TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8228841.2.1
(621 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX652916.1|CX652916 COLD1_62_F11.b1_A029 Root cold Pinus... 164 6e-040
gb|DR095084.1|DR095084 STRR1_18_E04.g1_A033 Stem Response R... 164 6e-040
gb|CF390062.1|CF390062 RTDR2_12_E07.b1_A021 Loblolly pine r... 144 7e-034
gb|DR020312.1|DR020312 STRS1_36_C01.b1_A034 Shoot tip pitch... 96 2e-031
gb|DR048711.1|DR048711 RTBOR1_10_E10.g1_A029 Roots plus add... 101 7e-031
gb|CF390726.1|CF390726 RTDR2_17_D05.g1_A021 Loblolly pine r... 99 3e-030
gb|CO369254.1|CO369254 RTK1_46_A07.b1_A029 Roots minus pota... 97 8e-029
gb|CO369338.1|CO369338 RTK1_46_A07.g1_A029 Roots minus pota... 97 8e-029
gb|DR078654.1|DR078654 RTFEPL1_6_C01.b1_A029 Roots plus add... 99 7e-028
gb|DR078735.1|DR078735 RTFEPL1_6_C01.g1_A029 Roots plus add... 99 1e-027
gb|DR019869.1|DR019869 STRS1_33_B04.b1_A034 Shoot tip pitch... 72 1e-026
gb|CX646974.1|CX646974 COLD1_12_D12.g1_A029 Root cold Pinus... 74 2e-026
gb|CO164776.1|CO164776 FLD1_50_F04.b1_A029 Root flooded Pin... 72 3e-026
gb|CO364421.1|CO364421 RTK1_15_D02.g1_A029 Roots minus pota... 79 1e-024
gb|CO364332.1|CO364332 RTK1_15_D02.b1_A029 Roots minus pota... 79 1e-024
gb|DR081789.1|DR081789 RTFEPL1_32_F12.b1_A029 Roots plus ad... 111 3e-024
gb|CO158039.1|CO158039 FLD1_4_C03.b1_A029 Root flooded Pinu... 96 5e-024
gb|BX254352.1|BX254352 BX254352 Pinus pinaster differenciat... 75 2e-023
gb|BG039942.1|BG039942 NXSI_101_H03_F NXSI (Nsf Xylem Side ... 70 3e-023
gb|CO361958.1|CO361958 NDL2_8_E08.b1_A029 Needles control 2... 107 6e-023
gb|CO162557.1|CO162557 FLD1_36_C02.b1_A029 Root flooded Pin... 71 8e-023
gb|DR014803.1|DR014803 HEAT1_51_E12.g1_A029 Root at 37 C fo... 87 1e-022
gb|BX681997.1|BX681997 BX681997 RS Pinus pinaster cDNA clon... 75 2e-022
gb|CX646890.1|CX646890 COLD1_12_D12.b1_A029 Root cold Pinus... 74 5e-022
gb|DR385366.1|DR385366 RTHG1_8_F01.b1_A029 Roots plus added... 96 3e-021
gb|DR048637.1|DR048637 RTBOR1_10_E10.b1_A029 Roots plus add... 101 5e-021
>gb|CX652916.1|CX652916 COLD1_62_F11.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_F11_A029 3', mRNA sequence
Length = 805
Score = 164 bits (352), Expect = 6e-040
Identities = 59/121 (48%), Positives = 83/121 (68%)
Frame = +3 / +3
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGIGDVDTKDKPLPIKDALNDHVRLDYLQRH 197
W+Y+Y GL+D+L++IK +Y NPP++ITENG+ D ++ + +ALND R++Y H
Sbjct: 81 WLYVYAPGLRDLLIYIKQRYNNPPIFITENGVNDFPVENSDPSLDEALNDTWRINYCSEH 260
Query: 198 ISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVDRGNGCKRRMKRSAKWLKK 377
+ + AI GADVRG F WSL+DNFEW GYT R+G +Y+D +G KR K SA W K+
Sbjct: 261 LHYILQAIREGADVRGFFAWSLMDNFEWGFGYTSRFGFIYIDYKDGLKRYPKASAHWYKR 440
Query: 378 F 380
