TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3802264.2.1
(1189 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|U76756.1|PRU76756 Pinus radiata endo-beta-1,4-glucanase ... 136 7e-061
gb|U76725.1|PRU76725 Pinus radiata endo-beta-1,4-glucanase ... 136 3e-058
gb|CO363825.1|CO363825 RTK1_12_B11.b1_A029 Roots minus pota... 137 1e-057
gb|CO172882.1|CO172882 NDL1_32_B09.g1_A029 Needles control ... 137 3e-050
gb|CF668810.1|CF668810 RTCNT1_38_G04.g1_A029 Root control P... 137 9e-048
gb|DR014982.1|DR014982 HEAT1_52_F11.g1_A029 Root at 37 C fo... 135 6e-047
gb|DR020177.1|DR020177 STRS1_35_D09.b1_A034 Shoot tip pitch... 137 5e-045
gb|DR019067.1|DR019067 STRS1_27_D02.g1_A034 Shoot tip pitch... 137 5e-045
gb|DR019056.1|DR019056 STRS1_27_C02.g1_A034 Shoot tip pitch... 137 5e-045
gb|DR072072.1|DR072072 RTDK1_23_H10.g1_A029 Roots, dark Pin... 137 5e-045
gb|DR013159.1|DR013159 HEAT1_17_H11.b1_A029 Root at 37 C fo... 144 1e-044
gb|DR100137.1|DR100137 STRR1_62_B04.b1_A033 Stem Response R... 136 2e-044
gb|DR179224.1|DR179224 RTMNUT1_16_F11.g1_A029 Roots minus m... 144 2e-044
gb|DR179146.1|DR179146 RTMNUT1_16_F11.b1_A029 Roots minus m... 137 2e-042
gb|CO368436.1|CO368436 RTK1_40_D07.g1_A029 Roots minus pota... 106 2e-042
gb|BF516953.1|BF516953 NXSI_007_C11_F NXSI (Nsf Xylem Side ... 134 7e-042
gb|CO173387.1|CO173387 NDL1_35_G08.g1_A029 Needles control ... 126 1e-040
gb|DR057721.1|DR057721 RTNIT1_7_A06.g1_A029 Roots minus nit... 111 2e-039
gb|DR099637.1|DR099637 STRR1_57_B05.b1_A033 Stem Response R... 137 4e-039
gb|CO365142.1|CO365142 RTK1_23_H06.g1_A029 Roots minus pota... 108 1e-038
gb|DR161544.1|DR161544 RTFE1_12_A09.g1_A029 Roots minus iro... 108 1e-038
gb|DT631580.1|DT631580 EST1146511 Normalized pine embryo li... 103 2e-037
gb|DR683696.1|DR683696 EST1073772 Normalized pine embryo li... 103 2e-037
gb|DR695212.1|DR695212 EST1085305 Normalized pine embryo li... 100 8e-037
gb|CO365053.1|CO365053 RTK1_23_H06.b1_A029 Roots minus pota... 99 6e-036
gb|DR167697.1|DR167697 RTPHOS1_20_B02.g1_A029 Roots minus p... 99 6e-036
gb|CO363908.1|CO363908 RTK1_12_B11.g1_A029 Roots minus pota... 99 6e-036
gb|DR101611.1|DR101611 STRR1_74_C04.g1_A033 Stem Response R... 99 6e-036
gb|DR018974.1|DR018974 STRS1_27_C02.b1_A034 Shoot tip pitch... 97 2e-035
gb|DR018984.1|DR018984 STRS1_27_D02.b1_A034 Shoot tip pitch... 97 2e-035
gb|BQ701766.1|BQ701766 NXSI_120_D02_F NXSI (Nsf Xylem Side ... 104 2e-035
gb|DR163085.1|DR163085 RTFE1_24_H02.g1_A029 Roots minus iro... 104 1e-034
gb|DR683407.1|DR683407 EST1073483 Normalized pine embryo li... 94 2e-034
gb|DR072431.1|DR072431 RTDK1_26_F03.b1_A029 Roots, dark Pin... 132 1e-033
gb|BG040101.1|BG040101 NXSI_106_E02_F NXSI (Nsf Xylem Side ... 134 6e-033
gb|DR099221.1|DR099221 STRR1_54_B05.b1_A033 Stem Response R... 95 8e-033
gb|DT636766.1|DT636766 EST1151697 Normalized pine embryo li... 102 7e-032
gb|DR691236.1|DR691236 EST1081322 Normalized pine embryo li... 100 2e-031
gb|CO176214.1|CO176214 NDL1_60_C02.g1_A029 Needles control ... 135 5e-031
gb|CV035007.1|CV035007 RTNACL1_13_B12.b1_A029 Roots plus ad... 81 2e-030
gb|DR020253.1|DR020253 STRS1_35_D09.g1_A034 Shoot tip pitch... 81 2e-030
gb|DR072510.1|DR072510 RTDK1_26_F03.g1_A029 Roots, dark Pin... 90 2e-030
gb|DR167591.1|DR167591 RTPHOS1_19_F11.g1_A029 Roots minus p... 66 9e-030
gb|DR070111.1|DR070111 RTDK1_11_G12.b1_A029 Roots, dark Pin... 96 6e-029
gb|DR161469.1|DR161469 RTFE1_12_A09.b1_A029 Roots minus iro... 74 1e-028
gb|CF663920.1|CF663920 RTCNT1_6_B08.b1_A029 Root control Pi... 74 1e-028
gb|DR167624.1|DR167624 RTPHOS1_20_B02.b1_A029 Roots minus p... 74 1e-028
gb|DR070193.1|DR070193 RTDK1_11_G12.g1_A029 Roots, dark Pin... 74 1e-028
gb|CX715048.1|CX715048 RTPQ1_30_B02.g1_A032 Roots treated w... 118 3e-028
gb|CO370530.1|CO370530 RTK1_68_B06.g1_A029 Roots minus pota... 74 6e-028
gb|DR167508.1|DR167508 RTPHOS1_19_F11.b1_A029 Roots minus p... 66 3e-027
gb|CO198819.1|CO198819 GEO1_16_G05.g1_A029 Root gravitropis... 73 4e-025
gb|CF672997.1|CF672997 RTCNT1_75_H01.b1_A029 Root control P... 73 6e-025
gb|CF479673.1|CF479673 RTWW3_11_E04.g1_A022 Well-watered lo... 68 1e-024
gb|BQ699374.1|BQ699374 NXRV126_H08_F NXRV (Nsf Xylem Root w... 64 2e-024
gb|AA220893.1|AA220893 8 Pinus radiata somatic embryogenic ... 73 2e-024
gb|BX255589.1|BX255589 BX255589 Pinus pinaster differenciat... 66 2e-024
gb|BX680640.1|BX680640 BX680640 RS Pinus pinaster cDNA clon... 66 2e-024
gb|DR096991.1|DR096991 STRR1_31_E11.g1_A033 Stem Response R... 65 6e-024
gb|DR078499.1|DR078499 RTFEPL1_5_C10.b1_A029 Roots plus add... 65 6e-024
gb|CX652902.1|CX652902 COLD1_62_E09.b1_A029 Root cold Pinus... 65 6e-024
gb|BF060615.1|BF060615 NXCI_118_B03_F NXCI (Nsf Xylem Compr... 71 6e-024
gb|CO368326.1|CO368326 RTK1_40_A07.b1_A029 Roots minus pota... 69 3e-023
gb|BX678371.1|BX678371 BX678371 RS Pinus pinaster cDNA clon... 65 4e-023
gb|CO169692.1|CO169692 NDL1_9_A02.b1_A029 Needles control P... 69 9e-023
gb|BQ198340.1|BQ198340 NXLV127_E03_F NXLV (Nsf Xylem Late w... 80 9e-023
gb|BF220811.1|BF220811 NXCI_154_B06_F NXCI (Nsf Xylem Compr... 100 1e-022
gb|CF479877.1|CF479877 RTWW3_12_D09.g1_A022 Well-watered lo... 65 3e-022
gb|DR095654.1|DR095654 STRR1_22_E06.g1_A033 Stem Response R... 68 1e-021
gb|DR744307.1|DR744307 RTCU1_21_D02.g1_A029 Roots plus adde... 65 2e-021
gb|DR169132.1|DR169132 RTPHOS1_30_F09.b1_A029 Roots minus p... 65 2e-021
gb|BG625807.1|BG625807 NXPV_066_C10_F NXPV (Nsf Xylem Plani... 65 2e-021
gb|BQ698529.1|BQ698529 NXPV_071_A11_F NXPV (Nsf Xylem Plani... 65 2e-021
>gb|U76756.1|PRU76756 Pinus radiata endo-beta-1,4-glucanase (PrCel2) mRNA, complete cds
Length = 1950
Score = 136 bits (291), Expect(5) = 7e-061
Identities = 56/130 (43%), Positives = 79/130 (60%)
Frame = +1 / +3
Query: 307 VLLAEFNMTSAGGAQNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTA 486
+L E + ++ + ++ ADNFVC++LP T Q TPGG+++ N QYVTST
Sbjct: 969 LLAKEVLLRNSKSLEEYRGHADNFVCSLLPGTPNSQAQYTPGGLLYKMSDCNLQYVTSTT 1148
Query: 487 FLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPT 666
FLL Y L + Q V CGN + P R+ A++Q+DY+LG NP SY+VG+GA P
Sbjct: 1149 FLLFTYPKYLRVSKQVVRCGNMVVTPTRIRTLAKRQVDYILGDNPLRMSYMVGYGAKFPE 1328
Query: 667 QPHHRGASTP 696
+ HHRG+S P
Sbjct: 1329 RIHHRGSSLP 1358
Score = 73.0 bits (153), Expect(5) = 7e-061
Identities = 28/48 (58%), Positives = 36/48 (75%)
Frame = +1 / +3
Query: 763 PNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALA 906
PNPN L GA+VGGPD ND F D+R + +++EP TYIN+ +G LA LA
Sbjct: 1425 PNPNRLVGAVVGGPDNNDHFSDERNDYAHSEPTTYINAPLVGSLAYLA 1568
Score = 42.8 bits (87), Expect(5) = 7e-061
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = +1 / +3
Query: 139 CPFYCSYSGYNDEXXXXXXXXXXXXRRQVYADFI 240
CPFYCSYSGYNDE R Y +I
Sbjct: 786 CPFYCSYSGYNDELLWGAAWLQRASRNVSYISYI 887
Score = 30.4 bits (60), Expect(5) = 7e-061
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1 / +3
Query: 52 DKKYSRKLLNKAKLLFTFAKSHLGSY 129
D YSR LL A +F FA H G+Y
Sbjct: 684 DPIYSRHLLQTAMQVFDFADKHRGAY 761
Score = 27.6 bits (54), Expect(5) = 7e-061
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1 / +3
