TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5704661.2.1
(798 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR686620.1|DR686620 EST1076698 Normalized pine embryo li... 361 4e-099
gb|DR109571.1|DR109571 RTS1_3_E05.b1_A029 Roots minus sulfu... 352 2e-096
gb|DR689244.1|DR689244 EST1079330 Normalized pine embryo li... 352 2e-096
gb|DT635347.1|DT635347 EST1150278 Normalized pine embryo li... 352 2e-096
gb|CO364079.1|CO364079 RTK1_13_C05.g1_A029 Roots minus pota... 331 3e-090
gb|DR112556.1|DR112556 RTS1_29_B07.b1_A029 Roots minus sulf... 316 1e-085
gb|DT633664.1|DT633664 EST1148595 Normalized pine embryo li... 272 3e-082
gb|AW289781.1|AW289781 NXNV006B06F Nsf Xylem Normal wood Ve... 285 3e-076
gb|CD028366.1|CD028366 NXNV006B06 Nsf Xylem Normal wood Ver... 285 3e-076
gb|DR014696.1|DR014696 HEAT1_51_C03.b1_A029 Root at 37 C fo... 284 6e-076
gb|DR169090.1|DR169090 RTPHOS1_30_A06.b1_A029 Roots minus p... 247 7e-065
gb|BQ107024.1|BQ107024 NXLV085_F11_F NXLV (Nsf Xylem Late w... 142 6e-064
gb|CF396558.1|CF396558 RTDS2_22_C09.g1_A021 Drought-stresse... 244 6e-064
gb|DR053011.1|DR053011 RTCA1_8_A01.g1_A029 Roots minus calc... 237 1e-061
gb|DR161477.1|DR161477 RTFE1_12_B06.b1_A029 Roots minus iro... 235 3e-061
gb|CX713265.1|CX713265 RTPQ1_8_B07.b1_A032 Roots treated wi... 232 2e-060
gb|CX651405.1|CX651405 COLD1_52_D12.b1_A029 Root cold Pinus... 123 4e-051
gb|DR744023.1|DR744023 RTCU1_19_F03.g1_A029 Roots plus adde... 128 4e-048
gb|AI812705.1|AI812705 18B3 Pine Lambda Zap Xylem library P... 122 2e-043
gb|BI202957.1|BI202957 NXPV_093_C03_F NXPV (Nsf Xylem Plani... 169 2e-041
gb|DR078574.1|DR078574 RTFEPL1_5_C09.g1_A029 Roots plus add... 168 4e-041
gb|BX249940.1|BX249940 BX249940 Pinus pinaster differenciat... 167 7e-041
gb|DT637161.1|DT637161 EST1152092 Normalized pine embryo li... 152 2e-036
gb|BF221350.1|BF221350 NXCI_157_F07_F NXCI (Nsf Xylem Compr... 100 7e-036
gb|DR744317.1|DR744317 RTCU1_21_E03.g1_A029 Roots plus adde... 103 1e-034
gb|BQ697933.1|BQ697933 NXPV_062_F07_F NXPV (Nsf Xylem Plani... 100 3e-033
gb|DT633602.1|DT633602 EST1148533 Normalized pine embryo li... 119 8e-033
gb|DR015777.1|DR015777 STRS1_5_C07.g1_A034 Shoot tip pitch ... 139 2e-032
gb|DR015694.1|DR015694 STRS1_5_C07.b1_A034 Shoot tip pitch ... 138 5e-032
gb|BX250554.1|BX250554 BX250554 Pinus pinaster differenciat... 124 9e-028
gb|DR692110.1|DR692110 EST1082197 Normalized pine embryo li... 122 4e-027
gb|DR060177.1|DR060177 RTNIT1_26_E10.b1_A029 Roots minus ni... 118 4e-026
gb|BQ698491.1|BQ698491 NXPV_070_E11_F NXPV (Nsf Xylem Plani... 92 4e-026
gb|BG319249.1|BG319249 NXPV_019_E12_F NXPV (Nsf Xylem Plani... 116 1e-025
gb|BQ197959.1|BQ197959 NXLV123_C04_F NXLV (Nsf Xylem Late w... 116 1e-025
gb|BX252912.1|BX252912 BX252912 Pinus pinaster differenciat... 108 4e-023
gb|CX651478.1|CX651478 COLD1_52_D12.g1_A029 Root cold Pinus... 87 4e-021
>gb|DR686620.1|DR686620 EST1076698 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABI03 3' end, mRNA sequence
Length = 866
Score = 361 bits (782), Expect = 4e-099
Identities = 132/191 (69%), Positives = 165/191 (86%)
Frame = -2 / +2
Query: 788 RPGRYLSILNHLRFYLPEMHPKLDKMVFLDDDIVVKKDLAGLWSINMKGKVNGAVETCGE 609
R +YLS+LNHLRFYLP+++PKLDK++FLDDDIVV+KDL LWS+++ GKVNGAVETCGE
Sbjct: 290 RNPKYLSMLNHLRFYLPQVYPKLDKILFLDDDIVVQKDLTPLWSVDLHGKVNGAVETCGE 469
Query: 608 SFHRYDRYLNFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITEIYHSWQKLNEDRSL 429
SFHR+D+YLNFSNP I + FDP+AC WA+GMNVFDL EW++Q+IT IYH WQ +NEDR L
Sbjct: 470 SFHRFDKYLNFSNPHIARHFDPNACGWAYGMNVFDLKEWKKQDITGIYHKWQNMNEDRVL 649
Query: 428 WKLGTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKPWLEIGL 249
WKLGTLP L+TF+ T PL +SWHVLGLGYNP V+ +I++AAV+HYNGNMKPWLE+ +
Sbjct: 650 WKLGTLPPGLITFYGLTHPLDKSWHVLGLGYNPSVDRLEIDNAAVVHYNGNMKPWLELAM 829
Query: 248 PKFRSYWSKYL 216
K+R YW+KY+
Sbjct: 830 TKYRPYWTKYI 862
Score = 184 bits (396), Expect = 7e-046
Identities = 92/157 (58%), Positives = 102/157 (64%)
Frame = +1 / -3
Query: 259 SNQGFMLPL*CMTAACSMSLLLTWGL*PRPRTCHDRLRGNVLFQNVTKHKGRVPSFQSDL 438
SNQGFM PL* TAA S+S T GL P+P TC D +G V NV G VPSF + L
Sbjct: 819 SNQGFMFPL**TTAALSISKRSTLGLYPKPSTCQDLSKGWVKP*NVINPGGSVPSFHNTL 640
Query: 439 SSLSFCHE**ISVMFCRLHSARSNTFIPKAQTQACGSKLLVIMGFEKFRYRS*RWKLSPQ 618
SS FCH * I V+ C HS RSNTFIP AQ QA GSK L + G EK RY S R KLSPQ
Sbjct: 639 SSFMFCHL*YIPVISCFFHSLRSNTFIPYAQPQALGSKCLAMCGLEKLRYLSNR*KLSPQ 460
Query: 619 VSTAPFTFPFMLIDQRPARSFFTTMSSSRKTILSSFG 729
VSTAP TFP D + +SF TT+SSS+K ILSS G
Sbjct: 459 VSTAPLTFP*RSTDHKGVKSFCTTISSSKKRILSSLG 349
Score = 103 bits (219), Expect = 2e-021
Identities = 67/193 (34%), Positives = 100/193 (51%)
Frame = -1 / +1
Query: 798 FERPPGQVPVNPQSSPLLPT*DASKA*QDGLS***HRSKEGSGWPLVNQHEGEGKRCC*D 619
FE ++ ++ +SS L + S+ QD **+ E +V++ +G C +
Sbjct: 280 FEI*KSKIFIHAKSSSFLSSTSLSQTGQDPFLG**YCGAERFDALVVSRSSWKG*WCSGN 459
Query: 618 LWREFPSL*SIPEFFKSHYHQEF*PTCLCLGFWNECV*PG*MEAAEHN*NLSLVAEA**R 439
LWR+ +* I FF+S + Q F* CL LG W+EC+* ME +N N+S VAE *
Sbjct: 460 LWRKLSPV*QIS*FFQSAHSQAF*S*CLWLGIWDECI*SQRMEETRYNWNISQVAEHE*G 639
Query: 438 *ITLETWYSPFVFGHILEQDISPQPVMACSWSRLQSPC*QQRH*ACCSHTLQWQHEALVG 259
* +E W + H+L D S V+AC+ R+ S R * C +LQW+HE LV
Sbjct: 640 *SVVEAWNTTPWIDHVLWLDPSFGQVLACAGFRI*S*RGPFRD*QCSCCSLQWEHETLVR 819
Query: 258 DWSTQVSELLVQV 220
+ +V LL ++
Sbjct: 820 AGNDEVQALLDKI 858
Score = 90.4 bits (191), Expect(2) = 8e-023
Identities = 44/122 (36%), Positives = 77/122 (63%)
Frame = +3 / -2
Query: 396 DQTQRESTKFPE*SIFIKLLPRVINFSYVLPPPFSQVKHIHSKSPNTSMWVKTLGDNGI* 575
DQ++ +K P+ SI I +LP VI SY+L PF ++K+IH P TS+ +K G I
Sbjct: 682 DQSRG*CSKLPQHSILIHVLPLVIYSSYILFLPFFEIKYIHPICPTTSIRIKMPGYVRIG 503
Query: 576 KIQVSIIAMETLSTSLNSTVYLPLHVD*PKASQILLYYDVIIKKDHLVKLWMHLR*VKAE 755
KI++ + ++ STS + T+ L + + *P+ QI L++++II++ LV+ ++L ++ +
Sbjct: 502 KIKIFVKPVKAFSTSFHCTINLSMKIY*PQGRQIFLHHNIIIQEKDLVQFGINLWKIETK 323
Query: 756 MI 761
MI
Sbjct: 322 MI 317
Score = 36.8 bits (74), Expect(2) = 8e-023
