF516721.1|BF516721 NXSI_002_E10_F NXSI (Nsf Xylem Side ... 115 2e-025
gb|DR070142.1|DR070142 RTDK1_11_C01.g1_A029 Roots, dark Pin... 111 6e-025
dbj|BD224459.1| Materials and methods for the modification ... 112 1e-024
dbj|BD224537.1| Materials and methods for the modification ... 112 2e-024
gb|BX249680.1|BX249680 BX249680 Pinus pinaster differenciat... 111 3e-024
gb|BF777637.1|BF777637 NXSI_070_G12_F NXSI (Nsf Xylem Side ... 111 3e-024
gb|BF610261.1|BF610261 NXSI_057_B03_F NXSI (Nsf Xylem Side ... 111 5e-024
gb|BQ702927.1|BQ702927 NXSI_134_C10_F NXSI (Nsf Xylem Side ... 111 5e-024
gb|DR178837.1|DR178837 RTMNUT1_14_G02.b1_A029 Roots minus m... 111 5e-024
gb|BQ699385.1|BQ699385 NXRV127_B08_F NXRV (Nsf Xylem Root w... 110 7e-024
gb|AW626664.1|AW626664 NXNV068B04 Nsf Xylem Normal wood Ver... 108 2e-023
gb|DR093150.1|DR093150 STRR1_6_H12.b1_A033 Stem Response Re... 106 1e-022
gb|AI812515.1|AI812515 12B4 Pine Lambda Zap Xylem library P... 105 2e-022
gb|BM428608.1|BM428608 NXRV_019_C04_F NXRV (Nsf Xylem Root ... 105 2e-022
gb|CF398272.1|CF398272 RTDS3_24_F12.g1_A022 Drought-stresse... 103 1e-021
gb|AI919938.1|AI919938 1468 Pine Lambda Zap Xylem library P... 63 1e-021
gb|BQ107883.1|BQ107883 NXLV101_H12_F NXLV (Nsf Xylem Late w... 102 2e-021
gb|AI920039.1|AI920039 1569 Pine Lambda Zap Xylem library P... 84 7e-021
>gb|AF132121.1|AF132121 Pinus taeda laccase (Lac3) mRNA, complete cds
Length = 2134
Score = 169 bits (364), Expect = 1e-041
Identities = 62/82 (75%), Positives = 71/82 (86%)
Frame = -1 / +2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
+P +DP FNLVDP +RNTVGVP+GGWVAIRF ADNPGVWFMHCHLE HT+WGL+MAW+V
Sbjct: 1568 NPRSDPKHFNLVDPPQRNTVGVPSGGWVAIRFRADNPGVWFMHCHLEVHTSWGLKMAWVV 1747
Query: 329 LDGSLPHQKLLPPPSDLPKC*L 264
LDG+ P+ L PPPSDLP C*L
Sbjct: 1748 LDGNAPNHSLPPPPSDLPAC*L 1813
Score = 100 bits (214), Expect = 5e-021
Identities = 46/77 (59%), Positives = 50/77 (64%)
Frame = +1 / -2
Query: 277 GKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTPTV 456
G+S+GGG G PS T HAI P +V SK QCMNQTPGLSAR R+AT PP GTPTV
Sbjct: 1800 GRSEGGGGRE*FGAFPSRTTHAIFNPQLV*TSK*QCMNQTPGLSARNRIATQPPLGTPTV 1621
Query: 457 LRSTGSTRLNLDGSLTG 507
GSTRL GS G
Sbjct: 1620 FL*GGSTRLKCLGSERG 1570
>gb|BI202922.1|BI202922 NXPV_092_E06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_092_E06 5' similar to Arabidopsis
thaliana sequence At5g03260 laccase (diphenol
oxidase)-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 535
Score = 165 bits (355), Expect = 2e-040
Identities = 63/87 (72%), Positives = 69/87 (79%)
Frame = -1 / +2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
DP DP+KFNLVDP ERNTVGVP GGW IRF ADNPGVWFMHCHLE HTTWGL+MA+LV
Sbjct: 104 DPKKDPAKFNLVDPPERNTVGVPTGGWTVIRFRADNPGVWFMHCHLEVHTTWGLKMAFLV 283
Query: 329 LDGSLPHQKLLPPPSDLPKC*LDSSSI 249
+G P Q +LPPP DLP+C* S I
Sbjct: 284 ENGHGPEQSILPPPKDLPQC*SIHSEI 364
Score = 112 bits (239), Expect = 2e-024
Identities = 49/79 (62%), Positives = 53/79 (67%)
Frame = +1 / -2
Query: 271 HLGKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTP 450
H G+S GGG G P ST +AI P VVC S+ QCMNQTPGLSA R+ PP GTP
Sbjct: 342 HWGRSFGGGRMDCSGPCPFSTRNAIFSPQVVCTSR*QCMNQTPGLSALNRITVQPPVGTP 163
Query: 451 TVLRSTGSTRLNLDGSLTG 507
TVLRS GSTRLNL GS G
Sbjct: 162 TVLRSGGSTRLNLAGSFLG 106
>gb|CF398883.1|CF398883 RTDS3_11_G12.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_11_G12_A022 3', mRNA sequence
Length = 640
Score = 165 bits (355), Expect = 2e-040
Identities = 63/87 (72%), Positives = 69/87 (79%)
Frame = -1 / +1
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
DP DP+KFNLVDP ERNTVGVP GGW IRF ADNPGVWFMHCHLE HTTWGL+MA+LV
Sbjct: 67 DPKKDPAKFNLVDPPERNTVGVPTGGWTVIRFRADNPGVWFMHCHLEVHTTWGLKMAFLV 246
Query: 329 LDGSLPHQKLLPPPSDLPKC*LDSSSI 249
+G P Q +LPPP DLP+C* S I
Sbjct: 247 ENGHGPEQSILPPPKDLPQC*SIHSEI 327
Score = 112 bits (239), Expect = 2e-024
Identities = 49/79 (62%), Positives = 53/79 (67%)
Frame = +1 / -3
Query: 271 HLGKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTP 450
H G+S GGG G P ST +AI P VVC S+ QCMNQTPGLSA R+ PP GTP
Sbjct: 305 HWGRSFGGGRMDCSGPCPFSTRNAIFSPQVVCTSR*QCMNQTPGLSALNRITVQPPVGTP 126
Query: 451 TVLRSTGSTRLNLDGSLTG 507
TVLRS GSTRLNL GS G
Sbjct: 125 TVLRSGGSTRLNLAGSFLG 69
>gb|CO200210.1|CO200210 GEO2_6_C07.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_C07_A032 3', mRNA sequence
Length = 851
Score = 165 bits (355), Expect = 2e-040
Identities = 63/87 (72%), Positives = 69/87 (79%)
Frame = -1 / +1
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
DP DP+KFNLVDP ERNTVGVP GGW IRF ADNPGVWFMHCHLE HTTWGL+MA+LV
Sbjct: 256 DPKKDPAKFNLVDPPERNTVGVPTGGWTVIRFRADNPGVWFMHCHLEVHTTWGLKMAFLV 435
Query: 329 LDGSLPHQKLLPPPSDLPKC*LDSSSI 249
+G P Q +LPPP DLP+C* S I
Sbjct: 436 ENGHGPEQSILPPPKDLPQC*SIHSEI 516
Score = 112 bits (239), Expect = 2e-024
Identities = 49/79 (62%), Positives = 53/79 (67%)
Frame = +1 / -1
Query: 271 HLGKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTP 450
H G+S GGG G P ST +AI P VVC S+ QCMNQTPGLSA R+ PP GTP
Sbjct: 494 HWGRSFGGGRMDCSGPCPFSTRNAIFSPQVVCTSR*QCMNQTPGLSALNRITVQPPVGTP 315
Query: 451 TVLRSTGSTRLNLDGSLTG 507
TVLRS GSTRLNL GS G
Sbjct: 314 TVLRSGGSTRLNLAGSFLG 258
>gb|DR089078.1|DR089078 RTAL1_6_A01.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_6_A01_A029 5', mRNA sequence
Length = 749
Score = 165 bits (355), Expect = 2e-040