F
Sbjct: 441 F 443
>gb|DR095084.1|DR095084 STRR1_18_E04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_18_E04_A033 5', mRNA sequence
Length = 813
Score = 164 bits (352), Expect = 6e-040
Identities = 59/121 (48%), Positives = 83/121 (68%)
Frame = +3 / +1
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGIGDVDTKDKPLPIKDALNDHVRLDYLQRH 197
W+Y+Y GL+D+L++IK +Y NPP++ITENG+ D ++ + +ALND R++Y H
Sbjct: 346 WLYVYAPGLRDLLIYIKQRYNNPPIFITENGVNDFPVENSDPSLDEALNDTWRINYCSEH 525
Query: 198 ISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVDRGNGCKRRMKRSAKWLKK 377
+ + AI GADVRG F WSL+DNFEW GYT R+G +Y+D +G KR K SA W K+
Sbjct: 526 LHYILQAIREGADVRGFFAWSLMDNFEWGFGYTSRFGFIYIDYKDGLKRYPKASAHWYKR 705
Query: 378 F 380
F
Sbjct: 706 F 708
>gb|CF390062.1|CF390062 RTDR2_12_E07.b1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_12_E07_A021 3', mRNA
sequence
Length = 587
Score = 144 bits (308), Expect = 7e-034
Identities = 53/120 (44%), Positives = 80/120 (66%)
Frame = +3 / +2
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGIGDVDTKDKPLPIKDALNDHVRLDYLQRH 197
++Y+Y G+KD+L++IK++Y NPP++ITENG+ D + + +ALND R+ + H
Sbjct: 140 YLYVYAPGIKDLLIYIKHQYNNPPIFITENGVNDPIVNESTTSLDEALNDTGRISFCSEH 319
Query: 198 ISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVDRGNGCKRRMKRSAKWLKK 377
+ + +AI G+D+RG + WSL+DNFEWS GY +G Y+D +G KR K SA W KK
Sbjct: 320 LWYILEAIREGSDIRGFYAWSLMDNFEWSLGYEC*FGFHYIDYKDGLKRYPKASAHWYKK 499
>gb|DR020312.1|DR020312 STRS1_36_C01.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_36_C01_A034 3', mRNA sequence
Length = 903
Score = 96.4 bits (204), Expect(2) = 2e-031
Identities = 40/81 (49%), Positives = 52/81 (64%)
Frame = +3 / +1
Query: 144 PIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVD 323
P++ ALND R+ Y H+S L AI GADVRG+ WSLLD+ EWS+GY R+G+ YVD
Sbjct: 457 PLERALNDSKRVKYHYEHLSSLLQAIREGADVRGYVAWSLLDSLEWSSGYNYRFGLHYVD 636
Query: 324 RGNGCKRRMKRSAKWLKKFNR 386
+ KR + SA+W K R
Sbjct: 637 YHDNLKRYARASAQWFKTILR 699
Score = 59.7 bits (124), Expect(2) = 2e-031
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = +3 / +1
Query: 30 YPNGLKDILMFIKNKYGNPPVYITENGIGDVDTKDKPL 143
YP GL+D++ + K++Y NPP+YITE+G GD D PL
Sbjct: 349 YPAGLRDVISYTKHRYDNPPIYITESGYGDFDNGTTPL 462
>gb|DR048711.1|DR048711 RTBOR1_10_E10.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_10_E10_A029 5', mRNA sequence
Length = 667
Score = 101 bits (215), Expect(2) = 7e-031
Identities = 39/78 (50%), Positives = 53/78 (67%)
Frame = +3 / +3
Query: 147 IKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVDR 326
+ ALND R++Y + ++ L +AI GADVRG+F WSL+DNFEW GYT+R+G+V+VD
Sbjct: 162 LDQALNDTKRVNYFKGYLKALAEAIREGADVRGYFAWSLIDNFEWGQGYTKRFGLVFVDY 341
Query: 327 GNGCKRRMKRSAKWLKKF 380
+ KR K SA W F