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3 / -2
Query: 219 ILGPVAPKLG*TNLQPGLHVAIVMYDCSMLNVSAVNMGIVT*TKNMP 359
I PV P L L P HV IVM + ++N+ V+ I++*T++MP
Sbjct: 859 IFCPVRPVLRHCQL*PRFHVPIVMNNSCIVNL*TVHARIIS*TQHMP 719
>gb|DR109571.1|DR109571 RTS1_3_E05.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_3_E05_A029 3', mRNA sequence
Length = 820
Score = 352 bits (762), Expect = 2e-096
Identities = 129/209 (61%), Positives = 168/209 (80%)
Frame = -2 / +3
Query: 788 RPGRYLSILNHLRFYLPEMHPKLDKMVFLDDDIVVKKDLAGLWSINMKGKVNGAVETCGE 609
R +YLS+LNHLRFYLPEM+PKL +++FLDDD+VV+KDL GLW I+M+GKVNGAVETC
Sbjct: 24 RNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMEGKVNGAVETCFG 203
Query: 608 SFHRYDRYLNFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITEIYHSWQKLNEDRSL 429
SFHRYD+Y+NFS+P+I F+P AC WA+GMN F L WRR+ TE YH WQ LNE+R+L
Sbjct: 204 SFHRYDKYMNFSHPLIKARFNPKACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTL 383
Query: 428 WKLGTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKPWLEIGL 249
WKLGTLP L+T++ T PL +SWHVLGLGYNP ++ +I +AAV+H+NGNMKPWL+IG+
Sbjct: 384 WKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGM 563
Query: 248 PKFRSYWSKYLDYDQSFLRECNINP*RNL 162
++R W+KY+DYD F++ CN *+ +
Sbjct: 564 NQYRDTWTKYVDYDMEFVQMCNFGH*KKI 650
Score = 164 bits (352), Expect = 9e-040
Identities = 92/186 (49%), Positives = 105/186 (56%)
Frame = +1 / -1
Query: 184 LHSRRKDWS*SRYLDQ*LRNLGRPISNQGFMLPL*CMTAACSMSLLLTWGL*PRPRTCHD 363
LH S*S YL Q R PIS+ GF+ PL TAA +S +L GL PRPRTC D
Sbjct: 628 LHICTNSIS*STYLVQVSRY*FMPISSHGFIFPLK*TTAALRISSILILGLYPRPRTCQD 449
Query: 364 RLRGNVLFQNVTKHKGRVPSFQSDLSSLSFCHE**ISVMFCRLHSARSNTFIPKAQTQAC 543
RG V+ V + G VPSF + S FC * SV F LH+++ FIP AQ QA
Sbjct: 448 LSRGFVVL**VIRPGGNVPSFHNVRFSFRFCQ**YSSVHFSLLHASKWKKFIP*AQPQAL 269
Query: 544 GSKLLVIMGFEKFRYRS*RWKLSPQVSTAPFTFPFMLIDQRPARSFFTTMSSSRKTILSS 723
G L +I G EKF Y S*RW VSTAP TFP + I P RSF TT SSSR I +
Sbjct: 268 GLNLALIRG*EKFIYLS*RWNEPKHVSTAPLTFPSISISHNPVRSF*TTTSSSRNKIRCN 89
Query: 724 FGCISG 741
FG ISG
Sbjct: 88 FGYISG 71
>gb|DR689244.1|DR689244 EST1079330 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACF91 3' end, mRNA sequence
Length = 854
Score = 352 bits (762), Expect = 2e-096
Identities = 129/209 (61%), Positives = 168/209 (80%)
Frame = -2 / +2
Query: 788 RPGRYLSILNHLRFYLPEMHPKLDKMVFLDDDIVVKKDLAGLWSINMKGKVNGAVETCGE 609
R +YLS+LNHLRFYLPEM+PKL +++FLDDD+VV+KDL GLW I+M+GKVNGAVETC
Sbjct: 8 RNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMEGKVNGAVETCFG 187
Query: 608 SFHRYDRYLNFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITEIYHSWQKLNEDRSL 429
SFHRYD+Y+NFS+P+I F+P AC WA+GMN F L WRR+ TE YH WQ LNE+R+L
Sbjct: 188 SFHRYDKYMNFSHPLIKARFNPKACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTL 367
Query: 428 WKLGTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKPWLEIGL 249
WKLGTLP L+T++ T PL +SWHVLGLGYNP ++ +I +AAV+H+NGNMKPWL+IG+
Sbjct: 368 WKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGM 547
Query: 248 PKFRSYWSKYLDYDQSFLRECNINP*RNL 162
++R W+KY+DYD F++ CN *+ +
Sbjct: 548 NQYRDTWTKYVDYDMEFVQMCNFGH*KKI 634
Score = 164 bits (352), Expect = 9e-040
Identities = 92/186 (49%), Positives = 105/186 (56%)
Frame = +1 / -3
Query: 184 LHSRRKDWS*SRYLDQ*LRNLGRPISNQGFMLPL*CMTAACSMSLLLTWGL*PRPRTCHD 363
LH S*S YL Q R PIS+ GF+ PL TAA +S +L GL PRPRTC D
Sbjct: 612 LHICTNSIS*STYLVQVSRY*FMPISSHGFIFPLK*TTAALRISSILILGLYPRPRTCQD 433
Query: 364 RLRGNVLFQNVTKHKGRVPSFQSDLSSLSFCHE**ISVMFCRLHSARSNTFIPKAQTQAC 543
RG V+ V + G VPSF + S FC * SV F LH+++ FIP AQ QA
Sbjct: 432 LSRGFVVL**VIRPGGNVPSFHNVRFSFRFCQ**YSSVHFSLLHASKWKKFIP*AQPQAL 253
Query: 544 GSKLLVIMGFEKFRYRS*RWKLSPQVSTAPFTFPFMLIDQRPARSFFTTMSSSRKTILSS 723
G L +I G EKF Y S*RW VSTAP TFP + I P RSF TT SSSR I +
Sbjct: 252 GLNLALIRG*EKFIYLS*RWNEPKHVSTAPLTFPSISISHNPVRSF*TTTSSSRNKIRCN 73
Query: 724 FGCISG 741
FG ISG
Sbjct: 72 FGYISG 55
>gb|DT635347.1|DT635347 EST1150278 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGF84 3' end, mRNA sequence
Length = 768
Score = 352 bits (762), Expect = 2e-096
Identities = 129/209 (61%), Positives = 168/209 (80%)
Frame = -2 / +1
Query: 788 RPGRYLSILNHLRFYLPEMHPKLDKMVFLDDDIVVKKDLAGLWSINMKGKVNGAVETCGE 609
R +YLS+LNHLRFYLPEM+PKL +++FLDDD+VV+KDL GLW I+M+GKVNGAVETC
Sbjct: 16 RNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMEGKVNGAVETCFG 195
Query: 608 SFHRYDRYLNFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITEIYHSWQKLNEDRSL 429
SFHRYD+Y+NFS+P+I F+P AC WA+GMN F L WRR+ TE YH WQ LNE+R+L
Sbjct: 196 SFHRYDKYMNFSHPLIKARFNPKACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTL 375
Query: 428 WKLGTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKPWLEIGL 249
WKLGTLP L+T++ T PL +SWHVLGLGYNP ++ +I +AAV+H+NGNMKPWL+IG+
Sbjct: 376 WKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGM 555
Query: 248 PKFRSYWSKYLDYDQSFLRECNINP*RNL 162
++R W+KY+DYD F++ CN *+ +
Sbjct: 556 NQYRDTWTKYVDYDMEFVQMCNFGH*KKI 642
Score = 164 bits (352), Expect = 9e-040
Identities = 92/186 (49%), Positives = 105/186 (56%)
Frame = +1 / -2
Query: 184 LHSRRKDWS*SRYLDQ*LRNLGRPISNQGFMLPL*CMTAACSMSLLLTWGL*PRPRTCHD 363
LH S*S YL Q R PIS+ GF+ PL TAA +S +L GL PRPRTC D
Sbjct: 620 LHICTNSIS*STYLVQVSRY*FMPISSHGFIFPLK*TTAALRISSILILGLYPRPRTCQD 441
Query: 364 RLRGNVLFQNVTKHKGRVPSFQSDLSSLSFCHE**ISVMFCRLHSARSNTFIPKAQTQAC 543
RG V+ V + G VPSF + S FC * SV F LH+++ FIP AQ QA
Sbjct: 440 LSRGFVVL**VIRPGGNVPSFHNVRFSFRFCQ**YSSVHFSLLHASKWKKFIP*AQPQAL 261
Query: 544 GSKLLVIMGFEKFRYRS*RWKLSPQVSTAPFTFPFMLIDQRPARSFFTTMSSSRKTILSS 723
G L +I G EKF Y S*RW VSTAP TFP + I P RSF TT SSSR I +
Sbjct: 260 GLNLALIRG*EKFIYLS*RWNEPKHVSTAPLTFPSISISHNPVRSF*TTTSSSRNKIRCN 81
Query: 724 FGCISG 741
FG ISG
Sbjct: 80 FGYISG 63
>gb|CO364079.1|CO364079 RTK1_13_C05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_13_C05_A029 5', mRNA sequence
Length = 912
Score = 331 bits (718), Expect = 3e-090
Identities = 123/204 (60%), Positives = 164/204 (80%)
Frame = -2 / -1
Query: 788 RPGRYLSILNHLRFYLPEMHPKLDKMVFLDDDIVVKKDLAGLWSINMKGKVNGAVETCGE 609
