TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4580138.2.1
(1484 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT636481.1|DT636481 EST1151412 Normalized pine embryo li... 308 6e-088
gb|DR691292.1|DR691292 EST1081379 Normalized pine embryo li... 225 1e-078
gb|DR693509.1|DR693509 EST1083597 Normalized pine embryo li... 294 1e-078
gb|DR069601.1|DR069601 RTDK1_8_F04.b1_A029 Roots, dark Pinu... 253 2e-066
gb|DR081028.1|DR081028 RTFEPL1_26_H01.g1_A029 Roots plus ad... 228 6e-059
gb|DR693364.1|DR693364 EST1083452 Normalized pine embryo li... 228 6e-059
gb|DR069609.1|DR069609 RTDK1_8_G04.b1_A029 Roots, dark Pinu... 208 7e-053
gb|DT638027.1|DT638027 EST1152958 Normalized pine embryo li... 172 4e-042
gb|DT638683.1|DT638683 EST1153614 Normalized pine embryo li... 168 7e-041
gb|DR694159.1|DR694159 EST1084249 Normalized pine embryo li... 144 2e-033
>gb|DT636481.1|DT636481 EST1151412 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGS33 3' end, mRNA sequence
Length = 830
Score = 308 bits (668), Expect(2) = 6e-088
Identities = 124/166 (74%), Positives = 142/166 (85%)
Frame = -1 / +1
Query: 1268 WSNMLNTLMQQASIYGVAAGYCLSASLLSIINKWAIMKFPYPGALTALQYFTSVAGVLLC 1089
W + Q ASIYG+AAGYC+SASLLSIINKWAIMKFPYPGALTALQY TSV VL+
Sbjct: 283 WYAKFQAVWQSASIYGIAAGYCISASLLSIINKWAIMKFPYPGALTALQYLTSVVAVLIL 462
Query: 1088 GQLKLIEHDGLNLRTMWKFLPAAVMFYISIFTNSELLLHADVDTFIVFRSAVPIFVAIGE 909
GQLKL+EHD + L TMW+FLPAA++FY+S+FTNSELLLHA+VDTFIVFRSAVPIFVAIGE
Sbjct: 463 GQLKLLEHDKVVLHTMWRFLPAALIFYLSLFTNSELLLHANVDTFIVFRSAVPIFVAIGE 642
Query: 908 TLYLHQPWPSLKTWLSLSTILGGSVIYVFTDNQFTVTAYTWAVAYL 771
+LYL QPWPS KTW SL+ I GG V+YV TD QFT+ AY+WA+AYL
Sbjct: 643 SLYLKQPWPSAKTWCSLAIIFGGGVLYVVTDYQFTIMAYSWALAYL 780
Score = 187 bits (402), Expect(2) = 9e-048
Identities = 84/142 (59%), Positives = 101/142 (71%)
Frame = +1 / -1
Query: 817 SVKT*ITLPPSIVESESHVLSDGHG**RYSVSPIATNIGTAERNTMKVSTSA*SRSSLFV 996
SV T* T PP I+ SE HVL++G G +Y +SP+ATNIGTAERNT+ VST A S +SLFV
Sbjct: 734 SVTT*STPPPKIIASEHHVLAEGQGCFKYKLSPMATNIGTAERNTINVSTFACSSNSLFV 555
Query: 997 KMEM*NITAAGKNFHIVLKXXXXXXXXXXXXHRRTPATLVKYCRAVRAPGYGNFMIAHLL 1176
+ * I AAG+N HIV + RT TLVKYC+AV+APGYGNFMIAHLL
Sbjct: 554 NRDR*KIKAAGRNLHIV*RTTLSCSSNFNWPRIRTATTLVKYCKAVKAPGYGNFMIAHLL 375
Query: 1177 MIESSDADKQYPAATP*IEACC 1242
MI++ +A+ QYPAA P*IEA C
Sbjct: 374 MIDNKEAEMQYPAAIP*IEALC 309
Score = 75.3 bits (158), Expect(2) = 1e-021
Identities = 34/87 (39%), Positives = 55/87 (63%)
Frame = +3 / -3
