TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4573929.2.1
(691 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV034162.1|CV034162 RTNACL1_39_C12.b1_A029 Roots plus ad... 144 8e-034
gb|DR081623.1|DR081623 RTFEPL1_31_B03.b1_A029 Roots plus ad... 144 8e-034
gb|BX255434.1|BX255434 BX255434 Pinus pinaster differenciat... 136 1e-031
gb|CF399227.1|CF399227 RTDS3_27_G09.b1_A022 Drought-stresse... 136 1e-031
gb|CX648482.1|CX648482 COLD1_29_A03.b1_A029 Root cold Pinus... 136 1e-031
gb|DR094115.1|DR094115 STRR1_12_C04.g1_A033 Stem Response R... 136 1e-031
gb|DR177347.1|DR177347 RTMNUT1_4_F09.g1_A029 Roots minus mi... 136 1e-031
gb|DR178249.1|DR178249 RTMNUT1_10_G12.b1_A029 Roots minus m... 136 1e-031
gb|CF669944.1|CF669944 RTCNT1_47_C05.b1_A029 Root control P... 135 3e-031
gb|CF669954.1|CF669954 RTCNT1_47_D05.b1_A029 Root control P... 134 5e-031
gb|DR744847.1|DR744847 RTCU1_25_G06.b1_A029 Roots plus adde... 134 5e-031
gb|CX649716.1|CX649716 COLD1_41_C01.b1_A029 Root cold Pinus... 79 9e-029
gb|CX649795.1|CX649795 COLD1_41_C01.g1_A029 Root cold Pinus... 79 9e-029
gb|BX678886.1|BX678886 BX678886 RS Pinus pinaster cDNA clon... 123 1e-027
gb|BG275620.1|BG275620 NXSI_144_A03_F NXSI (Nsf Xylem Side ... 116 2e-025
>gb|CV034162.1|CV034162 RTNACL1_39_C12.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_39_C12_A029 3', mRNA sequence
Length = 720
Score = 144 bits (308), Expect = 8e-034
Identities = 57/83 (68%), Positives = 61/83 (73%)
Frame = +1 / +2
Query: 94 IGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVFAGRRPGDAEIVYXXXXXXXXXXXXX 273
+GCEVYNLGTG+GTSVLEMVAAFEKASGKKIPL A RRPGD E VY
Sbjct: 134 LGCEVYNLGTGQGTSVLEMVAAFEKASGKKIPLRIADRRPGDVETVYASTEKAERELNWK 313
Query: 274 XXYGIEEMCRDLWNWASKNPYGY 342
YG+EEMCRD WNW SKNP+GY
Sbjct: 314 AKYGVEEMCRDQWNWTSKNPWGY 382
Score = 116 bits (247), Expect = 2e-025
Identities = 52/83 (62%), Positives = 56/83 (67%)
Frame = -3 / -1
Query: 344 AYPYGFLLAQFHRSLHISSIPYXXXXXXXXXXXXXXX*TISASPGLRPANTRGIFFPEAF 165
+YP GFLL QFH S HISS PY *T+S SPGLR A +GIFFPEAF
Sbjct: 384 SYPQGFLLVQFHWSRHISSTPYLAFQFNSRSAFSVDA*TVSTSPGLRSAILKGIFFPEAF 205
Query: 164 SNAATISNTDVPFPVPKLYTSQP 96
SNAATIS TDVP PVP+L TSQP
Sbjct: 204 SNAATISRTDVPCPVPRL*TSQP 136
>gb|DR081623.1|DR081623 RTFEPL1_31_B03.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_31_B03_A029 3', mRNA sequence
Length = 689
Score = 144 bits (308), Expect = 8e-034
Identities = 57/83 (68%), Positives = 61/83 (73%)
Frame = +1 / +3
Query: 94 IGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVFAGRRPGDAEIVYXXXXXXXXXXXXX 273
+GCEVYNLGTG+GTSVLEMVAAFEKASGKKIPL A RRPGD E VY
Sbjct: 33 LGCEVYNLGTGQGTSVLEMVAAFEKASGKKIPLRIADRRPGDVETVYASTEKAERELNWK 212
Query: 274 XXYGIEEMCRDLWNWASKNPYGY 342
YG+EEMCRD WNW SKNP+GY
Sbjct: 213 AKYGVEEMCRDQWNWTSKNPWGY 281
Score = 116 bits (247), Expect = 2e-025
Identities = 52/83 (62%), Positives = 56/83 (67%)
Frame = -3 / -2
Query: 344 AYPYGFLLAQFHRSLHISSIPYXXXXXXXXXXXXXXX*TISASPGLRPANTRGIFFPEAF 165
+YP GFLL QFH S HISS PY *T+S SPGLR A +GIFFPEAF
Sbjct: 283 SYPQGFLLVQFHWSRHISSTPYLAFQFNSRSAFSVDA*TVSTSPGLRSAILKGIFFPEAF 104
Query: 164 SNAATISNTDVPFPVPKLYTSQP 96
SNAATIS TDVP PVP+L TSQP
Sbjct: 103 SNAATISRTDVPCPVPRL*TSQP 35