R +YLS+LNHLRFY+PE++P L+K+VFLDDD+VV+KDL L+SI++ G VNGAVETC E
Sbjct: 795 RNPKYLSMLNHLRFYIPEVYPALEKVVFLDDDVVVQKDLTPLFSIDLHGNVNGAVETCLE 616
Query: 608 SFHRYDRYLNFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITEIYHSWQKLNEDRSL 429
+FHRY +YLNFS+P+I FD AC WAFGMNVFDL W++ N+T YH WQ+ N DR+L
Sbjct: 615 TFHRYHKYLNFSHPMIRSHFDADACGWAFGMNVFDLVAWKKLNVTSRYHYWQEQNVDRTL 436
Query: 428 WKLGTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKPWLEIGL 249
WKLGTLP L+TF+ T PL R WH+LGLGY+P+V+ + IE AV+HYNGNMKPWL++ +
Sbjct: 435 WKLGTLPPGLLTFYGLTEPLDRRWHILGLGYDPNVDMQLIESGAVLHYNGNMKPWLKLAM 256
Query: 248 PKFRSYWSKYLDYDQSFLRECNIN 177
+++S+W KY++Y FL++CNI+
Sbjct: 255 NRYKSFWEKYVNYLHPFLQKCNIH 184
Score = 151 bits (325), Expect = 5e-036
Identities = 81/160 (50%), Positives = 94/160 (58%)
Frame = +1 / +2
Query: 262 NQGFMLPL*CMTAACSMSLLLTWGL*PRPRTCHDRLRGNVLFQNVTKHKGRVPSFQSDLS 441
N GFM PL*C TA S+S + T+G *P P C R G+V V+K G+VPSFQS LS
Sbjct: 269 NHGFMFPL*CKTAPLSISCMSTFGS*PSPSICQRRSSGSVRP*KVSKPGGKVPSFQSVLS 448
Query: 442 SLSFCHE**ISVMFCRLHSARSNTFIPKAQTQACGSKLLVIMGFEKFRYRS*RWKLSPQV 621
+ C * V H+ RSNTFIPKA A SK IMG+EK RY R +S QV
Sbjct: 449 TFCSCQ**YRLVTLSFFHATRSNTFIPKAHPHASASK*ERIMGWEKLRYLWYR*NVSRQV 628
Query: 622 STAPFTFPFMLIDQRPARSFFTTMSSSRKTILSSFGCISG 741
STAP TFP I++ +SF TT SSSRKT S G SG
Sbjct: 629 STAPLTFPCKSIEKSGVKSF*TTTSSSRKTTFSRAGYTSG 748
>gb|DR112556.1|DR112556 RTS1_29_B07.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_29_B07_A029 3', mRNA sequence
Length = 688
Score = 316 bits (685), Expect = 1e-085
Identities = 117/198 (59%), Positives = 155/198 (78%)
Frame = -2 / +2
Query: 779 RYLSILNHLRFYLPEMHPKLDKMVFLDDDIVVKKDLAGLWSINMKGKVNGAVETCGESFH 600
+YLS+LNHLRFY+PE++P LDK+VFLDDD+VV+KDL L+SI++ G VNGAVETC E+FH
Sbjct: 41 KYLSMLNHLRFYIPEIYPALDKVVFLDDDVVVQKDLTPLFSIDLHGNVNGAVETCLETFH 220
Query: 599 RYDRYLNFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITEIYHSWQKLNEDRSLWKL 420
RY +YLNFS+P I FDP AC WAFGMNVFDL W+ N+T YH WQ+ N DR+LWKL
Sbjct: 221 RYHKYLNFSHPKIHSHFDPEACGWAFGMNVFDLVAWKNANVTSRYHYWQEQNVDRTLWKL 400
Query: 419 GTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKPWLEIGLPKF 240
GTLP L++F+ T PL R WHVLGLGY+ +++ + IE AVIH+NGNMKPWL++ + ++
Sbjct: 401 GTLPPGLLSFYGLTEPLDRRWHVLGLGYDLNIDEQLIESGAVIHFNGNMKPWLKLAMKRY 580
Query: 239 RSYWSKYLDYDQSFLREC 186
++ W Y++Y L++C
Sbjct: 581 KAIWEMYVNYSHPLLQQC 634
Score = 162 bits (348), Expect = 3e-039
Identities = 84/160 (52%), Positives = 98/160 (61%)
Frame = +1 / -2
Query: 262 NQGFMLPL*CMTAACSMSLLLTWGL*PRPRTCHDRLRGNVLFQNVTKHKGRVPSFQSDLS 441
NQGF+LPL C+TA S+S + *P+P TCH R G+V N + G VPSFQS S
Sbjct: 558 NQGFILPLKCITAPLSISCSSMFRS*PKPNTCHRRSSGSVRP*NESNPGGNVPSFQSVRS 379
Query: 442 SLSFCHE**ISVMFCRLHSARSNTFIPKAQTQACGSKLLVIMGFEKFRYRS*RWKLSPQV 621
+ C * V H+ RSNTFIPKA QA GSK I+G EK RY RW +S QV
Sbjct: 378 TFCSCQ**YRLVTLAFFHATRSNTFIPKAHPQASGSK*EWILG*EKLRYLWYRWNVSRQV 199
Query: 622 STAPFTFPFMLIDQRPARSFFTTMSSSRKTILSSFGCISG 741
STAPFTFP I++ +SF TT SSSR T LSS G ISG
Sbjct: 198 STAPFTFPCKSIEKSGVKSF*TTTSSSRNTTLSSAGYISG 79
Score = 91.8 bits (194), Expect(2) = 4e-025
Identities = 45/126 (35%), Positives = 78/126 (61%)
Frame = +3 / -1
Query: 399 QTQRESTKFPE*SIFIKLLPRVINFSYVLPPPFSQVKHIHSKSPNTSMWVKTLGDNGI*K 578
Q+ R+ T PE SI I LLP +I+ SY+ P ++KHIH K P+TS+ ++ D + +
Sbjct: 421 QSWRQCT*LPECSIHILLLPVMISASYIGILPCHKIKHIHPKGPSTSLRIEVRMDLRVRE 242
Query: 579 IQVSIIAMETLSTSLNSTVYLPLHVD*PKASQILLYYDVIIKKDHLVKLWMHLR*VKAEM 758
+++ ++++E L TS NS +++ + V * K Q+ L +II+K H V+ ++ R V+ M
Sbjct: 241 VEIFMVSVECLKTSFNSPIHISVQVY*EKWCQVFLNNHIIIQKHHFVQCRIYFRNVEP*M 62
Query: 759 IED*QV 776
+ *+V
Sbjct: 61 V*H*EV 44
Score = 43.2 bits (88), Expect(2) = 4e-025
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = +3 / -1
Query: 258 LQPGLHVAIVMYDCSMLNVSAVNMGIVT*TKNMP 359
LQPGLH+ I MY+C LN +N+ I+T* MP
Sbjct: 562 LQPGLHITIKMYNCPTLNKLFINV*IIT*A*YMP 461
>gb|DT633664.1|DT633664 EST1148595 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFX37 3' end, mRNA sequence
Length = 812
Score = 272 bits (589), Expect(2) = 3e-082
Identities = 102/148 (68%), Positives = 125/148 (84%)
Frame = -2 / +1
Query: 788 RPGRYLSILNHLRFYLPEMHPKLDKMVFLDDDIVVKKDLAGLWSINMKGKVNGAVETCGE 609
R +YLS+LNHLRFYLP+++PKLDK++FLDDDIVV+KDL LWS+++ GKVNGAVETCGE
Sbjct: 298 RNPKYLSMLNHLRFYLPQVYPKLDKILFLDDDIVVQKDLTPLWSVDLHGKVNGAVETCGE 477
Query: 608 SFHRYDRYLNFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITEIYHSWQKLNEDRSL 429
SFHR+D+YLNFSNP I + FDP+AC WA+GMNVFDL EW++Q+IT IYH WQ +NEDR L
Sbjct: 478 SFHRFDKYLNFSNPHIARHFDPNACGWAYGMNVFDLKEWKKQDITGIYHKWQNMNEDRVL 657
Query: 428 WKLGTLPLCLVTFWNKTFPLSRSWHVLG 345
WKLGTLP L+TF+ T PL +SW G
Sbjct: 658 WKLGTLPPGLITFYGLTHPLDKSWACAG 741
Score = 144 bits (308), Expect(2) = 7e-037
Identities = 72/128 (56%), Positives = 80/128 (62%)
Frame = +1 / -1
Query: 346 PRTCHDRLRGNVLFQNVTKHKGRVPSFQSDLSSLSFCHE**ISVMFCRLHSARSNTFIPK 525
P D +G V NV G VPSF + LSS FCH * I V+ C HS RSNTFIP
Sbjct: 740 PAHAQDLSKGWVKP*NVINPGGSVPSFHNTLSSFMFCHL*YIPVISCFFHSLRSNTFIPY 561
Query: 526 AQTQACGSKLLVIMGFEKFRYRS*RWKLSPQVSTAPFTFPFMLIDQRPARSFFTTMSSSR 705
AQ QA GSK L + G EK RY S R KLSPQVSTAP TFP D + +SF TT+SSS+
Sbjct: 560 AQPQALGSKCLAMCGLEKLRYLSNR*KLSPQVSTAPLTFP*RSTDHKGVKSFCTTISSSK 381
Query: 706 KTILSSFG 729
K ILSS G
Sbjct: 380 KRILSSLG 357
Score = 53.3 bits (110), Expect(2) = 3e-082
Identities = 19/27 (70%), Positives = 24/27 (88%)
Frame = -2 / +2
Query: 356 HVLGLGYNPHVNSRDIEHAAVIHYNGN 276
HVLGLGYNP V+ +I++AAV+HYNGN
Sbjct: 731 HVLGLGYNPSVDRLEIDNAAVVHYNGN 811
Score = 30.4 bits (60), Expect(2) = 7e-037
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +1 / -3
Query: 280 PL*CMTAACSMSLLLTWGL*PRPRTC 357
PL* TAA S+S T GL P+P TC
Sbjct: 807 PL**TTAALSISKRSTLGLYPKPSTC 730
>gb|AW289781.1|AW289781 NXNV006B06F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006B06 5', mRNA sequence
Length = 465
Score = 285 bits (616), Expect = 3e-076
Identities = 104/151 (68%), Positives = 126/151 (83%)
Frame = -2 / +2