Query: 786 PGVSSHSELVVCENIDHTSTKYCGE*KPCLERWPWLMKIQRLSDRDKYRHSRAEHNESIH 965
P + +L++ +NI HT++K * P R P L+++Q ++ +KYR S +HN+ ++
Sbjct: 765 PTICHDGKLIISDNIKHTTSKNNS**APRFSRRPRLLQVQTFTNGNKYRDS*TKHNKCVN 586
Query: 966 IGMKQEFTICEDGDVEHHSSR*ELPHC 1046
I M+ + TICE VE+ SSR*+ PHC
Sbjct: 585 ICMQ*QLTICE*R*VEN*SSR*KSPHC 505
Score = 72.1 bits (151), Expect(2) = 2e-021
Identities = 32/90 (35%), Positives = 48/90 (53%)
Frame = -3 / +3
Query: 1044 NVEVLTCCCDVLHLHLHK**TPASCRCGYFHCVPLCCAYICRDRRDAVSSSAMAIAQDMA 865
NVE+ TCC + L + +HK** +C+C + +CV C YIC V +A+A ++
Sbjct: 507 NVEISTCCFNFLPISIHK**VATACKC*HIYCVSFSCPYICCHW*KFVLEAALAFC*NVV 686
Query: 864 FTLHNTWWKCDLCFHRQPIHCDCLHLGSGL 775
T + W C LC H I+ + LG G+
Sbjct: 687 LTSYYFWRWCALCCH*LSIYHHGI*LGLGI 776
Score = 51.5 bits (106), Expect(2) = 2e-021
Identities = 22/57 (38%), Positives = 28/57 (49%)
Frame = -3 / +3
Query: 1257 VEHSYAASLNLWCGCWVLFISVAALDHQQMGNHEISISWSPDSSAVFH*CCWSSPMW 1087
+ S A LW WVL ++HQQ+GNHE+SI S DS +F C W
Sbjct: 294 ISSSVAECFYLWNCSWVLHFCFFVINHQQVGNHEVSIPRSFDSFTIFDKCSGCPDSW 464
Score = 49.2 bits (101), Expect(2) = 1e-021
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = +3 / -3
Query: 1119 ILQSCQGSRIWKFHDCPFVDDREQRR**TIPSSHTID 1229
IL SCQ S +WK HDCP VDD QR +PS ++I+
Sbjct: 432 IL*SCQSSWVWKLHDCPLVDD**QRSRNAVPSCNSIN 322
Score = 37.3 bits (75), Expect(2) = 6e-088
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -1 / +2
Query: 767 SMSIDFVYIKHVVMT 723
SMSIDFVYIKHVVMT
Sbjct: 785 SMSIDFVYIKHVVMT 829
Score = 24.9 bits (48), Expect(2) = 9e-048
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1 / -3
Query: 724 VITTCLMYTKSMDMLAR 774
V+TTC + TKS+D+L +
Sbjct: 828 VMTTCFI*TKSIDILTQ 778
>gb|DR691292.1|DR691292 EST1081379 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD656 3' end, mRNA sequence
Length = 702
Score = 225 bits (485), Expect(2) = 1e-078
Identities = 92/119 (77%), Positives = 104/119 (87%)
Frame = -1 / +3
Query: 1268 WSNMLNTLMQQASIYGVAAGYCLSASLLSIINKWAIMKFPYPGALTALQYFTSVAGVLLC 1089
W + Q ASIYG+AAGYC+SASLLSIINKWAIMKFPYPGALTALQY TSV VL+
Sbjct: 183 WYAKFQAVWQSASIYGIAAGYCISASLLSIINKWAIMKFPYPGALTALQYLTSVVAVLIL 362
Query: 1088 GQLKLIEHDGLNLRTMWKFLPAAVMFYISIFTNSELLLHADVDTFIVFRSAVPIFVAIG 912
GQLKL+EHD + L TMW+FLPAA++FY+S+FTNSELLLHA+VDTFIVFRSAVPIFVAIG
Sbjct: 363 GQLKLLEHDKVVLHTMWRFLPAALIFYLSLFTNSELLLHANVDTFIVFRSAVPIFVAIG 539
Score = 151 bits (324), Expect(2) = 4e-042
Identities = 67/110 (60%), Positives = 79/110 (71%)
