TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4534747.2.1
(628 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO166677.1|CO166677 FLD1_63_E10.g1_A029 Root flooded Pin... 159 4e-064
gb|DR163606.1|DR163606 RTFE1_43_H03.g1_A029 Roots minus iro... 159 4e-064
gb|DR163514.1|DR163514 RTFE1_43_H03.b1_A029 Roots minus iro... 159 4e-064
gb|DR095991.1|DR095991 STRR1_25_B08.b1_A033 Stem Response R... 158 6e-064
gb|CX652350.1|CX652350 COLD1_58_B10.g1_A029 Root cold Pinus... 159 2e-063
gb|DR047931.1|DR047931 RTBOR1_5_C10.g2_A029 Roots plus adde... 156 3e-063
gb|DR023271.1|DR023271 STRS1_56_B12.g1_A034 Shoot tip pitch... 156 4e-063
gb|DR060851.1|DR060851 RTNIT1_30_A04.g1_A029 Roots minus ni... 155 1e-061
gb|DR018738.1|DR018738 STRS1_25_H09.b1_A034 Shoot tip pitch... 153 4e-061
gb|DR088977.1|DR088977 RTAL1_5_G05.g1_A029 Roots plus added... 152 8e-060
gb|DR117407.1|DR117407 RTMG1_6_F10.g1_A029 Roots minus magn... 150 8e-057
gb|BX255099.1|BX255099 BX255099 Pinus pinaster differenciat... 155 8e-054
gb|CF401310.1|CF401310 RTWW1_11_E11.g1_A015 Well-watered lo... 136 6e-050
gb|DR088892.1|DR088892 RTAL1_5_G05.b1_A029 Roots plus added... 99 4e-043
gb|DR060775.1|DR060775 RTNIT1_30_A04.b1_A029 Roots minus ni... 155 9e-039
gb|DR058919.1|DR058919 RTNIT1_14_E01.g1_A029 Roots minus ni... 138 3e-032
gb|DR058833.1|DR058833 RTNIT1_14_E01.b1_A029 Roots minus ni... 105 6e-032
gb|DR049993.1|DR049993 RTBOR1_20_C02.g1_A029 Roots plus add... 99 7e-031
gb|BE496448.1|BE496448 NXCI_018_C03_F NXCI (Nsf Xylem Compr... 99 2e-030
gb|CF395349.1|CF395349 RTDS2_11_A05.b1_A021 Drought-stresse... 95 3e-029
gb|CF398598.1|CF398598 RTDS3_13_D12.b1_A022 Drought-stresse... 105 4e-029
gb|DR049315.1|DR049315 RTBOR1_15_H05.b1_A029 Roots plus add... 92 3e-027
gb|CO172421.1|CO172421 NDL1_29_D06.g1_A029 Needles control ... 82 3e-025
gb|CO172345.1|CO172345 NDL1_29_D06.b1_A029 Needles control ... 82 3e-025
gb|DR058015.1|DR058015 RTNIT1_9_D10.b1_A029 Roots minus nit... 79 3e-024
gb|DR049307.1|DR049307 RTBOR1_15_G04.b1_A029 Roots plus add... 79 2e-023
gb|DR684550.1|DR684550 EST1074627 Normalized pine embryo li... 99 2e-023
gb|DR058708.1|DR058708 RTNIT1_13_A02.g1_A029 Roots minus ni... 77 8e-023
gb|AW011438.1|AW011438 ST20G06 Pine TriplEx shoot tip libra... 71 5e-022
gb|CO196899.1|CO196899 GEO1_2_A08.g1_A029 Root gravitropism... 91 6e-021
>gb|CO166677.1|CO166677 FLD1_63_E10.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_63_E10_A029 5', mRNA sequence
Length = 882
Score = 159 bits (341), Expect(2) = 4e-064
Identities = 63/84 (75%), Positives = 71/84 (84%)
Frame = +2 / -2
Query: 17 IKDGSLQLEFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTT 196
+ +L E AEPT ARS SFVGTHEYLAPEI++G+GHGSAVDWWTFGIFLYELL+GTT
Sbjct: 731 VNQATLLPELIAEPTSARSMSFVGTHEYLAPEIIKGQGHGSAVDWWTFGIFLYELLYGTT 552
Query: 197 PFKGDSNRATLCNVVDQPLRFPDA 268
PFKG SNR TL NVV QPL+FPD+
Sbjct: 551 PFKGASNRETLENVVGQPLKFPDS 480
Score = 127 bits (271), Expect(2) = 3e-040
Identities = 53/75 (70%), Positives = 63/75 (84%)
Frame = -2 / +1
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVP 85
SGN +G TT +V+RLL+PLNGVVP SSY+K+P VHQSTALPWP PL ISGA+YS VP
Sbjct: 484 SGNFNGCPTTFSNVSRLLAPLNGVVP*SSSYKKIPNVHQSTALPWPCPLIISGAKYS*VP 663
Query: 84 TNDVDRASVGSALNS 40
TND+DRA VGSA++S
Sbjct: 664 TNDMDRALVGSAISS 708
Score = 105 bits (225), Expect(2) = 4e-064
Identities = 42/64 (65%), Positives = 47/64 (73%)
Frame = +2 / -2
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADLGR 463
VS ARDLIRGLLVKDPQ RI +RGA EIKQHPFFD NWAL+R PP +P P DL
Sbjct: 473 VSFAARDLIRGLLVKDPQHRIGFKRGATEIKQHPFFDSANWALIRSTTPPQIPKPVDLSF 294
Query: 464 VASK 475
+ +K
Sbjct: 293 LTNK 282
Score = 58.3 bits (121), Expect(2) = 3e-040
Identities = 26/41 (63%), Positives = 28/41 (68%)
Frame = -2 / +1
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRATVLT 283
Q SKNGCCLIS APLL IL GSFT P ++SRA LT
Sbjct: 352 QFALSKNGCCLISVAPLLKPILCCGSFTSKPLIKSRAAKLT 474
>gb|DR163606.1|DR163606 RTFE1_43_H03.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_43_H03_A029 5', mRNA sequence
Length = 871
Score = 159 bits (341), Expect(2) = 4e-064
Identities = 63/84 (75%), Positives = 71/84 (84%)
Frame = +2 / +2
Query: 17 IKDGSLQLEFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTT 196
+ +L E AEPT ARS SFVGTHEYLAPEI++G+GHGSAVDWWTFGIFLYELL+GTT
Sbjct: 173 VNQATLLPELIAEPTSARSMSFVGTHEYLAPEIIKGQGHGSAVDWWTFGIFLYELLYGTT 352
Query: 197 PFKGDSNRATLCNVVDQPLRFPDA 268
PFKG SNR TL NVV QPL+FPD+