Query: 629 AVETCGESFHRYDRYLNFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITEIYHSWQK 450
AVETCGESFHR+D+YLNFSN +I K+FDP+AC WA+GMN+FDL EWR+Q IT IYH WQ
Sbjct: 2 AVETCGESFHRFDKYLNFSNVLIAKNFDPNACGWAYGMNIFDLEEWRKQGITGIYHQWQN 181
Query: 449 LNEDRSLWKLGTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMK 270
LN+DR LWKLGTLP L+TF++ TF L +SWHVLGLGYNP+V+S +IE AAVIHYNGNMK
Sbjct: 182 LNKDRQLWKLGTLPPGLITFYHLTFVLDKSWHVLGLGYNPNVDSTEIERAAVIHYNGNMK 361
Query: 269 PWLEIGLPKFRSYWSKYLDYDQSFLRECNIN 177
PWL+I +PK+R YW+KY+ YD CNI+
Sbjct: 362 PWLDIAIPKYRHYWTKYVKYDXXXXXLCNIS 454
Score = 153 bits (328), Expect = 2e-036
Identities = 82/151 (54%), Positives = 94/151 (62%)
Frame = +1 / -1
Query: 178 LMLHSRRKDWS*SRYLDQ*LRNLGRPISNQGFMLPL*CMTAACSMSLLLTWGL*PRPRTC 357
L+LHS S YL Q* LG IS+ GF+LPL*C+TAA S+S+ T GL*PRPRTC
Sbjct: 453 LILHSXXXX*SYFTYLVQ*CLYLGMAISSHGFILPL*CITAALSISVESTLGL*PRPRTC 274
Query: 358 HDRLRGNVLFQNVTKHKGRVPSFQSDLSSLSFCHE**ISVMFCRLHSARSNTFIPKAQTQ 537
D + NV V GRVP+F + LS FCH *I V+ C LHS+RSN FIP A Q
Sbjct: 273 QDLSKTNVR**KVISPGGRVPNFHNCLSLFRFCH*W*IPVIPCFLHSSRSNIFIPYAHPQ 94
Query: 538 ACGSKLLVIMGFEKFRYRS*RWKLSPQVSTA 630
A GSK + EK RY S KLSPQVSTA
Sbjct: 93 AFGSKFFAMSTLEKLRYLSNL*KLSPQVSTA 1
Score = 130 bits (279), Expect = 1e-029
Identities = 57/149 (38%), Positives = 90/149 (60%)
Frame = +3 / -3
Query: 180 DVAFPKERLVIIQILGPVAPKLG*TNLQPGLHVAIVMYDCSMLNVSAVNMGIVT*TKNMP 359
D+A +I +L PV L ++P H+A+VMY C N S +N+ ++T T+NMP
Sbjct: 451 DIA*LXXXXIIFHVLSPVMSVLRDGYIEPWFHIAVVMYHCCSFNFS*INIRVITKTQNMP 272
Query: 360 *PAEGKCLVPECDQTQRESTKFPE*SIFIKLLPRVINFSYVLPPPFSQVKHIHSKSPNTS 539
+ +C V E DQ +R+ T+ P SIF+ +LP ++N Y L PPF Q+K+IHS P+TS
Sbjct: 271 RFIQDECQVIESDQPRRQGTQLP*LSIFV*ILPLMVNPCYSLFPPFFQIKYIHSICPSTS 92
Query: 540 MWVKTLGDNGI*KIQVSIIAMETLSTSLN 626
+W+K L + + KI++ + M+ ST +
Sbjct: 91 IWIKVLCNEYVRKIEIFVKPMKAFSTGFH 5
>gb|CD028366.1|CD028366 NXNV006B06 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006B06 5' similar to Arabidopsis thaliana sequence
At3g61130 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 465
Score = 285 bits (616), Expect = 3e-076
Identities = 104/151 (68%), Positives = 126/151 (83%)
Frame = -2 / +2
Query: 629 AVETCGESFHRYDRYLNFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITEIYHSWQK 450
AVETCGESFHR+D+YLNFSN +I K+FDP+AC WA+GMN+FDL EWR+Q IT IYH WQ
Sbjct: 2 AVETCGESFHRFDKYLNFSNVLIAKNFDPNACGWAYGMNIFDLEEWRKQGITGIYHQWQN 181
Query: 449 LNEDRSLWKLGTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMK 270
LN+DR LWKLGTLP L+TF++ TF L +SWHVLGLGYNP+V+S +IE AAVIHYNGNMK
Sbjct: 182 LNKDRQLWKLGTLPPGLITFYHLTFVLDKSWHVLGLGYNPNVDSTEIERAAVIHYNGNMK 361
Query: 269 PWLEIGLPKFRSYWSKYLDYDQSFLRECNIN 177
PWL+I +PK+R YW+KY+ YD CNI+
Sbjct: 362 PWLDIAIPKYRHYWTKYVKYDXXXXXLCNIS 454
Score = 148 bits (318), Expect = 4e-035
Identities = 77/137 (56%), Positives = 88/137 (64%)
Frame = +1 / -1
Query: 220 YLDQ*LRNLGRPISNQGFMLPL*CMTAACSMSLLLTWGL*PRPRTCHDRLRGNVLFQNVT 399
YL Q* LG IS+ GF+LPL*C+TAA S+S+ T GL*PRPRTC D + NV V
Sbjct: 411 YLVQ*CLYLGMAISSHGFILPL*CITAALSISVESTLGL*PRPRTCQDLSKTNVR**KVI 232
Query: 400 KHKGRVPSFQSDLSSLSFCHE**ISVMFCRLHSARSNTFIPKAQTQACGSKLLVIMGFEK 579
GRVP+F + LS FCH *I V+ C LHS+RSN FIP A QA GSK + EK
Sbjct: 231 SPGGRVPNFHNCLSLFRFCH*W*IPVIPCFLHSSRSNIFIPYAHPQAFGSKFFAMSTLEK 52
Query: 580 FRYRS*RWKLSPQVSTA 630
RY S KLSPQVSTA
Sbjct: 51 LRYLSNL*KLSPQVSTA 1
Score = 130 bits (279), Expect = 1e-029
Identities = 57/149 (38%), Positives = 90/149 (60%)
Frame = +3 / -3
Query: 180 DVAFPKERLVIIQILGPVAPKLG*TNLQPGLHVAIVMYDCSMLNVSAVNMGIVT*TKNMP 359
D+A +I +L PV L ++P H+A+VMY C N S +N+ ++T T+NMP
Sbjct: 451 DIA*LXXXXIIFHVLSPVMSVLRDGYIEPWFHIAVVMYHCCSFNFS*INIRVITKTQNMP 272
Query: 360 *PAEGKCLVPECDQTQRESTKFPE*SIFIKLLPRVINFSYVLPPPFSQVKHIHSKSPNTS 539
+ +C V E DQ +R+ T+ P SIF+ +LP ++N Y L PPF Q+K+IHS P+TS
Sbjct: 271 RFIQDECQVIESDQPRRQGTQLP*LSIFV*ILPLMVNPCYSLFPPFFQIKYIHSICPSTS 92
Query: 540 MWVKTLGDNGI*KIQVSIIAMETLSTSLN 626
+W+K L + + KI++ + M+ ST +
Sbjct: 91 IWIKVLCNEYVRKIEIFVKPMKAFSTGFH 5
>gb|DR014696.1|DR014696 HEAT1_51_C03.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_C03_A029 3', mRNA sequence
Length = 914
Score = 284 bits (614), Expect = 6e-076
Identities = 103/171 (60%), Positives = 133/171 (77%)
Frame = -2 / +2
Query: 674 LAGLWSINMKGKVNGAVETCGESFHRYDRYLNFSNPIITKSFDPHACVWAFGMNVFDLAE 495
L GLW I+MKGKVNGAVETC SFHRYD+Y+NFS+P+I F+P AC WA+GMN F L
Sbjct: 2 LTGLWEIDMKGKVNGAVETCFGSFHRYDKYMNFSHPLIKARFNPKACGWAYGMNFFHLDA 181
Query: 494 WRRQNITEIYHSWQKLNEDRSLWKLGTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSR 315
WRR+ TE YH WQ LNE+R+LWKLGTLP L+T++ T PL +SWHVLGLGYNP ++
Sbjct: 182 WRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMD 361
Query: 314 DIEHAAVIHYNGNMKPWLEIGLPKFRSYWSKYLDYDQSFLRECNINP*RNL 162
+I +AAV+H+NGNMKPWL+IG+ ++R W+KY+DYD F++ CN *+ +
Sbjct: 362 EIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDYDMEFVQMCNFGH*KKI 514
Score = 141 bits (303), Expect = 5e-033
Identities = 79/164 (48%), Positives = 91/164 (55%)
Frame = +1 / -3
Query: 184 LHSRRKDWS*SRYLDQ*LRNLGRPISNQGFMLPL*CMTAACSMSLLLTWGL*PRPRTCHD 363
LH S*S YL Q R PIS+ GF+ PL TAA +S +L GL PRPRTC D
Sbjct: 492 LHICTNSIS*STYLVQVSRY*FMPISSHGFIFPLK*TTAALRISSILILGLYPRPRTCQD 313
Query: 364 RLRGNVLFQNVTKHKGRVPSFQSDLSSLSFCHE**ISVMFCRLHSARSNTFIPKAQTQAC 543
RG V+ V + G VPSF + S FC * SV F LH+++ FIP AQ QA
Sbjct: 312 LSRGFVVL**VIRPGGNVPSFHNVRFSFRFCQ**YSSVHFSLLHASKWKKFIP*AQPQAL 133
Query: 544 GSKLLVIMGFEKFRYRS*RWKLSPQVSTAPFTFPFMLIDQRPAR 675
G L +I G EKF Y S*RW VSTAP TFPF+ I P R
Sbjct: 132 GLNLALIRG*EKFIYLS*RWNEPKHVSTAPLTFPFISISHNPVR 1
>gb|DR169090.1|DR169090 RTPHOS1_30_A06.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_30_A06_A029 3', mRNA sequence
Length = 710
Score = 247 bits (534), Expect = 7e-065
Identities = 88/153 (57%), Positives = 117/153 (76%)
Frame = -2 / +3
Query: 620 TCGESFHRYDRYLNFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITEIYHSWQKLNE 441
TC SFHRYD+Y+NFS+P+I F+P AC WA+GMN F L WRR+ TE YH WQ LNE
Sbjct: 3 TCFGSFHRYDKYMNFSHPLIKARFNPKACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNE 182