Identities = 63/87 (72%), Positives = 69/87 (79%)
Frame = -1 / -3
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
DP DP+KFNLVDP ERNTVGVP GGW IRF ADNPGVWFMHCHLE HTTWGL+MA+LV
Sbjct: 498 DPKKDPAKFNLVDPPERNTVGVPTGGWTVIRFRADNPGVWFMHCHLEVHTTWGLKMAFLV 319
Query: 329 LDGSLPHQKLLPPPSDLPKC*LDSSSI 249
+G P Q +LPPP DLP+C* S I
Sbjct: 318 ENGHGPEQSILPPPKDLPQC*SIHSEI 238
Score = 112 bits (239), Expect = 2e-024
Identities = 49/79 (62%), Positives = 53/79 (67%)
Frame = +1 / +2
Query: 271 HLGKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTP 450
H G+S GGG G P ST +AI P VVC S+ QCMNQTPGLSA R+ PP GTP
Sbjct: 260 HWGRSFGGGRMDCSGPCPFSTRNAIFSPQVVCTSR*QCMNQTPGLSALNRITVQPPVGTP 439
Query: 451 TVLRSTGSTRLNLDGSLTG 507
TVLRS GSTRLNL GS G
Sbjct: 440 TVLRSGGSTRLNLAGSFLG 496
>gb|AF132126.1|AF132126 Pinus taeda laccase (Lac8) mRNA, complete cds
Length = 1924
Score = 163 bits (351), Expect = 7e-040
Identities = 61/81 (75%), Positives = 66/81 (81%)
Frame = -1 / +1
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
DP DP+ FNLVDP ERNTVGVP GGW IRF ADNPGVWFMHCHLE HTTWGL+MA+LV
Sbjct: 1543 DPNTDPASFNLVDPPERNTVGVPTGGWTVIRFRADNPGVWFMHCHLEVHTTWGLKMAFLV 1722
Query: 329 LDGSLPHQKLLPPPSDLPKC* 267
+G P Q +LPPPSD PKC*
Sbjct: 1723 ENGDGPDQSMLPPPSDFPKC* 1785
Score = 119 bits (255), Expect = 1e-026
Identities = 52/79 (65%), Positives = 57/79 (72%)
Frame = +1 / -3
Query: 271 HLGKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTP 450
HLGKS GGG+ G P ST +AI PHVVC S+ QC+NQTPGLSA KRM PP GTP
Sbjct: 1781 HLGKSLGGGNMD*SGPSPFSTRNAIFNPHVVCTSR*QCINQTPGLSALKRMTVQPPVGTP 1602
Query: 451 TVLRSTGSTRLNLDGSLTG 507
TVLRS GSTRL L GS+ G
Sbjct: 1601 TVLRSGGSTRLKLAGSVLG 1545
>gb|DR069303.1|DR069303 RTDK1_6_G04.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_6_G04_A029 3', mRNA sequence
Length = 912
Score = 161 bits (347), Expect = 2e-039
Identities = 59/77 (76%), Positives = 66/77 (85%)
Frame = -1 / +3
Query: 497 DPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVLDGS 318
D KFNLVDPVERNTVGVP+GGWVA+RF ADNPGVWFMHCHLE HT+WGL+MAW+V +G
Sbjct: 393 DSPKFNLVDPVERNTVGVPSGGWVALRFRADNPGVWFMHCHLEVHTSWGLKMAWIVKNGK 572
Query: 317 LPHQKLLPPPSDLPKC* 267
P Q +LPPP DLP C*
Sbjct: 573 GPSQSILPPPPDLPPC* 623
Score = 103 bits (220), Expect = 8e-022
Identities = 46/74 (62%), Positives = 48/74 (64%)
Frame = +1 / -3
Query: 277 GKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTPTV 456
G+S GGG W G LP T AI PH V SKWQC+NQTPGLSA AT PP GTPTV
Sbjct: 613 GRSGGGGRIDWEGPLPFFTIQAIFSPHDV*TSKWQCINQTPGLSALNLKATQPPEGTPTV 434
Query: 457 LRSTGSTRLNLDGS 498
STGSTRLN S
Sbjct: 433 FLSTGSTRLNFGES 392
>gb|DR069309.1|DR069309 RTDK1_6_H04.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_6_H04_A029 3', mRNA sequence
Length = 790
Score = 161 bits (347), Expect = 2e-039
Identities = 59/77 (76%), Positives = 66/77 (85%)
Frame = -1 / +2
Query: 497 DPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVLDGS 318
D KFNLVDPVERNTVGVP+GGWVA+RF ADNPGVWFMHCHLE HT+WGL+MAW+V +G
Sbjct: 272 DSPKFNLVDPVERNTVGVPSGGWVALRFRADNPGVWFMHCHLEVHTSWGLKMAWIVKNGK 451
Query: 317 LPHQKLLPPPSDLPKC* 267
P Q +LPPP DLP C*
Sbjct: 452 GPSQSILPPPPDLPPC* 502
Score = 103 bits (220), Expect = 8e-022
Identities = 46/74 (62%), Positives = 48/74 (64%)
Frame = +1 / -2
Query: 277 GKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTPTV 456
G+S GGG W G LP T AI PH V SKWQC+NQTPGLSA AT PP GTPTV
Sbjct: 492 GRSGGGGRIDWEGPLPFFTIQAIFSPHDV*TSKWQCINQTPGLSALNLKATQPPEGTPTV 313
Query: 457 LRSTGSTRLNLDGS 498
STGSTRLN S
Sbjct: 312 FLSTGSTRLNFGES 271
>gb|DR096343.1|DR096343 STRR1_27_H07.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_27_H07_A033 3', mRNA sequence
Length = 720
Score = 161 bits (347), Expect = 2e-039
Identities = 59/77 (76%), Positives = 66/77 (85%)
Frame = -1 / +3
Query: 497 DPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVLDGS 318
D KFNLVDPVERNTVGVP+GGWVA+RF ADNPGVWFMHCHLE HT+WGL+MAW+V +G
Sbjct: 189 DSPKFNLVDPVERNTVGVPSGGWVALRFRADNPGVWFMHCHLEVHTSWGLKMAWIVKNGK 368
Query: 317 LPHQKLLPPPSDLPKC* 267
P Q +LPPP DLP C*
Sbjct: 369 GPSQSILPPPPDLPPC* 419
Score = 103 bits (220), Expect = 8e-022
Identities = 46/74 (62%), Positives = 48/74 (64%)
Frame = +1 / -3
Query: 277 GKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTPTV 456
G+S GGG W G LP T AI PH V SKWQC+NQTPGLSA AT PP GTPTV
Sbjct: 409 GRSGGGGRIDWEGPLPFFTIQAIFSPHDV*TSKWQCINQTPGLSALNLKATQPPEGTPTV 230
Query: 457 LRSTGSTRLNLDGS 498
STGSTRLN S
Sbjct: 229 FLSTGSTRLNFGES 188
>gb|DR096428.1|DR096428 STRR1_27_H07.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_27_H07_A033 5', mRNA sequence
Length = 692
Score = 161 bits (347), Expect = 2e-039
Identities = 59/77 (76%), Positives = 66/77 (85%)
Frame = -1 / +1
Query: 497 DPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVLDGS 318
D KFNLVDPVERNTVGVP+GGWVA+RF ADNPGVWFMHCHLE HT+WGL+MAW+V +G
Sbjct: 382 DSPKFNLVDPVERNTVGVPSGGWVALRFRADNPGVWFMHCHLEVHTSWGLKMAWIVKNGK 561
Query: 317 LPHQKLLPPPSDLPKC* 267
P Q +LPPP DLP C*
Sbjct: 562 GPSQSILPPPPDLPPC* 612
Score = 103 bits (220), Expect = 8e-022
Identities = 46/74 (62%), Positives = 48/74 (64%)
Frame = +1 / -1
Query: 277 GKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTPTV 456
G+S GGG W G LP T AI PH V SKWQC+NQTPGLSA AT PP GTPTV
Sbjct: 602 GRSGGGGRIDWEGPLPFFTIQAIFSPHDV*TSKWQCINQTPGLSALNLKATQPPEGTPTV 423
Query: 457 LRSTGSTRLNLDGS 498
STGSTRLN S
Sbjct: 422 FLSTGSTRLNFGES 381