Sbjct: 342 KDDLKRYPKSSAHWFTSF 395
Score = 52.4 bits (108), Expect(2) = 7e-031
Identities = 15/38 (39%), Positives = 27/38 (71%)
Frame = +3 / +3
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGIGDVDTK 131
W+Y+ P G + +L ++ +Y PP+Y+TENG+ D D++
Sbjct: 39 WLYIVPWGFRKVLKWLTERYNRPPIYVTENGMDDEDSE 152
>gb|CF390726.1|CF390726 RTDR2_17_D05.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_17_D05_A021 5', mRNA
sequence
Length = 796
Score = 98.7 bits (209), Expect(2) = 3e-030
Identities = 38/87 (43%), Positives = 57/87 (65%)
Frame = +3 / +2
Query: 114 GDVDTKDKPLPIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGY 293
G D + +++AL+D R++Y +H+S L +AI GADVRG+ WSLLDNFEW++GY
Sbjct: 281 GYADFDNGTTRLEEALHDSRRVEYHSQHLSYLLEAIREGADVRGYVVWSLLDNFEWASGY 460
Query: 294 TERYGIVYVDRGNGCKRRMKRSAKWLK 374
R+G+ Y+D + KR + SA W +
Sbjct: 461 DYRFGLYYIDYNDNLKRYARESAHWFR 541
Score = 53.3 bits (110), Expect(2) = 3e-030
Identities = 17/32 (53%), Positives = 24/32 (75%)
Frame = +3 / +2
Query: 30 YPNGLKDILMFIKNKYGNPPVYITENGIGDVD 125
YP GL+D++ + K++Y NPP+YITE G D D
Sbjct: 203 YPAGLRDVINYTKHRYNNPPIYITETGYADFD 298
>gb|CO369254.1|CO369254 RTK1_46_A07.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_46_A07_A029 3', mRNA sequence
Length = 811
Score = 96.8 bits (205), Expect(2) = 8e-029
Identities = 39/88 (44%), Positives = 56/88 (63%)
Frame = +3 / +2
Query: 114 GDVDTKDKPLPIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGY 293
G D + + A+ND R+ Y +H+S L++AI G+DVRG+ WSL+D+FEWS G+
Sbjct: 464 GYADFDNGTTSLARAVNDPGRVKYHYQHLSHLREAIRAGSDVRGYLVWSLMDDFEWSFGF 643
Query: 294 TERYGIVYVDRGNGCKRRMKRSAKWLKK 377
T R+G+ YVD N KR + SA W K+
Sbjct: 644 TYRFGLYYVDLNNHLKRYARASALWFKR 727
Score = 50.1 bits (103), Expect(2) = 8e-029
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = +3 / +2
Query: 30 YPNGLKDILMFIKNKYGNPPVYITENGIGDVD 125
YP GL ++L + KN+Y NP VYITE G D D
Sbjct: 386 YPAGLSELLNYTKNRYNNPTVYITETGYADFD 481
>gb|CO369338.1|CO369338 RTK1_46_A07.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_46_A07_A029 5', mRNA sequence
Length = 805
Score = 96.8 bits (205), Expect(2) = 8e-029
Identities = 39/88 (44%), Positives = 56/88 (63%)
Frame = +3 / +1
Query: 114 GDVDTKDKPLPIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGY 293
G D + + A+ND R+ Y +H+S L++AI G+DVRG+ WSL+D+FEWS G+
Sbjct: 454 GYADFDNGTTSLARAVNDPGRVKYHYQHLSHLREAIRAGSDVRGYLVWSLMDDFEWSFGF 633
Query: 294 TERYGIVYVDRGNGCKRRMKRSAKWLKK 377
T R+G+ YVD N KR + SA W K+
Sbjct: 634 TYRFGLYYVDLNNHLKRYARASALWFKR 717
Score = 50.1 bits (103), Expect(2) = 8e-029
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = +3 / +1
Query: 30 YPNGLKDILMFIKNKYGNPPVYITENGIGDVD 125
YP GL ++L + KN+Y NP VYITE G D D
Sbjct: 376 YPAGLSELLNYTKNRYNNPTVYITETGYADFD 471