Query: 440 DRSLWKLGTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKPWL 261
+R+LWKLGTLP L+T++ T PL +SWHVLGLGYNP ++ +I +AAV+H+NGNMKPWL
Sbjct: 183 NRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWL 362
Query: 260 EIGLPKFRSYWSKYLDYDQSFLRECNINP*RNL 162
+IG+ ++R W+KY+DYD F++ CN *+ +
Sbjct: 363 DIGMNQYRDTWTKYVDYDMEFVQMCNFGH*KKI 461
Score = 115 bits (245), Expect = 5e-025
Identities = 67/140 (47%), Positives = 78/140 (55%)
Frame = +1 / -2
Query: 184 LHSRRKDWS*SRYLDQ*LRNLGRPISNQGFMLPL*CMTAACSMSLLLTWGL*PRPRTCHD 363
LH S*S YL Q R PIS+ GF+ PL TAA +S +L GL PRPRTC D
Sbjct: 439 LHICTNSIS*STYLVQVSRY*FMPISSHGFIFPLK*TTAALRISSILILGLYPRPRTCQD 260
Query: 364 RLRGNVLFQNVTKHKGRVPSFQSDLSSLSFCHE**ISVMFCRLHSARSNTFIPKAQTQAC 543
RG V+ V + G VPSF + S FC * SV F LH+++ FIP AQ QA
Sbjct: 259 LSRGFVVL**VIRPGGNVPSFHNVRFSFRFCQ**YSSVHFSLLHASKWKKFIP*AQPQAL 80
Query: 544 GSKLLVIMGFEKFRYRS*RW 603
G L +I G EKF Y S*RW
Sbjct: 79 GLNLALIRG*EKFIYLS*RW 20
>gb|BQ107024.1|BQ107024 NXLV085_F11_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV085_F11 5' similar to Arabidopsis thaliana
sequence At2g20807 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 732
Score = 142 bits (305), Expect(2) = 6e-064
Identities = 55/85 (64%), Positives = 71/85 (83%)
Frame = -2 / +1
Query: 788 RPGRYLSILNHLRFYLPEMHPKLDKMVFLDDDIVVKKDLAGLWSINMKGKVNGAVETCGE 609
R +YLS+LNHLRFY+PE++P L+K+VFLDDD+VV+KDL L+SI++ G VNGAVETC E
Sbjct: 196 RNPKYLSMLNHLRFYIPEVYPALEKVVFLDDDVVVQKDLTPLFSIDLHGNVNGAVETCLE 375
Query: 608 SFHRYDRYLNFSNPIITKSFDPHAC 534
+FHRY +YLNFS+P+I FD AC
Sbjct: 376 TFHRYHKYLNFSHPMIRSHFDADAC 450
Score = 122 bits (261), Expect(2) = 6e-064
Identities = 44/70 (62%), Positives = 55/70 (78%)
Frame = -2 / +2
Query: 530 WAFGMNVFDLAEWRRQNITEIYHSWQKLNEDRSLWKLGTLPLCLVTFWNKTFPLSRSWHV 351
WAFGMNVFDL W++ N+T YH WQ+ N DR+LWKLGTLP L+TF+ T PL R WH+
Sbjct: 455 WAFGMNVFDLVAWKKLNVTSRYHYWQEQNVDRTLWKLGTLPPGLLTFYGLTEPLDRRWHI 634
Query: 350 LGLGYNPHVN 321
LGLGY+P+V+
Sbjct: 635 LGLGYDPNVD 664
Score = 68.4 bits (143), Expect(2) = 2e-024
Identities = 37/69 (53%), Positives = 42/69 (60%)
Frame = +1 / -2
Query: 535 QACGSKLLVIMGFEKFRYRS*RWKLSPQVSTAPFTFPFMLIDQRPARSFFTTMSSSRKTI 714
QA SK IMG+EK RY R +S QVSTAP TFP I++ +SF TT SSSRKT
Sbjct: 449 QASASK*ERIMGWEKLRYLWYR*NVSRQVSTAPLTFPCKSIEKSGVKSF*TTTSSSRKTT 270
Query: 715 LSSFGCISG 741
S G SG
Sbjct: 269 FSRAGYTSG 243
Score = 64.3 bits (134), Expect(2) = 2e-024
Identities = 34/73 (46%), Positives = 42/73 (57%)
Frame = +1 / -1
Query: 310 MSLLLTWGL*PRPRTCHDRLRGNVLFQNVTKHKGRVPSFQSDLSSLSFCHE**ISVMFCR 489
+S + T+G *P P C R G+V V+K G+VPSFQS LS+ C * V
Sbjct: 675 ISCMSTFGS*PSPSICQRRSSGSVRP*KVSKPGGKVPSFQSVLSTFCSCQ**YRLVTLSF 496
Query: 490 LHSARSNTFIPKA 528
H+ RSNTFIPKA
Sbjct: 495 FHATRSNTFIPKA 457
>gb|CF396558.1|CF396558 RTDS2_22_C09.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_22_C09_A021 5', mRNA sequence
Length = 797
Score = 244 bits (527), Expect = 6e-064
Identities = 87/133 (65%), Positives = 109/133 (81%)
Frame = -2 / -3
Query: 575 SNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITEIYHSWQKLNEDRSLWKLGTLPLCLV 396
SNP I + FDP+AC WA+GMNVFDL EW++Q+IT IYH WQ +NEDR LWKLGTLP L+
Sbjct: 795 SNPHIARHFDPNACGWAYGMNVFDLKEWKKQDITGIYHKWQNMNEDRVLWKLGTLPPGLI 616
Query: 395 TFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKPWLEIGLPKFRSYWSKYL 216
TF+ T PL +SWHVLGLGYNP V+ +I++AAV+HYNGNMKPWLE+ + K+R YW+KY+
Sbjct: 615 TFYGLTHPLDKSWHVLGLGYNPSVDRLEIDNAAVVHYNGNMKPWLELAMTKYRPYWTKYI 436
Query: 215 DYDQSFLRECNIN 177
YD FL++CNIN
Sbjct: 435 KYDHPFLQQCNIN 397
Score = 119 bits (254), Expect = 3e-026
Identities = 60/106 (56%), Positives = 66/106 (62%)
Frame = +1 / +2
Query: 259 SNQGFMLPL*CMTAACSMSLLLTWGL*PRPRTCHDRLRGNVLFQNVTKHKGRVPSFQSDL 438
SNQGFM PL* TAA S+S T GL P+P TC D +G V NV G VPSF + L
Sbjct: 479 SNQGFMFPL**TTAALSISKRSTLGLYPKPSTCQDLSKGWVKP*NVINPGGSVPSFHNTL 658
Query: 439 SSLSFCHE**ISVMFCRLHSARSNTFIPKAQTQACGSKLLVIMGFE 576
SS FCH * I V+ C HS RSNTFIP AQ QA GSK L + G E
Sbjct: 659 SSFMFCHL*YIPVISCFFHSLRSNTFIPYAQPQALGSKCLAMCGLE 796
>gb|DR053011.1|DR053011 RTCA1_8_A01.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_8_A01_A029 5', mRNA sequence
Length = 802
Score = 237 bits (511), Expect = 1e-061
Identities = 89/134 (66%), Positives = 111/134 (82%)
Frame = -2 / +3
Query: 788 RPGRYLSILNHLRFYLPEMHPKLDKMVFLDDDIVVKKDLAGLWSINMKGKVNGAVETCGE 609
R +YLS+LNHLRFYLPEM+PKL +++FLDDD+VV+KDL GLW I+M+GKVNGAVETC
Sbjct: 396 RNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMEGKVNGAVETCFG 575
Query: 608 SFHRYDRYLNFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITEIYHSWQKLNEDRSL 429
SFHRYD+Y+NFS+P+I F+P AC WA+GMN F L WRR+ TE YH WQ LNE+R+L
Sbjct: 576 SFHRYDKYMNFSHPLIKARFNPKACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTL 755
Query: 428 WKLGTLPLCLVTFW 387
WKLGTLP L+T++
Sbjct: 756 WKLGTLPPGLITYY 797
Score = 112 bits (240), Expect = 2e-024
Identities = 59/116 (50%), Positives = 67/116 (57%)
Frame = +1 / -1
Query: 394 VTKHKGRVPSFQSDLSSLSFCHE**ISVMFCRLHSARSNTFIPKAQTQACGSKLLVIMGF 573
V + G VPSF + S FC * SV F LH+++ FIP AQ QA G L +I G
Sbjct: 790 VIRPGGNVPSFHNVRFSFRFCQ**YSSVHFSLLHASKWKKFIP*AQPQALGLNLALIRG* 611
Query: 574 EKFRYRS*RWKLSPQVSTAPFTFPFMLIDQRPARSFFTTMSSSRKTILSSFGCISG 741
EKF Y S*RW VSTAP TFP + I P RSF TT SSSR I +FG ISG
Sbjct: 610 EKFIYLS*RWNEPKHVSTAPLTFPSISISHNPVRSF*TTTSSSRNKIRCNFGYISG 443
>gb|DR161477.1|DR161477 RTFE1_12_B06.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_12_B06_A029 3', mRNA sequence
Length = 482
Score = 235 bits (508), Expect = 3e-061
Identities = 88/130 (67%), Positives = 109/130 (83%)
Frame = -2 / -2
Query: 779 RYLSILNHLRFYLPEMHPKLDKMVFLDDDIVVKKDLAGLWSINMKGKVNGAVETCGESFH 600
+YLS+LNHLRFYLPEM+PKL +++FLDDD+VV+KDL GLW I+M+GKVNGAVETC SFH
Sbjct: 391 KYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMEGKVNGAVETCFGSFH 212
Query: 599 RYDRYLNFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITEIYHSWQKLNEDRSLWKL 420
RYD+Y+NFS+P+I F+P AC WA+GMN F L WRR+ TE YH WQ LNE+R+LWKL