>gb|BX255434.1|BX255434 BX255434 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP005G04, mRNA sequence
Length = 668
Score = 136 bits (292), Expect = 1e-031
Identities = 55/83 (66%), Positives = 58/83 (69%)
Frame = +1 / +2
Query: 94 IGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVFAGRRPGDAEIVYXXXXXXXXXXXXX 273
IGC YNLGTG+GTSVLEMVAAFEKASGK IPL F RRPGDA VY
Sbjct: 266 IGCTAYNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPGDATAVYASTEKAERELDWK 445
Query: 274 XXYGIEEMCRDLWNWASKNPYGY 342
YGIEEMCRD WNWA +NP+GY
Sbjct: 446 AKYGIEEMCRDQWNWARQNPWGY 514
Score = 101 bits (215), Expect = 6e-021
Identities = 47/82 (57%), Positives = 52/82 (63%)
Frame = -3 / -3
Query: 338 PYGFLLAQFHRSLHISSIPYXXXXXXXXXXXXXXX*TISASPGLRPANTRGIFFPEAFSN 159
P+GF LAQFH SLHISSIPY *T ASPG N RG+ FP+AFSN
Sbjct: 510 PHGFCLAQFH*SLHISSIPYLAFQSNSRSAFSVEA*TAVASPGRLGQNLRGMLFPDAFSN 331
Query: 158 AATISNTDVPFPVPKLYTSQPI 93
AATIS T+VP PVPKL QP+
Sbjct: 330 AATISRTEVPRPVPKL*AVQPM 265
>gb|CF399227.1|CF399227 RTDS3_27_G09.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_27_G09_A022 3', mRNA sequence
Length = 644
Score = 136 bits (292), Expect = 1e-031
Identities = 55/83 (66%), Positives = 58/83 (69%)
Frame = +1 / +2
Query: 94 IGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVFAGRRPGDAEIVYXXXXXXXXXXXXX 273
IGC YNLGTG+GTSVLEMVAAFEKASGK IPL F RRPGDA VY
Sbjct: 116 IGCTAYNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPGDATAVYASTEKAERELGWK 295
Query: 274 XXYGIEEMCRDLWNWASKNPYGY 342
YGIEEMCRD WNWA +NP+GY
Sbjct: 296 AKYGIEEMCRDQWNWARQNPWGY 364
>gb|CX648482.1|CX648482 COLD1_29_A03.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_29_A03_A029 3', mRNA sequence
Length = 666
Score = 136 bits (292), Expect = 1e-031
Identities = 55/83 (66%), Positives = 58/83 (69%)
Frame = +1 / +1
Query: 94 IGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVFAGRRPGDAEIVYXXXXXXXXXXXXX 273
IGC YNLGTG+GTSVLEMVAAFEKASGK IPL F RRPGDA VY
Sbjct: 139 IGCTAYNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPGDATAVYASTEKAERELGWK 318
Query: 274 XXYGIEEMCRDLWNWASKNPYGY 342
YGIEEMCRD WNWA +NP+GY
Sbjct: 319 AKYGIEEMCRDQWNWARQNPWGY 387
>gb|DR094115.1|DR094115 STRR1_12_C04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_C04_A033 5', mRNA sequence
Length = 847
Score = 136 bits (292), Expect = 1e-031
Identities = 55/83 (66%), Positives = 58/83 (69%)
Frame = +1 / +3
Query: 94 IGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVFAGRRPGDAEIVYXXXXXXXXXXXXX 273
IGC YNLGTG+GTSVLEMVAAFEKASGK IPL F RRPGDA VY
Sbjct: 438 IGCTAYNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPGDATAVYASTEKAERELGWK 617
Query: 274 XXYGIEEMCRDLWNWASKNPYGY 342
YGIEEMCRD WNWA +NP+GY
Sbjct: 618 AKYGIEEMCRDQWNWARQNPWGY 686
>gb|DR177347.1|DR177347 RTMNUT1_4_F09.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_4_F09_A029 5', mRNA sequence
Length = 746
Score = 136 bits (292), Expect = 1e-031
Identities = 55/83 (66%), Positives = 58/83 (69%)
Frame = +1 / -2
Query: 94 IGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVFAGRRPGDAEIVYXXXXXXXXXXXXX 273
IGC YNLGTG+GTSVLEMVAAFEKASGK IPL F RRPGDA VY
Sbjct: 457 IGCTAYNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPGDATAVYASTEKAERELGWK 278
Query: 274 XXYGIEEMCRDLWNWASKNPYGY 342
YGIEEMCRD WNWA +NP+GY
Sbjct: 277 AKYGIEEMCRDQWNWARQNPWGY 209
>gb|DR178249.1|DR178249 RTMNUT1_10_G12.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_10_G12_A029 3', mRNA sequence
Length = 777
Score = 136 bits (292), Expect = 1e-031
Identities = 55/83 (66%), Positives = 58/83 (69%)
Frame = +1 / +3
Query: 94 IGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVFAGRRPGDAEIVYXXXXXXXXXXXXX 273
IGC YNLGTG+GTSVLEMVAAFEKASGK IPL F RRPGDA VY
Sbjct: 258 IGCTAYNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPGDATAVYASTEKAERELGWK 437
Query: 274 XXYGIEEMCRDLWNWASKNPYGY 342
YGIEEMCRD WNWA +NP+GY
Sbjct: 438 AKYGIEEMCRDQWNWARQNPWGY 506
>gb|CF669944.1|CF669944 RTCNT1_47_C05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_47_C05_A029 3', mRNA sequence
Length = 611
Score = 135 bits (290), Expect = 3e-031
Identities = 54/83 (65%), Positives = 58/83 (69%)
Frame = +1 / +3
Query: 94 IGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVFAGRRPGDAEIVYXXXXXXXXXXXXX 273
+GC YNLGTG+GTSVLEMVAAFEKASGK IPL F RRPGDA VY
Sbjct: 84 LGCTAYNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPGDATAVYASTEKAERELGWK 263
Query: 274 XXYGIEEMCRDLWNWASKNPYGY 342
YGIEEMCRD WNWA +NP+GY
Sbjct: 264 AKYGIEEMCRDQWNWARQNPWGY 332
>gb|CF669954.1|CF669954 RTCNT1_47_D05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_47_D05_A029 3', mRNA sequence
Length = 673
Score = 134 bits (288), Expect = 5e-031
Identities = 54/82 (65%), Positives = 57/82 (69%)
Frame = +1 / +2
Query: 97 GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVFAGRRPGDAEIVYXXXXXXXXXXXXXX 276
GC YNLGTG+GTSVLEMVAAFEKASGK IPL F RRPGDA VY
Sbjct: 149 GCTAYNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPGDATAVYASTEKAERELGWKA 328
Query: 277 XYGIEEMCRDLWNWASKNPYGY 342
YGIEEMCRD WNWA +NP+GY
Sbjct: 329 KYGIEEMCRDQWNWARQNPWGY 394
>gb|DR744847.1|DR744847 RTCU1_25_G06.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_25_G06_A029 3', mRNA sequence
Length = 591
Score = 134 bits (288), Expect = 5e-031
Identities = 55/83 (66%), Positives = 57/83 (68%)
Frame = +1 / +2
Query: 94 IGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVFAGRRPGDAEIVYXXXXXXXXXXXXX 273
IGC YNLGTG+GTSVLEMVAAFEKASGK IPL F RRPGDA VY
Sbjct: 92 IGCTAYNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPGDATAVYASTEKAERELGWK 271
Query: 274 XXYGIEEMCRDLWNWASKNPYGY 342
YGIEEMCRD WNWA +NP GY
Sbjct: 272 AKYGIEEMCRDQWNWARQNPRGY 340
>gb|CX649716.1|CX649716 COLD1_41_C01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_41_C01_A029 3', mRNA sequence
Length = 665
Score = 79.4 bits (167), Expect(2) = 9e-029
Identities = 30/54 (55%), Positives = 32/54 (59%)
Frame = +1 / -3
Query: 181 KIPLVFAGRRPGDAEIVYXXXXXXXXXXXXXXXYGIEEMCRDLWNWASKNPYGY 342
KIPL A RRPGD E VY YG+EEMCRD WNW SKNP+GY
Sbjct: 522 KIPLRIADRRPGDVETVYASTEKAERELNWKAKYGVEEMCRDQWNWTSKNPWGY 361
Score = 67.5 bits (141), Expect(2) = 9e-029
Identities = 27/29 (93%), Positives = 29/29 (100%)
Frame = +1 / -2
Query: 94 IGCEVYNLGTGKGTSVLEMVAAFEKASGK 180
+GCEVYNLGTG+GTSVLEMVAAFEKASGK
Sbjct: 607 LGCEVYNLGTGQGTSVLEMVAAFEKASGK 521
Score = 61.1 bits (127), Expect(2) = 3e-021