Frame = +1 / -3
Query: 913 PIATNIGTAERNTMKVSTSA*SRSSLFVKMEM*NITAAGKNFHIVLKXXXXXXXXXXXXH 1092
P+ATNIGTAERNT+ VST A S +SLFV + * I AAG+N HIV +
Sbjct: 538 PMATNIGTAERNTINVSTFACSSNSLFVNRDR*KIKAAGRNLHIV*RTTLSCSSNFNWPR 359
Query: 1093 RRTPATLVKYCRAVRAPGYGNFMIAHLLMIESSDADKQYPAATP*IEACC 1242
RT TLVKYC+AV+APGYGNFMIAHLLMI++ +A+ QYPAA P*IEA C
Sbjct: 358 IRTATTLVKYCKAVKAPGYGNFMIAHLLMIDNKEAEMQYPAAIP*IEALC 209
Score = 90.4 bits (191), Expect(2) = 1e-078
Identities = 33/49 (67%), Positives = 40/49 (81%)
Frame = -1 / +1
Query: 917 IGETLYLHQPWPSLKTWLSLSTILGGSVIYVFTDNQFTVTAYTWAVAYL 771
+GE+LYL QPWPS KTW SL+ I GG V+YV TD QFT+ AY+WA+AYL
Sbjct: 535 LGESLYLKQPWPSAKTWCSLAIIFGGGVLYVVTDYQFTIMAYSWALAYL 681
Score = 41.8 bits (85), Expect(2) = 4e-042
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +1 / -2
Query: 817 SVKT*ITLPPSIVESESHVLSDGHG**RYSVSP 915
SV T* T PP I+ SE HVL++G G +Y +SP
Sbjct: 635 SVTT*STPPPKIIASEHHVLAEGQGCFKYKLSP 537
>gb|DR693509.1|DR693509 EST1083597 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAE014 3' end, mRNA sequence
Length = 785
Score = 294 bits (636), Expect = 1e-078
Identities = 119/159 (74%), Positives = 135/159 (84%)
Frame = -1 / +3
Query: 1268 WSNMLNTLMQQASIYGVAAGYCLSASLLSIINKWAIMKFPYPGALTALQYFTSVAGVLLC 1089
W + Q ASIYG+AAGYC+SASLLSIINKWAIMKFPYPGALTALQY TSV VL+
Sbjct: 309 WYAKFQAVWQSASIYGIAAGYCISASLLSIINKWAIMKFPYPGALTALQYLTSVVAVLIL 488
Query: 1088 GQLKLIEHDGLNLRTMWKFLPAAVMFYISIFTNSELLLHADVDTFIVFRSAVPIFVAIGE 909
GQLKL+EHD + L TMW+FLPAA++FY+S+FTNSELLLHA+VDTFIVFRSAVPIFVAIGE
Sbjct: 489 GQLKLLEHDKVVLHTMWRFLPAALIFYLSLFTNSELLLHANVDTFIVFRSAVPIFVAIGE 668
Query: 908 TLYLHQPWPSLKTWLSLSTILGGSVIYVFTDNQFTVTAY 792
+LYL QPWPS KTW SL+ I GG V+YV TD QFT+ AY
Sbjct: 669 SLYLKQPWPSAKTWCSLAIIFGGGVLYVVTDYQFTIMAY 785
Score = 187 bits (402), Expect = 2e-046
Identities = 84/142 (59%), Positives = 101/142 (71%)
Frame = +1 / -2
Query: 817 SVKT*ITLPPSIVESESHVLSDGHG**RYSVSPIATNIGTAERNTMKVSTSA*SRSSLFV 996
SV T* T PP I+ SE HVL++G G +Y +SP+ATNIGTAERNT+ VST A S +SLFV
Sbjct: 760 SVTT*STPPPKIIASEHHVLAEGQGCFKYKLSPMATNIGTAERNTINVSTFACSSNSLFV 581
Query: 997 KMEM*NITAAGKNFHIVLKXXXXXXXXXXXXHRRTPATLVKYCRAVRAPGYGNFMIAHLL 1176
+ * I AAG+N HIV + RT TLVKYC+AV+APGYGNFMIAHLL
Sbjct: 580 NRDR*KIKAAGRNLHIV*RTTLSCSSNFNWPRIRTATTLVKYCKAVKAPGYGNFMIAHLL 401
Query: 1177 MIESSDADKQYPAATP*IEACC 1242
MI++ +A+ QYPAA P*IEA C
Sbjct: 400 MIDNKEAEMQYPAAIP*IEALC 335
Score = 73.0 bits (153), Expect(2) = 5e-021