Sbjct: 211 RYDKYMNFSHPLIKARFNPKACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKL 32
Query: 419 GTLPLCLVTF 390
GTLP L+T+
Sbjct: 31 GTLPPGLITY 2
Score = 112 bits (240), Expect = 2e-024
Identities = 59/116 (50%), Positives = 67/116 (57%)
Frame = +1 / +3
Query: 394 VTKHKGRVPSFQSDLSSLSFCHE**ISVMFCRLHSARSNTFIPKAQTQACGSKLLVIMGF 573
V + G VPSF + S FC * SV F LH+++ FIP AQ QA G L +I G
Sbjct: 6 VIRPGGNVPSFHNVRFSFRFCQ**YSSVHFSLLHASKWKKFIP*AQPQALGLNLALIRG* 185
Query: 574 EKFRYRS*RWKLSPQVSTAPFTFPFMLIDQRPARSFFTTMSSSRKTILSSFGCISG 741
EKF Y S*RW VSTAP TFP + I P RSF TT SSSR I +FG ISG
Sbjct: 186 EKFIYLS*RWNEPKHVSTAPLTFPSISISHNPVRSF*TTTSSSRNKIRCNFGYISG 353
Score = 102 bits (217), Expect = 4e-021
Identities = 51/124 (41%), Positives = 76/124 (61%)
Frame = +3 / +2
Query: 393 CDQTQRESTKFPE*SIFIKLLPRVINFSYVLPPPFSQVKHIHSKSPNTSMWVKTLGDNGI 572
CDQ + P+ +I +++LP VI FS +LP P QV+ IHS SP TS+ +++ D +
Sbjct: 5 CDQAWW*CPQLPQCTILVQVLPVVIFFSTLLPSPCIQVEEIHSISPTTSLGIESCLDQRM 184
Query: 573 *KIQVSIIAMETLSTSLNSTVYLPLHVD*PKASQILLYYDVIIKKDHLVKLWMHLR*VKA 752
+I + II ME L+S V L H+ P + Q+LL ++II K V LW+HLR +KA
Sbjct: 185 REIHILIITME*TKACLHSPVNLSFHIYLP*SRQVLLNNNIII*KQDPV*LWIHLRQIKA 364
Query: 753 EMIE 764
+MI+
Sbjct: 365 QMIQ 376
>gb|CX713265.1|CX713265 RTPQ1_8_B07.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_8_B07_A032 3', mRNA sequence
Length = 702
Score = 232 bits (502), Expect = 2e-060
Identities = 82/145 (56%), Positives = 111/145 (76%)
Frame = -2 / +2
Query: 596 YDRYLNFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITEIYHSWQKLNEDRSLWKLG 417
YD+Y+NFS+P+I F+P AC WA+GMN F L WRR+ TE YH WQ LNE+R+LWKLG
Sbjct: 2 YDKYMNFSHPLIKARFNPKACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLG 181
Query: 416 TLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKPWLEIGLPKFR 237
TLP L+T++ T PL +SWHVLGLGYNP ++ +I +AAV+H+NGNMKPWL+IG+ ++R
Sbjct: 182 TLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYR 361
Query: 236 SYWSKYLDYDQSFLRECNINP*RNL 162
W+KY+DYD F++ CN *+ +
Sbjct: 362 DTWTKYVDYDMEFVQMCNFGH*KKI 436
Score = 107 bits (229), Expect = 8e-023
Identities = 65/138 (47%), Positives = 76/138 (55%)
Frame = +1 / -1
Query: 184 LHSRRKDWS*SRYLDQ*LRNLGRPISNQGFMLPL*CMTAACSMSLLLTWGL*PRPRTCHD 363
LH S*S YL Q R PIS+ GF+ PL TAA +S +L GL PRPRTC D
Sbjct: 414 LHICTNSIS*STYLVQVSRY*FMPISSHGFIFPLK*TTAALRISSILILGLYPRPRTCQD 235
Query: 364 RLRGNVLFQNVTKHKGRVPSFQSDLSSLSFCHE**ISVMFCRLHSARSNTFIPKAQTQAC 543
RG V+ V + G VPSF + S FC * SV F LH+++ FIP AQ QA
Sbjct: 234 LSRGFVVL**VIRPGGNVPSFHNVRFSFRFCQ**YSSVHFSLLHASKWKKFIP*AQPQAL 55
Query: 544 GSKLLVIMGFEKFRYRS* 597
G L +I G EKF Y S*
Sbjct: 54 GLNLALIRG*EKFIYLS* 1
>gb|CX651405.1|CX651405 COLD1_52_D12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_52_D12_A029 3', mRNA sequence
Length = 659
Score = 123 bits (264), Expect(3) = 4e-051
Identities = 43/92 (46%), Positives = 59/92 (64%)
Frame = -2 / +3
Query: 455 QKLNEDRSLWKLGTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGN 276
+ LN + LW++GTLP L+ F P+ SWH+LGLGY P N ++ AAVIHYNG
Sbjct: 222 KNLNSNLRLWRMGTLPPALIAFNGLVHPIDPSWHMLGLGYQPRTNLDSVQSAAVIHYNGR 401
Query: 275 MKPWLEIGLPKFRSYWSKYLDYDQSFLRECNI 180
KPWL+I + R W+KY+D+ F++ CNI
Sbjct: 402 AKPWLDIAFHELRPLWAKYVDFSDEFIKRCNI 497
Score = 87.2 bits (184), Expect(3) = 4e-051
Identities = 30/57 (52%), Positives = 38/57 (66%)
Frame = -2 / +3
Query: 599 RYDRYLNFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITEIYHSWQKLNEDRSL 429
R+ Y NFS+P+I +FDP C WA+GMN+ DL WRR NI E YH W K N + +L
Sbjct: 72 RFKNYFNFSHPLIANNFDPEQCAWAYGMNILDLQAWRRTNIKETYHYWLKKNLNSNL 242
Score = 29.5 bits (58), Expect(3) = 4e-051
Identities = 10/13 (76%), Positives = 13/13 (100%)
Frame = -2 / +3
Query: 653 NMKGKVNGAVETC 615
+++GKVNGAVETC
Sbjct: 3 DLQGKVNGAVETC 41
>gb|DR744023.1|DR744023 RTCU1_19_F03.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_19_F03_A029 5', mRNA sequence
Length = 764
Score = 128 bits (274), Expect(2) = 4e-048
Identities = 43/92 (46%), Positives = 62/92 (67%)
Frame = -2 / -2
Query: 455 QKLNEDRSLWKLGTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGN 276
+ LN + +LW+LGTLP L+ F P+ SWH+LGLGY P + ++ AAVIHYNG
Sbjct: 631 ENLNSNLTLWRLGTLPPALIAFNGHVHPIDPSWHMLGLGYQPETDLNNVRKAAVIHYNGQ 452
Query: 275 MKPWLEIGLPKFRSYWSKYLDYDQSFLRECNI 180
KPWL+I P+ R +W+KY++Y F++ C+I
Sbjct: 451 AKPWLDIAFPELRPFWTKYINYSNEFIKNCHI 356
Score = 83.5 bits (176), Expect(2) = 4e-048
Identities = 29/51 (56%), Positives = 38/51 (74%)
Frame = -2 / -2
Query: 581 NFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITEIYHSWQKLNEDRSL 429
NFS+P+I+KSF+P C WA+GMN+FDL WR+ NI E YH W K N + +L
Sbjct: 763 NFSHPLISKSFNPEQCAWAYGMNIFDLQAWRKTNIRETYHYWLKENLNSNL 611
>gb|AI812705.1|AI812705 18B3 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 522
Score = 122 bits (262), Expect(3) = 2e-043
Identities = 43/84 (51%), Positives = 61/84 (72%)
Frame = -2 / +3
Query: 428 WKLGTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKPWLEIGL 249
W+ GTLP L+TF+N T L SW +GLG++ ++ DIE + V+HYNGN+KPWLEIG+
Sbjct: 216 WRFGTLPASLITFYNMTHRLEDSWLSVGLGHDFGIDQLDIEKSPVLHYNGNLKPWLEIGI 395
Query: 248 PKFRSYWSKYLDYDQSFLRECNIN 177
K++ YW+KYL + F+ ECN+N
Sbjct: 396 NKYKPYWAKYLKQEGQFMLECNVN 467
Score = 58.8 bits (122), Expect(3) = 2e-043
Identities = 17/43 (39%), Positives = 29/43 (67%)
Frame = -2 / +3
Query: 575 SNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITEIYHSWQKL 447
S+ + FD +AC W G+N+ DL +WR+Q++T++Y W K+
Sbjct: 66 SSKLFPNGFDGNACAWMSGLNIIDLQQWRKQDLTKVYRRWLKM 194
Score = 33.1 bits (66), Expect(3) = 2e-043
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -2 / +3
Query: 641 KVNGAVETCGESFHRYDRYLNFS 573
KVNGA+E C FH +YLN S
Sbjct: 3 KVNGAMEICEVRFHHLRKYLNSS 71
>gb|BI202957.1|BI202957 NXPV_093_C03_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_093_C03 5' similar to Arabidopsis
thaliana sequence At3g25140 glycosyl transferase,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 326
Score = 169 bits (364), Expect = 2e-041
Identities = 61/107 (57%), Positives = 79/107 (73%)