Sbjct: 353 PFKGASNRETLENVVGQPLKFPDS 424
Score = 127 bits (271), Expect(2) = 3e-040
Identities = 53/75 (70%), Positives = 63/75 (84%)
Frame = -2 / -2
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVP 85
SGN +G TT +V+RLL+PLNGVVP SSY+K+P VHQSTALPWP PL ISGA+YS VP
Sbjct: 420 SGNFNGCPTTFSNVSRLLAPLNGVVP*SSSYKKIPNVHQSTALPWPCPLIISGAKYS*VP 241
Query: 84 TNDVDRASVGSALNS 40
TND+DRA VGSA++S
Sbjct: 240 TNDMDRALVGSAISS 196
Score = 105 bits (225), Expect(2) = 4e-064
Identities = 42/64 (65%), Positives = 47/64 (73%)
Frame = +2 / +2
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADLGR 463
VS ARDLIRGLLVKDPQ RI +RGA EIKQHPFFD NWAL+R PP +P P DL
Sbjct: 431 VSFAARDLIRGLLVKDPQHRIGFKRGATEIKQHPFFDSANWALIRSTTPPQIPKPVDLSF 610
Query: 464 VASK 475
+ +K
Sbjct: 611 LTNK 622
Score = 58.3 bits (121), Expect(2) = 3e-040
Identities = 26/41 (63%), Positives = 28/41 (68%)
Frame = -2 / -2
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRATVLT 283
Q SKNGCCLIS APLL IL GSFT P ++SRA LT
Sbjct: 552 QFALSKNGCCLISVAPLLKPILCCGSFTSKPLIKSRAAKLT 430
>gb|DR163514.1|DR163514 RTFE1_43_H03.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_43_H03_A029 3', mRNA sequence
Length = 774
Score = 159 bits (341), Expect(2) = 4e-064
Identities = 63/84 (75%), Positives = 71/84 (84%)
Frame = +2 / +3
Query: 17 IKDGSLQLEFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTT 196
+ +L E AEPT ARS SFVGTHEYLAPEI++G+GHGSAVDWWTFGIFLYELL+GTT
Sbjct: 36 VNQATLLPELIAEPTSARSMSFVGTHEYLAPEIIKGQGHGSAVDWWTFGIFLYELLYGTT 215
Query: 197 PFKGDSNRATLCNVVDQPLRFPDA 268
PFKG SNR TL NVV QPL+FPD+
Sbjct: 216 PFKGASNRETLENVVGQPLKFPDS 287
Score = 127 bits (271), Expect(2) = 3e-040
Identities = 53/75 (70%), Positives = 63/75 (84%)
Frame = -2 / -3
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVP 85
SGN +G TT +V+RLL+PLNGVVP SSY+K+P VHQSTALPWP PL ISGA+YS VP
Sbjct: 283 SGNFNGCPTTFSNVSRLLAPLNGVVP*SSSYKKIPNVHQSTALPWPCPLIISGAKYS*VP 104
Query: 84 TNDVDRASVGSALNS 40
TND+DRA VGSA++S
Sbjct: 103 TNDMDRALVGSAISS 59
Score = 105 bits (225), Expect(2) = 4e-064
Identities = 42/64 (65%), Positives = 47/64 (73%)
Frame = +2 / +3
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADLGR 463
VS ARDLIRGLLVKDPQ RI +RGA EIKQHPFFD NWAL+R PP +P P DL
Sbjct: 294 VSFAARDLIRGLLVKDPQHRIGFKRGATEIKQHPFFDSANWALIRSTTPPQIPKPVDLSF 473
Query: 464 VASK 475
+ +K
Sbjct: 474 LTNK 485
Score = 58.3 bits (121), Expect(2) = 3e-040
Identities = 26/41 (63%), Positives = 28/41 (68%)
Frame = -2 / -3
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRATVLT 283
Q SKNGCCLIS APLL IL GSFT P ++SRA LT
Sbjct: 415 QFALSKNGCCLISVAPLLKPILCCGSFTSKPLIKSRAAKLT 293
>gb|DR095991.1|DR095991 STRR1_25_B08.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_25_B08_A033 3', mRNA sequence
Length = 843
Score = 158 bits (340), Expect(2) = 6e-064
Identities = 63/83 (75%), Positives = 70/83 (84%)
Frame = +2 / +3
Query: 17 IKDGSLQLEFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTT 196
+ +L E AEPT ARS SFVGTHEYLAPEI++G+GHGSAVDWWTFGIFLYELL+GTT
Sbjct: 216 VNQATLLPELIAEPTSARSMSFVGTHEYLAPEIIKGQGHGSAVDWWTFGIFLYELLYGTT 395
Query: 197 PFKGDSNRATLCNVVDQPLRFPD 265
PFKG SNR TL NVV QPL+FPD
Sbjct: 396 PFKGASNRETLENVVGQPLKFPD 464
Score = 127 bits (271), Expect(2) = 3e-040
Identities = 53/75 (70%), Positives = 63/75 (84%)
Frame = -2 / -3
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVP 85
SGN +G TT +V+RLL+PLNGVVP SSY+K+P VHQSTALPWP PL ISGA+YS VP
Sbjct: 463 SGNFNGCPTTFSNVSRLLAPLNGVVP*SSSYKKIPNVHQSTALPWPCPLIISGAKYS*VP 284
Query: 84 TNDVDRASVGSALNS 40
TND+DRA VGSA++S
Sbjct: 283 TNDMDRALVGSAISS 239
Score = 105 bits (225), Expect(2) = 6e-064
Identities = 42/64 (65%), Positives = 47/64 (73%)
Frame = +2 / +3
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADLGR 463
VS ARDLIRGLLVKDPQ RI +RGA EIKQHPFFD NWAL+R PP +P P DL
Sbjct: 474 VSFAARDLIRGLLVKDPQHRIGFKRGATEIKQHPFFDSANWALIRSTTPPQIPKPVDLSF 653
Query: 464 VASK 475
+ +K
Sbjct: 654 LTNK 665
Score = 58.3 bits (121), Expect(2) = 3e-040
Identities = 26/41 (63%), Positives = 28/41 (68%)
Frame = -2 / -3
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRATVLT 283
Q SKNGCCLIS APLL IL GSFT P ++SRA LT
Sbjct: 595 QFALSKNGCCLISVAPLLKPILCCGSFTSKPLIKSRAAKLT 473
>gb|CX652350.1|CX652350 COLD1_58_B10.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_58_B10_A029 5', mRNA sequence
Length = 781
Score = 159 bits (341), Expect(2) = 2e-063
Identities = 63/84 (75%), Positives = 71/84 (84%)
Frame = +2 / -1
Query: 17 IKDGSLQLEFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTT 196