>gb|DR078654.1|DR078654 RTFEPL1_6_C01.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_6_C01_A029 3', mRNA sequence
Length = 734
Score = 98.7 bits (209), Expect(2) = 7e-028
Identities = 38/87 (43%), Positives = 57/87 (65%)
Frame = +3 / +3
Query: 114 GDVDTKDKPLPIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGY 293
G D + +++AL+D R++Y +H+S L +AI GADVRG+ WSLLDNFEW++GY
Sbjct: 69 GYADFDNGTTRLEEALHDSRRVEYHSQHLSYLLEAIREGADVRGYVVWSLLDNFEWASGY 248
Query: 294 TERYGIVYVDRGNGCKRRMKRSAKWLK 374
R+G+ Y+D + KR + SA W +
Sbjct: 249 DYRFGLYYIDYNDNLKRYARESAHWFR 329
Score = 45.1 bits (92), Expect(2) = 7e-028
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +3 / +3
Query: 42 LKDILMFIKNKYGNPPVYITENGIGDVD 125
L+D++ + K++Y NPP+YITE G D D
Sbjct: 3 LRDVINYTKHRYNNPPIYITETGYADFD 86
>gb|DR078735.1|DR078735 RTFEPL1_6_C01.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_6_C01_A029 5', mRNA sequence
Length = 770
Score = 98.7 bits (209), Expect(2) = 1e-027
Identities = 38/87 (43%), Positives = 57/87 (65%)
Frame = +3 / +3
Query: 114 GDVDTKDKPLPIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGY 293
G D + +++AL+D R++Y +H+S L +AI GADVRG+ WSLLDNFEW++GY
Sbjct: 75 GYADFDNGTTRLEEALHDSRRVEYHSQHLSYLLEAIREGADVRGYVVWSLLDNFEWASGY 254
Query: 294 TERYGIVYVDRGNGCKRRMKRSAKWLK 374
R+G+ Y+D + KR + SA W +
Sbjct: 255 DYRFGLYYIDYNDNLKRYARESAHWFR 335
Score = 44.1 bits (90), Expect(2) = 1e-027
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +3 / +3
Query: 42 LKDILMFIKNKYGNPPVYITENGIGDVD 125
++D++ + K++Y NPP+YITE G D D
Sbjct: 9 IRDVINYTKHRYNNPPIYITETGYADFD 92
>gb|DR019869.1|DR019869 STRS1_33_B04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_33_B04_A034 3', mRNA sequence
Length = 868
Score = 71.6 bits (150), Expect(3) = 1e-026
Identities = 26/51 (50%), Positives = 35/51 (68%)
Frame = +3 / +2
Query: 228 GADVRGHFTWSLLDNFEWSAGYTERYGIVYVDRGNGCKRRMKRSAKWLKKF 380
G +V G+F WSLLDN+EW+AGYT R+G+ +VD + R K S +W K F
Sbjct: 515 GCNVGGYFVWSLLDNWEWAAGYTSRFGLYFVDYKHNLTRYPKASVQWFKCF 667
Score = 56.1 bits (116), Expect(3) = 1e-026
Identities = 17/34 (50%), Positives = 27/34 (79%)
Frame = +3 / +2
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGIGD 119
W+Y+ P+G++ ++ +IK +Y NPPV ITENG+ D
Sbjct: 308 WLYIVPHGIRSLMNYIKRRYNNPPVIITENGMDD 409
Score = 29.9 bits (59), Expect(3) = 1e-026
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3 / +2
Query: 141 LPIKDALNDHVRLDYLQRHISVLKDAI 221
+P+K+ALND R+ Y ++S L AI
Sbjct: 425 IPLKNALNDQKRIKYHAHYLSNLSAAI 505
>gb|CX646974.1|CX646974 COLD1_12_D12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_12_D12_A029 5', mRNA sequence
Length = 794
Score = 74.4 bits (156), Expect(3) = 2e-026
Identities = 28/53 (52%), Positives = 35/53 (66%)
Frame = +3 / +1