Identities = 33/80 (41%), Positives = 53/80 (66%)
Frame = +3 / -1
Query: 807 ELVVCENIDHTSTKYCGE*KPCLERWPWLMKIQRLSDRDKYRHSRAEHNESIHIGMKQEF 986
+L++ +NI HT++K * P R P L+++Q ++ +KYR S +HN+ ++I M+ +
Sbjct: 770 KLIISDNIKHTTSKNNS**APRFSRRPRLLQVQTFTNGNKYRDS*TKHNKCVNICMQ*QL 591
Query: 987 TICEDGDVEHHSSR*ELPHC 1046
TICE VE+ SSR*+ PHC
Sbjct: 590 TICE*R*VEN*SSR*KSPHC 531
Score = 49.2 bits (101), Expect(2) = 5e-021
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = +3 / -1
Query: 1119 ILQSCQGSRIWKFHDCPFVDDREQRR**TIPSSHTID 1229
IL SCQ S +WK HDCP VDD QR +PS ++I+
Sbjct: 458 IL*SCQSSWVWKLHDCPLVDD**QRSRNAVPSCNSIN 348
>gb|DR069601.1|DR069601 RTDK1_8_F04.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_8_F04_A029 3', mRNA sequence
Length = 964
Score = 253 bits (548), Expect = 2e-066
Identities = 104/179 (58%), Positives = 134/179 (74%)
Frame = -1 / -1
Query: 1220 VAAGYCLSASLLSIINKWAIMKFPYPGALTALQYFTSVAGVLLCGQLKLIEHDGLNLRTM 1041
V GY L +S+L++INK+AI KF YPG +TALQY TSV GV + G+L L+ HD T
Sbjct: 556 VVLGYALCSSMLAVINKYAITKFNYPGLMTALQYLTSVMGVWVFGKLGLLHHDPFVWETA 377
Query: 1040 WKFLPAAVMFYISIFTNSELLLHADVDTFIVFRSAVPIFVAIGETLYLHQPWPSLKTWLS 861
KF+PAA +FY++IFTN+ LL HA+VDTFIVFRS P+ VA+ +T + QPWPS T++S
Sbjct: 376 KKFMPAAFVFYLAIFTNTNLLKHANVDTFIVFRSLTPLLVAMADTAFRKQPWPSKYTFMS 197
Query: 860 LSTILGGSVIYVFTDNQFTVTAYTWAVAYLASMSIDFVYIKHVVMTIGLNTWGLVLYNN 684
L ILGG+V YV TD+ FT+TAY+WA AYL ++ + VYIKH+V +GLNTWG VLYNN
Sbjct: 196 LVVILGGAVGYVATDSGFTLTAYSWAFAYLITIVTEMVYIKHMVTNLGLNTWGFVLYNN 20
Score = 55.1 bits (114), Expect(3) = 7e-024
Identities = 32/74 (43%), Positives = 40/74 (54%)
Frame = +1 / +3
Query: 817 SVKT*ITLPPSIVESESHVLSDGHG**RYSVSPIATNIGTAERNTMKVSTSA*SRSSLFV 996
SV T T PP+I V +GHG +VS +AT+ G + NTM VST A R +FV
Sbjct: 153 SVATYPTAPPNITTRLIKVYLEGHGCFLNAVSAMATSNGVRDLNTMNVSTLACLRRFVFV 332
Query: 997 KMEM*NITAAGKNF 1038
+ * AAG NF
Sbjct: 333 NIAK*KTNAAGMNF 374
Score = 50.6 bits (104), Expect(3) = 7e-024
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +1 / +3
Query: 667 SIKASRLLYSTRPHVFSPMVITTCLMYTKSMDMLAR 774
SI+ S+LLYST PHVF P +T CLM T S+ M+ R
Sbjct: 3 SIRDSKLLYSTNPHVFRPRFVTMCLM*TISVTMVIR 110
Score = 43.7 bits (89), Expect(3) = 7e-024
Identities = 22/56 (39%), Positives = 30/56 (53%)
Frame = +1 / +3
Query: 1096 RTPATLVKYCRAVRAPGYGNFMIAHLLMIESSDADKQYPAATP*IEACCIRVFNML 1263
+TP TLVKYCRAV PG N +IA+L + S + P T + C ++L
Sbjct: 432 QTPITLVKYCRAVIKPG*LNLVIAYLFITASILEQRA*PRTTVAVA*YCFEASDLL 599