+ +L E AEPT ARS SFVGTHEYLAPEI++G+GHGSAVDWWTFGIFLYELL+GTT
Sbjct: 643 VNQATLLPELIAEPTSARSMSFVGTHEYLAPEIIKGQGHGSAVDWWTFGIFLYELLYGTT 464
Query: 197 PFKGDSNRATLCNVVDQPLRFPDA 268
PFKG SNR TL NVV QPL+FPD+
Sbjct: 463 PFKGASNRETLENVVGQPLKFPDS 392
Score = 127 bits (271), Expect(2) = 4e-040
Identities = 53/75 (70%), Positives = 63/75 (84%)
Frame = -2 / +3
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVP 85
SGN +G TT +V+RLL+PLNGVVP SSY+K+P VHQSTALPWP PL ISGA+YS VP
Sbjct: 396 SGNFNGCPTTFSNVSRLLAPLNGVVP*SSSYKKIPNVHQSTALPWPCPLIISGAKYS*VP 575
Query: 84 TNDVDRASVGSALNS 40
TND+DRA VGSA++S
Sbjct: 576 TNDMDRALVGSAISS 620
Score = 103 bits (220), Expect(2) = 2e-063
Identities = 41/64 (64%), Positives = 46/64 (71%)
Frame = +2 / -1
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADLGR 463
VS ARDLIRGLLVKDPQ RI +RGA E KQHPFFD NWAL+R PP +P P DL
Sbjct: 385 VSFAARDLIRGLLVKDPQHRIGFKRGATETKQHPFFDSANWALIRSTTPPQIPKPVDLSF 206
Query: 464 VASK 475
+ +K
Sbjct: 205 LTNK 194
Score = 57.9 bits (120), Expect(2) = 4e-040
Identities = 25/41 (60%), Positives = 28/41 (68%)
Frame = -2 / +3
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRATVLT 283
Q SKNGCCL+S APLL IL GSFT P ++SRA LT
Sbjct: 264 QFALSKNGCCLVSVAPLLKPILCCGSFTSKPLIKSRAAKLT 386
>gb|DR047931.1|DR047931 RTBOR1_5_C10.g2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_5_C10_A029 5', mRNA sequence
Length = 787
Score = 156 bits (335), Expect(2) = 3e-063
Identities = 62/84 (73%), Positives = 70/84 (83%)
Frame = +2 / -1
Query: 17 IKDGSLQLEFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTT 196
+ +L E AEPT ARS SFVGTHEYLAPEI++G+GHGSAVDWWTFGIFLYELL+GT
Sbjct: 619 VNQATLLPELIAEPTSARSMSFVGTHEYLAPEIIKGQGHGSAVDWWTFGIFLYELLYGTI 440
Query: 197 PFKGDSNRATLCNVVDQPLRFPDA 268
PFKG SNR TL NVV QPL+FPD+
Sbjct: 439 PFKGASNRETLENVVGQPLKFPDS 368
Score = 126 bits (270), Expect(2) = 4e-040
Identities = 52/75 (69%), Positives = 63/75 (84%)
Frame = -2 / +3
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVP 85
SGN +G TT +V+RLL+PLNG+VP SSY+K+P VHQSTALPWP PL ISGA+YS VP
Sbjct: 372 SGNFNGCPTTFSNVSRLLAPLNGIVP*SSSYKKIPNVHQSTALPWPCPLIISGAKYS*VP 551
Query: 84 TNDVDRASVGSALNS 40
TND+DRA VGSA++S
Sbjct: 552 TNDMDRALVGSAISS 596
Score = 105 bits (225), Expect(2) = 3e-063
Identities = 42/64 (65%), Positives = 47/64 (73%)
Frame = +2 / -1
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADLGR 463
VS ARDLIRGLLVKDPQ RI +RGA EIKQHPFFD NWAL+R PP +P P DL
Sbjct: 361 VSFAARDLIRGLLVKDPQHRIGFKRGATEIKQHPFFDSANWALIRSTTPPQIPKPVDLSF 182
Query: 464 VASK 475
+ +K
Sbjct: 181 LTNK 170
Score = 58.3 bits (121), Expect(2) = 4e-040
Identities = 26/41 (63%), Positives = 28/41 (68%)
Frame = -2 / +3
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRATVLT 283
Q SKNGCCLIS APLL IL GSFT P ++SRA LT
Sbjct: 240 QFALSKNGCCLISVAPLLKPILCCGSFTSKPLIKSRAAKLT 362
>gb|DR023271.1|DR023271 STRS1_56_B12.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_56_B12_A034 5', mRNA sequence
Length = 835
Score = 156 bits (336), Expect(2) = 4e-063
Identities = 62/76 (81%), Positives = 66/76 (86%)
Frame = +2 / +2
Query: 41 EFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNR 220
E AEPT ARS SFVGTHEYLAPEI++GEGHGSAVDWWTFGIFLYELL G TPFKG NR
Sbjct: 293 ELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNR 472
Query: 221 ATLCNVVDQPLRFPDA 268
ATL NVV QPLRFP++
Sbjct: 473 ATLFNVVGQPLRFPES 520
Score = 121 bits (258), Expect(2) = 5e-037
Identities = 54/75 (72%), Positives = 60/75 (80%)
Frame = -2 / -2
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVP 85
SGN G TTL+SVARL PL GV P RSSYR +P VHQSTALP PSPL ISGARYS VP
Sbjct: 516 SGNLRGCPTTLNSVARLPEPLKGVFPNRSSYRNIPNVHQSTALP*PSPLIISGARYSWVP 337
Query: 84 TNDVDRASVGSALNS 40
TND++RA VGSA++S
Sbjct: 336 TNDMERALVGSAISS 292
Score = 105 bits (223), Expect(2) = 4e-063
Identities = 41/58 (70%), Positives = 48/58 (82%)
Frame = +2 / +2
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADL 457
VS ARDLIRGLLVK+PQ R+A +RGA EIKQHPFF+GVNWAL+R A PP +P P D+
Sbjct: 527 VSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKPIDI 700
Score = 53.3 bits (110), Expect(2) = 5e-037
Identities = 24/41 (58%), Positives = 26/41 (63%)
Frame = -2 / -2
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRATVLT 283
Q TPSK GCCLIS AP L A GSFT P ++S A LT
Sbjct: 648 QFTPSKKGCCLISVAPRLYANRCCGSFTSKPLIKSLAAKLT 526
>gb|DR060851.1|DR060851 RTNIT1_30_A04.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_30_A04_A029 5', mRNA sequence
Length = 730