Query: 222 DLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVDRGNGCKRRMKRSAKWLKKF 380
D G V G+F WSLLDN+EW+AGYT R+G+ +VD + R K S KW K F
Sbjct: 226 DDGCKVGGYFAWSLLDNWEWAAGYTSRFGLYFVDYRHNLTRHPKASVKWFKCF 384
Score = 52.8 bits (109), Expect(3) = 2e-026
Identities = 16/34 (47%), Positives = 26/34 (76%)
Frame = +3 / +1
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGIGD 119
W+Y + +G++ ++ +IK +Y NPPV ITENG+ D
Sbjct: 25 WLYPFSHGIRSLMNYIKQRYNNPPVIITENGMDD 126
Score = 29.5 bits (58), Expect(3) = 2e-026
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3 / +1
Query: 123 DTKDKPLPIKDALNDHVRLDYLQRHISVLKDAI 221
D+ + +P+K ALND R+ Y ++S L AI
Sbjct: 124 DSNNILIPLKKALNDQKRIKYHAHYLSNLAAAI 222
>gb|CO164776.1|CO164776 FLD1_50_F04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_50_F04_A029 3', mRNA sequence
Length = 751
Score = 71.6 bits (150), Expect(3) = 3e-026
Identities = 26/51 (50%), Positives = 35/51 (68%)
Frame = +3 / +1
Query: 228 GADVRGHFTWSLLDNFEWSAGYTERYGIVYVDRGNGCKRRMKRSAKWLKKF 380
G +V G+F WSLLDN+EW+AGYT R+G+ +VD + R K S +W K F
Sbjct: 397 GCNVGGYFVWSLLDNWEWAAGYTSRFGLYFVDYKHNLTRYPKASVQWFKCF 549
Score = 56.1 bits (116), Expect(3) = 3e-026
Identities = 17/34 (50%), Positives = 27/34 (79%)
Frame = +3 / +1
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGIGD 119
W+Y+ P+G++ ++ +IK +Y NPPV ITENG+ D
Sbjct: 190 WLYIVPHGIRSLMNYIKRRYNNPPVIITENGMDD 291
Score = 28.6 bits (56), Expect(3) = 3e-026
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3 / +1
Query: 141 LPIKDALNDHVRLDYLQRHISVLKDAI 221
+P+K+ALND R+ Y ++S L AI
Sbjct: 307 IPLKNALNDQKRIKYHAHYLSNLFAAI 387
>gb|CO364421.1|CO364421 RTK1_15_D02.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_D02_A029 5', mRNA sequence
Length = 849
Score = 78.5 bits (165), Expect(2) = 1e-024
Identities = 28/51 (54%), Positives = 36/51 (70%)
Frame = +3 / -3
Query: 228 GADVRGHFTWSLLDNFEWSAGYTERYGIVYVDRGNGCKRRMKRSAKWLKKF 380
GAD+RG+ WSLLDNFEW+ GY R+G+ YVD + KR K SA W ++F
Sbjct: 376 GADIRGYLVWSLLDNFEWAHGYNYRFGLYYVDYKDNLKRYPKASANWFREF 224
Score = 56.5 bits (117), Expect(2) = 1e-024
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = +3 / -1
Query: 30 YPNGLKDILMFIKNKYGNPPVYITENGIGDVDTKDKPL 143
YP GLKDI+ + K++Y NPP+Y+TE G D D PL
Sbjct: 654 YPAGLKDIINYTKHRYNNPPLYVTETGYADFDDGTTPL 541
>gb|CO364332.1|CO364332 RTK1_15_D02.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_D02_A029 3', mRNA sequence
Length = 863
Score = 78.5 bits (165), Expect(2) = 1e-024
Identities = 28/51 (54%), Positives = 36/51 (70%)
Frame = +3 / -3
Query: 228 GADVRGHFTWSLLDNFEWSAGYTERYGIVYVDRGNGCKRRMKRSAKWLKKF 380
GAD+RG+ WSLLDNFEW+ GY R+G+ YVD + KR K SA W ++F
Sbjct: 387 GADIRGYLVWSLLDNFEWAHGYNYRFGLYYVDYKDNLKRYPKASANWFREF 235
Score = 56.5 bits (117), Expect(2) = 1e-024