Frame = -2 / +1
Query: 527 AFGMNVFDLAEWRRQNITEIYHSWQKLNEDRSLWKLGTLPLCLVTFWNKTFPLSRSWHVL 348
A+GMN F L WRR+ TE YH WQ LNE+R+LWKLGTLP L+T++ T PL +SWHVL
Sbjct: 1 AYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVL 180
Query: 347 GLGYNPHVNSRDIEHAAVIHYNGNMKPWLEIGLPKFRSYWSKYLDYD 207
GLGYNP ++ +I +A V H+NGNMKPWL+ + ++R W+KY YD
Sbjct: 181 GLGYNPSISMDEIRNAXVXHFNGNMKPWLDXXMNQYRDTWTKYXXYD 321
>gb|DR078574.1|DR078574 RTFEPL1_5_C09.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_5_C09_A029 5', mRNA sequence
Length = 822
Score = 168 bits (362), Expect = 4e-041
Identities = 59/109 (54%), Positives = 84/109 (77%)
Frame = -2 / -3
Query: 503 LAEWRRQNITEIYHSWQKLNEDRSLWKLGTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHV 324
L W++ N+T YH WQ+ N DR+LWKLGTLP L+TF+ T PL R WH+LGLGY+P+V
Sbjct: 820 LVAWKKLNVTSRYHYWQEQNVDRTLWKLGTLPPGLLTFYGLTEPLDRRWHILGLGYDPNV 641
Query: 323 NSRDIEHAAVIHYNGNMKPWLEIGLPKFRSYWSKYLDYDQSFLRECNIN 177
+ + IE AV+HYNGNMKPWL++ + +++S+W KY++Y FL++CNI+
Sbjct: 640 DMQLIESGAVLHYNGNMKPWLKLAMNRYKSFWEKYVNYLHPFLQKCNIH 494
>gb|BX249940.1|BX249940 BX249940 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP030E08, mRNA sequence
Length = 629
Score = 167 bits (360), Expect = 7e-041
Identities = 58/102 (56%), Positives = 80/102 (78%)
Frame = -2 / -1
Query: 467 YHSWQKLNEDRSLWKLGTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIH 288
YH WQ LNE+R+LWKLGTLP L+T++ T PL +SWHVLGLGYNP ++ +I +AAV+H
Sbjct: 629 YHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVH 450
Query: 287 YNGNMKPWLEIGLPKFRSYWSKYLDYDQSFLRECNINP*RNL 162
+NGNMKPWL+IG+ ++R W+KY+DYD F++ CN *+ +
Sbjct: 449 FNGNMKPWLDIGMNQYRDTWTKYVDYDMEFIQMCNFGH*KKI 324
>gb|DT637161.1|DT637161 EST1152092 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMH039 3' end, mRNA sequence
Length = 879
Score = 152 bits (327), Expect = 2e-036
Identities = 59/91 (64%), Positives = 75/91 (82%)
Frame = -2 / +1
Query: 788 RPGRYLSILNHLRFYLPEMHPKLDKMVFLDDDIVVKKDLAGLWSINMKGKVNGAVETCGE 609
R +YLS+LNHLRFY+PE++P L+K+VFLD D+VV+KDL L+SI++ G VNGAVETC E
Sbjct: 535 RNPKYLSMLNHLRFYIPEVYPALEKVVFLDHDVVVQKDLTPLFSIDLHGNVNGAVETCLE 714
Query: 608 SFHRYDRYLNFSNPIITKSFDPHACVWAFGM 516
+FHRY +YLNFS+P+I FD AC WAFGM
Sbjct: 715 TFHRYHKYLNFSHPMIRSHFDADACGWAFGM 807
>gb|BF221350.1|BF221350 NXCI_157_F07_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_157_F07 5' similar to Arabidopsis
thaliana sequence At5g15470 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 554
Score = 100 bits (214), Expect(2) = 7e-036
Identities = 38/55 (69%), Positives = 48/55 (87%)
Frame = -2 / +3
Query: 779 RYLSILNHLRFYLPEMHPKLDKMVFLDDDIVVKKDLAGLWSINMKGKVNGAVETC 615
+Y SILNH+R YLPE+ P L+K+VFLDDDIVV+ DL+ LW I+++GKVNGAVETC
Sbjct: 216 KYFSILNHVRIYLPELFPNLEKVVFLDDDIVVQHDLSPLWDIDLQGKVNGAVETC 380
Score = 70.3 bits (147), Expect(2) = 7e-036
Identities = 24/44 (54%), Positives = 29/44 (65%)
Frame = -2 / +3
Query: 587 YLNFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITEIYHSW 456
Y NFS+P+I +FDP C WA+GMN+ DL R NI E YH W
Sbjct: 423 YFNFSHPLIXXNFDPXQCAWAYGMNILDLQAXRXXNIKETYHYW 554
>gb|DR744317.1|DR744317 RTCU1_21_E03.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_21_E03_A029 5', mRNA sequence
Length = 749
Score = 103 bits (220), Expect(2) = 1e-034
Identities = 39/58 (67%), Positives = 50/58 (86%)
Frame = -2 / +3
Query: 788 RPGRYLSILNHLRFYLPEMHPKLDKMVFLDDDIVVKKDLAGLWSINMKGKVNGAVETC 615
R +Y+SILNHLR YLPE+ P L K+VFLDDDIV+++DL+ LW I+++GKVNGAVETC
Sbjct: 438 RSPKYMSILNHLRIYLPELFPNLHKVVFLDDDIVIQRDLSPLWDIDLQGKVNGAVETC 611
Score = 63.4 bits (132), Expect(2) = 1e-034
Identities = 20/36 (55%), Positives = 27/36 (75%)
Frame = -2 / +3
Query: 599 RYDRYLNFSNPIITKSFDPHACVWAFGMNVFDLAEW 492
R+ Y NFS+P+I ++FDP C WA+GMN+FDL W
Sbjct: 642 RFRTYFNFSHPLIAQNFDPQQCPWAYGMNIFDLQAW 749
>gb|BQ697933.1|BQ697933 NXPV_062_F07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_062_F07 5' similar to Arabidopsis
thaliana sequence At5g15470 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 517
Score = 100 bits (214), Expect(2) = 3e-033
Identities = 38/55 (69%), Positives = 48/55 (87%)
Frame = -2 / +1
Query: 779 RYLSILNHLRFYLPEMHPKLDKMVFLDDDIVVKKDLAGLWSINMKGKVNGAVETC 615
+Y SILNH+R YLPE+ P L+K+VFLDDDIVV+ DL+ LW I+++GKVNGAVETC
Sbjct: 196 KYFSILNHVRIYLPELFPNLEKVVFLDDDIVVQHDLSPLWDIDLQGKVNGAVETC 360
Score = 61.6 bits (128), Expect(2) = 3e-033
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = -2 / +1
Query: 587 YLNFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNI 477
Y NFS+P+I +FDP C WA+GMN+ DL W NI
Sbjct: 403 YFNFSHPLIADNFDPEQCAWAYGMNILDLQAWXXXNI 513
>gb|DT633602.1|DT633602 EST1148533 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFW66 3' end, mRNA sequence
Length = 879
Score = 119 bits (255), Expect(3) = 8e-033
Identities = 43/72 (59%), Positives = 56/72 (77%)
Frame = -2 / +3
Query: 692 IVVKKDLAGLWSINMKGKVNGAVETCGESFHRYDRYLNFSNPIITKSFDPHACVWAFGMN 513
++ +KDL GLW I+M+GKVNGAVETC SFHRYD+Y+NFS+P+I F+P AC WA+GMN
Sbjct: 621 LLFQKDLTGLWEIDMEGKVNGAVETCFGSFHRYDKYMNFSHPLIKARFNPKACGWAYGMN 800
Query: 512 VFDLAEWRRQNI 477
F L WR+ +
Sbjct: 801 FFHLDAWRKGEV 836
Score = 31.8 bits (63), Expect(3) = 8e-033
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2 / +1
Query: 488 RQNITEIYHSWQKLNEDR 435
R+ TE YH WQ LNE+R
Sbjct: 826 REKCTEEYHYWQNLNENR 879
Score = 27.2 bits (53), Expect(3) = 8e-033
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -3 / +3
Query: 760 IISAFTYLRCIQSLTRWSFLMM 695
II AF LRCIQS T F MM
Sbjct: 552 IICAFICLRCIQSHTGSCF*MM 617
>gb|DR015777.1|DR015777 STRS1_5_C07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_C07_A034 5', mRNA sequence
Length = 716
Score = 139 bits (299), Expect = 2e-032
Identities = 49/91 (53%), Positives = 69/91 (75%)
Frame = -2 / +1
Query: 434 SLWKLGTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKPWLEI 255
+LWKLGTLP L+TF+ T PL +SWHV GLGYNP ++ +I +AAV+H+NG MKPWL+I
Sbjct: 4 TLWKLGTLPPGLITFYKTTKPLDKSWHVFGLGYNPSISMDEIRNAAVVHFNGFMKPWLDI 183