Score = 155 bits (333), Expect(2) = 1e-061
Identities = 61/77 (79%), Positives = 67/77 (87%)
Frame = +2 / -1
Query: 38 LEFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSN 217
LE AEPT ARS SFVGTHEYLAPEI++GEGHGSAVDWWTFGIFL+EL+ G TPFKG N
Sbjct: 631 LELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELIFGKTPFKGSGN 452
Query: 218 RATLCNVVDQPLRFPDA 268
RATL NVV QPLRFP++
Sbjct: 451 RATLFNVVGQPLRFPES 401
Score = 115 bits (245), Expect(2) = 2e-034
Identities = 52/75 (69%), Positives = 58/75 (77%)
Frame = -2 / +3
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVP 85
SGN G TTL VARL PLNGV P SS R +PKVHQSTALP PSPL ISGA+YS VP
Sbjct: 405 SGNLRGCPTTLKRVARLPDPLNGVFPKISSCRNIPKVHQSTALPCPSPLIISGAKYSWVP 584
Query: 84 TNDVDRASVGSALNS 40
TND++RA VGSA++S
Sbjct: 585 TNDMERALVGSAMSS 629
Score = 101 bits (215), Expect(2) = 1e-061
Identities = 40/63 (63%), Positives = 48/63 (76%)
Frame = +2 / -1
Query: 287 STVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADLGRV 466
S ARDLIRGLLVK+PQ R+A +RGA EIKQHPFF+GVNWAL+R PP +P P ++
Sbjct: 391 SFAARDLIRGLLVKEPQHRLAVKRGATEIKQHPFFEGVNWALIRCTTPPDIPKPFEIELP 212
Query: 467 ASK 475
A K
Sbjct: 211 AKK 203
Score = 50.6 bits (104), Expect(2) = 2e-034
Identities = 23/40 (57%), Positives = 25/40 (62%)
Frame = -2 / +3
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRATVL 286
Q TPSK GCCLIS AP L A GSFT P ++S A L
Sbjct: 273 QFTPSKKGCCLISVAPRLTAKRC*GSFTSKPLIKSLAAKL 392
>gb|DR018738.1|DR018738 STRS1_25_H09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_25_H09_A034 3', mRNA sequence
Length = 838
Score = 153 bits (329), Expect(2) = 4e-061
Identities = 60/76 (78%), Positives = 66/76 (86%)
Frame = +2 / +2
Query: 41 EFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNR 220
E AEPT ARS SFVGTHEYLAPEI++GEGHGSAVDWWTFGIFL+EL+ G TPFKG NR
Sbjct: 2 ELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELIFGKTPFKGSGNR 181
Query: 221 ATLCNVVDQPLRFPDA 268
ATL NVV QPLRFP++
Sbjct: 182 ATLFNVVGQPLRFPES 229
Score = 115 bits (245), Expect(2) = 2e-034
Identities = 52/75 (69%), Positives = 58/75 (77%)
Frame = -2 / -2
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVP 85
SGN G TTL VARL PLNGV P SS R +PKVHQSTALP PSPL ISGA+YS VP
Sbjct: 225 SGNLRGCPTTLKRVARLPDPLNGVFPKISSCRNIPKVHQSTALPCPSPLIISGAKYSWVP 46
Query: 84 TNDVDRASVGSALNS 40
TND++RA VGSA++S
Sbjct: 45 TNDMERALVGSAMSS 1
Score = 101 bits (215), Expect(2) = 4e-061
Identities = 40/63 (63%), Positives = 48/63 (76%)
Frame = +2 / +2
Query: 287 STVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADLGRV 466
S ARDLIRGLLVK+PQ R+A +RGA EIKQHPFF+GVNWAL+R PP +P P ++
Sbjct: 239 SFAARDLIRGLLVKEPQHRLAVKRGATEIKQHPFFEGVNWALIRCTTPPDIPKPFEIELP 418
Query: 467 ASK 475
A K
Sbjct: 419 AKK 427
Score = 50.6 bits (104), Expect(2) = 2e-034
Identities = 23/40 (57%), Positives = 25/40 (62%)
Frame = -2 / -2
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRATVL 286
Q TPSK GCCLIS AP L A GSFT P ++S A L
Sbjct: 357 QFTPSKKGCCLISVAPRLTAKRC*GSFTSKPLIKSLAAKL 238
>gb|DR088977.1|DR088977 RTAL1_5_G05.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_5_G05_A029 5', mRNA sequence
Length = 853
Score = 152 bits (326), Expect(2) = 8e-060
Identities = 61/75 (81%), Positives = 65/75 (86%)
Frame = +2 / +2
Query: 41 EFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNR 220
E AEPT ARS SFVGTHEYLAPEIV+GEGHGSAVDWWT+GIFLYELL G TPFKG SN
Sbjct: 140 ELVAEPTSARSNSFVGTHEYLAPEIVKGEGHGSAVDWWTYGIFLYELLFGKTPFKGASNT 319
Query: 221 ATLCNVVDQPLRFPD 265
ATL NVV QPL+FP+
Sbjct: 320 ATLNNVVGQPLKFPE 364
Score = 119 bits (255), Expect(2) = 3e-035
Identities = 54/75 (72%), Positives = 60/75 (80%)
Frame = -2 / -2
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVP 85
SGN G TTL SVA LL+PLNGV P RSSY+ +P VHQSTALP PSPLTISGA+YSCVP
Sbjct: 363 SGNLRGCPTTLLSVAVLLAPLNGVFPNRSSYKNIP*VHQSTALP*PSPLTISGAKYSCVP 184
Query: 84 TNDVDRASVGSALNS 40
TN+ D A VGSA +S
Sbjct: 183 TNEFDLALVGSATSS 139
Score = 98.7 bits (209), Expect(2) = 8e-060
Identities = 38/57 (66%), Positives = 47/57 (82%)
Frame = +2 / +2
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPAD 454
VS A+DLIRGLLVK+PQ R+A +RGA EIKQHPFF+G+NWAL+R + PP VP P +
Sbjct: 374 VSYAAKDLIRGLLVKEPQHRLAFKRGATEIKQHPFFEGLNWALIRCSTPPEVPKPLE 544
Score = 48.7 bits (100), Expect(2) = 3e-035
Identities = 23/41 (56%), Positives = 25/41 (60%)
Frame = -2 / -2
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRATVLT 283
Q PSK GCCLIS AP L A GSFT P ++S A LT
Sbjct: 495 QFKPSKKGCCLISVAPRLNANRCCGSFTSKPLIKSLAA*LT 373