Query: 274 FSWDLKFPGAQVLLAE 321
FSWD K GA+VLLA+
Sbjct: 933 FSWDDKHAGARVLLAK 980
>gb|U76725.1|PRU76725 Pinus radiata endo-beta-1,4-glucanase (PrCel1) mRNA, complete cds
Length = 1928
Score = 136 bits (292), Expect(5) = 3e-058
Identities = 53/130 (40%), Positives = 82/130 (63%)
Frame = +1 / +2
Query: 307 VLLAEFNMTSAGGAQNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTA 486
+L EF + + ++K ADN++C++LP ++ Q TPGG+++ +N QYVTS++
Sbjct: 968 LLSKEFLLRNVKSLHDYKGHADNYICSLLPGVSYSQAKYTPGGLLYTLSDSNLQYVTSSS 1147
Query: 487 FLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPT 666
FLL YA L + V CG+ P RL A++Q+DY+LG NP SY+VG+G++ P
Sbjct: 1148 FLLFTYAKYLSSSKHVVTCGSMTFSPKRLRTIAKRQVDYILGDNPLKMSYMVGYGSHYPE 1327
Query: 667 QPHHRGASTP 696
+ HHRG+S P
Sbjct: 1328 RIHHRGSSLP 1357
Score = 64.8 bits (135), Expect(5) = 3e-058
Identities = 27/48 (56%), Positives = 32/48 (66%)
Frame = +1 / +2
Query: 763 PNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALA 906
PNPN L GA+VGGPD D F D R + +EP TYIN+ +G LA LA
Sbjct: 1424 PNPNILVGAVVGGPDSMDRFPDDRNDYEQSEPTTYINAPFVGSLAYLA 1567
Score = 42.3 bits (86), Expect(5) = 3e-058
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +1 / +2
Query: 139 CPFYCSYSGYNDEXXXXXXXXXXXXRRQVYADFIAHEAISSSVAE 273
CPFYCSYSGY DE R Y ++I + S E
Sbjct: 785 CPFYCSYSGYEDELLWGAAWLHKATRNPTYLNYIQSKGQSLGADE 919
Score = 32.7 bits (65), Expect(5) = 3e-058
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1 / +2
Query: 46 RDDKKYSRKLLNKAKLLFTFAKSHLGSY 129
+ D +YS++L++ A +F FA H G+Y
Sbjct: 677 KSDPQYSKRLIHTAMRVFDFADKHRGAY 760
Score = 24.9 bits (48), Expect(5) = 3e-058
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1 / +2
Query: 274 FSWDLKFPGAQVLLAE 321
F WD K GA+VLL++
Sbjct: 932 FGWDNKHAGARVLLSK 979
>gb|CO363825.1|CO363825 RTK1_12_B11.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_12_B11_A029 3', mRNA sequence
Length = 860
Score = 137 bits (294), Expect(4) = 1e-057
Identities = 57/130 (43%), Positives = 80/130 (61%)
Frame = +1 / -1
Query: 307 VLLAEFNMTSAGGAQNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTA 486
+L E + ++ + ++ ADNFVC++LP T Q TPGG+++ N QYVTST
Sbjct: 626 LLAKEVLLRNSKSLEEYRGHADNFVCSLLPGTPNSQAQYTPGGLLYKMSDCNLQYVTSTT 447
Query: 487 FLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPT 666
FLL YA L + Q V CGN + P R+ A++Q+DY+LG NP SY+VG+GA P
Sbjct: 446 FLLFTYAKYLRVSKQVVRCGNMVVTPTRIRTLAKRQVDYILGDNPLGMSYMVGYGAKFPE 267
Query: 667 QPHHRGASTP 696
+ HHRG+S P
Sbjct: 266 RIHHRGSSLP 237
Score = 73.0 bits (153), Expect(4) = 1e-057
Identities = 28/48 (58%), Positives = 36/48 (75%)
Frame = +1 / -1
Query: 763 PNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALA 906
PNPN L GA+VGGPD ND F D+R + +++EP TYIN+ +G LA LA
Sbjct: 170 PNPNRLVGAVVGGPDNNDHFSDERNDYAHSEPTTYINAPLVGSLAYLA 27
Score = 42.8 bits (87), Expect(4) = 1e-057
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = +1 / -1
Query: 139 CPFYCSYSGYNDEXXXXXXXXXXXXRRQVYADFI 240
CPFYCSYSGYNDE R Y +I
Sbjct: 809 CPFYCSYSGYNDELLWGAAWLQRASRNVSYISYI 708
Score = 27.6 bits (54), Expect(4) = 1e-057
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1 / -1
Query: 274 FSWDLKFPGAQVLLAE 321
FSWD K GA+VLLA+
Sbjct: 662 FSWDDKHAGARVLLAK 615
>gb|CO172882.1|CO172882 NDL1_32_B09.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_32_B09_A029 5', mRNA sequence
Length = 815
Score = 137 bits (294), Expect(3) = 3e-050
Identities = 57/130 (43%), Positives = 80/130 (61%)
Frame = +1 / +1
Query: 307 VLLAEFNMTSAGGAQNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTA 486
+L E + ++ + ++ ADNFVC++LP T Q TPGG+++ N QYVTST
Sbjct: 76 LLAKEVLLRNSKSLEEYRGHADNFVCSLLPGTPNSQAQYTPGGLLYKMSDCNLQYVTSTT 255
Query: 487 FLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPT 666
FLL YA L + Q V CGN + P R+ A++Q+DY+LG NP SY+VG+GA P
Sbjct: 256 FLLFTYAKYLRVSKQVVRCGNMVVTPTRIRTLAKRQVDYILGDNPLGMSYMVGYGAKFPE 435
Query: 667 QPHHRGASTP 696
+ HHRG+S P
Sbjct: 436 RIHHRGSSLP 465
Score = 73.0 bits (153), Expect(3) = 3e-050
Identities = 28/48 (58%), Positives = 36/48 (75%)
Frame = +1 / +1
Query: 763 PNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALA 906
PNPN L GA+VGGPD ND F D+R + +++EP TYIN+ +G LA LA
Sbjct: 532 PNPNRLVGAVVGGPDNNDHFSDERNDYAHSEPTTYINAPLVGSLAYLA 675
Score = 27.6 bits (54), Expect(3) = 3e-050
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1 / +1
Query: 274 FSWDLKFPGAQVLLAE 321
FSWD K GA+VLLA+
Sbjct: 40 FSWDDKHAGARVLLAK 87
>gb|CF668810.1|CF668810 RTCNT1_38_G04.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_38_G04_A029 5', mRNA sequence
Length = 699
Score = 137 bits (294), Expect(3) = 9e-048
Identities = 57/130 (43%), Positives = 80/130 (61%)
Frame = +1 / +1
Query: 307 VLLAEFNMTSAGGAQNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTA 486
+L E + ++ + ++ ADNFVC++LP T Q TPGG+++ N QYVTST
Sbjct: 127 LLAKEVLLRNSKSLEEYRGHADNFVCSLLPGTPNSQAQYTPGGLLYKMSDCNLQYVTSTT 306
Query: 487 FLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPT 666
FLL YA L + Q V CGN + P R+ A++Q+DY+LG NP SY+VG+GA P
Sbjct: 307 FLLFTYAKYLRVSKQVVRCGNMVVTPTRIRTLAKRQVDYILGDNPLGMSYMVGYGAKFPE 486
Query: 667 QPHHRGASTP 696
+ HHRG+S P
Sbjct: 487 RIHHRGSSLP 516
Score = 64.8 bits (135), Expect(3) = 9e-048
Identities = 23/38 (60%), Positives = 30/38 (78%)
Frame = +1 / +1
Query: 763 PNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINS 876
PNPN L GA+VGGPD ND F D+R + +++EP TYIN+
Sbjct: 583 PNPNRLVGAVVGGPDNNDHFSDERNDYAHSEPTTYINA 696
Score = 27.6 bits (54), Expect(3) = 9e-048
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1 / +1
Query: 274 FSWDLKFPGAQVLLAE 321
FSWD K GA+VLLA+
Sbjct: 91 FSWDDKHAGARVLLAK 138
>gb|DR014982.1|DR014982 HEAT1_52_F11.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_52_F11_A029 5', mRNA sequence
Length = 877
Score = 135 bits (290), Expect(2) = 6e-047
Identities = 55/116 (47%), Positives = 74/116 (63%)
Frame = +1 / -2
Query: 349 QNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTAFLLVVYADLLLRTG 528
+ ++ ADNFVC++LP T Q TPGG+++ N QYVTST FLL YA L +
Sbjct: 864 EEYRGHADNFVCSLLPGTPNSQAQYTPGGLLYKMSDCNLQYVTSTTFLLFTYAKYLRVSK 685
Query: 529 QTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
Q V CGN + P R+ A++Q+DY+LG NP SY+VG+GA P + HHRG+S P
Sbjct: 684 QVVRCGNMVVTPTRIRTLAKRQVDYILGDNPLGMSYMVGYGAKFPERIHHRGSSLP 517
Score = 73.0 bits (153), Expect(2) = 6e-047
Identities = 28/48 (58%), Positives = 36/48 (75%)
Frame = +1 / -2
Query: 763 PNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALA 906
PNPN L GA+VGGPD ND F D+R + +++EP TYIN+ +G LA LA
Sbjct: 450 PNPNRLVGAVVGGPDNNDHFSDERNDYAHSEPTTYINAPLVGSLAYLA 307
>gb|DR020177.1|DR020177 STRS1_35_D09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_35_D09_A034 3', mRNA sequence
Length = 906
Score = 137 bits (294), Expect(4) = 5e-045
Identities = 57/130 (43%), Positives = 80/130 (61%)
Frame = +1 / -1
Query: 307 VLLAEFNMTSAGGAQNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTA 486
+L E + ++ + ++ ADNFVC++LP T Q TPGG+++ N QYVTST
Sbjct: 468 LLAKEVLLRNSKSLEEYRGHADNFVCSLLPGTPNSQAQYTPGGLLYKMSDCNLQYVTSTT 289
Query: 487 FLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPT 666