Query: 254 GLPKFRSYWSKYLDYDQSFLRECNINP*RNL 162
G+ ++R W+KY+DYD F++ CN *+ +
Sbjct: 184 GMNQYRDTWTKYVDYDMEFVQMCNFGH*KKI 276
>gb|DR015694.1|DR015694 STRS1_5_C07.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_C07_A034 3', mRNA sequence
Length = 690
Score = 138 bits (296), Expect = 5e-032
Identities = 47/89 (52%), Positives = 68/89 (76%)
Frame = -2 / +1
Query: 428 WKLGTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKPWLEIGL 249
WKLGTLP L+T++ T PL +SWHVLG GYNP ++ +I +AAV+H+NGNMKPWL+IG+
Sbjct: 1 WKLGTLPPGLITYYKTTKPLDKSWHVLGFGYNPSISMDEIRNAAVVHFNGNMKPWLDIGM 180
Query: 248 PKFRSYWSKYLDYDQSFLRECNINP*RNL 162
++R W+KY+D+D F++ CN *+ +
Sbjct: 181 NQYRDTWTKYVDFDMEFVQMCNFGH*KKI 267
>gb|BX250554.1|BX250554 BX250554 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP038D10, mRNA sequence
Length = 370
Score = 124 bits (265), Expect = 9e-028
Identities = 43/92 (46%), Positives = 59/92 (64%)
Frame = -2 / +2
Query: 455 QKLNEDRSLWKLGTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGN 276
+ LN + LW++GTLP L+ F P+ SWH+LGLGY P N ++ AAVIHYNG
Sbjct: 38 KNLNSNLRLWRMGTLPPALIAFNGLVHPIDSSWHMLGLGYQPRTNLDSVQSAAVIHYNGR 217
Query: 275 MKPWLEIGLPKFRSYWSKYLDYDQSFLRECNI 180
KPWL+I + R W+KY+D+ F++ CNI
Sbjct: 218 AKPWLDIAFHELRPLWAKYVDFSDEFIKRCNI 313
>gb|DR692110.1|DR692110 EST1082197 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADI14 3' end, mRNA sequence
Length = 741
Score = 122 bits (260), Expect = 4e-027
Identities = 47/71 (66%), Positives = 61/71 (85%)
Frame = -2 / +2
Query: 788 RPGRYLSILNHLRFYLPEMHPKLDKMVFLDDDIVVKKDLAGLWSINMKGKVNGAVETCGE 609
R +YLS+LNHLRFY+PE++P L+K+VFLD D+VV+KDL L+SI++ G VNGAVETC E
Sbjct: 527 RNPKYLSMLNHLRFYIPEVYPALEKVVFLDHDVVVQKDLTPLFSIDLHGNVNGAVETCLE 706
Query: 608 SFHRYDRYLNF 576
+FHRY +YLNF
Sbjct: 707 TFHRYHKYLNF 739
>gb|DR060177.1|DR060177 RTNIT1_26_E10.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_26_E10_A029 3', mRNA sequence
Length = 793
Score = 118 bits (253), Expect = 4e-026
Identities = 40/76 (52%), Positives = 58/76 (76%)
Frame = -2 / +3
Query: 389 WNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKPWLEIGLPKFRSYWSKYLDY 210
+ T PL +SWHVLGLGYNP ++ +I +AAV+H+NGNMKPWL+IG+ ++R W+KY+DY
Sbjct: 3 YKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDY 182
Query: 209 DQSFLRECNINP*RNL 162
D F++ CN *+ +
Sbjct: 183 DMEFVQMCNFGH*KKI 230
>gb|BQ698491.1|BQ698491 NXPV_070_E11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_070_E11 5' similar to Arabidopsis
thaliana sequence At3g01040 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 439
Score = 91.8 bits (194), Expect(2) = 4e-026
Identities = 35/55 (63%), Positives = 44/55 (80%)
Frame = -2 / +1
Query: 779 RYLSILNHLRFYLPEMHPKLDKMVFLDDDIVVKKDLAGLWSINMKGKVNGAVETC 615
+Y SILNH+R YLPE+ P L+K+VFLDDDIVV+ DL+ LW I++ NGAVETC
Sbjct: 148 KYFSILNHVRIYLPELFPNLEKIVFLDDDIVVQHDLSPLWDIDLXXXXNGAVETC 312
Score = 46.4 bits (95), Expect(2) = 4e-026
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2 / +1
Query: 596 YDRYLNFSNPIITKSFDPHACVWAFGMNVFD 504
+ Y NFS+P+I +F C WA+GMN+ D
Sbjct: 346 FKNYFNFSHPLIANNFXXXXCAWAYGMNILD 438
>gb|BG319249.1|BG319249 NXPV_019_E12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_019_E12 5' similar to Arabidopsis
thaliana sequence At3g61130 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 365
Score = 116 bits (249), Expect = 1e-025
Identities = 42/81 (51%), Positives = 59/81 (72%)
Frame = -2 / +1
Query: 419 GTLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKPWLEIGLPKF 240
GTLP L+TF+N T L SW +GLG++ ++ DIE + V+HYNGN+KPWLEIG+ K+
Sbjct: 4 GTLPASLITFYNMTHRLEDSWLSVGLGHDFGIDQLDIEKSPVLHYNGNLKPWLEIGINKY 183
Query: 239 RSYWSKYLDYDQSFLRECNIN 177
+ YW+KYL + F+ ECN+N
Sbjct: 184 KPYWAKYLKQEGQFMLECNVN 246
>gb|BQ197959.1|BQ197959 NXLV123_C04_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV123_C04 5' similar to Arabidopsis thaliana
sequence At3g25140 glycosyl transferase, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 442
Score = 116 bits (249), Expect = 1e-025
Identities = 45/66 (68%), Positives = 54/66 (81%)
Frame = -2 / +1
Query: 788 RPGRYLSILNHLRFYLPEMHPKLDKMVFLDDDIVVKKDLAGLWSINMKGKVNGAVETCGE 609
R +YLS+LNHLRFYLPEM+PK +++FLDDD+VV+KDL GLW I M+GKVNGA ETC
Sbjct: 232 RNPKYLSMLNHLRFYLPEMYPKFHRILFLDDDVVVQKDLTGLWEIXMEGKVNGAAETCFG 411
Query: 608 SFHRYD 591
SFH D
Sbjct: 412 SFHXXD 429
>gb|BX252912.1|BX252912 BX252912 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP074G08, mRNA sequence
Length = 317
Score = 108 bits (231), Expect = 4e-023
Identities = 38/79 (48%), Positives = 50/79 (63%)
Frame = -2 / +2
Query: 416 TLPLCLVTFWNKTFPLSRSWHVLGLGYNPHVNSRDIEHAAVIHYNGNMKPWLEIGLPKFR 237
TLP L+ F P+ SWH+LGLGY P N ++ AAVIHYNG KPWL+I + R
Sbjct: 2 TLPPALIAFNGLVHPIDSSWHMLGLGYQPRTNLDSVQSAAVIHYNGRAKPWLDIAFHELR 181
Query: 236 SYWSKYLDYDQSFLRECNI 180
W+KY+D+ F++ CNI
Sbjct: 182 PLWAKYVDFSDEFIKRCNI 238
>gb|CX651478.1|CX651478 COLD1_52_D12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_52_D12_A029 5', mRNA sequence
Length = 271
Score = 87.2 bits (184), Expect(3) = 4e-021
Identities = 30/57 (52%), Positives = 38/57 (66%)
Frame = -2 / +1
Query: 599 RYDRYLNFSNPIITKSFDPHACVWAFGMNVFDLAEWRRQNITEIYHSWQKLNEDRSL 429
R+ Y NFS+P+I +FDP C WA+GMN+ DL WRR NI E YH W K N + +L
Sbjct: 58 RFKNYFNFSHPLIANNFDPEQCAWAYGMNILDLQAWRRTNIKETYHYWLKKNLNSNL 228
Score = 27.6 bits (54), Expect(3) = 4e-021
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2 / +1
Query: 455 QKLNEDRSLWKLGTLPLCLV 396
+ LN + LW++GTLP L+
Sbjct: 208 KNLNSNLRLWRMGTLPPALI 267
Score = 23.1 bits (44), Expect(3) = 4e-021
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -2 / +1
Query: 641 KVNGAVETC 615
+VNGAVETC
Sbjct: 1 QVNGAVETC 27
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 484,849,762
Number of Sequences: 355925
Number of extensions: 7823305
Number of successful extensions: 47462
Number of sequences better than 1.0e-020: 46
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 11484458385
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)