>gb|DR117407.1|DR117407 RTMG1_6_F10.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_6_F10_A029 5', mRNA sequence
Length = 831
Score = 150 bits (322), Expect(2) = 8e-057
Identities = 60/75 (80%), Positives = 64/75 (85%)
Frame = +2 / +3
Query: 41 EFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNR 220
E AEPT ARS SFVGTHEYLAPEIV+GEGHGSAVDWWT+GIFLYELL G TPFKG N
Sbjct: 447 ELVAEPTSARSNSFVGTHEYLAPEIVKGEGHGSAVDWWTYGIFLYELLFGKTPFKGAGNT 626
Query: 221 ATLCNVVDQPLRFPD 265
ATL NVV QPL+FP+
Sbjct: 627 ATLNNVVGQPLKFPE 671
Score = 116 bits (248), Expect(2) = 3e-034
Identities = 53/75 (70%), Positives = 59/75 (78%)
Frame = -2 / -3
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVP 85
SGN G TTL SVA L +PLNGV P RSSY+ +P VHQSTALP PSPLTISGA+YSCVP
Sbjct: 670 SGNLRGCPTTLLSVAVLPAPLNGVFPNRSSYKNIP*VHQSTALP*PSPLTISGAKYSCVP 491
Query: 84 TNDVDRASVGSALNS 40
TN+ D A VGSA +S
Sbjct: 490 TNEFDLALVGSATSS 446
Score = 90.4 bits (191), Expect(2) = 8e-057
Identities = 35/50 (70%), Positives = 43/50 (86%)
Frame = +2 / +3
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPP 433
VS A+DLIRGLLVK+PQ R+A +RGA EIKQHPFF+G+NWAL+R + PP
Sbjct: 681 VSYAAKDLIRGLLVKEPQHRLAFKRGATEIKQHPFFEGLNWALIRCSTPP 830
Score = 48.7 bits (100), Expect(2) = 3e-034
Identities = 23/41 (56%), Positives = 25/41 (60%)
Frame = -2 / -3
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRATVLT 283
Q PSK GCCLIS AP L A GSFT P ++S A LT
Sbjct: 802 QFKPSKKGCCLISVAPRLNANRCCGSFTSKPLIKSLAA*LT 680
>gb|BX255099.1|BX255099 BX255099 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP110G11, mRNA sequence
Length = 505
Score = 155 bits (333), Expect(2) = 8e-054
Identities = 61/77 (79%), Positives = 67/77 (87%)
Frame = +2 / +3
Query: 38 LEFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSN 217
LE AEPT ARS SFVGTHEYLAPEI++GEGHGSAVDWWTFGIFL+EL+ G TPFKG N
Sbjct: 144 LELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELIFGKTPFKGSGN 323
Query: 218 RATLCNVVDQPLRFPDA 268
RATL NVV QPLRFP++
Sbjct: 324 RATLFNVVGQPLRFPES 374
Score = 115 bits (245), Expect(2) = 1e-033
Identities = 52/75 (69%), Positives = 58/75 (77%)
Frame = -2 / -1
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVP 85
SGN G TTL VARL PLNGV P SS R +PKVHQSTALP PSPL ISGA+YS VP
Sbjct: 370 SGNLRGCPTTLKRVARLPDPLNGVFPKISSCRNIPKVHQSTALPCPSPLIISGAKYSWVP 191
Query: 84 TNDVDRASVGSALNS 40
TND++RA VGSA++S
Sbjct: 190 TNDMERALVGSAMSS 146
Score = 75.3 bits (158), Expect(2) = 8e-054
Identities = 30/40 (75%), Positives = 34/40 (85%)
Frame = +2 / +3
Query: 287 STVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNW 406
S ARDLIRGLLVK+PQ R+A +RGA IKQHPFF+GVNW
Sbjct: 384 SFAARDLIRGLLVKEPQHRLAVKRGAN*IKQHPFFEGVNW 503
Score = 47.8 bits (98), Expect(2) = 1e-033
Identities = 22/40 (55%), Positives = 24/40 (60%)
Frame = -2 / -1
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRATVL 286
Q TPSK GCCLI AP L A GSFT P ++S A L
Sbjct: 502 QFTPSKKGCCLIQFAPRLTAKRC*GSFTSKPLIKSLAAKL 383
>gb|CF401310.1|CF401310 RTWW1_11_E11.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_11_E11_A015 5', mRNA sequence
Length = 783
Score = 136 bits (291), Expect(2) = 6e-050
Identities = 50/74 (67%), Positives = 60/74 (81%)
Frame = +2 / +1
Query: 41 EFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNR 220
E AEPT+ARS SFVGTHEYLAPE++ G+GHGSAVDWWT G+FLYE+L G TPFKG
Sbjct: 343 ELIAEPTEARSRSFVGTHEYLAPEVISGKGHGSAVDWWTLGVFLYEMLFGRTPFKGAGKD 522
Query: 221 ATLCNVVDQPLRFP 262
+TL N++ PL+FP
Sbjct: 523 STLTNIITHPLKFP 564
Score = 101 bits (216), Expect(2) = 7e-027
Identities = 46/77 (59%), Positives = 54/77 (70%)
Frame = -2 / -2
Query: 270 VASGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSC 91
+++GN +GW SV +PLNGV P S RK P+VHQSTALP P P SGARYS
Sbjct: 572 ISTGNFNGWVMIFVSVESFPAPLNGVRPKSIS*RKTPRVHQSTALP*PLPEMTSGARYSW 393
Query: 90 VPTNDVDRASVGSALNS 40
VPT D+DRASVGSA+NS
Sbjct: 392 VPTKDLDRASVGSAINS 342
Score = 81.7 bits (172), Expect(2) = 6e-050
Identities = 30/48 (62%), Positives = 39/48 (81%)
Frame = +2 / +1
Query: 296 ARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSV 439
ARDLI+ LLVKDP++R+ + RGAA+IK+HPFF +NWAL+R PP V
Sbjct: 628 ARDLIKRLLVKDPRRRLGSARGAADIKKHPFFKNINWALIRSVPPPGV 771
Score = 38.6 bits (78), Expect(2) = 7e-027
Identities = 21/37 (56%), Positives = 22/37 (59%)
Frame = -2 / -2
Query: 405 QLTPSKNGCCLISAAPLLVAILFWGSFTRSPRMRSRA 295
QL K GC LISAAP GSFTRS +RSRA
Sbjct: 737 QLMFLKKGCFLISAAPRAEPRRLLGSFTRSRFIRSRA 627
>gb|DR088892.1|DR088892 RTAL1_5_G05.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_5_G05_A029 3', mRNA sequence