FLL YA L + Q V CGN + P R+ A++Q+DY+LG NP SY+VG+GA P
Sbjct: 288 FLLFTYAKYLRVSKQVVRCGNMVVTPTRIRTLAKRQVDYILGDNPLGMSYMVGYGAKFPE 109
Query: 667 QPHHRGASTP 696
+ HHRG+S P
Sbjct: 108 RIHHRGSSLP 79
Score = 42.8 bits (87), Expect(4) = 5e-045
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = +1 / -1
Query: 139 CPFYCSYSGYNDEXXXXXXXXXXXXRRQVYADFI 240
CPFYCSYSGYNDE R Y +I
Sbjct: 651 CPFYCSYSGYNDELLWGAAWLQRASRNVSYISYI 550
Score = 30.4 bits (60), Expect(4) = 5e-045
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1 / -1
Query: 52 DKKYSRKLLNKAKLLFTFAKSHLGSY 129
D YSR LL A +F FA H G+Y
Sbjct: 753 DPIYSRHLLQTAMQVFDFADKHRGAY 676
Score = 27.6 bits (54), Expect(4) = 5e-045
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1 / -1
Query: 274 FSWDLKFPGAQVLLAE 321
FSWD K GA+VLLA+
Sbjct: 504 FSWDDKHAGARVLLAK 457
>gb|DR019067.1|DR019067 STRS1_27_D02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_27_D02_A034 5', mRNA sequence
Length = 845
Score = 137 bits (294), Expect(4) = 5e-045
Identities = 57/130 (43%), Positives = 80/130 (61%)
Frame = +1 / +1
Query: 307 VLLAEFNMTSAGGAQNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTA 486
+L E + ++ + ++ ADNFVC++LP T Q TPGG+++ N QYVTST
Sbjct: 388 LLAKEVLLRNSKSLEEYRGHADNFVCSLLPGTPNSQAQYTPGGLLYKMSDCNLQYVTSTT 567
Query: 487 FLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPT 666
FLL YA L + Q V CGN + P R+ A++Q+DY+LG NP SY+VG+GA P
Sbjct: 568 FLLFTYAKYLRVSKQVVRCGNMVVTPTRIRTLAKRQVDYILGDNPLGMSYMVGYGAKFPE 747
Query: 667 QPHHRGASTP 696
+ HHRG+S P
Sbjct: 748 RIHHRGSSLP 777
Score = 42.8 bits (87), Expect(4) = 5e-045
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = +1 / +1
Query: 139 CPFYCSYSGYNDEXXXXXXXXXXXXRRQVYADFI 240
CPFYCSYSGYNDE R Y +I
Sbjct: 205 CPFYCSYSGYNDELLWGAAWLQRASRNVSYISYI 306
Score = 30.4 bits (60), Expect(4) = 5e-045
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1 / +1
Query: 52 DKKYSRKLLNKAKLLFTFAKSHLGSY 129
D YSR LL A +F FA H G+Y
Sbjct: 103 DPIYSRHLLQTAMQVFDFADKHRGAY 180
Score = 27.6 bits (54), Expect(4) = 5e-045
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1 / +1
Query: 274 FSWDLKFPGAQVLLAE 321
FSWD K GA+VLLA+
Sbjct: 352 FSWDDKHAGARVLLAK 399
>gb|DR019056.1|DR019056 STRS1_27_C02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_27_C02_A034 5', mRNA sequence
Length = 823
Score = 137 bits (294), Expect(4) = 5e-045
Identities = 57/130 (43%), Positives = 80/130 (61%)
Frame = +1 / +3
Query: 307 VLLAEFNMTSAGGAQNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTA 486
+L E + ++ + ++ ADNFVC++LP T Q TPGG+++ N QYVTST
Sbjct: 387 LLAKEVLLRNSKSLEEYRGHADNFVCSLLPGTPNSQAQYTPGGLLYKMSDCNLQYVTSTT 566
Query: 487 FLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPT 666
FLL YA L + Q V CGN + P R+ A++Q+DY+LG NP SY+VG+GA P
Sbjct: 567 FLLFTYAKYLRVSKQVVRCGNMVVTPTRIRTLAKRQVDYILGDNPLGMSYMVGYGAKFPE 746
Query: 667 QPHHRGASTP 696
+ HHRG+S P
Sbjct: 747 RIHHRGSSLP 776
Score = 42.8 bits (87), Expect(4) = 5e-045
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = +1 / +3
Query: 139 CPFYCSYSGYNDEXXXXXXXXXXXXRRQVYADFI 240
CPFYCSYSGYNDE R Y +I
Sbjct: 204 CPFYCSYSGYNDELLWGAAWLQRASRNVSYISYI 305
Score = 30.4 bits (60), Expect(4) = 5e-045
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1 / +3
Query: 52 DKKYSRKLLNKAKLLFTFAKSHLGSY 129
D YSR LL A +F FA H G+Y
Sbjct: 102 DPIYSRHLLQTAMQVFDFADKHRGAY 179
Score = 27.6 bits (54), Expect(4) = 5e-045
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1 / +3
Query: 274 FSWDLKFPGAQVLLAE 321
FSWD K GA+VLLA+
Sbjct: 351 FSWDDKHAGARVLLAK 398
>gb|DR072072.1|DR072072 RTDK1_23_H10.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_23_H10_A029 5', mRNA sequence
Length = 689
Score = 137 bits (294), Expect(4) = 5e-045
Identities = 57/130 (43%), Positives = 80/130 (61%)
Frame = +1 / +3
Query: 307 VLLAEFNMTSAGGAQNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTA 486
+L E + ++ + ++ ADNFVC++LP T Q TPGG+++ N QYVTST
Sbjct: 288 LLAKEVLLRNSKSLEEYRGHADNFVCSLLPGTPNSQAQYTPGGLLYKMSDCNLQYVTSTT 467
Query: 487 FLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPT 666
FLL YA L + Q V CGN + P R+ A++Q+DY+LG NP SY+VG+GA P
Sbjct: 468 FLLFTYAKYLRVSKQVVRCGNMVVTPTRIRTLAKRQVDYILGDNPLGMSYMVGYGAKFPE 647
Query: 667 QPHHRGASTP 696
+ HHRG+S P
Sbjct: 648 RIHHRGSSLP 677
Score = 42.8 bits (87), Expect(4) = 5e-045
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = +1 / +3
Query: 139 CPFYCSYSGYNDEXXXXXXXXXXXXRRQVYADFI 240
CPFYCSYSGYNDE R Y +I
Sbjct: 105 CPFYCSYSGYNDELLWGAAWLQRASRNVSYISYI 206
Score = 30.4 bits (60), Expect(4) = 5e-045
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1 / +3
Query: 52 DKKYSRKLLNKAKLLFTFAKSHLGSY 129
D YSR LL A +F FA H G+Y
Sbjct: 3 DPIYSRHLLQTAMQVFDFADKHRGAY 80
Score = 27.6 bits (54), Expect(4) = 5e-045
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1 / +3
Query: 274 FSWDLKFPGAQVLLAE 321
FSWD K GA+VLLA+
Sbjct: 252 FSWDDKHAGARVLLAK 299
>gb|DR013159.1|DR013159 HEAT1_17_H11.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_17_H11_A029 3', mRNA sequence
Length = 827
Score = 144 bits (309), Expect(2) = 1e-044
Identities = 58/128 (45%), Positives = 84/128 (65%)
Frame = +1 / -3
Query: 313 LAEFNMTSAGGAQNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTAFL 492
+ EF + G Q +K ADNF+C++LP+T + V TPGG+I+ G+N Q+VT+ +FL
Sbjct: 804 IQEFLLGKVGFLQTYKGHADNFICSLLPETPYRHVAHTPGGLIYKPGGSNMQHVTAISFL 625
Query: 493 LVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQP 672
L+ YA+ L + Q V CG+ + PARL A+ Q+DY+LG NP SY+VG+G+ P
Sbjct: 624 LLAYANYLGHSSQVVHCGSIAVTPARLRAVAKSQVDYILGDNPMKLSYMVGYGSGFPKYI 445
Query: 673 HHRGASTP 696
HHRG+S P
Sbjct: 444 HHRGSSLP 421
Score = 56.5 bits (117), Expect(2) = 1e-044
Identities = 23/45 (51%), Positives = 29/45 (64%)
Frame = +1 / -3
Query: 763 PNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLA 897
PNPN L GA+VGGP+ D + D R +EP TYIN+ +G LA
Sbjct: 354 PNPNLLVGAVVGGPNTRDQYSDARTYFRQSEPTTYINAPLVGALA 220
>gb|DR100137.1|DR100137 STRR1_62_B04.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_62_B04_A033 3', mRNA sequence
Length = 790
Score = 136 bits (292), Expect(4) = 2e-044
Identities = 53/130 (40%), Positives = 82/130 (63%)
Frame = +1 / -1
Query: 307 VLLAEFNMTSAGGAQNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTA 486
+L EF + + ++K ADN++C++LP ++ Q TPGG+++ +N QYVTS++
Sbjct: 445 LLSKEFLLRNVKSLHDYKGHADNYICSLLPGVSYSQAKYTPGGLLYTLSDSNLQYVTSSS 266
Query: 487 FLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPT 666
FLL YA L + V CG+ P RL A++Q+DY+LG NP SY+VG+G++ P
Sbjct: 265 FLLFTYAKYLSSSKHVVTCGSMTFSPKRLRTIAKRQVDYILGDNPLKMSYMVGYGSHYPE 86
Query: 667 QPHHRGASTP 696
+ HHRG+S P
Sbjct: 85 RIHHRGSSLP 56
Score = 42.3 bits (86), Expect(4) = 2e-044
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +1 / -1
Query: 139 CPFYCSYSGYNDEXXXXXXXXXXXXRRQVYADFIAHEAISSSVAE 273
CPFYCSYSGY DE R Y ++I + S E
Sbjct: 628 CPFYCSYSGYEDELLWGAAWLHKATRNPTYLNYIQSKGQSLGADE 494
Score = 32.7 bits (65), Expect(4) = 2e-044
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1 / -1
Query: 46 RDDKKYSRKLLNKAKLLFTFAKSHLGSY 129
+ D +YS++L++ A +F FA H G+Y