>gb|DR096502.1|DR096502 STRR1_28_H07.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_28_H07_A033 3', mRNA sequence
Length = 744
Score = 161 bits (347), Expect = 2e-039
Identities = 59/77 (76%), Positives = 66/77 (85%)
Frame = -1 / +3
Query: 497 DPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVLDGS 318
D KFNLVDPVERNTVGVP+GGWVA+RF ADNPGVWFMHCHLE HT+WGL+MAW+V +G
Sbjct: 213 DSPKFNLVDPVERNTVGVPSGGWVALRFRADNPGVWFMHCHLEVHTSWGLKMAWIVKNGK 392
Query: 317 LPHQKLLPPPSDLPKC* 267
P Q +LPPP DLP C*
Sbjct: 393 GPSQSILPPPPDLPPC* 443
Score = 103 bits (220), Expect = 8e-022
Identities = 46/74 (62%), Positives = 48/74 (64%)
Frame = +1 / -3
Query: 277 GKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTPTV 456
G+S GGG W G LP T AI PH V SKWQC+NQTPGLSA AT PP GTPTV
Sbjct: 433 GRSGGGGRIDWEGPLPFFTIQAIFSPHDV*TSKWQCINQTPGLSALNLKATQPPEGTPTV 254
Query: 457 LRSTGSTRLNLDGS 498
STGSTRLN S
Sbjct: 253 FLSTGSTRLNFGES 212
>gb|DR096587.1|DR096587 STRR1_28_H07.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_28_H07_A033 5', mRNA sequence
Length = 771
Score = 161 bits (347), Expect = 2e-039
Identities = 59/77 (76%), Positives = 66/77 (85%)
Frame = -1 / +3
Query: 497 DPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVLDGS 318
D KFNLVDPVERNTVGVP+GGWVA+RF ADNPGVWFMHCHLE HT+WGL+MAW+V +G
Sbjct: 381 DSPKFNLVDPVERNTVGVPSGGWVALRFRADNPGVWFMHCHLEVHTSWGLKMAWIVKNGK 560
Query: 317 LPHQKLLPPPSDLPKC* 267
P Q +LPPP DLP C*
Sbjct: 561 GPSQSILPPPPDLPPC* 611
Score = 103 bits (220), Expect = 8e-022
Identities = 46/74 (62%), Positives = 48/74 (64%)
Frame = +1 / -3
Query: 277 GKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTPTV 456
G+S GGG W G LP T AI PH V SKWQC+NQTPGLSA AT PP GTPTV
Sbjct: 601 GRSGGGGRIDWEGPLPFFTIQAIFSPHDV*TSKWQCINQTPGLSALNLKATQPPEGTPTV 422
Query: 457 LRSTGSTRLNLDGS 498
STGSTRLN S
Sbjct: 421 FLSTGSTRLNFGES 380
>gb|BX250308.1|BX250308 BX250308 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP035B10 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 710
Score = 160 bits (345), Expect = 4e-039
Identities = 60/86 (69%), Positives = 68/86 (79%)
Frame = -1 / +3
Query: 497 DPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVLDGS 318
D KFNL+DPVERNT+GVP GGW A+RF ADNPGVWFMHCHLE HT+WGL+MAW+V DG
Sbjct: 369 DAPKFNLIDPVERNTIGVPKGGWAALRFRADNPGVWFMHCHLEIHTSWGLKMAWVVKDGK 548
Query: 317 LPHQKLLPPPSDLPKC*LDSSSISIL 240
P Q L PPPSDLP C* S + +L
Sbjct: 549 GPLQSLPPPPSDLPPC*SPSFPLVVL 626
Score = 106 bits (226), Expect = 1e-022
Identities = 47/82 (57%), Positives = 52/82 (63%)
Frame = +1 / -2
Query: 256 EESNQHLGKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHP 435
+E +Q G+S+GGG G PS T HAI PH V SKWQCMN TPGLSAR A P
Sbjct: 610 KEGDQQGGRSEGGGGRD*RGPFPSFTTHAIFSPHDV*ISKWQCMNHTPGLSARNLRAAQP 431
Query: 436 PAGTPTVLRSTGSTRLNLDGSL 501
P GTP V STGS RLNL S+
Sbjct: 430 PFGTPIVFLSTGSIRLNLGASV 365
>gb|CF478753.1|CF478753 RTWW3_15_A09.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_15_A09_A022 3', mRNA sequence
Length = 573
Score = 160 bits (343), Expect = 8e-039
Identities = 58/77 (75%), Positives = 65/77 (84%)
Frame = -1 / +2
Query: 497 DPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVLDGS 318
D KFNLVDP ERNTVGVP+GGWVA+RF ADNPGVWFMHCHLE HT+WGL+MAW+V +G
Sbjct: 35 DSPKFNLVDPAERNTVGVPSGGWVALRFRADNPGVWFMHCHLEVHTSWGLKMAWIVKNGK 214
Query: 317 LPHQKLLPPPSDLPKC* 267
P Q +LPPP DLP C*
Sbjct: 215 GPSQSILPPPPDLPPC* 265
Score = 103 bits (219), Expect = 1e-021
Identities = 46/74 (62%), Positives = 47/74 (63%)
Frame = +1 / -1
Query: 277 GKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTPTV 456
G+S GGG W G LP T AI PH V SKWQCMNQTPGLSA AT PP GTPTV
Sbjct: 255 GRSGGGGRIDWEGPLPFFTIQAIFSPHDV*TSKWQCMNQTPGLSALNLKATQPPEGTPTV 76
Query: 457 LRSTGSTRLNLDGS 498
S GSTRLN S
Sbjct: 75 FLSAGSTRLNFGES 34
>gb|CX713944.1|CX713944 RTPQ1_15_G09.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_15_G09_A032 3', mRNA sequence
Length = 720
Score = 160 bits (343), Expect = 8e-039
Identities = 58/77 (75%), Positives = 65/77 (84%)
Frame = -1 / +2
Query: 497 DPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVLDGS 318
D KFNLVDP ERNTVGVP+GGWVA+RF ADNPGVWFMHCHLE HT+WGL+MAW+V +G
Sbjct: 179 DSPKFNLVDPAERNTVGVPSGGWVALRFRADNPGVWFMHCHLEVHTSWGLKMAWIVKNGK 358
Query: 317 LPHQKLLPPPSDLPKC* 267
P Q +LPPP DLP C*
Sbjct: 359 GPSQSILPPPPDLPPC* 409
Score = 103 bits (219), Expect = 1e-021
Identities = 46/74 (62%), Positives = 47/74 (63%)
Frame = +1 / -1
Query: 277 GKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTPTV 456
G+S GGG W G LP T AI PH V SKWQCMNQTPGLSA AT PP GTPTV
Sbjct: 399 GRSGGGGRIDWEGPLPFFTIQAIFSPHDV*TSKWQCMNQTPGLSALNLKATQPPEGTPTV 220
Query: 457 LRSTGSTRLNLDGS 498
S GSTRLN S
Sbjct: 219 FLSAGSTRLNFGES 178
>gb|CX713973.1|CX713973 RTPQ1_15_G09.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_15_G09_A032 5', mRNA sequence
Length = 774
Score = 160 bits (343), Expect = 8e-039
Identities = 58/77 (75%), Positives = 65/77 (84%)
Frame = -1 / +2
Query: 497 DPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVLDGS 318
D KFNLVDP ERNTVGVP+GGWVA+RF ADNPGVWFMHCHLE HT+WGL+MAW+V +G
Sbjct: 365 DSPKFNLVDPAERNTVGVPSGGWVALRFRADNPGVWFMHCHLEVHTSWGLKMAWIVKNGK 544
Query: 317 LPHQKLLPPPSDLPKC* 267
P Q +LPPP DLP C*
Sbjct: 545 GPSQSILPPPPDLPPC* 595
Score = 103 bits (219), Expect = 1e-021
Identities = 46/74 (62%), Positives = 47/74 (63%)
Frame = +1 / -1