Length = 762
Score = 98.7 bits (209), Expect(2) = 4e-043
Identities = 38/57 (66%), Positives = 47/57 (82%)
Frame = +2 / +3
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPAD 454
VS A+DLIRGLLVK+PQ R+A +RGA EIKQHPFF+G+NWAL+R + PP VP P +
Sbjct: 150 VSYAAKDLIRGLLVKEPQHRLAFKRGATEIKQHPFFEGLNWALIRCSTPPEVPKPLE 320
Score = 96.4 bits (204), Expect(2) = 4e-043
Identities = 37/46 (80%), Positives = 40/46 (86%)
Frame = +2 / +3
Query: 128 GHGSAVDWWTFGIFLYELLHGTTPFKGDSNRATLCNVVDQPLRFPD 265
GHGSAVDWWT+GIFLYELL G TPFKG SN ATL NVV QPL+FP+
Sbjct: 3 GHGSAVDWWTYGIFLYELLFGKTPFKGASNTATLNNVVGQPLKFPE 140
>gb|DR060775.1|DR060775 RTNIT1_30_A04.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_30_A04_A029 3', mRNA sequence
Length = 785
Score = 155 bits (333), Expect(2) = 9e-039
Identities = 61/77 (79%), Positives = 67/77 (87%)
Frame = +2 / -1
Query: 38 LEFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSN 217
LE AEPT ARS SFVGTHEYLAPEI++GEGHGSAVDWWTFGIFL+EL+ G TPFKG N
Sbjct: 281 LELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELIFGKTPFKGSGN 102
Query: 218 RATLCNVVDQPLRFPDA 268
RATL NVV QPLRFP++
Sbjct: 101 RATLFNVVGQPLRFPES 51
Score = 115 bits (245), Expect = 4e-025
Identities = 52/75 (69%), Positives = 58/75 (77%)
Frame = -2 / +1
Query: 264 SGNRSGWSTTLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVP 85
SGN G TTL VARL PLNGV P SS R +PKVHQSTALP PSPL ISGA+YS VP
Sbjct: 55 SGNLRGCPTTLKRVARLPDPLNGVFPKISSCRNIPKVHQSTALPCPSPLIISGAKYSWVP 234
Query: 84 TNDVDRASVGSALNS 40
TND++RA VGSA++S
Sbjct: 235 TNDMERALVGSAMSS 279
Score = 24.9 bits (48), Expect(2) = 9e-039
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +2 / -1
Query: 287 STVARDLIRGLLV 325
S ARDLIRGLLV
Sbjct: 41 SFAARDLIRGLLV 3
>gb|DR058919.1|DR058919 RTNIT1_14_E01.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_14_E01_A029 5', mRNA sequence
Length = 587
Score = 138 bits (296), Expect = 3e-032
Identities = 55/66 (83%), Positives = 57/66 (86%)
Frame = +2 / +2
Query: 41 EFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNR 220
E AEPT ARS SFVGTHEYLAPEI++GEGHGSAVDWWTFGIFLYELL G TPFKG NR
Sbjct: 389 ELIAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNR 568
Query: 221 ATLCNV 238
ATL NV
Sbjct: 569 ATLFNV 586
Score = 111 bits (237), Expect = 5e-024
Identities = 49/66 (74%), Positives = 55/66 (83%)
Frame = -2 / -3
Query: 237 TLHSVARLLSPLNGVVPWRSSYRKMPKVHQSTALPWPSPLTISGARYSCVPTNDVDRASV 58
TL+SVARL PL GV P RSSYR +P VHQSTALP PSPL ISGARYS VPTND++RA V
Sbjct: 585 TLNSVARLPEPLKGVFPNRSSYRNIPNVHQSTALP*PSPLIISGARYSWVPTNDMERALV 406
Query: 57 GSALNS 40
GSA++S
Sbjct: 405 GSAISS 388
>gb|DR058833.1|DR058833 RTNIT1_14_E01.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_14_E01_A029 3', mRNA sequence
Length = 647
Score = 105 bits (223), Expect(2) = 6e-032
Identities = 41/58 (70%), Positives = 48/58 (82%)
Frame = +2 / +3
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADL 457
VS ARDLIRGLLVK+PQ R+A +RGA EIKQHPFF+GVNWAL+R A PP +P P D+
Sbjct: 120 VSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKPIDI 293
Score = 52.4 bits (108), Expect(2) = 6e-032
Identities = 21/34 (61%), Positives = 24/34 (70%)
Frame = +2 / +3
Query: 167 FLYELLHGTTPFKGDSNRATLCNVVDQPLRFPDA 268
+ Y G TPFKG NRATL NVV QPLRFP++
Sbjct: 12 YFYMTSVGKTPFKGSGNRATLFNVVGQPLRFPES 113
>gb|DR049993.1|DR049993 RTBOR1_20_C02.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_20_C02_A029 5', mRNA sequence
Length = 851
Score = 99.1 bits (210), Expect(2) = 7e-031
Identities = 39/80 (48%), Positives = 54/80 (67%)
Frame = +2 / -3
Query: 8 DSSIKDGSLQLEFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLH 187
DS+ L+ + + +S SFVGT EY+APEI+ G+GHG AVDWW FGI LYE+++
Sbjct: 645 DSARDTSFCNLDGSKDSVHEQSHSFVGTEEYVAPEILWGKGHGVAVDWWAFGILLYEMVY 466
Query: 188 GTTPFKGDSNRATLCNVVDQ 247
G TPFKG + + T N++ Q
Sbjct: 465 GKTPFKGCTRKETFYNIMCQ 406
Score = 54.7 bits (113), Expect(2) = 7e-031
Identities = 21/40 (52%), Positives = 27/40 (67%)
Frame = +2 / -3
Query: 287 STVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNW 406
S+ +DL+R LLVK+P R+ GA EIK H FF+GV W
Sbjct: 381 SSPLKDLLRALLVKEPTLRLGFNSGAQEIKNHKFFEGVRW 262
>gb|BE496448.1|BE496448 NXCI_018_C03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_018_C03 5' similar to Arabidopsis
thaliana sequence At5g03640 protein kinase -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 523
Score = 98.7 bits (209), Expect(2) = 2e-030
Identities = 38/54 (70%), Positives = 45/54 (83%)
