TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 5110719.2.1
         (581 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BQ699264.1|BQ699264  NXRV121_E06_F NXRV (Nsf Xylem Root w...   102   1e-026
gb|DR010807.1|DR010807  HEAT1_1_A04.g1_A029 Root at 37 C for...    88   1e-025
gb|AY705797.1|  Pinus halepensis clone 11r mRNA sequence           79   9e-023
gb|CO163149.1|CO163149  FLD1_39_F07.g1_A029 Root flooded Pin...    74   8e-022

>gb|BQ699264.1|BQ699264 NXRV121_E06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
           clone NXRV121_E06 5' similar to Arabidopsis thaliana
           sequence At2g01060 transfactor-like protein see
           http://mips.gsf.de/proj/thal/db/index.html, mRNA
           sequence
          Length = 557

 Score =  102 bits (218), Expect(2) = 1e-026
 Identities = 41/61 (67%), Positives = 53/61 (86%)
 Frame = +3 / +2

                                                                       
Query: 3   LTIYHVKSHLQKYRLAKYIPDASTDGNKTDNKDPGDLLAGLEGSSGLQISEALKLQMEVQ 182
           LTIYHVKSHLQKYRL+KY+PD+  DG K++ K+  D+L+ LE +SG+QISEAL++QMEVQ
Sbjct: 122 LTIYHVKSHLQKYRLSKYLPDSMGDGLKSEKKESTDILSNLEAASGVQISEALQMQMEVQ 301

            
Query: 183 K 185
           K
Sbjct: 302 K 304




 Score = 41.8 bits (85), Expect(2) = 1e-026
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +3 / +3

                             
Query: 237 AQGKYLQKIIEEQQRLTG 290
           AQGKYLQKIIEEQQRL+G
Sbjct: 357 AQGKYLQKIIEEQQRLSG 410



>gb|DR010807.1|DR010807 HEAT1_1_A04.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
           HEAT1_1_A04_A029 5', mRNA sequence
          Length = 757

 Score = 87.7 bits (185), Expect(3) = 1e-025
 Identities = 36/60 (60%), Positives = 46/60 (76%)
 Frame = +3 / +2

                                                                       
Query: 3   LTIYHVKSHLQKYRLAKYIPDASTDGNKTDNKDPGDLLAGLEGSSGLQISEALKLQMEVQ 182
           LTIY VKSHLQK+RLA+YIP +  DG  T  K+   +L+ L+  SGLQI++ALK+QMEVQ
Sbjct: 263 LTIYQVKSHLQKFRLARYIPGSMDDGQNTGRKEAPGILSNLDARSGLQITDALKMQMEVQ 442




 Score = 37.3 bits (75), Expect(3) = 1e-025
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +3 / +2

                                               
Query: 237 AQGKYLQKIIEEQQRLTGVKSETPAGGASVTVSSDQ 344
           AQGKY QKI+EE QR+ GV  ++      +++ S +
Sbjct: 497 AQGKYFQKILEEHQRIGGVLKDSANSVECLSIMSGE 604




 Score = 32.7 bits (65), Expect(3) = 1e-025
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1 / +3

                             
Query: 166 CRWRSKSGCTNS*KYKGS 219
           C+WR + GC NS +Y+G+
Sbjct: 426 CKWRCRHGCMNSLRYRGN 479



>gb|AY705797.1| Pinus halepensis clone 11r mRNA sequence
          Length = 1262

 Score = 78.5 bits (165), Expect(3) = 9e-023
 Identities = 32/56 (57%), Positives = 42/56 (75%)
 Frame = +3 / +3

                                                                   
Query: 3   LTIYHVKSHLQKYRLAKYIPDASTDGNKTDNKDPGDLLAGLEGSSGLQISEALKLQ 170
           LTIY VKSHLQK+RLA+YIP +  DG  T  K+   +L+ L+  SGLQI++ALK+Q
Sbjct: 348 LTIYQVKSHLQKFRLARYIPGSMDDGQNTGRKEAPGILSXLDARSGLQITDALKMQ 515




 Score = 41.4 bits (84), Expect(3) = 9e-023
 Identities = 17/36 (47%), Positives = 24/36 (66%)
 Frame = +3 / +1

                                               
Query: 237 AQGKYLQKIIEEQQRLTGVKSETPAGGASVTVSSDQ 344
           AQGKY QKI+EEQQRL GV  ++      +++ S +
Sbjct: 580 AQGKYFQKILEEQQRLGGVLKDSANSVECISIMSGE 687




 Score = 28.1 bits (55), Expect(3) = 9e-023
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1 / +3

                            
Query: 169 RWRSKSGCTNS*KYKGS 219
           +WR + GC NS +Y+G+
Sbjct: 513 QWRCRHGCMNSLRYRGN 563



>gb|CO163149.1|CO163149 FLD1_39_F07.g1_A029 Root flooded Pinus taeda cDNA clone
           FLD1_39_F07_A029 5', mRNA sequence
          Length = 874

 Score = 74.4 bits (156), Expect(3) = 8e-022
 Identities = 30/53 (56%), Positives = 40/53 (75%)
 Frame = +3 / +2

                                                                
Query: 24  SHLQKYRLAKYIPDASTDGNKTDNKDPGDLLAGLEGSSGLQISEALKLQMEVQ 182
           SHLQK+RLA+YIP +  DG  T  K+   +L+ L+  SGLQI++ALK+QMEVQ
Sbjct: 2   SHLQKFRLARYIPGSMDDGQNTGRKEAPGILSNLDARSGLQITDALKMQMEVQ 160




 Score = 37.3 bits (75), Expect(3) = 8e-022
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +3 / +2

                                               
Query: 237 AQGKYLQKIIEEQQRLTGVKSETPAGGASVTVSSDQ 344
           AQGKY QKI+EE QR+ GV  ++      +++ S +
Sbjct: 215 AQGKYFQKILEEHQRIGGVLKDSANSVECLSIMSGE 322




 Score = 32.7 bits (65), Expect(3) = 8e-022
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1 / +3

                             
Query: 166 CRWRSKSGCTNS*KYKGS 219
           C+WR + GC NS +Y+G+
Sbjct: 144 CKWRCRHGCMNSLRYRGN 197



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 324,638,544
Number of Sequences: 355925
Number of extensions: 4806489
Number of successful extensions: 55993
Number of sequences better than 1.0e-020: 6
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 7706846940
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)