Query: 277 GKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTPTV 456
G+S GGG W G LP T AI PH V SKWQCMNQTPGLSA AT PP GTPTV
Sbjct: 585 GRSGGGGRIDWEGPLPFFTIQAIFSPHDV*TSKWQCMNQTPGLSALNLKATQPPEGTPTV 406
Query: 457 LRSTGSTRLNLDGS 498
S GSTRLN S
Sbjct: 405 FLSAGSTRLNFGES 364
>gb|AF132125.1|AF132125 Pinus taeda laccase (Lac7) mRNA, complete cds
Length = 2088
Score = 159 bits (341), Expect = 2e-038
Identities = 61/87 (70%), Positives = 68/87 (78%)
Frame = -1 / +2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
+P DP+KFNLVDP ERNTVGVP GGW IRF ADNPGVWFMHCHLE HTTWGL+MA+LV
Sbjct: 1496 NPKKDPAKFNLVDPPERNTVGVPTGGWTVIRFRADNPGVWFMHCHLEVHTTWGLKMAFLV 1675
Query: 329 LDGSLPHQKLLPPPSDLPKC*LDSSSI 249
+G P Q +LPP DLP+C* S I
Sbjct: 1676 ENGHGPEQSILPPGKDLPQC*SIHSEI 1756
Score = 108 bits (231), Expect = 2e-023
Identities = 48/79 (60%), Positives = 52/79 (65%)
Frame = +1 / -1
Query: 271 HLGKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTP 450
H G+S GG G P ST +AI P VVC S+ QCMNQTPGLSA R+ PP GTP
Sbjct: 1734 HWGRSFPGGRMDCSGPCPFSTRNAIFSPQVVCTSR*QCMNQTPGLSALNRITVQPPVGTP 1555
Query: 451 TVLRSTGSTRLNLDGSLTG 507
TVLRS GSTRLNL GS G
Sbjct: 1554 TVLRSGGSTRLNLAGSFLG 1498
>gb|AF132119.1|AF132119 Pinus taeda laccase (Lac1) mRNA, complete cds
Length = 2048
Score = 158 bits (339), Expect = 3e-038
Identities = 58/77 (75%), Positives = 64/77 (83%)
Frame = -1 / +2
Query: 497 DPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVLDGS 318
D FNLVDPVERNT GVP+GGWVA+RF ADNPGVWFMHCHLE HT+WGL+MAW+V +G
Sbjct: 1556 DSPNFNLVDPVERNTAGVPSGGWVALRFRADNPGVWFMHCHLEVHTSWGLKMAWIVKNGK 1735
Query: 317 LPHQKLLPPPSDLPKC* 267
P Q LLPPP DLP C*
Sbjct: 1736 GPSQSLLPPPPDLPLC* 1786
>gb|BE758649.1|BE758649 NXCI_069_F01_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_069_F01 5' similar to Arabidopsis
thaliana sequence At5g60020 laccase - like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 543
Score = 157 bits (338), Expect = 4e-038
Identities = 60/86 (69%), Positives = 67/86 (77%)
Frame = -1 / +1
Query: 497 DPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVLDGS 318
D FNLVDPVERNT GVP GGW+AIRF ADNPGVWFMHCHLE HT+WGL+MAW+V +G
Sbjct: 157 DAPNFNLVDPVERNTAGVPKGGWMAIRFRADNPGVWFMHCHLEIHTSWGLKMAWIVKNGK 336
Query: 317 LPHQKLLPPPSDLPKC*LDSSSISIL 240
P Q L PPPSDLP C* D + + L
Sbjct: 337 GPLQSLPPPPSDLPPC*SDLITFNFL 414
>gb|BQ634755.1|BQ634755 NXRV072_H03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV072_H03 5' similar to Arabidopsis thaliana
sequence At5g60020 laccase - like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 706
Score = 157 bits (338), Expect = 4e-038
Identities = 60/86 (69%), Positives = 67/86 (77%)
Frame = -1 / +3
Query: 497 DPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVLDGS 318
D FNLVDPVERNT GVP GGW+AIRF ADNPGVWFMHCHLE HT+WGL+MAW+V +G
Sbjct: 273 DAPNFNLVDPVERNTAGVPKGGWMAIRFRADNPGVWFMHCHLEIHTSWGLKMAWIVKNGK 452
Query: 317 LPHQKLLPPPSDLPKC*LDSSSISIL 240
P Q L PPPSDLP C* D + + L
Sbjct: 453 GPLQSLPPPPSDLPPC*SDLITFNFL 530
>gb|AF132124.1|AF132124 Pinus taeda laccase (Lac6) mRNA, complete cds
Length = 1940
Score = 157 bits (337), Expect = 6e-038
Identities = 60/86 (69%), Positives = 66/86 (76%)
Frame = -1 / +1
Query: 497 DPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVLDGS 318
D FNLVDPVERNT GVP GGW+AIRF ADNPGVWFMHCHLE H +WGL+MAW+V DG
Sbjct: 1531 DAPNFNLVDPVERNTAGVPKGGWMAIRFRADNPGVWFMHCHLEIHKSWGLKMAWIVKDGK 1710
Query: 317 LPHQKLLPPPSDLPKC*LDSSSISIL 240
P Q L PPPSDLP C* D + + L
Sbjct: 1711 GPLQSLPPPPSDLPPC*SDLITFNFL 1788
>gb|BX251790.1|BX251790 BX251790 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP055E03 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 673
Score = 156 bits (335), Expect = 1e-037
Identities = 59/80 (73%), Positives = 64/80 (80%)
Frame = -1 / +2
Query: 497 DPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVLDGS 318
D FNL+DPVERNTVGVP GGW AIRF ADNPGVWFMHCHLE HT+WGL+MAW+V +G
Sbjct: 344 DAPNFNLIDPVERNTVGVPKGGWAAIRFRADNPGVWFMHCHLEVHTSWGLKMAWVVKNGK 523
Query: 317 LPHQKLLPPPSDLPKC*LDS 258
P Q L PPPSDLP C* S
Sbjct: 524 GPLQTLPPPPSDLPPC*SSS 583
>gb|BX253281.1|BX253281 BX253281 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP080F08 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 667
Score = 156 bits (335), Expect = 1e-037
Identities = 59/80 (73%), Positives = 64/80 (80%)
Frame = -1 / +2
Query: 497 DPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVLDGS 318
D FNL+DPVERNTVGVP GGW AIRF ADNPGVWFMHCHLE HT+WGL+MAW+V +G
Sbjct: 155 DAPNFNLIDPVERNTVGVPKGGWAAIRFRADNPGVWFMHCHLEVHTSWGLKMAWVVKNGK 334
Query: 317 LPHQKLLPPPSDLPKC*LDS 258
P Q L PPPSDLP C* S
Sbjct: 335 GPLQTLPPPPSDLPPC*SSS 394
>gb|BX253355.1|BX253355 BX253355 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP082A04 similar to L ASCORBATE OXIDASE, mRNA
sequence
Length = 680
Score = 156 bits (335), Expect = 1e-037
Identities = 59/80 (73%), Positives = 64/80 (80%)
Frame = -1 / +2
Query: 497 DPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVLDGS 318
D FNL+DPVERNTVGVP GGW AIRF ADNPGVWFMHCHLE HT+WGL+MAW+V +G
Sbjct: 344 DAPNFNLIDPVERNTVGVPKGGWAAIRFRADNPGVWFMHCHLEVHTSWGLKMAWVVKNGK 523
Query: 317 LPHQKLLPPPSDLPKC*LDS 258
P Q L PPPSDLP C* S
Sbjct: 524 GPLQTLPPPPSDLPPC*SSS 583
>gb|BE187346.1|BE187346 NXNV_162_G09_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_162_G09 5' similar to Arabidopsis thaliana