Frame = +2 / +2
Query: 287 STVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDP 448
S A+DLIRGLLVKDP KR+A+ RGAAEIKQHPFF G+NWAL+R + PP +P P
Sbjct: 146 SAAAKDLIRGLLVKDPAKRMASARGAAEIKQHPFFRGINWALIRCSIPPHIPSP 307
Score = 53.8 bits (111), Expect(2) = 2e-030
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = +2 / +2
Query: 164 IFLYELLHGTTPFKGDSNRATLCNVVDQPLRFPD 265
IF++ELL+G TPF+G N TL NVV Q L FPD
Sbjct: 2 IFIFELLYGRTPFRGPDNDRTLANVVAQALHFPD 103
>gb|CF395349.1|CF395349 RTDS2_11_A05.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_11_A05_A021 3', mRNA sequence
Length = 508
Score = 95.0 bits (201), Expect(2) = 3e-029
Identities = 35/58 (60%), Positives = 46/58 (79%)
Frame = +2 / +1
Query: 68 RSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNRATLCNVV 241
+S SFVGT EY+APEI+ G+GHG AVDWW FGI LYE+++G TPFKG + + T N++
Sbjct: 31 QSHSFVGTEEYVAPEILWGKGHGIAVDWWAFGILLYEMVNGKTPFKGLTRKETFYNIL 204
Score = 53.3 bits (110), Expect(2) = 3e-029
Identities = 21/40 (52%), Positives = 28/40 (70%)
Frame = +2 / +1
Query: 287 STVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNW 406
S+ +DL+R LLVK+P R+ + GA EIK H FF+GV W
Sbjct: 235 SSPLQDLLRCLLVKEPSLRLGFKCGAQEIKNHEFFEGVRW 354
>gb|CF398598.1|CF398598 RTDS3_13_D12.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_13_D12_A022 3', mRNA sequence
Length = 722
Score = 105 bits (225), Expect(2) = 4e-029
Identities = 42/64 (65%), Positives = 47/64 (73%)
Frame = +2 / +3
Query: 284 VSTVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVRDAHPPSVPDPADLGR 463
VS ARDLIRGLLVKDPQ RI +RGA EIKQHPFFD NWAL+R PP +P P DL
Sbjct: 78 VSFAARDLIRGLLVKDPQHRIGFKRGATEIKQHPFFDSANWALIRSTTPPQIPKPVDLSF 257
Query: 464 VASK 475
+ +K
Sbjct: 258 LTNK 269
Score = 41.8 bits (85), Expect(2) = 4e-029
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +2 / +3
Query: 200 FKGDSNRATLCNVVDQPLRFPDA 268
FKG SNR TL NVV QPL+FPD+
Sbjct: 3 FKGASNRETLENVVGQPLKFPDS 71
>gb|DR049315.1|DR049315 RTBOR1_15_H05.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_15_H05_A029 3', mRNA sequence
Length = 675
Score = 91.8 bits (194), Expect(2) = 3e-027
Identities = 36/74 (48%), Positives = 45/74 (60%)
Frame = +2 / +3
Query: 5 SDSSIKDGSLQLEFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELL 184
S + D S + + RS SFVGT EY+APEIV G GH + DWW+ GI LYE+L
Sbjct: 27 SSRRLSDDSEDGTSTSSSSSGRSNSFVGTEEYVAPEIVSGSGHEFSADWWSLGILLYEML 206
Query: 185 HGTTPFKGDSNRAT 226
+G TPF+G R T
Sbjct: 207 YGKTPFRGSDKRET 248
Score = 50.1 bits (103), Expect(2) = 3e-027
Identities = 17/38 (44%), Positives = 27/38 (71%)
Frame = +2 / +3
Query: 302 DLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALV 415
DLI LL KDP++R+ +R G++++K H FF G+ W +
Sbjct: 306 DLILRLLEKDPRRRLGSRNGSSDVKDHGFFAGLRWDFI 419
>gb|CO172421.1|CO172421 NDL1_29_D06.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_29_D06_A029 5', mRNA sequence
Length = 841
Score = 81.7 bits (172), Expect(2) = 3e-025
Identities = 29/58 (50%), Positives = 41/58 (70%)
Frame = +2 / +3
Query: 68 RSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNRATLCNVV 241
+S SFVGT EY+APE++ GH VDWW+ GI +YE+ +G TPF+G S + T N++
Sbjct: 189 KSHSFVGTVEYIAPEVLWCTGHSFPVDWWSLGILMYEMKYGKTPFRGSSRKETFFNIM 362
Score = 53.3 bits (110), Expect(2) = 3e-025
Identities = 19/36 (52%), Positives = 25/36 (69%)
Frame = +2 / +3
Query: 299 RDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNW 406
+DLI+ LLVKDP KR+ GA ++K H FF G+ W
Sbjct: 402 KDLIKKLLVKDPSKRLGFSMGATDVKNHSFFHGLRW 509
>gb|CO172345.1|CO172345 NDL1_29_D06.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_29_D06_A029 3', mRNA sequence
Length = 759
Score = 81.7 bits (172), Expect(2) = 3e-025
Identities = 29/58 (50%), Positives = 41/58 (70%)
Frame = +2 / +2
Query: 68 RSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNRATLCNVV 241
+S SFVGT EY+APE++ GH VDWW+ GI +YE+ +G TPF+G S + T N++
Sbjct: 35 KSHSFVGTVEYIAPEVLWCTGHSFPVDWWSLGILMYEMKYGKTPFRGSSRKETFFNIM 208
Score = 53.3 bits (110), Expect(2) = 3e-025
Identities = 19/36 (52%), Positives = 25/36 (69%)
Frame = +2 / +2
Query: 299 RDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNW 406
+DLI+ LLVKDP KR+ GA ++K H FF G+ W
Sbjct: 248 KDLIKKLLVKDPSKRLGFSMGATDVKNHSFFHGLRW 355
>gb|DR058015.1|DR058015 RTNIT1_9_D10.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_9_D10_A029 3', mRNA sequence
Length = 518
Score = 79.4 bits (167), Expect(2) = 3e-024
Identities = 30/52 (57%), Positives = 39/52 (75%)
Frame = +2 / +3
