TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4573985.2.1
(373 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX252161.1|BX252161 BX252161 Pinus pinaster differenciat... 191 3e-048
gb|AW869945.1|AW869945 NXNV_120_C02_F Nsf Xylem Normal wood... 191 4e-048
gb|BQ634008.1|BQ634008 NXRV063_F08_F NXRV (Nsf Xylem Root w... 191 4e-048
gb|CF397586.1|CF397586 RTDS3_4_C05.g1_A022 Drought-stressed... 191 4e-048
gb|CF476464.1|CF476464 RTWW3_1_F05.g1_A022 Well-watered lob... 186 1e-046
gb|BQ700778.1|BQ700778 NXRV111_B12_F NXRV (Nsf Xylem Root w... 175 3e-043
gb|AW587752.1|AW587752 ST66D02 Pine TriplEx shoot tip libra... 174 4e-043
gb|CF475561.1|CF475561 RTWW2_12_B09.g1_A021 Well-watered lo... 160 5e-039
gb|BE996819.1|BE996819 NXCI_101_F08_F NXCI (Nsf Xylem Compr... 156 8e-038
gb|DR177217.1|DR177217 RTMNUT1_3_H05.g1_A029 Roots minus mi... 149 2e-035
gb|CV032886.1|CV032886 RTNACL1_18_H11.g1_A029 Roots plus ad... 87 4e-035
gb|AW758804.1|AW758804 NXNV_090_C06_F Nsf Xylem Normal wood... 117 4e-026
gb|CD022750.1|CD022750 NXPV_079_H01_F NXPV (Nsf Xylem Plani... 102 1e-021
>gb|BX252161.1|BX252161 BX252161 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP060F09 similar to ENDOGLUCANASE PRECURSOR,
mRNA sequence
Length = 709
Score = 191 bits (412), Expect = 3e-048
Identities = 75/111 (67%), Positives = 84/111 (75%)
Frame = -3 / +3
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGSSQPNDHYCWMR 177
+YE+ GEL+H K++IKWG DY LKTFNSSADTI I AQVGVGDTS G+S PNDHYCWMR
Sbjct: 51 KYESAGELNHAKDIIKWGADYFLKTFNSSADTISLIHAQVGVGDTSGGASSPNDHYCWMR 230
Query: 176 PEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
PED+DY RPV +CHSCSD SIVFKD+K YS KLVKGA L
Sbjct: 231 PEDVDYPRPVYDCHSCSDLAAETAAALAAASIVFKDNKLYSQKLVKGATTL 383
>gb|AW869945.1|AW869945 NXNV_120_C02_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_120_C02 5' similar to Arabidopsis thaliana
sequence At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 557
Score = 191 bits (411), Expect = 4e-048
Identities = 75/111 (67%), Positives = 84/111 (75%)
Frame = -3 / +3
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGSSQPNDHYCWMR 177
+YE+ GEL+H K++IKWG DY LKTFNSSADTI I AQVGVGDTS G+S PNDHYCWMR
Sbjct: 105 KYESAGELNHAKDIIKWGADYFLKTFNSSADTITLIHAQVGVGDTSGGASSPNDHYCWMR 284
Query: 176 PEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
PED+DY RPV +CHSCSD SIVFKD+K YS KLVKGA L
Sbjct: 285 PEDVDYPRPVYDCHSCSDLAAETAAALAAASIVFKDNKLYSQKLVKGATTL 437
>gb|BQ634008.1|BQ634008 NXRV063_F08_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV063_F08 5' similar to Arabidopsis thaliana
sequence At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 483
Score = 191 bits (411), Expect = 4e-048
Identities = 75/111 (67%), Positives = 84/111 (75%)
Frame = -3 / +1
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGSSQPNDHYCWMR 177
+YE+ GEL+H K++IKWG DY LKTFNSSADTI I AQVGVGDTS G+S PNDHYCWMR
Sbjct: 112 KYESAGELNHAKDIIKWGADYFLKTFNSSADTITLIHAQVGVGDTSGGASSPNDHYCWMR 291
Query: 176 PEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
PED+DY RPV +CHSCSD SIVFKD+K YS KLVKGA L
Sbjct: 292 PEDVDYPRPVYDCHSCSDLAAETAAALAAASIVFKDNKLYSQKLVKGATTL 444
>gb|CF397586.1|CF397586 RTDS3_4_C05.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_4_C05_A022 5', mRNA sequence
Length = 729