sequence At5g01190 laccase - like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 456
Score = 156 bits (335), Expect = 1e-037
Identities = 59/80 (73%), Positives = 64/80 (80%)
Frame = -1 / +2
Query: 497 DPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVLDGS 318
D FNL+DPVERNTVGVP GGW AIRF ADNPGVWFMHCHLE HT+WGL+MAW+V +G
Sbjct: 8 DAPNFNLIDPVERNTVGVPKGGWAAIRFRADNPGVWFMHCHLEVHTSWGLKMAWVVKNGK 187
Query: 317 LPHQKLLPPPSDLPKC*LDS 258
P Q L PPPSDLP C* S
Sbjct: 188 GPLQTLPPPPSDLPPC*SSS 247
>gb|CO361823.1|CO361823 NDL2_7_G07.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_7_G07_A029 3', mRNA sequence
Length = 660
Score = 156 bits (335), Expect = 1e-037
Identities = 61/87 (70%), Positives = 67/87 (77%)
Frame = -1 / +2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
DP DP+KFNLVDP ERNTVGVP GGW IRF ADNPGVWFMH HLE HTTWGL+ A+LV
Sbjct: 71 DPKKDPAKFNLVDPPERNTVGVPNGGWTVIRFRADNPGVWFMHRHLEVHTTWGLKRAFLV 250
Query: 329 LDGSLPHQKLLPPPSDLPKC*LDSSSI 249
+G P Q +LPPP DLP+C* S I
Sbjct: 251 ENGHGPEQSILPPPKDLPQC*SIHSEI 331
Score = 106 bits (227), Expect = 8e-023
Identities = 46/79 (58%), Positives = 52/79 (65%)
Frame = +1 / -1
Query: 271 HLGKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTP 450
H G+S GGG G P ST +A+ P VVC S+ +CMN TPGLSA R+ PP GTP
Sbjct: 309 HWGRSFGGGRMDCSGPCPFSTRNALFSPQVVCTSR*RCMNHTPGLSALNRITVQPPLGTP 130
Query: 451 TVLRSTGSTRLNLDGSLTG 507
TVLRS GSTRLNL GS G
Sbjct: 129 TVLRSGGSTRLNLAGSFLG 73
>gb|AF132123.1|AF132123 Pinus taeda laccase (Lac5) mRNA, complete cds
Length = 2090
Score = 156 bits (335), Expect = 1e-037
Identities = 59/80 (73%), Positives = 64/80 (80%)
Frame = -1 / +1
Query: 497 DPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVLDGS 318
D FNL+DPVERNTVGVP GGW AIRF ADNPGVWFMHCHLE HT+WGL+MAW+V +G
Sbjct: 1582 DAPNFNLIDPVERNTVGVPKGGWAAIRFRADNPGVWFMHCHLEVHTSWGLKMAWVVKNGK 1761
Query: 317 LPHQKLLPPPSDLPKC*LDS 258
P Q L PPPSDLP C* S
Sbjct: 1762 GPLQTLPPPPSDLPPC*SSS 1821
Score = 100 bits (212), Expect = 1e-020
Identities = 45/82 (54%), Positives = 51/82 (62%)
Frame = +1 / -1
Query: 256 EESNQHLGKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHP 435
+E +Q G+S+GGG G P T HAI PH V SK QCMNQTPGLSAR +A P
Sbjct: 1823 KEEDQQGGRSEGGGGRV*RGPFPFFTTHAIFSPHDV*TSK*QCMNQTPGLSARNLIAAQP 1644
Query: 436 PAGTPTVLRSTGSTRLNLDGSL 501
P GTPTV STGS RL S+
Sbjct: 1643 PLGTPTVFLSTGSMRLKFGASV 1578
>gb|CV035707.1|CV035707 RTNACL1_41_H12.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_41_H12_A029 5', mRNA sequence
Length = 756
Score = 153 bits (329), Expect = 7e-037
Identities = 57/76 (75%), Positives = 62/76 (81%)
Frame = -1 / +1
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
DP DP+ FNLVDP ERNTVGVP GGW IRF ADNPGVWFMHCHLE HTTWGL+MA+LV
Sbjct: 526 DPNTDPASFNLVDPPERNTVGVPTGGWTVIRFRADNPGVWFMHCHLEVHTTWGLKMAFLV 705
Query: 329 LDGSLPHQKLLPPPSD 282
+G P Q +LPPPSD
Sbjct: 706 ENGDGPDQSILPPPSD 753
Score = 111 bits (237), Expect = 3e-024
Identities = 49/76 (64%), Positives = 54/76 (71%)
Frame = +1 / -2
Query: 280 KSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTPTVL 459
KS GGG+ G P ST +AI PHVVC S+ QC+NQTPGLSA KRM PP GTPTVL
Sbjct: 755 KSLGGGNMD*SGPSPFSTRNAIFNPHVVCTSR*QCINQTPGLSALKRMTVQPPVGTPTVL 576
Query: 460 RSTGSTRLNLDGSLTG 507
RS GSTRL L GS+ G
Sbjct: 575 RSGGSTRLKLAGSVLG 528
>gb|BE496367.1|BE496367 NXCI_017_A06_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_017_A06 5' similar to Arabidopsis
thaliana sequence At2g38080 putative diphenol oxidase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 572
Score = 153 bits (328), Expect = 1e-036
Identities = 58/80 (72%), Positives = 63/80 (78%)
Frame = -1 / +3
Query: 497 DPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVLDGS 318
D FNL+DPVERNTVGVP GGW AIRF ADNPGVWFMHCHLE HT+WGL+MAW+V +G
Sbjct: 138 DAPNFNLIDPVERNTVGVPKGGWAAIRFRADNPGVWFMHCHLEVHTSWGLKMAWVVKNGK 317
Query: 317 LPHQKLLPPPSDLPKC*LDS 258
P Q L PPPS LP C* S
Sbjct: 318 GPLQTLPPPPSXLPPC*SSS 377
>gb|CO362368.1|CO362368 RTK1_3_D05.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_3_D05_A029 3', mRNA sequence
Length = 691
Score = 145 bits (312), Expect(2) = 1e-036
Identities = 54/73 (73%), Positives = 59/73 (80%)
Frame = -1 / +1
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
DP DP+ FNLVDP ERNTVGVP GGW IRF ADNPGVWFMHCHLE HTTWGL+MA+LV
Sbjct: 310 DPNTDPASFNLVDPPERNTVGVPTGGWTVIRFRADNPGVWFMHCHLEVHTTWGLKMAFLV 489
Query: 329 LDGSLPHQKLLPP 291
+G P Q +LPP
Sbjct: 490 ENGDGPDQSILPP 528
Score = 106 bits (226), Expect(2) = 6e-023
Identities = 46/72 (63%), Positives = 51/72 (70%)
Frame = +1 / -3
Query: 292 GGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTPTVLRSTG 471
GG+ G P ST +AI PHVVC S+ QC+NQTPGLSA KRM PP GTPTVLRS G
Sbjct: 527 GGNMD*SGPSPFSTRNAIFNPHVVCTSR*QCINQTPGLSALKRMTVQPPVGTPTVLRSGG 348
Query: 472 STRLNLDGSLTG 507
STRL L GS+ G
Sbjct: 347 STRLKLAGSVLG 312
Score = 27.2 bits (53), Expect(2) = 1e-036
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -1 / +2
Query: 296 PPPSDLPKC* 267
PPPSD PKC*
Sbjct: 524 PPPSDFPKC* 553
Score = 21.7 bits (41), Expect(2) = 6e-023
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1 / -2
Query: 271 HLGKSDGGG 297
HLGKS GGG
Sbjct: 549 HLGKSLGGG 523
>gb|AW985448.1|AW985448 NXNV_136_F10_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_136_F10 5' similar to Arabidopsis thaliana
sequence At5g01190 laccase - like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 480