Query: 86 GTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNRATLCNVV 241
GT EY+APEI+ G+GHG AVD W FGI LYE++ G TPFKG + + T N++
Sbjct: 3 GTEEYVAPEILWGKGHGIAVD*WAFGILLYEMVDGKTPFKGLTRKETFYNIL 158
Score = 52.4 bits (108), Expect(2) = 3e-024
Identities = 21/40 (52%), Positives = 28/40 (70%)
Frame = +2 / +2
Query: 287 STVARDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNW 406
S+ +DL+R LLVK+P R+ + GA EIK H FF+GV W
Sbjct: 260 SSPFQDLLRCLLVKEPTLRLGFKCGAQEIKNHEFFEGVRW 379
>gb|DR049307.1|DR049307 RTBOR1_15_G04.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_15_G04_A029 3', mRNA sequence
Length = 611
Score = 79.0 bits (166), Expect(2) = 2e-023
Identities = 30/54 (55%), Positives = 36/54 (66%)
Frame = +2 / +1
Query: 65 ARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNRAT 226
A S VGT EY+A EIV G GH + DWW+ GI LYE+L+G TPF+G R T
Sbjct: 22 AGPNSLVGTEEYVALEIVSGSGHEFSADWWSLGILLYEMLYGKTPFRGSDKRET 183
Score = 50.1 bits (103), Expect(2) = 2e-023
Identities = 17/38 (44%), Positives = 27/38 (71%)
Frame = +2 / +1
Query: 302 DLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALV 415
DLI LL KDP++R+ +R G++++K H FF G+ W +
Sbjct: 241 DLILRLLEKDPRRRLGSRNGSSDVKDHGFFAGLRWDFI 354
>gb|DR684550.1|DR684550 EST1074627 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAU02 3' end, mRNA sequence
Length = 855
Score = 99.1 bits (210), Expect(2) = 2e-023
Identities = 39/80 (48%), Positives = 54/80 (67%)
Frame = +2 / +3
Query: 8 DSSIKDGSLQLEFNAEPTDARSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLH 187
DS+ L+ + + +S SFVGT EY+APEI+ G+GHG AVDWW FGI LYE+++
Sbjct: 456 DSARDTSFCNLDGSKDSVHEQSHSFVGTEEYVAPEILWGKGHGVAVDWWAFGILLYEMVY 635
Query: 188 GTTPFKGDSNRATLCNVVDQ 247
G TPFKG + + T N++ Q
Sbjct: 636 GKTPFKGCTRKETFYNIMCQ 695
Score = 29.5 bits (58), Expect(2) = 2e-023
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2 / +3
Query: 287 STVARDLIRGLLVKDPQKRIATRRGA 364
S+ +DL+R LLVK+P R+ GA
Sbjct: 720 SSPLKDLLRALLVKEPTLRLGFNSGA 797
>gb|DR058708.1|DR058708 RTNIT1_13_A02.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_13_A02_A029 5', mRNA sequence
Length = 596
Score = 76.7 bits (161), Expect(2) = 8e-023
Identities = 27/46 (58%), Positives = 33/46 (71%)
Frame = +2 / -1
Query: 89 THEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNRAT 226
T EY+APEIV G GH + DWW+ GI LYE+L+G TPF+G R T
Sbjct: 596 TEEYVAPEIVSGSGHEFSADWWSLGILLYEMLYGKTPFRGSDKRET 459
Score = 50.1 bits (103), Expect(2) = 8e-023
Identities = 17/38 (44%), Positives = 27/38 (71%)
Frame = +2 / -1
Query: 302 DLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALV 415
DLI LL KDP++R+ +R G++++K H FF G+ W +
Sbjct: 401 DLILRLLEKDPRRRLGSRNGSSDVKDHGFFAGLRWDFI 288
>gb|AW011438.1|AW011438 ST20G06 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST20G06, mRNA sequence
Length = 601
Score = 70.7 bits (148), Expect(2) = 5e-022
Identities = 24/52 (46%), Positives = 35/52 (67%)
Frame = +2 / +3
Query: 86 GTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNRATLCNVV 241
GT Y+APE++ GH VDWW+ GI +YE+ +G TPF+G S + T N++
Sbjct: 6 GTVXYIAPEVLWCTGHSFPVDWWSLGILMYEMKYGKTPFRGSSRKETFFNIM 161
Score = 53.3 bits (110), Expect(2) = 5e-022
Identities = 19/36 (52%), Positives = 25/36 (69%)
Frame = +2 / +3
Query: 299 RDLIRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNW 406
+DLI+ LLVKDP KR+ GA ++K H FF G+ W
Sbjct: 201 KDLIKKLLVKDPSKRLGFSMGATDVKNHSFFHGLRW 308
>gb|CO196899.1|CO196899 GEO1_2_A08.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_2_A08_A029 5', mRNA sequence
Length = 730
Score = 91.3 bits (193), Expect(2) = 6e-021
Identities = 34/71 (47%), Positives = 48/71 (67%)
Frame = +2 / +3
Query: 68 RSTSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLHGTTPFKGDSNRATLCNVVDQ 247
RS S VGT EY+APE+++G GH AVDWW G+ LYE+L+G TPFKG + + T N++ +
Sbjct: 372 RSYSLVGTEEYVAPEMLKGMGHDFAVDWWALGVLLYEMLYGKTPFKGATRKETFYNILMK 551
Query: 248 PLRFPDATPPV 280
+F P+
Sbjct: 552 QPQFSGPWTPL 584
Score = 29.0 bits (57), Expect(2) = 6e-021
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2 / +3
Query: 308 IRGLLVKDPQKRIATRRGAAEIKQHPFFDGVNWALVR 418
+R L+++ +K + R IK H FF +NW ++
Sbjct: 582 LRDLIIRLLEKEPSKRPSVDGIKNHSFFKELNWDTIQ 692
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 305,419,470
Number of Sequences: 355925
Number of extensions: 4393953
Number of successful extensions: 49641
Number of sequences better than 1.0e-020: 33
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 8520950490
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)