Sbjct: 736 KSDPQYSKRLIHTAMRVFDFADKHRGAY 653
Score = 24.9 bits (48), Expect(4) = 2e-044
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1 / -1
Query: 274 FSWDLKFPGAQVLLAE 321
F WD K GA+VLL++
Sbjct: 481 FGWDNKHAGARVLLSK 434
>gb|DR179224.1|DR179224 RTMNUT1_16_F11.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_16_F11_A029 5', mRNA sequence
Length = 846
Score = 144 bits (308), Expect(2) = 2e-044
Identities = 58/126 (46%), Positives = 83/126 (65%)
Frame = +1 / +1
Query: 319 EFNMTSAGGAQNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTAFLLV 498
EF + G Q +K ADNF+C++LP+T + V TPGG+I+ G+N Q+VT+ +FLL+
Sbjct: 52 EFLLGKVGFLQTYKGHADNFICSLLPETPYRHVAHTPGGLIYKPGGSNMQHVTAISFLLL 231
Query: 499 VYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHH 678
YA+ L + Q V CG+ + PARL A+ Q+DY+LG NP SY+VG+G+ P HH
Sbjct: 232 AYANYLGHSSQVVHCGSIAVTPARLRAVAKSQVDYILGDNPMKLSYMVGYGSGFPKYIHH 411
Query: 679 RGASTP 696
RG+S P
Sbjct: 412 RGSSLP 429
Score = 56.5 bits (117), Expect(2) = 2e-044
Identities = 23/45 (51%), Positives = 29/45 (64%)
Frame = +1 / +1
Query: 763 PNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLA 897
PNPN L GA+VGGP+ D + D R +EP TYIN+ +G LA
Sbjct: 496 PNPNLLVGAVVGGPNTRDQYSDARTYFRQSEPTTYINAPLVGALA 630
>gb|DR179146.1|DR179146 RTMNUT1_16_F11.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_16_F11_A029 3', mRNA sequence
Length = 884
Score = 137 bits (293), Expect(2) = 2e-042
Identities = 54/114 (47%), Positives = 78/114 (68%)
Frame = +1 / +2
Query: 355 FKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTAFLLVVYADLLLRTGQT 534
+K ADNF+C++LP+T + V TPGG+I+ G+N Q+VT+ +FLL+ YA+ L + Q
Sbjct: 2 YKGHADNFICSLLPETPYRHVAHTPGGLIYKPGGSNMQHVTAISFLLLAYANYLGHSSQV 181
Query: 535 VLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
V CG+ + PARL A+ Q+DY+LG NP SY+VG+G+ P HHRG+S P
Sbjct: 182 VHCGSIAVTPARLRAVAKSQVDYILGDNPMKLSYMVGYGSGFPKYIHHRGSSLP 343
Score = 56.5 bits (117), Expect(2) = 2e-042
Identities = 23/45 (51%), Positives = 29/45 (64%)
Frame = +1 / +2
Query: 763 PNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLA 897
PNPN L GA+VGGP+ D + D R +EP TYIN+ +G LA
Sbjct: 410 PNPNLLVGAVVGGPNTRDQYSDARTYFRQSEPTTYINAPLVGALA 544
>gb|CO368436.1|CO368436 RTK1_40_D07.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_40_D07_A029 5', mRNA sequence
Length = 815
Score = 106 bits (227), Expect(3) = 2e-042
Identities = 44/90 (48%), Positives = 61/90 (67%)
Frame = +1 / +1
Query: 421 ITPGGVIHLRDGANSQYVTSTAFLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMD 600
+TPGG+ ++R+ N QYV+S +FLL VY+D L Q + C + P+ L + A+ Q+D
Sbjct: 241 LTPGGLFYIREWNNMQYVSSASFLLTVYSDYLTAAKQQLKCPTGLVEPSELLKLAQFQVD 420
Query: 601 YLLGANPRHSSYVVGFGANPPTQPHHRGAS 690
Y+LGANPR +SY+VGFG Q HHRGAS
Sbjct: 421 YILGANPRATSYLVGFGKTYAQQVHHRGAS 510
Score = 69.3 bits (145), Expect(3) = 2e-042
Identities = 28/60 (46%), Positives = 35/60 (58%)
Frame = +1 / +1
Query: 718 VNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLA 897
+ C + W + + NPN + GA+VGGPDKND F D R N TE CTY + IG LA
Sbjct: 541 IGCIQGYDSWYSRKENNPNVIVGALVGGPDKNDNFEDDRKNYMQTEACTYNTAPLIGILA 720
Score = 35.4 bits (71), Expect(3) = 2e-042
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1 / +1
Query: 262 SVAEFSWDLKFPGAQVLLAEFNMTSAGG 345
++ EFSWD+K+ G QVL A+ M G
Sbjct: 64 AITEFSWDVKYAGLQVLAAKVLMEGKSG 147
>gb|BF516953.1|BF516953 NXSI_007_C11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_007_C11 5' similar to Arabidopsis thaliana
sequence At4g02290 putative endo-1,4-beta glucanase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 566
Score = 134 bits (288), Expect(2) = 7e-042
Identities = 55/114 (48%), Positives = 73/114 (64%)
Frame = +1 / +1
Query: 355 FKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTAFLLVVYADLLLRTGQT 534
++ ADNFVC++LP T Q TPGG+++ N QYVTST FLL YA L + Q
Sbjct: 4 YRGHADNFVCSLLPGTPNSQAQYTPGGLLYKMSDCNLQYVTSTTFLLFTYAKYLRVSKQV 183
Query: 535 VLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
V CGN + P R+ A++Q+DY+LG NP SY+VG+GA P + HHRG+S P
Sbjct: 184 VRCGNMVVTPTRIRTLAKRQVDYILGDNPLGMSYMVGYGAKFPERIHHRGSSLP 345
Score = 57.0 bits (118), Expect(2) = 7e-042
Identities = 24/48 (50%), Positives = 31/48 (64%)
Frame = +1 / +1
Query: 763 PNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALA 906
PNPN L GA+VG D ND F D+R + +++E TYIN+ G A LA
Sbjct: 412 PNPNRLVGAVVGXXDNNDHFSDERNDYAHSEXXTYINAPXXGXXAYLA 555
>gb|CO173387.1|CO173387 NDL1_35_G08.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_35_G08_A029 5', mRNA sequence
Length = 793
Score = 126 bits (269), Expect(4) = 1e-040
Identities = 51/114 (44%), Positives = 71/114 (62%)
Frame = +1 / +2
Query: 355 FKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTAFLLVVYADLLLRTGQT 534
++ ADNF+C++LP T Q TPGG++ +N QYVTS FLL YA L + Q
Sbjct: 347 YRGHADNFICSLLPGTPSSQAQYTPGGLLFQMSDSNLQYVTSATFLLFTYAKYLSVSKQV 526
Query: 535 VLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
V CGN + P ++ A++Q+DY+LG NP SY+VG+ A P + HHRG+S P
Sbjct: 527 VKCGNMIVTPTKIRTSAKRQVDYILGDNPLGMSYMVGYSAKFPERIHHRGSSLP 688
Score = 40.9 bits (83), Expect(4) = 1e-040
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1 / +2
Query: 139 CPFYCSYSGYNDEXXXXXXXXXXXXRRQVYADFI 240
CPFYCSYSGY+DE R Y ++I
Sbjct: 116 CPFYCSYSGYHDELLWGAAWLERASRNVSYLNYI 217
Score = 28.6 bits (56), Expect(4) = 1e-040
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1 / +2
Query: 763 PNPNELTGAIVGG 801
PNPN L GA+VGG
Sbjct: 755 PNPNILVGAVVGG 793
Score = 27.6 bits (54), Expect(4) = 1e-040
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1 / +2
Query: 262 SVAEFSWDLKFPGAQVLLAE 321
SV FSWD K G +VLLA+
Sbjct: 251 SVNIFSWDEKHAGTRVLLAK 310
>gb|DR057721.1|DR057721 RTNIT1_7_A06.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_7_A06_A029 5', mRNA sequence
Length = 903
Score = 111 bits (236), Expect(2) = 2e-039
Identities = 46/95 (48%), Positives = 60/95 (63%)
Frame = +1 / -3
Query: 412 QVFITPGGVIHLRDGANSQYVTSTAFLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQ 591
Q TPGG+++ N QYVTST FLL YA L + Q V CGN + P R+ A++
Sbjct: 886 QAQYTPGGLLYKMSDCNLQYVTSTTFLLFTYAKYLRVSKQVVRCGNMVVTPTRIRTLAKR 707
Query: 592 QMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
Q+DY+LG NP SY+VG+GA P + HHRG+S P
Sbjct: 706 QVDYILGDNPLGMSYMVGYGAKFPERIHHRGSSLP 602
Score = 73.0 bits (153), Expect(2) = 2e-039
Identities = 28/48 (58%), Positives = 36/48 (75%)
Frame = +1 / -3
Query: 763 PNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALA 906
PNPN L GA+VGGPD ND F D+R + +++EP TYIN+ +G LA LA
Sbjct: 535 PNPNRLVGAVVGGPDNNDHFSDERNDYAHSEPTTYINAPLVGSLAYLA 392
>gb|DR099637.1|DR099637 STRR1_57_B05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_57_B05_A033 3', mRNA sequence
Length = 567
Score = 137 bits (294), Expect(2) = 4e-039
Identities = 57/130 (43%), Positives = 80/130 (61%)
Frame = +1 / -2
Query: 307 VLLAEFNMTSAGGAQNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTA 486
+L E + ++ + ++ ADNFVC++LP T Q TPGG+++ N QYVTST
Sbjct: 548 LLAKEVLLRNSKSLEEYRGHADNFVCSLLPGTPNSQAQYTPGGLLYKMSDCNLQYVTSTT 369
Query: 487 FLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPT 666