>gb|DR081028.1|DR081028 RTFEPL1_26_H01.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_26_H01_A029 5', mRNA sequence
Length = 729
Score = 228 bits (493), Expect = 6e-059
Identities = 95/169 (56%), Positives = 125/169 (73%)
Frame = -1 / +3
Query: 1220 VAAGYCLSASLLSIINKWAIMKFPYPGALTALQYFTSVAGVLLCGQLKLIEHDGLNLRTM 1041
V GY L +S+L++INK+AI KF YPG +TALQY TSV GV + G+L L+ HD T
Sbjct: 222 VVLGYALCSSMLAVINKYAITKFNYPGLMTALQYLTSVMGVWVFGKLGLLHHDPFVWETA 401
Query: 1040 WKFLPAAVMFYISIFTNSELLLHADVDTFIVFRSAVPIFVAIGETLYLHQPWPSLKTWLS 861
KF+PAA +FY++IFTN+ LL HA+VDTFIVFRS P+ VA+ +T + QPWPS T++S
Sbjct: 402 KKFMPAAFVFYLAIFTNTNLLKHANVDTFIVFRSLTPLLVAMADTAFRKQPWPSKYTFMS 581
Query: 860 LSTILGGSVIYVFTDNQFTVTAYTWAVAYLASMSIDFVYIKHVVMTIGL 714
L ILGG+V YV TD+ FT+TAY+WA AYL ++ + VYIKH+V +GL
Sbjct: 582 LVVILGGAVGYVATDSGFTLTAYSWAFAYLITIVTEMVYIKHMVTNLGL 728
>gb|DR693364.1|DR693364 EST1083452 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADY20 3' end, mRNA sequence
Length = 759
Score = 228 bits (493), Expect = 6e-059
Identities = 95/169 (56%), Positives = 125/169 (73%)
Frame = -1 / +1
Query: 1220 VAAGYCLSASLLSIINKWAIMKFPYPGALTALQYFTSVAGVLLCGQLKLIEHDGLNLRTM 1041
V GY L +S+L++INK+AI KF YPG +TALQY TSV GV + G+L L+ HD T
Sbjct: 250 VVLGYALCSSMLAVINKYAITKFNYPGLMTALQYLTSVMGVWVFGKLGLLHHDPFVWETA 429
Query: 1040 WKFLPAAVMFYISIFTNSELLLHADVDTFIVFRSAVPIFVAIGETLYLHQPWPSLKTWLS 861
KF+PAA +FY++IFTN+ LL HA+VDTFIVFRS P+ VA+ +T + QPWPS T++S
Sbjct: 430 KKFMPAAFVFYLAIFTNTNLLKHANVDTFIVFRSLTPLLVAMADTAFRKQPWPSKYTFMS 609
Query: 860 LSTILGGSVIYVFTDNQFTVTAYTWAVAYLASMSIDFVYIKHVVMTIGL 714
L ILGG+V YV TD+ FT+TAY+WA AYL ++ + VYIKH+V +GL
Sbjct: 610 LVVILGGAVGYVATDSGFTLTAYSWAFAYLITIVTEMVYIKHMVTNLGL 756
>gb|DR069609.1|DR069609 RTDK1_8_G04.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_8_G04_A029 3', mRNA sequence
Length = 865
Score = 208 bits (449), Expect = 7e-053
Identities = 87/150 (58%), Positives = 112/150 (74%)
Frame = -1 / -1
Query: 1220 VAAGYCLSASLLSIINKWAIMKFPYPGALTALQYFTSVAGVLLCGQLKLIEHDGLNLRTM 1041
V GY L +S+L++INK+AI KF YPG +TALQY TSV GV + G+L L+ HD T
Sbjct: 457 VVLGYALCSSMLAVINKYAITKFNYPGLMTALQYLTSVMGVWVFGKLGLLHHDPFVWETA 278
Query: 1040 WKFLPAAVMFYISIFTNSELLLHADVDTFIVFRSAVPIFVAIGETLYLHQPWPSLKTWLS 861
KF+PAA +FY++IFTN+ LL HA+VDTFIVFRS P+ VA+ +T + QPWPS T++S
Sbjct: 277 KKFMPAAFVFYLAIFTNTNLLKHANVDTFIVFRSLTPLLVAMADTAFRKQPWPSKYTFMS 98
Query: 860 LSTILGGSVIYVFTDNQFTVTAYTWAVAYL 771
L ILGG+V YV TD+ FT+TAY+WA AYL
Sbjct: 97 LVVILGGAVGYVATDSGFTLTAYSWAFAYL 8