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = +3 / -1
Query: 30 YPNGLKDILMFIKNKYGNPPVYITENGIGDVDTKDKPL 143
YP GLKDI+ + K++Y NPP+Y+TE G D D PL
Sbjct: 665 YPAGLKDIINYTKHRYNNPPLYVTETGYADFDDGTTPL 552
>gb|DR081789.1|DR081789 RTFEPL1_32_F12.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_32_F12_A029 3', mRNA sequence
Length = 674
Score = 111 bits (238), Expect = 3e-024
Identities = 43/93 (46%), Positives = 58/93 (62%)
Frame = +3 / +2
Query: 102 ENGIGDVDTKDKPLPIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEW 281
ENG+ D ++ + + LND R++Y H+ + AI GADVRG F WSL+DNFEW
Sbjct: 2 ENGVNDFPVENSDPSLDEGLNDTWRINYCSEHLHYIL*AIREGADVRGFFAWSLMDNFEW 181
Query: 282 SAGYTERYGIVYVDRGNGCKRRMKRSAKWLKKF 380
GYT R+G +Y+D +G KR K SA W K+F
Sbjct: 182 GFGYTSRFGFIYIDYKDGLKRYPKASAHWYKRF 280
>gb|CO158039.1|CO158039 FLD1_4_C03.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_4_C03_A029 3', mRNA sequence
Length = 548
Score = 95.9 bits (203), Expect(2) = 5e-024
Identities = 43/95 (45%), Positives = 55/95 (57%)
Frame = +3 / +2
Query: 114 GDVDTKDKPLPIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGY 293
G D + P+K +L D R+ Y +H+S L AI GADVRG+ W+LLDNFEW GY
Sbjct: 179 GYADFDNGTTPLKKSLQDSKRVKYHYQHLSNLLKAIREGADVRGYIVWALLDNFEWFNGY 358
Query: 294 TERYGIVYVDRGNGCKRRMKRSAKWLKKFNRAAHT 398
R+G+ YVD + KR K SA W K R +T
Sbjct: 359 NVRFGLNYVDYRHNLKRYAKASAYWFKHLLRI*NT 463
Score = 35.0 bits (70), Expect(2) = 5e-024
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +3 / +1
Query: 30 YPNGLKDILMFIKNKYGNPP 89
YP G++D++ + K++Y NPP
Sbjct: 100 YPKGIRDVINYTKHRYNNPP 159
>gb|BX254352.1|BX254352 BX254352 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP097C12, mRNA sequence
Length = 664
Score = 74.8 bits (157), Expect(2) = 2e-023
Identities = 27/51 (52%), Positives = 35/51 (68%)
Frame = +3 / +2
Query: 228 GADVRGHFTWSLLDNFEWSAGYTERYGIVYVDRGNGCKRRMKRSAKWLKKF 380
G DVRG+F WSLLDN+EW++G+T R+G+ +VD R K SA W K F
Sbjct: 344 GCDVRGYFVWSLLDNWEWNSGFTVRFGLYFVDYKGNLTRYPKASADWFKSF 496
Score = 53.8 bits (111), Expect(2) = 2e-023
Identities = 17/34 (50%), Positives = 26/34 (76%)
Frame = +3 / +2
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGIGD 119
W+Y+ P G++ +++IK +Y NPP+ ITENGI D
Sbjct: 137 WLYVVPWGIRSSMIYIKQRYDNPPIIITENGIDD 238
>gb|BG039942.1|BG039942 NXSI_101_H03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_101_H03 5' similar to Arabidopsis thaliana
sequence At5g54570 beta-glucosidase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 540
Score = 69.8 bits (146), Expect(2) = 3e-023
Identities = 25/47 (53%), Positives = 33/47 (70%)
Frame = +3 / +2
Query: 228 GADVRGHFTWSLLDNFEWSAGYTERYGIVYVDRGNGCKRRMKRSAKW 368
G DVRG+F WSLLDN+EW++G+T R+G+ +VD R K SA W
Sbjct: 398 GCDVRGYFVWSLLDNWEWNSGFTVRFGLYFVDYXXNLTRYPKASADW 538