FLL YA L + Q V CGN + P R+ A++Q+DY+LG NP SY+VG+GA P
Sbjct: 368 FLLFTYAKYLRVSKQVVRCGNMVVTPTRIRTLAKRQVDYILGDNPLGMSYMVGYGAKFPE 189
Query: 667 QPHHRGASTP 696
+ HHRG+S P
Sbjct: 188 RIHHRGSSLP 159
Score = 45.1 bits (92), Expect(2) = 4e-039
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +1 / -2
Query: 763 PNPNELTGAIVGGPDKNDGFVDKRGNSSYT 852
PNPN L GA+VGGP ND F D+R + +++
Sbjct: 92 PNPNRLVGAVVGGPYNNDHFSDERNDYAHS 3
>gb|CO365142.1|CO365142 RTK1_23_H06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_23_H06_A029 5', mRNA sequence
Length = 855
Score = 108 bits (230), Expect(2) = 1e-038
Identities = 44/90 (48%), Positives = 58/90 (64%)
Frame = +1 / +3
Query: 427 PGGVIHLRDGANSQYVTSTAFLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYL 606
PGG+++ N QYVTST FLL YA L + Q V CGN + P R+ A++Q+DY+
Sbjct: 3 PGGLLYKMSDCNLQYVTSTTFLLFTYAKYLRVSKQVVRCGNMVVTPTRIRTLAKRQVDYI 182
Query: 607 LGANPRHSSYVVGFGANPPTQPHHRGASTP 696
LG NP SY+VG+GA P + HHRG+S P
Sbjct: 183 LGDNPLGMSYMVGYGAKFPERIHHRGSSLP 272
Score = 73.0 bits (153), Expect(2) = 1e-038
Identities = 28/48 (58%), Positives = 36/48 (75%)
Frame = +1 / +3
Query: 763 PNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALA 906
PNPN L GA+VGGPD ND F D+R + +++EP TYIN+ +G LA LA
Sbjct: 339 PNPNRLVGAVVGGPDNNDHFSDERNDYAHSEPTTYINAPLVGSLAYLA 482
>gb|DR161544.1|DR161544 RTFE1_12_A09.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_12_A09_A029 5', mRNA sequence
Length = 729
Score = 108 bits (230), Expect(2) = 1e-038
Identities = 44/90 (48%), Positives = 58/90 (64%)
Frame = +1 / +1
Query: 427 PGGVIHLRDGANSQYVTSTAFLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYL 606
PGG+++ N QYVTST FLL YA L + Q V CGN + P R+ A++Q+DY+
Sbjct: 1 PGGLLYKMSDCNLQYVTSTTFLLFTYAKYLRVSKQVVRCGNMVVTPTRIRTLAKRQVDYI 180
Query: 607 LGANPRHSSYVVGFGANPPTQPHHRGASTP 696
LG NP SY+VG+GA P + HHRG+S P
Sbjct: 181 LGDNPLGMSYMVGYGAKFPERIHHRGSSLP 270
Score = 73.0 bits (153), Expect(2) = 1e-038
Identities = 28/48 (58%), Positives = 36/48 (75%)
Frame = +1 / +1
Query: 763 PNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALA 906
PNPN L GA+VGGPD ND F D+R + +++EP TYIN+ +G LA LA
Sbjct: 337 PNPNRLVGAVVGGPDNNDHFSDERNDYAHSEPTTYINAPLVGSLAYLA 480
>gb|DT631580.1|DT631580 EST1146511 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFA34 3' end, mRNA sequence
Length = 854
Score = 103 bits (220), Expect(2) = 2e-037
Identities = 41/89 (46%), Positives = 60/89 (67%)
Frame = +1 / +3
Query: 424 TPGGVIHLRDGANSQYVTSTAFLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDY 603
TPGG++ + N Q+VTS +FLL VY+D L T + + C + P++L A+ Q+DY
Sbjct: 138 TPGGLLFWQKWNNIQFVTSASFLLTVYSDCLTATHKNIQCPGGAVQPSKLVSLAQSQIDY 317
Query: 604 LLGANPRHSSYVVGFGANPPTQPHHRGAS 690
+LG NPR +SY+VG+G+N P Q HHR +S
Sbjct: 318 ILGDNPRATSYMVGYGSNYPQQVHHRASS 404
Score = 73.0 bits (153), Expect(2) = 2e-037
Identities = 30/66 (45%), Positives = 38/66 (57%)
Frame = +1 / +3
Query: 718 VNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLA 897
V C + W + +PN L GA+VGGPD+ND F D+R N TEP TY N+ +G LA
Sbjct: 435 VTCTGGYSTWYSSKGSDPNVLHGALVGGPDQNDNFADERNNYEQTEPATYNNAPIVGVLA 614
Query: 898 ALAVRG 915
L G
Sbjct: 615 RLHAGG 632
>gb|DR683696.1|DR683696 EST1073772 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAK25 3' end, mRNA sequence
Length = 848
Score = 103 bits (220), Expect(2) = 2e-037
Identities = 41/89 (46%), Positives = 60/89 (67%)
Frame = +1 / +1
Query: 424 TPGGVIHLRDGANSQYVTSTAFLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDY 603
TPGG++ + N Q+VTS +FLL VY+D L T + + C + P++L A+ Q+DY
Sbjct: 130 TPGGLLFWQKWNNIQFVTSASFLLTVYSDCLTATHKNIQCPGGAVQPSKLVSLAQSQIDY 309
Query: 604 LLGANPRHSSYVVGFGANPPTQPHHRGAS 690
+LG NPR +SY+VG+G+N P Q HHR +S
Sbjct: 310 ILGDNPRATSYMVGYGSNYPQQVHHRASS 396
Score = 73.0 bits (153), Expect(2) = 2e-037
Identities = 30/66 (45%), Positives = 38/66 (57%)
Frame = +1 / +1
Query: 718 VNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLA 897
V C + W + +PN L GA+VGGPD+ND F D+R N TEP TY N+ +G LA
Sbjct: 427 VTCTGGYSTWYSSKGSDPNVLHGALVGGPDQNDNFADERNNYEQTEPATYNNAPIVGVLA 606
Query: 898 ALAVRG 915
L G
Sbjct: 607 RLHAGG 624
>gb|DR695212.1|DR695212 EST1085305 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEM01 3' end, mRNA sequence
Length = 636
Score = 99.6 bits (211), Expect(2) = 8e-037
Identities = 40/89 (44%), Positives = 57/89 (64%)
Frame = +1 / +2
Query: 424 TPGGVIHLRDGANSQYVTSTAFLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDY 603
TPGG+++ + N VTS +FLL Y+D L G+ + C + P+ L FA+ Q+DY
Sbjct: 41 TPGGLLYWQKWNNMHVVTSASFLLTAYSDYLSSAGKQLQCPGGQVNPSELLAFAKSQVDY 220
Query: 604 LLGANPRHSSYVVGFGANPPTQPHHRGAS 690
+LG NPR +SY+VG+G N P Q HHR +S
Sbjct: 221 ILGDNPRATSYMVGYGPNYPRQVHHRASS 307
Score = 75.3 bits (158), Expect(2) = 8e-037
Identities = 31/64 (48%), Positives = 38/64 (59%)
Frame = +1 / +2
Query: 712 TDVNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGP 891
T V+C + W ++ +PN L GA+VGGPD ND F D R N TEP TY NS +G
Sbjct: 332 TFVSCKGGYSIWFDRERSDPNVLVGAVVGGPDNNDNFADSRDNYQQTEPTTYNNSPLVGV 511
Query: 892 LAAL 903
LA L
Sbjct: 512 LARL 523
>gb|CO365053.1|CO365053 RTK1_23_H06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_23_H06_A029 3', mRNA sequence
Length = 875
Score = 99.1 bits (210), Expect(2) = 6e-036
Identities = 41/79 (51%), Positives = 52/79 (65%)
Frame = +1 / +2
Query: 460 NSQYVTSTAFLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYV 639
N QYVTST FLL YA L + Q V CGN + P R+ A++Q+DY+LG NP SY+
Sbjct: 20 NLQYVTSTTFLLFTYAKYLRVSKQVVRCGNMVVTPTRIRTLAKRQVDYILGDNPLGMSYM 199
Query: 640 VGFGANPPTQPHHRGASTP 696
VG+GA P + HHRG+S P
Sbjct: 200 VGYGAKFPERIHHRGSSLP 256
Score = 73.0 bits (153), Expect(2) = 6e-036
Identities = 28/48 (58%), Positives = 36/48 (75%)
Frame = +1 / +2
Query: 763 PNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALA 906
PNPN L GA+VGGPD ND F D+R + +++EP TYIN+ +G LA LA
Sbjct: 323 PNPNRLVGAVVGGPDNNDHFSDERNDYAHSEPTTYINAPLVGSLAYLA 466
>gb|DR167697.1|DR167697 RTPHOS1_20_B02.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_20_B02_A029 5', mRNA sequence
Length = 835
Score = 99.1 bits (210), Expect(2) = 6e-036
Identities = 41/79 (51%), Positives = 52/79 (65%)
Frame = +1 / +2
Query: 460 NSQYVTSTAFLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYV 639
N QYVTST FLL YA L + Q V CGN + P R+ A++Q+DY+LG NP SY+
Sbjct: 35 NLQYVTSTTFLLFTYAKYLRVSKQVVRCGNMVVTPTRIRTLAKRQVDYILGDNPLGMSYM 214
Query: 640 VGFGANPPTQPHHRGASTP 696
VG+GA P + HHRG+S P
Sbjct: 215 VGYGAKFPERIHHRGSSLP 271
Score = 73.0 bits (153), Expect(2) = 6e-036
Identities = 28/48 (58%), Positives = 36/48 (75%)
Frame = +1 / +2
Query: 763 PNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALA 906
PNPN L GA+VGGPD ND F D+R + +++EP TYIN+ +G LA LA
Sbjct: 338 PNPNRLVGAVVGGPDNNDHFSDERNDYAHSEPTTYINAPLVGSLAYLA 481
>gb|CO363908.1|CO363908 RTK1_12_B11.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_12_B11_A029 5', mRNA sequence
Length = 780
Score = 99.1 bits (210), Expect(2) = 6e-036
Identities = 41/79 (51%), Positives = 52/79 (65%)
Frame = +1 / -1
Query: 460 NSQYVTSTAFLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYV 639
