TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 5351892.2.1
         (466 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DR080071.1|DR080071  RTFEPL1_20_B11.b1_A029 Roots plus ad...   121   3e-027

>gb|DR080071.1|DR080071 RTFEPL1_20_B11.b1_A029 Roots plus added iron Pinus taeda cDNA clone
           RTFEPL1_20_B11_A029 3', mRNA sequence
          Length = 753

 Score =  121 bits (259), Expect = 3e-027
 Identities = 43/72 (59%), Positives = 51/72 (70%)
 Frame = +3 / +2

                                                                       
Query: 12  GLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVS 191
           G KPWI+ K EN    DPPC + MS+EPCFH  PFYDC+A+K  D GKV PYV+HCEDV 
Sbjct: 503 GTKPWILFKPENDTAADPPCRKVMSMEPCFHAPPFYDCQAKKGIDTGKVFPYVKHCEDVP 682

                       
Query: 192 WGLKIVDQTHL* 227
           WG+  V+   L*
Sbjct: 683 WGINPVENDEL* 718



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 228,398,523
Number of Sequences: 355925
Number of extensions: 2834388
Number of successful extensions: 43598
Number of sequences better than 1.0e-020: 1
length of database: 72,425,745
effective HSP length: 50
effective length of database: 54,629,495
effective search space used: 5681467480
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)