Score = 152 bits (327), Expect = 1e-036
Identities = 58/80 (72%), Positives = 63/80 (78%)
Frame = -1 / +2
Query: 497 DPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVLDGS 318
D FNL+DPVERNTVGVP GGW AI F ADNPGVWFMHCHLE HT+WGL+MAW+V +G
Sbjct: 5 DAPNFNLIDPVERNTVGVPKGGWAAIIFRADNPGVWFMHCHLEVHTSWGLKMAWVVKNGK 184
Query: 317 LPHQKLLPPPSDLPKC*LDS 258
P Q L PPPSDLP C* S
Sbjct: 185 GPLQTLPPPPSDLPPC*SSS 244
>gb|BF010770.1|BF010770 NXCI_068_D11_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_068_D11 5' similar to Arabidopsis
thaliana sequence At5g60020 laccase - like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 406
Score = 149 bits (320), Expect = 1e-035
Identities = 56/79 (70%), Positives = 60/79 (75%)
Frame = -1 / +1
Query: 497 DPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVLDGS 318
D FNLVDPVERNT GVP GGW+AIRF DNPGVWFMHCH HT+WGL+MAW+V G
Sbjct: 157 DAPNFNLVDPVERNTAGVPKGGWMAIRFXXDNPGVWFMHCHXXIHTSWGLKMAWIVKXGK 336
Query: 317 LPHQKLLPPPSDLPKC*LD 261
P Q L PPPSDLP C* D
Sbjct: 337 GPLQSLPPPPSDLPPC*SD 393
>gb|CR354657.1|CR354657 CR354657 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 124E08, mRNA sequence
Length = 777
Score = 147 bits (316), Expect = 4e-035
Identities = 55/74 (74%), Positives = 60/74 (81%)
Frame = -1 / +1
Query: 497 DPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVLDGS 318
D FNL+DPVERNTVGVP GGW AIRF ADNPGVWFMHCHLE HT+WGL+MAW+V +G
Sbjct: 553 DAPNFNLIDPVERNTVGVPKGGWAAIRFRADNPGVWFMHCHLEVHTSWGLKMAWVVKNGK 732
Query: 317 LPHQKLLPPPSDLP 276
Q L PPPSDLP
Sbjct: 733 GSLQTLPPPPSDLP 774
>gb|CO198641.1|CO198641 GEO1_15_G11.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_15_G11_A029 3', mRNA sequence
Length = 465
Score = 147 bits (315), Expect = 6e-035
Identities = 57/81 (70%), Positives = 62/81 (76%)
Frame = -1 / +2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
+PV DP KFNLVDP +RNTV P GWVAIRF ADNPGVWF+HCHL+ H TWGL M +LV
Sbjct: 47 NPVKDPLKFNLVDPPQRNTVIAPVSGWVAIRFKADNPGVWFLHCHLDDHFTWGLNMVFLV 226
Query: 329 LDGSLPHQKLLPPPSDLPKC* 267
DGS P Q L PPP DLP C*
Sbjct: 227 KDGSGPLQSLEPPPRDLPMC* 289
Score = 109 bits (233), Expect = 1e-023
Identities = 49/79 (62%), Positives = 53/79 (67%)
Frame = +1 / -1
Query: 271 HLGKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTP 450
H+G+S GGGSS G LPS T + I P V +SKWQC N TPGLSA MATHP G
Sbjct: 285 HMGRSRGGGSSDCKGPLPSFTRNTIFNPQVK*SSKWQCKNHTPGLSALNLMATHPLTGAI 106
Query: 451 TVLRSTGSTRLNLDGSLTG 507
TVLR GSTRLNL GS TG
Sbjct: 105 TVLRCGGSTRLNLRGSFTG 49
>gb|DR012672.1|DR012672 HEAT1_14_G05.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_14_G05_A029 3', mRNA sequence
Length = 822
Score = 147 bits (315), Expect = 6e-035
Identities = 57/81 (70%), Positives = 62/81 (76%)
Frame = -1 / +2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
+PV DP KFNLVDP +RNTV P GWVAIRF ADNPGVWF+HCHL+ H TWGL M +LV
Sbjct: 392 NPVKDPLKFNLVDPPQRNTVIAPVSGWVAIRFKADNPGVWFLHCHLDDHFTWGLNMVFLV 571
Query: 329 LDGSLPHQKLLPPPSDLPKC* 267
DGS P Q L PPP DLP C*
Sbjct: 572 KDGSGPLQSLEPPPRDLPMC* 634
Score = 109 bits (233), Expect = 1e-023
Identities = 49/79 (62%), Positives = 53/79 (67%)
Frame = +1 / -1
Query: 271 HLGKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTP 450
H+G+S GGGSS G LPS T + I P V +SKWQC N TPGLSA MATHP G
Sbjct: 630 HMGRSRGGGSSDCRGPLPSFTRNTIFNPQVK*SSKWQCRNHTPGLSALNLMATHPLTGAI 451
Query: 451 TVLRSTGSTRLNLDGSLTG 507
TVLR GSTRLNL GS TG
Sbjct: 450 TVLRCGGSTRLNLRGSFTG 394
>gb|DR384963.1|DR384963 RTHG1_5_F06.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_5_F06_A029 5', mRNA sequence
Length = 759
Score = 147 bits (315), Expect = 6e-035
Identities = 57/81 (70%), Positives = 62/81 (76%)
Frame = -1 / -2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
+PV DP KFNLVDP +RNTV P GWVAIRF ADNPGVWF+HCHL+ H TWGL M +LV
Sbjct: 428 NPVKDPLKFNLVDPPQRNTVIAPVSGWVAIRFKADNPGVWFLHCHLDDHFTWGLNMVFLV 249
Query: 329 LDGSLPHQKLLPPPSDLPKC* 267
DGS P Q L PPP DLP C*
Sbjct: 248 KDGSGPLQSLEPPPRDLPMC* 186
Score = 109 bits (233), Expect = 1e-023
Identities = 49/79 (62%), Positives = 53/79 (67%)
Frame = +1 / +1
Query: 271 HLGKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTP 450
H+G+S GGGSS G LPS T + I P V +SKWQC N TPGLSA MATHP G
Sbjct: 190 HMGRSRGGGSSDCRGPLPSFTRNTIFNPQVK*SSKWQCRNHTPGLSALNLMATHPLTGAI 369
Query: 451 TVLRSTGSTRLNLDGSLTG 507
TVLR GSTRLNL GS TG
Sbjct: 370 TVLRCGGSTRLNLRGSFTG 426
>gb|DR071515.1|DR071515 RTDK1_20_H07.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_20_H07_A029 3', mRNA sequence
Length = 657
Score = 144 bits (310), Expect = 3e-034
Identities = 56/81 (69%), Positives = 62/81 (76%)
Frame = -1 / +2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
+PV DP KFNLVDP +RNTV P GWVAIRF ADNPGVWF+HCHL+ H TWGL M +LV
Sbjct: 224 NPVKDPLKFNLVDPQQRNTVIAPVSGWVAIRFKADNPGVWFLHCHLDDHFTWGLNMVFLV 403
Query: 329 LDGSLPHQKLLPPPSDLPKC* 267
+GS P Q L PPP DLP C*
Sbjct: 404 KNGSGPLQSLEPPPRDLPMC* 466
Score = 106 bits (227), Expect = 8e-023
Identities = 48/79 (60%), Positives = 52/79 (65%)
Frame = +1 / -1
Query: 271 HLGKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTP 450
H+G+S GGGSS G LP T + I P V +SKWQC N TPGLSA MATHP G
Sbjct: 462 HMGRSRGGGSSDCRGPLPFFTRNTIFNPQVK*SSKWQCRNHTPGLSALNLMATHPLTGAI 283
Query: 451 TVLRSTGSTRLNLDGSLTG 507
TVLR GSTRLNL GS TG
Sbjct: 282 TVLRCWGSTRLNLRGSFTG 226
>gb|CO200292.1|CO200292 GEO2_6_C07.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_C07_A032 5', mRNA sequence