N QYVTST FLL YA L + Q V CGN + P R+ A++Q+DY+LG NP SY+
Sbjct: 768 NLQYVTSTTFLLFTYAKYLRVSKQVVRCGNMVVTPTRIRTLAKRQVDYILGDNPLGMSYM 589
Query: 640 VGFGANPPTQPHHRGASTP 696
VG+GA P + HHRG+S P
Sbjct: 588 VGYGAKFPERIHHRGSSLP 532
Score = 73.0 bits (153), Expect(2) = 6e-036
Identities = 28/48 (58%), Positives = 36/48 (75%)
Frame = +1 / -1
Query: 763 PNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALA 906
PNPN L GA+VGGPD ND F D+R + +++EP TYIN+ +G LA LA
Sbjct: 465 PNPNRLVGAVVGGPDNNDHFSDERNDYAHSEPTTYINAPLVGSLAYLA 322
>gb|DR101611.1|DR101611 STRR1_74_C04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_74_C04_A033 5', mRNA sequence
Length = 574
Score = 99.1 bits (210), Expect(2) = 6e-036
Identities = 41/79 (51%), Positives = 52/79 (65%)
Frame = +1 / +3
Query: 460 NSQYVTSTAFLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYV 639
N QYVTST FLL YA L + Q V CGN + P R+ A++Q+DY+LG NP SY+
Sbjct: 15 NLQYVTSTTFLLFTYAKYLRVSKQVVRCGNMVVTPTRIRTLAKRQVDYILGDNPLGMSYM 194
Query: 640 VGFGANPPTQPHHRGASTP 696
VG+GA P + HHRG+S P
Sbjct: 195 VGYGAKFPERIHHRGSSLP 251
Score = 73.0 bits (153), Expect(2) = 6e-036
Identities = 28/48 (58%), Positives = 36/48 (75%)
Frame = +1 / +3
Query: 763 PNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALA 906
PNPN L GA+VGGPD ND F D+R + +++EP TYIN+ +G LA LA
Sbjct: 318 PNPNRLVGAVVGGPDNNDHFSDERNDYAHSEPTTYINAPLVGSLAYLA 461
>gb|DR018974.1|DR018974 STRS1_27_C02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_27_C02_A034 3', mRNA sequence
Length = 794
Score = 97.3 bits (206), Expect(2) = 2e-035
Identities = 40/77 (51%), Positives = 51/77 (66%)
Frame = +1 / +3
Query: 466 QYVTSTAFLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVG 645
QYVTST FLL YA L + Q V CGN + P R+ A++Q+DY+LG NP SY+VG
Sbjct: 3 QYVTSTTFLLFTYAKYLRVSKQVVRCGNMVVTPTRIRTLAKRQVDYILGDNPLGMSYMVG 182
Query: 646 FGANPPTQPHHRGASTP 696
+GA P + HHRG+S P
Sbjct: 183 YGAKFPERIHHRGSSLP 233
Score = 73.0 bits (153), Expect(2) = 2e-035
Identities = 28/48 (58%), Positives = 36/48 (75%)
Frame = +1 / +3
Query: 763 PNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALA 906
PNPN L GA+VGGPD ND F D+R + +++EP TYIN+ +G LA LA
Sbjct: 300 PNPNRLVGAVVGGPDNNDHFSDERNDYAHSEPTTYINAPLVGSLAYLA 443
>gb|DR018984.1|DR018984 STRS1_27_D02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_27_D02_A034 3', mRNA sequence
Length = 791
Score = 97.3 bits (206), Expect(2) = 2e-035
Identities = 40/77 (51%), Positives = 51/77 (66%)
Frame = +1 / +1
Query: 466 QYVTSTAFLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVG 645
QYVTST FLL YA L + Q V CGN + P R+ A++Q+DY+LG NP SY+VG
Sbjct: 1 QYVTSTTFLLFTYAKYLRVSKQVVRCGNMVVTPTRIRTLAKRQVDYILGDNPLGMSYMVG 180
Query: 646 FGANPPTQPHHRGASTP 696
+GA P + HHRG+S P
Sbjct: 181 YGAKFPERIHHRGSSLP 231
Score = 73.0 bits (153), Expect(2) = 2e-035
Identities = 28/48 (58%), Positives = 36/48 (75%)
Frame = +1 / +1
Query: 763 PNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALA 906
PNPN L GA+VGGPD ND F D+R + +++EP TYIN+ +G LA LA
Sbjct: 298 PNPNRLVGAVVGGPDNNDHFSDERNDYAHSEPTTYINAPLVGSLAYLA 441
>gb|BQ701766.1|BQ701766 NXSI_120_D02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_120_D02 5' similar to Arabidopsis thaliana
sequence At1g64390 endo-beta-1,4-glucanase, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 542
Score = 104 bits (222), Expect(2) = 2e-035
Identities = 42/89 (47%), Positives = 60/89 (67%)
Frame = +1 / +1
Query: 424 TPGGVIHLRDGANSQYVTSTAFLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDY 603
TPGG++ + N Q+VTS +FLL VY+D L T + + C + P+ L FA+ Q+DY
Sbjct: 76 TPGGLLFWQKWNNIQFVTSASFLLSVYSDYLTATHKNIQCPGGAVQPSELLSFAQSQIDY 255
Query: 604 LLGANPRHSSYVVGFGANPPTQPHHRGAS 690
+LG NPR +SY+VG+G+N P Q HHR +S
Sbjct: 256 ILGDNPRATSYMVGYGSNYPQQVHHRASS 342
Score = 65.7 bits (137), Expect(2) = 2e-035
Identities = 25/53 (47%), Positives = 32/53 (60%)
Frame = +1 / +1
Query: 718 VNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINS 876
V C + W + +PN L GA+VGGPD+ND F D+R N TEP TY N+
Sbjct: 373 VTCTGGYXTWYSSXXSDPNVLHGALVGGPDQNDNFADERNNYEQTEPATYNNA 531
>gb|DR163085.1|DR163085 RTFE1_24_H02.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_24_H02_A029 5', mRNA sequence
Length = 744
Score = 104 bits (221), Expect(4) = 1e-034
Identities = 43/104 (41%), Positives = 63/104 (60%)
Frame = +1 / +3
Query: 307 VLLAEFNMTSAGGAQNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTA 486
+L+ E + ++ + ++ ADNFVC++LP T Q TPGG+++ N QYVTST
Sbjct: 432 LLVKEVLLRNSKSLEEYRGHADNFVCSLLPGTPNFQAQYTPGGLLYKMSDCNLQYVTSTT 611
Query: 487 FLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGAN 618
FLL YA L + Q V CGN + P R+ A++Q+DY+LG N
Sbjct: 612 FLLFTYAKYLRVSKQVVRCGNMVVTPTRIRTLAKRQVDYILGDN 743
Score = 42.8 bits (87), Expect(4) = 1e-034
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = +1 / +3
Query: 139 CPFYCSYSGYNDEXXXXXXXXXXXXRRQVYADFI 240
CPFYCSYSGYNDE R Y +I
Sbjct: 249 CPFYCSYSGYNDELLWGAAWLQRASRNVSYISYI 350
Score = 30.4 bits (60), Expect(4) = 1e-034
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1 / +3
Query: 52 DKKYSRKLLNKAKLLFTFAKSHLGSY 129
D YSR LL A +F FA H G+Y
Sbjct: 147 DPIYSRHLLQTAMQVFDFADKHRGAY 224
Score = 25.8 bits (50), Expect(4) = 1e-034
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1 / +3
Query: 274 FSWDLKFPGAQVLLAE 321
FSWD K GA+VLL +
Sbjct: 396 FSWDDKHAGARVLLVK 443
>gb|DR683407.1|DR683407 EST1073483 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAG79 3' end, mRNA sequence
Length = 702
Score = 93.6 bits (198), Expect(2) = 2e-034
Identities = 37/77 (48%), Positives = 52/77 (67%)
Frame = +1 / +3
Query: 460 NSQYVTSTAFLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYV 639
N Q+VTS +FLL VY+D L T + + C + P+ L A+ Q+DY+LG NPR +SY+
Sbjct: 12 NIQFVTSASFLLTVYSDYLTATHKNIQCPGGAVQPSELVSLAQSQIDYILGDNPRATSYM 191
Query: 640 VGFGANPPTQPHHRGAS 690
VG+G+N P Q HHR +S
Sbjct: 192 VGYGSNYPQQVHHRASS 242
Score = 73.0 bits (153), Expect(2) = 2e-034
Identities = 30/66 (45%), Positives = 38/66 (57%)
Frame = +1 / +3
Query: 718 VNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLA 897
V C + W + +PN L GA+VGGPD+ND F D+R N TEP TY N+ +G LA
Sbjct: 273 VTCTGGYSTWYSSKGSDPNVLHGALVGGPDQNDNFADERNNYEQTEPATYNNAPIVGVLA 452
Query: 898 ALAVRG 915
L G
Sbjct: 453 RLHAGG 470
>gb|DR072431.1|DR072431 RTDK1_26_F03.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_26_F03_A029 3', mRNA sequence
Length = 667
Score = 132 bits (283), Expect(2) = 1e-033
Identities = 52/126 (41%), Positives = 82/126 (65%)
Frame = +1 / -2
Query: 319 EFNMTSAGGAQNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTAFLLV 498
EF + Q ++ AD+F+C+++P+T+ V TPGG+I+ G+N Q+VT+ +FLL+
Sbjct: 486 EFLLGKVASLQTYRGYADDFICSLIPETSDEHVPFTPGGLIYKPGGSNMQHVTAISFLLL 307
Query: 499 VYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHH 678
YA+ L + + V CG+ + P+RL A++Q+DY+LG NP SY+VG+G P HH
Sbjct: 306 AYANYLGHSSEVVQCGSIQVTPSRLRTAAKRQVDYILGDNPLKLSYMVGYGPRFPQYIHH 127
Query: 679 RGASTP 696
RG+S P
Sbjct: 126 RGSSLP 109
Score = 31.8 bits (63), Expect(2) = 1e-033
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +1 / -2
Query: 763 PNPNELTGAIVGGP 804
PNPN L GA+VGGP