Score = 58.3 bits (121), Expect(2) = 3e-023
Identities = 17/37 (45%), Positives = 30/37 (81%)
Frame = +3 / +2
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGIGDVDT 128
W+Y+ P G++ ++++IK +Y NPP++ITENGI D ++
Sbjct: 191 WLYVVPWGIRSLMIYIKQRYDNPPIFITENGIDDTNS 301
>gb|CO361958.1|CO361958 NDL2_8_E08.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_8_E08_A029 3', mRNA sequence
Length = 786
Score = 107 bits (229), Expect = 6e-023
Identities = 44/87 (50%), Positives = 56/87 (64%)
Frame = +3 / +2
Query: 114 GDVDTKDKPLPIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGY 293
G VD D P++ ALND R+ Y H+S L +AI GAD+RG+ WSLLDNFEWS GY
Sbjct: 236 GYVDFDDGKTPLEQALNDSRRVMYHSEHLSELLEAISEGADIRGYLVWSLLDNFEWSFGY 415
Query: 294 TERYGIVYVDRGNGCKRRMKRSAKWLK 374
T R+G+ YVD + KR + SA W +
Sbjct: 416 TYRFGLYYVDYKDNLKRYPRASANWFR 496
>gb|CO162557.1|CO162557 FLD1_36_C02.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_36_C02_A029 3', mRNA sequence
Length = 649
Score = 71.2 bits (149), Expect(2) = 8e-023
Identities = 26/51 (50%), Positives = 35/51 (68%)
Frame = +3 / +2
Query: 228 GADVRGHFTWSLLDNFEWSAGYTERYGIVYVDRGNGCKRRMKRSAKWLKKF 380
G +V G+F WSLLDN+EW+AGYT R+G+ +VD + R K S +W K F
Sbjct: 254 GCNVGGYFVWSLLDNWEWAAGYTSRFGLYFVDYKHNLTRYPKDSVQWFKCF 406
Score = 55.6 bits (115), Expect(2) = 8e-023
Identities = 17/34 (50%), Positives = 26/34 (76%)
Frame = +3 / +2
Query: 18 WIYMYPNGLKDILMFIKNKYGNPPVYITENGIGD 119
W+Y+ P G++ ++ +IK +Y NPPV ITENG+ D
Sbjct: 47 WLYIVPQGIRSLMNYIKQRYNNPPVIITENGMDD 148
>gb|DR014803.1|DR014803 HEAT1_51_E12.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_E12_A029 5', mRNA sequence
Length = 858
Score = 86.8 bits (183), Expect(2) = 1e-022
Identities = 37/78 (47%), Positives = 53/78 (67%)
Frame = +3 / -3
Query: 147 IKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVDR 326
+++ LND R+ + +S L AI G+DVRG+F WSLLDNFEW+ GYT R+G+ +VD
Sbjct: 580 LQENLNDVRRIRFHGDCLSYLTAAIKNGSDVRGYFVWSLLDNFEWAFGYTIRFGLYHVDF 401
Query: 327 GNGCKRRMKRSAKWLKKF 380
+ KR K SA+W ++F
Sbjct: 400 ISDQKRYPKLSAQWFRQF 347
Score = 39.1 bits (79), Expect(2) = 1e-022
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +3 / -3
Query: 9 GNPWIYMYPNGLKDILMFIKNKYGNPPVYITENG 110
G +++ P+G++ I+ ++K Y NP + ITENG
Sbjct: 712 GMDGLFVVPHGIQKIVEYVKEFYDNPTIIITENG 611
>gb|BX681997.1|BX681997 BX681997 RS Pinus pinaster cDNA clone RS67H05, mRNA sequence
Length = 585
Score = 75.3 bits (158), Expect(2) = 2e-022
Identities = 29/58 (50%), Positives = 40/58 (68%)
Frame = +3 / +1
Query: 147 IKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYV 320
++ ALND R+ Y H+S L I GADVRG+ WSL+D+FEWS+GY R+G+ +V
Sbjct: 412 LERALNDSGRMKYHSEHLSHLLQGIKDGADVRGYIIWSLMDSFEWSSGYNYRFGLYHV 585
Score = 50.1 bits (103), Expect(2) = 2e-022