Length = 882
Score = 144 bits (309), Expect = 4e-034
Identities = 55/78 (70%), Positives = 60/78 (76%)
Frame = -1 / +3
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
DP DP+KFNLVDP ERNTVGVP GGW IRF ADNPGVWFMHCHLE HTT GL+MA+LV
Sbjct: 612 DPKKDPAKFNLVDPPERNTVGVPTGGWTVIRFRADNPGVWFMHCHLEVHTTXGLKMAFLV 791
Query: 329 LDGSLPHQKLLPPPSDLP 276
+G P Q +LPP P
Sbjct: 792 ENGHGPEQSILPPQKTCP 845
Score = 104 bits (222), Expect = 4e-022
Identities = 47/78 (60%), Positives = 51/78 (65%)
Frame = +1 / -3
Query: 274 LGKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTPT 453
LG+ GG G P ST +AI P VVC S+ QCMNQTPGLSA R+ PP GTPT
Sbjct: 847 LGQVFWGGRMDCSGPCPFSTRNAIFSPQVVCTSR*QCMNQTPGLSALNRITVQPPVGTPT 668
Query: 454 VLRSTGSTRLNLDGSLTG 507
VLRS GSTRLNL GS G
Sbjct: 667 VLRSGGSTRLNLAGSFLG 614
>gb|DR014195.1|DR014195 HEAT1_24_A10.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_24_A10_A029 3', mRNA sequence
Length = 690
Score = 143 bits (307), Expect = 8e-034
Identities = 53/81 (65%), Positives = 61/81 (75%)
Frame = -1 / +2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
DPV DP KFNLVDP +RNTV P GWVAIRF ADNPG+WF+HCHL+ H TWGL M +LV
Sbjct: 185 DPVKDPLKFNLVDPPQRNTVIAPVSGWVAIRFKADNPGMWFLHCHLDDHFTWGLNMVFLV 364
Query: 329 LDGSLPHQKLLPPPSDLPKC* 267
+G P + PPP+DLP C*
Sbjct: 365 KNGGTPSSTIEPPPADLPAC* 427
Score = 101 bits (216), Expect = 3e-021
Identities = 46/79 (58%), Positives = 49/79 (62%)
Frame = +1 / -1
Query: 271 HLGKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTP 450
H G+S GGGS G P T + I PHV +SKWQC N PGLSA MATHP G
Sbjct: 423 HAGRSAGGGSMVDEGVPPFFTRNTIFNPHVKWSSKWQCRNHIPGLSALNLMATHPLTGAI 244
Query: 451 TVLRSTGSTRLNLDGSLTG 507
TVLR GSTRLNL GS TG
Sbjct: 243 TVLRCGGSTRLNLSGSFTG 187
>gb|DR014270.1|DR014270 HEAT1_24_A10.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_24_A10_A029 5', mRNA sequence
Length = 824
Score = 143 bits (307), Expect = 8e-034
Identities = 53/81 (65%), Positives = 61/81 (75%)
Frame = -1 / +3
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
DPV DP KFNLVDP +RNTV P GWVAIRF ADNPG+WF+HCHL+ H TWGL M +LV
Sbjct: 378 DPVKDPLKFNLVDPPQRNTVIAPVSGWVAIRFKADNPGMWFLHCHLDDHFTWGLNMVFLV 557
Query: 329 LDGSLPHQKLLPPPSDLPKC* 267
+G P + PPP+DLP C*
Sbjct: 558 KNGGTPSSTIEPPPADLPAC* 620
Score = 101 bits (216), Expect = 3e-021
Identities = 46/79 (58%), Positives = 49/79 (62%)
Frame = +1 / -2
Query: 271 HLGKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTP 450
H G+S GGGS G P T + I PHV +SKWQC N PGLSA MATHP G
Sbjct: 616 HAGRSAGGGSMVDEGVPPFFTRNTIFNPHVKWSSKWQCRNHIPGLSALNLMATHPLTGAI 437
Query: 451 TVLRSTGSTRLNLDGSLTG 507
TVLR GSTRLNL GS TG
Sbjct: 436 TVLRCGGSTRLNLSGSFTG 380
>gb|CF669991.1|CF669991 RTCNT1_47_H12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_47_H12_A029 3', mRNA sequence
Length = 568
Score = 135 bits (290), Expect(2) = 1e-033
Identities = 49/65 (75%), Positives = 55/65 (84%)
Frame = -1 / +1
Query: 497 DPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVLDGS 318
D KFNLVDP ERNTVGVP+GGWVA+RF ADNPGVWFMHCHLE HT+WGL+MAW+V +G
Sbjct: 46 DSPKFNLVDPAERNTVGVPSGGWVALRFRADNPGVWFMHCHLEVHTSWGLKMAWIVKNGK 225
Query: 317 LPHQK 303
P K
Sbjct: 226 GPFPK 240
Score = 26.7 bits (52), Expect(2) = 1e-033
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1 / +3
Query: 302 LLPPPSDLPKC* 267
+LPPP DLP C*
Sbjct: 243 ILPPPPDLPPC* 278
>gb|BE458054.1|BE458054 NXCI_005_C10_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_005_C10 5' similar to Arabidopsis
thaliana sequence At5g60020 laccase - like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 400
Score = 142 bits (305), Expect = 1e-033
Identities = 52/74 (70%), Positives = 58/74 (78%)
Frame = -1 / +3
Query: 497 DPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVLDGS 318
D KFNL+DPVERNT+GVP GGW A+RF ADNPGVWFMHCHLE HT+W L+MAW+V DG
Sbjct: 159 DAPKFNLIDPVERNTIGVPKGGWAALRFRADNPGVWFMHCHLEIHTSW*LKMAWVVKDGK 338
Query: 317 LPHQKLLPPPSDLP 276
P Q L PPP P
Sbjct: 339 GPLQSLPPPPXXXP 380
>gb|DR178232.1|DR178232 RTMNUT1_10_F05.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_10_F05_A029 3', mRNA sequence
Length = 727
Score = 142 bits (305), Expect = 1e-033
Identities = 54/81 (66%), Positives = 62/81 (76%)
Frame = -1 / +3
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
+P+ DP KFNLVDP +RNTV P GWVAIRF ADNPGVWF+HCHL+ H TWGL M +LV
Sbjct: 108 NPITDPLKFNLVDPPQRNTVIAPKSGWVAIRFKADNPGVWFLHCHLDDHLTWGLNMVFLV 287
Query: 329 LDGSLPHQKLLPPPSDLPKC* 267
+G P L PPP+DLPKC*
Sbjct: 288 KNGRGPLATLEPPPADLPKC* 350
Score = 104 bits (222), Expect = 4e-022
Identities = 46/79 (58%), Positives = 52/79 (65%)
Frame = +1 / -1
Query: 271 HLGKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTP 450
HLG+S GGGS+ G P T + I PHV +SKWQC N TPGLSA +ATHP G
Sbjct: 346 HLGRSAGGGSNVAKGPRPFLTRNTIFNPHVKWSSKWQCRNHTPGLSALNLIATHPLFGAI 167
Query: 451 TVLRSTGSTRLNLDGSLTG 507
TVLR GSTRLNL GS+ G
Sbjct: 166 TVLRCGGSTRLNLSGSVIG 110
>gb|DR742974.1|DR742974 RTCU1_8_E04.g2_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_8_E04_A029 5', mRNA sequence
Length = 635
Score = 142 bits (305), Expect = 1e-033
Identities = 54/81 (66%), Positives = 62/81 (76%)
Frame = -1 / +2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
+P+ DP KFNLVDP +RNTV P GWVAIRF ADNPGVWF+HCHL+ H TWGL M +LV
Sbjct: 206 NPITDPLKFNLVDPPQRNTVIAPKSGWVAIRFKADNPGVWFLHCHLDDHLTWGLNMVFLV 385