Sbjct: 42 PNPNLLVGAVVGGP 1
>gb|BG040101.1|BG040101 NXSI_106_E02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_106_E02 5' similar to Arabidopsis thaliana
sequence At4g02290 putative endo-1,4-beta glucanase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 550
Score = 134 bits (287), Expect(2) = 6e-033
Identities = 56/130 (43%), Positives = 79/130 (60%)
Frame = +1 / +2
Query: 307 VLLAEFNMTSAGGAQNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTA 486
+L E + ++ + ++ ADNFVC++LP T Q TPGG+++ N QYVTST
Sbjct: 119 LLAKEVLLRNSKSLEEYRGHADNFVCSLLPGTPNSQAQYTPGGLLYKMSDCNLQYVTSTT 298
Query: 487 FLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPT 666
FLL YA L + Q V CGN + P R+ A++Q+DY+LG NP SY+VG+ A P
Sbjct: 299 FLLFTYAKYLRVSKQVVRCGNMVVTPTRIRTLAKRQVDYILGDNPLGMSYMVGYXAKFPE 478
Query: 667 QPHHRGASTP 696
+ HHRG+S P
Sbjct: 479 RIHHRGSSLP 508
Score = 27.6 bits (54), Expect(2) = 6e-033
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1 / +2
Query: 274 FSWDLKFPGAQVLLAE 321
FSWD K GA+VLLA+
Sbjct: 83 FSWDDKHAGARVLLAK 130
>gb|DR099221.1|DR099221 STRR1_54_B05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_54_B05_A033 3', mRNA sequence
Length = 670
Score = 95.5 bits (202), Expect(2) = 8e-033
Identities = 39/80 (48%), Positives = 50/80 (62%)
Frame = +1 / +1
Query: 457 ANSQYVTSTAFLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSY 636
+N QYVT+T FLL YA L Q V CG + P R+ A++Q+DY+LG NP SY
Sbjct: 13 SNLQYVTTTTFLLFTYAKYLTAAHQVVTCGGVTVTPTRIRTLAKRQVDYILGDNPLGISY 192
Query: 637 VVGFGANPPTQPHHRGASTP 696
+VG+GA P HHRG+S P
Sbjct: 193 MVGYGAKFPEHIHHRGSSLP 252
Score = 66.1 bits (138), Expect(2) = 8e-033
Identities = 25/48 (52%), Positives = 35/48 (72%)
Frame = +1 / +1
Query: 763 PNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALA 906
PNPN L GA+VGGPD +D F D R + +++EP TYIN+ +G LA ++
Sbjct: 319 PNPNILVGAVVGGPDNSDHFPDDRNDYAHSEPTTYINAPLVGSLAYMS 462
>gb|DT636766.1|DT636766 EST1151697 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGV55 3' end, mRNA sequence
Length = 835
Score = 102 bits (218), Expect(3) = 7e-032
Identities = 41/89 (46%), Positives = 59/89 (66%)
Frame = +1 / +1
Query: 424 TPGGVIHLRDGANSQYVTSTAFLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDY 603
TPGG++ + N Q+VTS +FLL VY+D L T + + C + P+ L A+ Q+DY
Sbjct: 529 TPGGLLFWQKWNNIQFVTSASFLLTVYSDYLTATHKNIQCPGGAVQPSELVSLAQSQIDY 708
Query: 604 LLGANPRHSSYVVGFGANPPTQPHHRGAS 690
+LG NPR +SY+VG+G+N P Q HHR +S
Sbjct: 709 ILGDNPRATSYMVGYGSNYPQQVHHRASS 795
Score = 41.4 bits (84), Expect(3) = 7e-032
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1 / +1
Query: 265 VAEFSWDLKFPGAQVLLAEFNMTSAGGAQN 354
+ EFSWD+K+ G QVL ++F M GG N
Sbjct: 358 MTEFSWDVKYAGVQVLASKFLMQGRGGQSN 447
Score = 37.3 bits (75), Expect(3) = 7e-032
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +1 / +1
Query: 52 DKKYSRKLLNKAKLLFTFAKSHLGSYD 132
D YS +LLN A+ LFTFA + G YD
Sbjct: 118 DPAYSNELLNHAEQLFTFADKYRGKYD 198
>gb|DR691236.1|DR691236 EST1081322 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD586 3' end, mRNA sequence
Length = 785
Score = 100 bits (214), Expect(3) = 2e-031
Identities = 40/88 (45%), Positives = 58/88 (65%)
Frame = +1 / +2
Query: 424 TPGGVIHLRDGANSQYVTSTAFLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDY 603
TPGG++ + N Q+VTS +FLL VY+D L T + + C + P+ L A+ Q+DY
Sbjct: 521 TPGGLLFWQKWNNIQFVTSASFLLTVYSDYLTATHKNIQCPGGAVQPSELVSLAQSQIDY 700
Query: 604 LLGANPRHSSYVVGFGANPPTQPHHRGA 687
+LG NPR +SY+VG+G+N P Q HHR +
Sbjct: 701 ILGDNPRATSYMVGYGSNYPQQVHHRAS 784
Score = 41.4 bits (84), Expect(3) = 2e-031
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1 / +2
Query: 265 VAEFSWDLKFPGAQVLLAEFNMTSAGGAQN 354
+ EFSWD+K+ G QVL ++F M GG N
Sbjct: 350 MTEFSWDVKYAGVQVLASKFLMQGRGGQSN 439
Score = 37.3 bits (75), Expect(3) = 2e-031
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +1 / +2
Query: 52 DKKYSRKLLNKAKLLFTFAKSHLGSYD 132
D YS +LLN A+ LFTFA + G YD
Sbjct: 110 DPAYSNELLNHAEQLFTFADKYRGKYD 190
>gb|CO176214.1|CO176214 NDL1_60_C02.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_60_C02_A029 5', mRNA sequence
Length = 415
Score = 135 bits (290), Expect = 5e-031
Identities = 55/116 (47%), Positives = 74/116 (63%)
Frame = +1 / +2
Query: 349 QNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTAFLLVVYADLLLRTG 528
+ ++ ADNFVC++LP T Q TPGG+++ N QYVTST FLL YA L +
Sbjct: 23 EEYRGHADNFVCSLLPGTPNSQAQYTPGGLLYKMSDCNLQYVTSTTFLLFTYAKYLRVSK 202
Query: 529 QTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
Q V CGN + P R+ A++Q+DY+LG NP SY+VG+GA P + HHRG+S P
Sbjct: 203 QVVRCGNMVVTPTRIRTLAKRQVDYILGDNPLGMSYMVGYGAKFPERIHHRGSSLP 370
>gb|CV035007.1|CV035007 RTNACL1_13_B12.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_13_B12_A029 3', mRNA sequence
Length = 879
Score = 80.8 bits (170), Expect(2) = 2e-030
Identities = 32/67 (47%), Positives = 45/67 (67%)
Frame = +1 / -1
Query: 490 LLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQ 669
LL VY+D L T + + C + P+ L FA+ Q+DY+LG NPR +SY+VG+G+N P Q
Sbjct: 852 LLSVYSDYLTATHKNIQCPGGAVQPSELLSFAQSQIDYILGDNPRATSYMVGYGSNYPQQ 673
Query: 670 PHHRGAS 690
HHR +S
Sbjct: 672 VHHRASS 652
Score = 73.0 bits (153), Expect(2) = 2e-030
Identities = 30/66 (45%), Positives = 38/66 (57%)
Frame = +1 / -1
Query: 718 VNCGLSFGDWMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLA 897
V C + W + +PN L GA+VGGPD+ND F D+R N TEP TY N+ +G LA
Sbjct: 621 VTCTGGYSTWYSSKGSDPNVLHGALVGGPDQNDNFADERNNYEQTEPATYNNAPIVGVLA 442
Query: 898 ALAVRG 915
L G
Sbjct: 441 RLHAGG 424
>gb|DR020253.1|DR020253 STRS1_35_D09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_35_D09_A034 5', mRNA sequence
Length = 734
Score = 80.8 bits (170), Expect(2) = 2e-030
Identities = 33/69 (47%), Positives = 44/69 (63%)
Frame = +1 / -1
Query: 490 LLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQ 669
LL YA L + Q V CGN + P R+ A++Q+DY+LG NP SY+VG+GA P +
Sbjct: 734 LLFTYAKYLRVSKQVVRCGNMVVTPTRIRTLAKRQVDYILGDNPLGMSYMVGYGAKFPER 555
Query: 670 PHHRGASTP 696
HHRG+S P
Sbjct: 554 IHHRGSSLP 528
Score = 73.0 bits (153), Expect(2) = 2e-030
Identities = 28/48 (58%), Positives = 36/48 (75%)
Frame = +1 / -1
Query: 763 PNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALA 906
PNPN L GA+VGGPD ND F D+R + +++EP TYIN+ +G LA LA
Sbjct: 461 PNPNRLVGAVVGGPDNNDHFSDERNDYAHSEPTTYINAPLVGSLAYLA 318
>gb|DR072510.1|DR072510 RTDK1_26_F03.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_26_F03_A029 5', mRNA sequence
Length = 655
Score = 90.0 bits (190), Expect(2) = 2e-030
Identities = 36/80 (45%), Positives = 54/80 (67%)
Frame = +1 / -1
Query: 457 ANSQYVTSTAFLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSY 636
+N Q+VT+ +FLL+ YA+ L + + V CG+ + P+RL A++Q+DY+LG NP SY
Sbjct: 655 SNMQHVTAISFLLLAYANYLGHSSEVVQCGSIQVTPSRLRTAAKRQVDYILGDNPLKLSY 476
Query: 637 VVGFGANPPTQPHHRGASTP 696
+VG+G P HHRG+S P
Sbjct: 475 MVGYGPRFPQYIHHRGSSLP 416
Score = 63.4 bits (132), Expect(2) = 2e-030
Identities = 25/45 (55%), Positives = 30/45 (66%)
Frame = +1 / -1
Query: 763 PNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLA 897
PNPN L GA+VGGPD D + D R N +EP TYIN+ +G LA