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +3 / +1
Query: 30 YPNGLKDILMFIKNKYGNPPVYITENGIGDVD 125
YP GL+ ++ + K++Y NPP+YITE G D D
Sbjct: 301 YPAGLRGVINYTKHRYNNPPIYITETGYADFD 396
>gb|CX646890.1|CX646890 COLD1_12_D12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_12_D12_A029 3', mRNA sequence
Length = 777
Score = 74.4 bits (156), Expect(3) = 5e-022
Identities = 28/53 (52%), Positives = 35/53 (66%)
Frame = +3 / +2
Query: 222 DLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVDRGNGCKRRMKRSAKWLKKF 380
D G V G+F WSLLDN+EW+AGYT R+G+ +VD + R K S KW K F
Sbjct: 161 DDGCKVGGYFAWSLLDNWEWAAGYTSRFGLYFVDYRHNLTRHPKASVKWFKCF 319
Score = 37.7 bits (76), Expect(3) = 5e-022
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +3 / +2
Query: 60 FIKNKYGNPPVYITENGIGD 119
+IK +Y NPPV ITENG+ D
Sbjct: 2 YIKQRYNNPPVIITENGMDD 61
Score = 29.5 bits (58), Expect(3) = 5e-022
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3 / +2
Query: 123 DTKDKPLPIKDALNDHVRLDYLQRHISVLKDAI 221
D+ + +P+K ALND R+ Y ++S L AI
Sbjct: 59 DSNNILIPLKKALNDQKRIKYHAHYLSNLAAAI 157
>gb|DR385366.1|DR385366 RTHG1_8_F01.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_8_F01_A029 3', mRNA sequence
Length = 558
Score = 96.4 bits (204), Expect(2) = 3e-021
Identities = 41/91 (45%), Positives = 54/91 (59%)
Frame = +3 / +2
Query: 114 GDVDTKDKPLPIKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGY 293
G D + P++ ALND RL Y H+S L I GADVRG+ WSL+D+FEWS+GY
Sbjct: 110 GYADFDNGTTPLQRALNDSGRLKYHSEHLSHLLQGIKEGADVRGYIIWSLMDSFEWSSGY 289
Query: 294 TERYGIVYVDRGNGCKRRMKRSAKWLKKFNR 386
R+G+ +VD + KR + SA W K R
Sbjct: 290 NYRFGLYHVDYKDNLKRYPRSSAHWFKHILR 382
Score = 25.4 bits (49), Expect(2) = 3e-021
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2 / +1
Query: 29 VP*RSKGYPYVHKEQIRKPTGLHH*EW 109
+P R+KG ++K + + +HH*+W
Sbjct: 31 LPSRTKGRNKLYKAPL*RSPHIHH*DW 111
>gb|DR048637.1|DR048637 RTBOR1_10_E10.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_10_E10_A029 3', mRNA sequence
Length = 837
Score = 101 bits (215), Expect = 5e-021
Identities = 39/78 (50%), Positives = 53/78 (67%)
Frame = +3 / +2
Query: 147 IKDALNDHVRLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWSAGYTERYGIVYVDR 326
+ ALND R++Y + ++ L +AI GADVRG+F WSL+DNFEW GYT+R+G+V+VD
Sbjct: 32 LDQALNDTKRVNYFKGYLKALAEAIREGADVRGYFAWSLIDNFEWGQGYTKRFGLVFVDY 211
Query: 327 GNGCKRRMKRSAKWLKKF 380
+ KR K SA W F
Sbjct: 212 KDDLKRYPKSSAHWFTSF 265
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 350,871,890
Number of Sequences: 355925
Number of extensions: 5143854
Number of successful extensions: 56487
Number of sequences better than 1.0e-020: 31
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 8412403350
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)