Query: 329 LDGSLPHQKLLPPPSDLPKC* 267
+G P L PPP+DLPKC*
Sbjct: 386 KNGRGPLATLEPPPADLPKC* 448
Score = 104 bits (222), Expect = 4e-022
Identities = 46/79 (58%), Positives = 52/79 (65%)
Frame = +1 / -3
Query: 271 HLGKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTP 450
HLG+S GGGS+ G P T + I PHV +SKWQC N TPGLSA +ATHP G
Sbjct: 444 HLGRSAGGGSNVAKGPRPFLTRNTIFNPHVKWSSKWQCRNHTPGLSALNLIATHPLFGAI 265
Query: 451 TVLRSTGSTRLNLDGSLTG 507
TVLR GSTRLNL GS+ G
Sbjct: 264 TVLRCGGSTRLNLSGSVIG 208
>gb|BE762117.1|BE762117 NXCI_081_E04_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_081_E04 5' similar to Arabidopsis
thaliana sequence At5g01190 laccase - like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 380
Score = 140 bits (300), Expect = 7e-033
Identities = 52/77 (67%), Positives = 59/77 (76%)
Frame = -1 / +3
Query: 470 PVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVLDGSLPHQKLLPP 291
PVERNT GVP GGW+AIRF ADNPGVWFMHCH HT+WGL+MAW+V +G P Q L PP
Sbjct: 3 PVERNTAGVPKGGWMAIRFRADNPGVWFMHCHXXIHTSWGLKMAWIVKNGKXPLQSLPPP 182
Query: 290 PSDLPKC*LDSSSISIL 240
PSDLP C* D + + L
Sbjct: 183 PSDLPPC*SDLITFNFL 233
>gb|CF671511.1|CF671511 RTCNT1_57_C11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_57_C11_A029 5', mRNA sequence
Length = 697
Score = 140 bits (300), Expect = 7e-033
Identities = 53/83 (63%), Positives = 62/83 (74%)
Frame = -1 / -2
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
+P DP KFNLVDP +RNTV P GWVAIRF ADNPGVWF+HCHL+ H WGL M +LV
Sbjct: 528 NPKTDPLKFNLVDPPQRNTVIAPVSGWVAIRFRADNPGVWFLHCHLDDHLAWGLNMVFLV 349
Query: 329 LDGSLPHQKLLPPPSDLPKC*LD 261
+G P L PPP+DLPKC*++
Sbjct: 348 KNGRGPLATLEPPPADLPKC*IE 280
Score = 105 bits (224), Expect = 2e-022
Identities = 46/79 (58%), Positives = 51/79 (64%)
Frame = +1 / +2
Query: 271 HLGKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTP 450
HLG+S GGGS+ G P T + I PH +SKWQC N TPGLSA MATHP G
Sbjct: 290 HLGRSAGGGSNVAKGPRPFFTRNTIFNPHAKWSSKWQCRNHTPGLSALNLMATHPLTGAM 469
Query: 451 TVLRSTGSTRLNLDGSLTG 507
TVLR GSTRLNL GS+ G
Sbjct: 470 TVLRCGGSTRLNLSGSVFG 526
>gb|CF477652.1|CF477652 RTWW3_9_B07.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_9_B07_A022 3', mRNA sequence
Length = 684
Score = 139 bits (298), Expect = 1e-032
Identities = 54/81 (66%), Positives = 60/81 (74%)
Frame = -1 / +3
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
+PV DP KFNLVDP ERNTVGVP GW AIRF+ADNPGVWF+HCHL+ H WGL A LV
Sbjct: 108 NPVTDPLKFNLVDPPERNTVGVPVNGWAAIRFVADNPGVWFVHCHLDDHLQWGLNTALLV 287
Query: 329 LDGSLPHQKLLPPPSDLPKC* 267
+G L PPP DLP+C*
Sbjct: 288 KNGRGRLATLQPPPRDLPRC* 350
>gb|CF474922.1|CF474922 RTWW2_8_G02.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_8_G02_A021 5', mRNA sequence
Length = 614
Score = 136 bits (292), Expect = 9e-032
Identities = 52/83 (62%), Positives = 61/83 (73%)
Frame = -1 / -3
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
+P DP KFNLVDP +RNTV P GWVAIRF ADNPGVWF+HCHL+ H WGL M +LV
Sbjct: 468 NPKTDPLKFNLVDPPQRNTVIAPVSGWVAIRFRADNPGVWFLHCHLDDHLAWGLNMVFLV 289
Query: 329 LDGSLPHQKLLPPPSDLPKC*LD 261
+G P L PP+DLPKC*++
Sbjct: 288 KNGRGPLATLEAPPADLPKC*IE 220
Score = 102 bits (218), Expect = 1e-021
Identities = 45/79 (56%), Positives = 50/79 (63%)
Frame = +1 / +2
Query: 271 HLGKSDGGGSSFWCGRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTP 450
HLG+S GG S+ G P T + I PH +SKWQC N TPGLSA MATHP G
Sbjct: 230 HLGRSAGGASNVAKGPRPFFTRNTIFNPHAKWSSKWQCRNHTPGLSALNLMATHPLTGAM 409
Query: 451 TVLRSTGSTRLNLDGSLTG 507
TVLR GSTRLNL GS+ G
Sbjct: 410 TVLRCGGSTRLNLSGSVFG 466
>gb|BX254102.1|BX254102 BX254102 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP093D01, mRNA sequence
Length = 426
Score = 136 bits (291), Expect = 1e-031
Identities = 51/72 (70%), Positives = 57/72 (79%)
Frame = -1 / -2
Query: 506 PVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLVL 327
P DP FNLVDP +RNTVGVP+GGWVAIRF ADNPGVWFMHCHLE HT+WGL+MAW+VL
Sbjct: 233 PRADPKHFNLVDPPQRNTVGVPSGGWVAIRFRADNPGVWFMHCHLEVHTSWGLKMAWVVL 54
Query: 326 DGSLPHQKLLPP 291
D K+ P
Sbjct: 53 DVKCTQIKVCLP 18
>gb|BQ701805.1|BQ701805 NXSI_120_G05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_120_G05 5' similar to Arabidopsis thaliana
sequence At5g03260 laccase (diphenol oxidase)-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 545
Score = 136 bits (291), Expect = 1e-031
Identities = 52/71 (73%), Positives = 57/71 (80%)
Frame = -1 / +1
Query: 509 DPVNDPSKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWFMHCHLEAHTTWGLRMAWLV 330
DP DP+KFNLVDP ERNTVGVP GGW IRF ADNPGVWFMHCHLE HTT GL+MA+LV
Sbjct: 331 DPKKDPAKFNLVDPPERNTVGVPTGGWTVIRFRADNPGVWFMHCHLEVHTTXGLKMAFLV 510
Query: 329 LDGSLPHQKLL 297
+G P Q +L
Sbjct: 511 ENGHGPEQSIL 543
Score = 100 bits (213), Expect = 7e-021
Identities = 43/65 (66%), Positives = 46/65 (70%)
Frame = +1 / -1
Query: 313 GRLPSSTNHAILRPHVVCASKWQCMNQTPGLSARKRMATHPPAGTPTVLRSTGSTRLNLD 492
G P ST +AI P VVC S+ QCMNQTPGLSA R+ PP GTPTVLRS GSTRLNL
Sbjct: 527 GPCPFSTRNAIFSPXVVCTSR*QCMNQTPGLSALNRITVQPPVGTPTVLRSGGSTRLNLA 348
Query: 493 GSLTG 507
GS G
Sbjct: 347 GSFLG 333
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 250,450,194
Number of Sequences: 355925
Number of extensions: 3205699
Number of successful extensions: 60362
Number of sequences better than 1.0e-020: 177
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 6404281260
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)