Sbjct: 349 PNPNLLVGAVVGGPDSQDQYPDNRPNFRQSEPTTYINAPLVGALA 215
>gb|DR167591.1|DR167591 RTPHOS1_19_F11.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_19_F11_A029 5', mRNA sequence
Length = 829
Score = 65.7 bits (137), Expect(3) = 9e-030
Identities = 26/45 (57%), Positives = 30/45 (66%)
Frame = +1 / -3
Query: 562 PARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
P L +FA Q+DY+LG NP SY+VGFG N P HHRGAS P
Sbjct: 593 PQDLRKFAFSQVDYILGENPMRMSYLVGFGDNYPKHVHHRGASIP 459
Score = 64.8 bits (135), Expect(3) = 9e-030
Identities = 25/53 (47%), Positives = 32/53 (60%)
Frame = +1 / -3
Query: 745 WMAPDKPNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAAL 903
W PNPN TGA+VGGP +ND F+D R N EP TY ++ +G L+ L
Sbjct: 416 WFNSKSPNPNVATGALVGGPFQNDSFIDIRSNPMQNEPSTYNSAALVGLLSGL 258
Score = 38.6 bits (78), Expect(3) = 9e-030
Identities = 17/57 (29%), Positives = 31/57 (54%)
Frame = +1 / -3
Query: 349 QNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTAFLLVVYADLLL 519
+ +K A+ +CA+LP + T GG+I + Q+ ++A L ++Y+D LL
Sbjct: 812 EQYKMTAEAIICALLPHSPTSAPNRTEGGLIWITQWNAIQHSVNSALLALIYSDYLL 642
>gb|DR070111.1|DR070111 RTDK1_11_G12.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_11_G12_A029 3', mRNA sequence
Length = 841
Score = 95.9 bits (203), Expect(3) = 6e-029
Identities = 40/99 (40%), Positives = 58/99 (58%)
Frame = +1 / -2
Query: 307 VLLAEFNMTSAGGAQNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTA 486
+L E + ++ + ++ ADNFVC++LP T Q TPGG+++ N QYVTST
Sbjct: 297 LLAKEVLLRNSKSLEEYRGHADNFVCSLLPGTPNSQAQYTPGGLLYKMSDCNLQYVTSTT 118
Query: 487 FLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDY 603
FLL YA L + Q V CGN + P R+ A++Q+DY
Sbjct: 117 FLLFTYAKYLRVSKQVVRCGNMVVTPTRIRTLAKRQVDY 1
Score = 42.8 bits (87), Expect(3) = 6e-029
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = +1 / -2
Query: 139 CPFYCSYSGYNDEXXXXXXXXXXXXRRQVYADFI 240
CPFYCSYSGYNDE R Y +I
Sbjct: 480 CPFYCSYSGYNDELLWGAAWLQRASRNVSYISYI 379
Score = 27.6 bits (54), Expect(3) = 6e-029
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1 / -2
Query: 274 FSWDLKFPGAQVLLAE 321
FSWD K GA+VLLA+
Sbjct: 333 FSWDDKHAGARVLLAK 286
>gb|DR161469.1|DR161469 RTFE1_12_A09.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_12_A09_A029 3', mRNA sequence
Length = 804
Score = 74.4 bits (156), Expect(2) = 1e-028
Identities = 28/56 (50%), Positives = 38/56 (67%)
Frame = +1 / +2
Query: 529 QTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
Q V CGN + P R+ A++Q+DY+LG NP SY+VG+GA P + HHRG+S P
Sbjct: 8 QVVRCGNMVVTPTRIRTLAKRQVDYILGDNPLGMSYMVGYGAKFPERIHHRGSSLP 175
Score = 73.0 bits (153), Expect(2) = 1e-028
Identities = 28/48 (58%), Positives = 36/48 (75%)
Frame = +1 / +2
Query: 763 PNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALA 906
PNPN L GA+VGGPD ND F D+R + +++EP TYIN+ +G LA LA
Sbjct: 242 PNPNRLVGAVVGGPDNNDHFSDERNDYAHSEPTTYINAPLVGSLAYLA 385
>gb|CF663920.1|CF663920 RTCNT1_6_B08.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_6_B08_A029 3', mRNA sequence
Length = 774
Score = 74.4 bits (156), Expect(2) = 1e-028
Identities = 28/56 (50%), Positives = 38/56 (67%)
Frame = +1 / +3
Query: 529 QTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
Q V CGN + P R+ A++Q+DY+LG NP SY+VG+GA P + HHRG+S P
Sbjct: 18 QVVRCGNMVVTPTRIRTLAKRQVDYILGDNPLGMSYMVGYGAKFPERIHHRGSSLP 185
Score = 73.0 bits (153), Expect(2) = 1e-028
Identities = 28/48 (58%), Positives = 36/48 (75%)
Frame = +1 / +3
Query: 763 PNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALA 906
PNPN L GA+VGGPD ND F D+R + +++EP TYIN+ +G LA LA
Sbjct: 252 PNPNRLVGAVVGGPDNNDHFSDERNDYAHSEPTTYINAPLVGSLAYLA 395
>gb|DR167624.1|DR167624 RTPHOS1_20_B02.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_20_B02_A029 3', mRNA sequence
Length = 752
Score = 74.4 bits (156), Expect(2) = 1e-028
Identities = 28/56 (50%), Positives = 38/56 (67%)
Frame = +1 / +2
Query: 529 QTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
Q V CGN + P R+ A++Q+DY+LG NP SY+VG+GA P + HHRG+S P
Sbjct: 26 QVVRCGNMVVTPTRIRTLAKRQVDYILGDNPLGMSYMVGYGAKFPERIHHRGSSLP 193
Score = 73.0 bits (153), Expect(2) = 1e-028
Identities = 28/48 (58%), Positives = 36/48 (75%)
Frame = +1 / +2
Query: 763 PNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALA 906
PNPN L GA+VGGPD ND F D+R + +++EP TYIN+ +G LA LA
Sbjct: 260 PNPNRLVGAVVGGPDNNDHFSDERNDYAHSEPTTYINAPLVGSLAYLA 403
>gb|DR070193.1|DR070193 RTDK1_11_G12.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_11_G12_A029 5', mRNA sequence
Length = 749
Score = 74.4 bits (156), Expect(2) = 1e-028
Identities = 28/56 (50%), Positives = 38/56 (67%)
Frame = +1 / -1
Query: 529 QTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHRGASTP 696
Q V CGN + P R+ A++Q+DY+LG NP SY+VG+GA P + HHRG+S P
Sbjct: 725 QVVRCGNMVVTPTRIRTLAKRQVDYILGDNPLGMSYMVGYGAKFPERIHHRGSSLP 558
Score = 73.0 bits (153), Expect(2) = 1e-028
Identities = 28/48 (58%), Positives = 36/48 (75%)
Frame = +1 / -1
Query: 763 PNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALA 906
PNPN L GA+VGGPD ND F D+R + +++EP TYIN+ +G LA LA
Sbjct: 491 PNPNRLVGAVVGGPDNNDHFSDERNDYAHSEPTTYINAPLVGSLAYLA 348
>gb|CX715048.1|CX715048 RTPQ1_30_B02.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_30_B02_A032 5', mRNA sequence
Length = 421
Score = 118 bits (252), Expect(2) = 3e-028
Identities = 49/115 (42%), Positives = 70/115 (60%)
Frame = +1 / +3
Query: 307 VLLAEFNMTSAGGAQNFKSQADNFVCAVLPDTAFHQVFITPGGVIHLRDGANSQYVTSTA 486
+L E + ++ + ++ ADNFVC++LP T Q TPGG+++ N QYVTST
Sbjct: 75 LLAKEVLLRNSKSLEEYRGHADNFVCSLLPGTPNSQAQYTPGGLLYKMSDCNLQYVTSTT 254
Query: 487 FLLVVYADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFG 651
FLL YA L + Q V CGN + P R+ A++Q+DY+LG NP SY+VG+G
Sbjct: 255 FLLFTYAKYLRVSKQVVRCGNMVVTPTRIRTLAKRQVDYILGDNPLGMSYMVGYG 419
Score = 27.6 bits (54), Expect(2) = 3e-028
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1 / +3
Query: 274 FSWDLKFPGAQVLLAE 321
FSWD K GA+VLLA+
Sbjct: 39 FSWDDKHAGARVLLAK 86
>gb|CO370530.1|CO370530 RTK1_68_B06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_68_B06_A029 5', mRNA sequence
Length = 708
Score = 74.4 bits (156), Expect(2) = 6e-028
Identities = 30/65 (46%), Positives = 41/65 (63%)
Frame = +1 / -2
Query: 502 YADLLLRTGQTVLCGNQPLPPARLHEFARQQMDYLLGANPRHSSYVVGFGANPPTQPHHR 681
YA L + Q V CGN P R+ A++Q+DY+LG NP SY+VG+G+ P + HHR
Sbjct: 701 YAKYLSVSNQVVRCGNIIATPTRIRTLAKRQVDYILGDNPLGMSYMVGYGSKFPERIHHR 522
Query: 682 GASTP 696
G+S P
Sbjct: 521 GSSLP 507
Score = 70.7 bits (148), Expect(2) = 6e-028
Identities = 29/51 (56%), Positives = 37/51 (72%)
Frame = +1 / -2
Query: 763 PNPNELTGAIVGGPDKNDGFVDKRGNSSYTEPCTYINSLAIGPLAALAVRG 915
PNPN L GA+VGGPD ND F D+R + +++EP TYIN+ +G LA LA G
Sbjct: 440 PNPNILVGAVVGGPDNNDRFSDERNDYAHSEPTTYINAPFVGCLAYLAQFG 288
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 421,177,394
Number of Sequences: 355925
Number of extensions: 6076403
Number of successful extensions: 48661
Number of sequences better than 1.0e-020: 86
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 18318108240
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)