>gb|DT638027.1|DT638027 EST1152958 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHA31 3' end, mRNA sequence
Length = 663
Score = 172 bits (371), Expect = 4e-042
Identities = 72/127 (56%), Positives = 93/127 (73%)
Frame = -1 / +3
Query: 1220 VAAGYCLSASLLSIINKWAIMKFPYPGALTALQYFTSVAGVLLCGQLKLIEHDGLNLRTM 1041
V GY L +S+L++INK+AI KF YPG +TALQY TSV GV + G+L L+ HD T
Sbjct: 258 VVLGYALCSSMLAVINKYAITKFNYPGLMTALQYLTSVMGVWVFGKLGLLHHDPFVWETA 437
Query: 1040 WKFLPAAVMFYISIFTNSELLLHADVDTFIVFRSAVPIFVAIGETLYLHQPWPSLKTWLS 861
KF+PAA +FY++IFTN+ LL HA+VDTFIVFRS P+ VA+ +T + QPWPS T++S
Sbjct: 438 KKFMPAAFVFYLAIFTNTNLLKHANVDTFIVFRSLTPLLVAMADTAFRKQPWPSKYTFMS 617
Query: 860 LSTILGG 840
L ILGG
Sbjct: 618 LVVILGG 638
>gb|DT638683.1|DT638683 EST1153614 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHI13 3' end, mRNA sequence
Length = 834
Score = 168 bits (362), Expect = 7e-041
Identities = 70/126 (55%), Positives = 91/126 (72%)
Frame = -1 / +2
Query: 1220 VAAGYCLSASLLSIINKWAIMKFPYPGALTALQYFTSVAGVLLCGQLKLIEHDGLNLRTM 1041
V GY L +S+L++INK+AI KF YPG +TALQY TSV GV + G+L L+ HD T
Sbjct: 455 VVLGYALCSSMLAVINKYAITKFNYPGLMTALQYLTSVMGVWVFGKLGLLHHDPFVWETA 634
Query: 1040 WKFLPAAVMFYISIFTNSELLLHADVDTFIVFRSAVPIFVAIGETLYLHQPWPSLKTWLS 861
KF+PAA +FY++IFTN+ LL HA+VDTFIVFRS P+ VA+ +T + QPWPS T++S
Sbjct: 635 KKFMPAAFVFYLAIFTNTNLLKHANVDTFIVFRSLTPLLVAMADTAFTKQPWPSKYTFMS 814
Query: 860 LSTILG 843
L I G
Sbjct: 815 LVVIFG 832
>gb|DR694159.1|DR694159 EST1084249 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAE879 3' end, mRNA sequence
Length = 765
Score = 144 bits (308), Expect = 2e-033
Identities = 60/105 (57%), Positives = 78/105 (74%)
Frame = -1 / +3
Query: 1220 VAAGYCLSASLLSIINKWAIMKFPYPGALTALQYFTSVAGVLLCGQLKLIEHDGLNLRTM 1041
V GY L +S+L++INK+AI KF YPG +TALQY TSV GV + G+L L+ HD T
Sbjct: 447 VVLGYALCSSMLAVINKYAITKFNYPGLMTALQYLTSVMGVWVFGKLGLLHHDPFVWETA 626
Query: 1040 WKFLPAAVMFYISIFTNSELLLHADVDTFIVFRSAVPIFVAIGET 906
KF+PAA +FY++IFTN+ LL HA+VDTFIVFRS P+ VA+ +T
Sbjct: 627 KKFMPAAFVFYLAIFTNTNLLKHANVDTFIVFRSLTPLLVAMADT 761
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 844,893,311
Number of Sequences: 355925
Number of extensions: 13116117
Number of successful extensions: 59339
Number of sequences better than 1.0e-020: 10
length of database: 72,425,745
effective HSP length: 54
effective length of database: 53,205,795
effective search space used: 23410549800
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)