TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3754578.2.1
         (725 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CX712891.1|CX712891  RTPQ1_5_B06.g1_A032 Roots treated wi...   146   1e-034
gb|DR111377.1|DR111377  RTS1_17_F12.b1_A029 Roots minus sulf...   146   1e-034
gb|DR116979.1|DR116979  RTMG1_4_B01.b1_A029 Roots minus magn...   146   1e-034
gb|DR117061.1|DR117061  RTMG1_4_B01.g1_A029 Roots minus magn...   146   1e-034
gb|DR694121.1|DR694121  EST1084211 Normalized pine embryo li...   137   6e-032
gb|DT638404.1|DT638404  EST1153335 Normalized pine embryo li...   137   8e-032

>gb|CX712891.1|CX712891 RTPQ1_5_B06.g1_A032 Roots treated with paraquat Pinus taeda cDNA
           clone RTPQ1_5_B06_A032 5', mRNA sequence
          Length = 781

 Score =  146 bits (314), Expect = 1e-034
 Identities = 49/66 (74%), Positives = 61/66 (92%)
 Frame = -3 / -1

                                                                       
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
           EDVSMG+WVE+FN++ PVQYSH WKFCQ+GC+++YYTAHYQSPRQM+C+WDKL +G+A C
Sbjct: 346 EDVSMGMWVEQFNASTPVQYSHDWKFCQFGCIDDYYTAHYQSPRQMICMWDKLSKGKAQC 167

                 
Query: 537 CNYR*Q 520
           CN R*Q
Sbjct: 166 CNVR*Q 149



>gb|DR111377.1|DR111377 RTS1_17_F12.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
           RTS1_17_F12_A029 3', mRNA sequence
          Length = 674

 Score =  146 bits (314), Expect = 1e-034
 Identities = 49/66 (74%), Positives = 61/66 (92%)
 Frame = -3 / +2

                                                                       
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
           EDVSMG+WVE+FN++ PVQYSH WKFCQ+GC+++YYTAHYQSPRQM+C+WDKL +G+A C
Sbjct: 149 EDVSMGMWVEQFNASTPVQYSHDWKFCQFGCIDDYYTAHYQSPRQMICMWDKLSKGKAQC 328

                 
Query: 537 CNYR*Q 520
           CN R*Q
Sbjct: 329 CNVR*Q 346



>gb|DR116979.1|DR116979 RTMG1_4_B01.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
           RTMG1_4_B01_A029 3', mRNA sequence
          Length = 725

 Score =  146 bits (314), Expect = 1e-034
 Identities = 49/66 (74%), Positives = 61/66 (92%)
 Frame = -3 / +3

                                                                       
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
           EDVSMG+WVE+FN++ PVQYSH WKFCQ+GC+++YYTAHYQSPRQM+C+WDKL +G+A C
Sbjct: 231 EDVSMGMWVEQFNASTPVQYSHDWKFCQFGCIDDYYTAHYQSPRQMICMWDKLSKGKAQC 410

                 
Query: 537 CNYR*Q 520
           CN R*Q
Sbjct: 411 CNVR*Q 428



>gb|DR117061.1|DR117061 RTMG1_4_B01.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
           RTMG1_4_B01_A029 5', mRNA sequence
          Length = 800

 Score =  146 bits (314), Expect = 1e-034
 Identities = 49/66 (74%), Positives = 61/66 (92%)
 Frame = -3 / +3

                                                                       
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
           EDVSMG+WVE+FN++ PVQYSH WKFCQ+GC+++YYTAHYQSPRQM+C+WDKL +G+A C
Sbjct: 360 EDVSMGMWVEQFNASTPVQYSHDWKFCQFGCIDDYYTAHYQSPRQMICMWDKLSKGKAQC 539

                 
Query: 537 CNYR*Q 520
           CN R*Q
Sbjct: 540 CNVR*Q 557



>gb|DR694121.1|DR694121 EST1084211 Normalized pine embryo library, Lib_D Pinus taeda cDNA
           clone PWAE837 3' end, mRNA sequence
          Length = 746

 Score =  137 bits (294), Expect(2) = 6e-032
 Identities = 45/62 (72%), Positives = 58/62 (93%)
 Frame = -3 / +3

                                                                       
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
           EDVSMG+WVE+FN+++ VQYSH+WKFCQYGC ++YYTAHYQSPRQMLC+WDKL++G+  C
Sbjct: 195 EDVSMGMWVEQFNASSRVQYSHNWKFCQYGCTDDYYTAHYQSPRQMLCMWDKLLKGKVEC 374

             
Query: 537 CN 532
           C+
Sbjct: 375 CS 380




 Score = 22.1 bits (42), Expect(2) = 6e-032
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1 / +3

                            
Query: 83  SRSDVRLRSFLIVITRH 33
           S +D   RSF+++ TRH
Sbjct: 657 SYADKIFRSFILLFTRH 707



>gb|DT638404.1|DT638404 EST1153335 Normalized pine embryo library, Lib_D Pinus taeda cDNA
           clone PIMHE72 3' end, mRNA sequence
          Length = 824

 Score =  137 bits (294), Expect = 8e-032
 Identities = 45/62 (72%), Positives = 58/62 (93%)
 Frame = -3 / +2

                                                                       
Query: 717 EDVSMGLWVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASC 538
           EDVSMG+WVE+FN+++ VQYSH+WKFCQYGC ++YYTAHYQSPRQMLC+WDKL++G+  C
Sbjct: 272 EDVSMGMWVEQFNASSRVQYSHNWKFCQYGCTDDYYTAHYQSPRQMLCMWDKLLKGKVEC 451

             
Query: 537 CN 532
           C+
Sbjct: 452 CS 457



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 453,811,371
Number of Sequences: 355925
Number of extensions: 7227653
Number of successful extensions: 54347
Number of sequences better than 1.0e-020: 6
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 10190434905
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)