Score = 191 bits (411), Expect = 4e-048
Identities = 75/111 (67%), Positives = 84/111 (75%)
Frame = -3 / +1
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGSSQPNDHYCWMR 177
+YE+ GEL+H K++IKWG DY LKTFNSSADTI I AQVGVGDTS G+S PNDHYCWMR
Sbjct: 25 KYESAGELNHAKDIIKWGADYFLKTFNSSADTITLIHAQVGVGDTSGGASSPNDHYCWMR 204
Query: 176 PEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
PED+DY RPV +CHSCSD SIVFKD+K YS KLVKGA L
Sbjct: 205 PEDVDYPRPVYDCHSCSDLAAETAAALAAASIVFKDNKLYSQKLVKGATTL 357
>gb|CF476464.1|CF476464 RTWW3_1_F05.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_1_F05_A022 5', mRNA sequence
Length = 519
Score = 186 bits (400), Expect = 1e-046
Identities = 72/107 (67%), Positives = 82/107 (76%)
Frame = -3 / +3
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGSSQPNDHYCWMR 177
+YE+ GEL+H K++IKWG DY LKTFNSSADTI I AQVGVGDTS G+S PNDHYCWMR
Sbjct: 198 KYESAGELNHAKDIIKWGADYFLKTFNSSADTITLIHAQVGVGDTSGGASSPNDHYCWMR 377
Query: 176 PEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKG 36
PED+DY RPV +CHSCSD SIVFKD++ YS KLVKG
Sbjct: 378 PEDVDYPRPVYDCHSCSDLAAETAAALAAASIVFKDNELYSQKLVKG 518
>gb|BQ700778.1|BQ700778 NXRV111_B12_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV111_B12 5' similar to Arabidopsis thaliana
sequence At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 438
Score = 175 bits (376), Expect = 3e-043
Identities = 70/111 (63%), Positives = 79/111 (71%)
Frame = -3 / +1
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGSSQPNDHYCWMR 177
+YE+ GEL+H K++IKWG DY LKTFNSSADTI I AQVGVGDTS G+S PNDHYCWMR
Sbjct: 103 KYESAGELNHAKDIIKWGADYFLKTFNSSADTITLIHAQVGVGDTSXGASSPNDHYCWMR 282
Query: 176 PEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
PED+DY RPV +CHSCSD SIV +K S LVKGA L
Sbjct: 283 PEDVDYPRPVYDCHSCSDLAAETAAALAAASIVSXXNKLXSXXLVKGATXL 435
>gb|AW587752.1|AW587752 ST66D02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST66D02, mRNA sequence
Length = 388
Score = 174 bits (375), Expect = 4e-043
Identities = 73/111 (65%), Positives = 82/111 (73%)
Frame = -3 / +2
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGSSQPNDHYCWMR 177
+YE+ GEL+H K++IKWG DY LKTFNSSADTI I AQVGVGDTS G+S PNDHYC
Sbjct: 23 KYESAGELNHAKDIIKWGADYFLKTFNSSADTITLIHAQVGVGDTSGGASSPNDHYCXXX 202
Query: 176 PEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYSDKLVKGAKAL 24
ED+DY RPV +CHSCSD SIVFKD+K YS KLVKGA L
Sbjct: 203 XEDVDYPRPVYDCHSCSDLXAETXAALAAASIVFKDNKLYSQKLVKGATTL 355
>gb|CF475561.1|CF475561 RTWW2_12_B09.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_12_B09_A021 5', mRNA sequence
Length = 766
Score = 160 bits (345), Expect = 5e-039
Identities = 61/93 (65%), Positives = 70/93 (75%)
Frame = -3 / +3
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGSSQPNDHYCWMR 177
+YE+ GEL+H K++IKWG DY LKTFNSSADTI I AQVG+GDTS G+S PNDHYCWMR
Sbjct: 486 KYESAGELNHAKDIIKWGADYFLKTFNSSADTISLIHAQVGLGDTSGGASSPNDHYCWMR 665
Query: 176 PEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIV 78
PED+DY RPV +CHSCSD SIV
Sbjct: 666 PEDVDYPRPVYDCHSCSDLAAETAAALAAASIV 764
>gb|BE996819.1|BE996819 NXCI_101_F08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_101_F08 5' similar to Arabidopsis
thaliana sequence At5g49720 cellulase homolog OR16pep
precursor (pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 387