Identities = 28/55 (50%), Positives = 31/55 (56%)
Frame = -3 / +2
Query: 344 AYPYGFLLAQFHRSLHISSIPYXXXXXXXXXXXXXXX*TISASPGLRPANTRGIF 180
+YP GFLL QFH S HISS PY *T+S SPGLR A +GIF
Sbjct: 359 SYPQGFLLVQFHWSRHISSTPYLAFQFNSRSAFSVDA*TVSTSPGLRSAILKGIF 523
Score = 60.6 bits (126), Expect(2) = 3e-021
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = -3 / +3
Query: 182 FFPEAFSNAATISNTDVPFPVPKLYTSQP 96
FFPEAFSNAATIS TDVP PVP+L TSQP
Sbjct: 519 FFPEAFSNAATISRTDVPCPVPRL*TSQP 605
>gb|CX649795.1|CX649795 COLD1_41_C01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_41_C01_A029 5', mRNA sequence
Length = 634
Score = 79.4 bits (167), Expect(2) = 9e-029
Identities = 30/54 (55%), Positives = 32/54 (59%)
Frame = +1 / -3
Query: 181 KIPLVFAGRRPGDAEIVYXXXXXXXXXXXXXXXYGIEEMCRDLWNWASKNPYGY 342
KIPL A RRPGD E VY YG+EEMCRD WNW SKNP+GY
Sbjct: 494 KIPLRIADRRPGDVETVYASTEKAERELNWKAKYGVEEMCRDQWNWTSKNPWGY 333
Score = 67.5 bits (141), Expect(2) = 9e-029
Identities = 27/29 (93%), Positives = 29/29 (100%)
Frame = +1 / -2
Query: 94 IGCEVYNLGTGKGTSVLEMVAAFEKASGK 180
+GCEVYNLGTG+GTSVLEMVAAFEKASGK
Sbjct: 579 LGCEVYNLGTGQGTSVLEMVAAFEKASGK 493
Score = 61.1 bits (127), Expect(2) = 3e-021
Identities = 28/55 (50%), Positives = 31/55 (56%)
Frame = -3 / +1
Query: 344 AYPYGFLLAQFHRSLHISSIPYXXXXXXXXXXXXXXX*TISASPGLRPANTRGIF 180
+YP GFLL QFH S HISS PY *T+S SPGLR A +GIF
Sbjct: 331 SYPQGFLLVQFHWSRHISSTPYLAFQFNSRSAFSVDA*TVSTSPGLRSAILKGIF 495
Score = 60.6 bits (126), Expect(2) = 3e-021
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = -3 / +2
Query: 182 FFPEAFSNAATISNTDVPFPVPKLYTSQP 96
FFPEAFSNAATIS TDVP PVP+L TSQP
Sbjct: 491 FFPEAFSNAATISRTDVPCPVPRL*TSQP 577
>gb|BX678886.1|BX678886 BX678886 RS Pinus pinaster cDNA clone RS16E09, mRNA sequence
Length = 661
Score = 123 bits (264), Expect = 1e-027
Identities = 51/76 (67%), Positives = 52/76 (68%)
Frame = +1 / +3
Query: 94 IGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVFAGRRPGDAEIVYXXXXXXXXXXXXX 273
IGC YNLGTG+GTSVLEMVAAFEKASGK IPL F RRPGDA VY
Sbjct: 429 IGCTAYNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPGDATAVYASTEKAERELDWK 608
Query: 274 XXYGIEEMCRDLWNWA 321
YGIEEMCRD WNWA
Sbjct: 609 AKYGIEEMCRDQWNWA 656
>gb|BG275620.1|BG275620 NXSI_144_A03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_144_A03 5' similar to Arabidopsis thaliana
sequence At1g12780 uridine diphosphate glucose epimerase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 522
Score = 116 bits (247), Expect = 2e-025
Identities = 53/83 (63%), Positives = 55/83 (66%)
Frame = +1 / +1
Query: 94 IGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVFAGRRPGDAEIVYXXXXXXXXXXXXX 273
IGC YNLGTG+GTSVLEMVAAFEKASGK IPL F RRPGDA VY
Sbjct: 271 IGCTAYNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPGDATAVYASTEXXERELGXX 450
Query: 274 XXYGIEEMCRDLWNWASKNPYGY 342
YGI EMC WA P+GY
Sbjct: 451 AKYGIXEMCXXXXXWAKXKPWGY 519
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 338,667,341
Number of Sequences: 355925
Number of extensions: 4924911
Number of successful extensions: 50229
Number of sequences better than 1.0e-020: 18
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 9543423165
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)