Score = 156 bits (336), Expect = 8e-038
Identities = 58/78 (74%), Positives = 66/78 (84%)
Frame = -3 / +2
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGSSQPNDHYCWMR 177
+YE+ GEL+H K++IKWG DY LKTFNSSADTI I AQVGVGDTS G+S PNDHYCWM
Sbjct: 131 KYESAGELNHAKDIIKWGADYFLKTFNSSADTITLIHAQVGVGDTSXGASXPNDHYCWMX 310
Query: 176 PEDIDYKRPVTECHSCSD 123
PED+DY RPV +CHSCSD
Sbjct: 311 PEDVDYPRPVYDCHSCSD 364
>gb|DR177217.1|DR177217 RTMNUT1_3_H05.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_3_H05_A029 5', mRNA sequence
Length = 710
Score = 149 bits (319), Expect = 2e-035
Identities = 55/74 (74%), Positives = 63/74 (85%)
Frame = -3 / +2
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGSSQPNDHYCWMR 177
+YE+ GEL+H K++IKWG DY LKTFNSSADTI I AQVGVGDTS G+S PNDHYCWMR
Sbjct: 488 KYESAGELNHAKDIIKWGADYFLKTFNSSADTITLIHAQVGVGDTSGGASSPNDHYCWMR 667
Query: 176 PEDIDYKRPVTECH 135
PED+DY RPV +CH
Sbjct: 668 PEDVDYPRPVYDCH 709
>gb|CV032886.1|CV032886 RTNACL1_18_H11.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_18_H11_A029 5', mRNA sequence
Length = 775
Score = 86.8 bits (183), Expect(2) = 4e-035
Identities = 37/70 (52%), Positives = 40/70 (57%)
Frame = -3 / +2
Query: 233 VGDTSKGSSQPNDHYCWMRPEDIDYKRPVTECHSCSDXXXXXXXXXXXXSIVFKDSKTYS 54
VG SK S+ P+D YCW RPED+DY RPVT C SD SIVFKD YS
Sbjct: 338 VGTGSKTSTTPDDQYCWTRPEDMDYSRPVTHCSVGSDLAAEMAAALAAASIVFKDDTNYS 517
Query: 53 DKLVKGAKAL 24
LVKGA L
Sbjct: 518 KVLVKGATTL 547
Score = 81.3 bits (171), Expect(2) = 4e-035
Identities = 32/43 (74%), Positives = 37/43 (86%)
Frame = -3 / +2
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVG 228
+YEAIGEL+H+KE+I+WGTDYILKTFNSSA ID I QVG G
Sbjct: 221 KYEAIGELNHVKEIIRWGTDYILKTFNSSATKIDVIHCQVGTG 349
>gb|AW758804.1|AW758804 NXNV_090_C06_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_090_C06 5' similar to Arabidopsis thaliana
sequence At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 203
Score = 117 bits (251), Expect = 4e-026
Identities = 46/66 (69%), Positives = 54/66 (81%)
Frame = -3 / +3
Query: 356 RYEAIGELDHIKELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGSSQPNDHYCWMR 177
+YE+ GEL+H K++IKWG DY LKTFNSSADTI I AQVGVGDTS G+S PNDHY MR
Sbjct: 3 KYESAGELNHAKDIIKWGADYFLKTFNSSADTITLIHAQVGVGDTSGGASSPNDHYXXMR 182
Query: 176 PEDIDY 159
PE++ Y
Sbjct: 183 PENVXY 200
>gb|CD022750.1|CD022750 NXPV_079_H01_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_079_H01 5' similar to Arabidopsis
thaliana sequence At5g49720 cellulase homolog OR16pep
precursor (pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 164
Score = 102 bits (218), Expect = 1e-021
Identities = 40/54 (74%), Positives = 44/54 (81%)
Frame = -3 / +2
Query: 323 KELIKWGTDYILKTFNSSADTIDRIVAQVGVGDTSKGSSQPNDHYCWMRPEDID 162
K++IKWG DY LKTFNSSADTI I AQVGVGDTS G+S NDHYCWM ED+D
Sbjct: 2 KDIIKWGADYFLKTFNSSADTITLIHAQVGVGDTSGGASXXNDHYCWMXXEDVD 163
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 184,695,676
Number of Sequences: 355925
Number of extensions: 2403168
Number of successful extensions: 69690
Number of sequences better than 1.0e-020: 21
length of database: 72,425,745
effective HSP length: 50
effective length of database: 54,629,495
effective search space used: 3987953135
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)