TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748535.2.1
(619 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT636879.1|DT636879 EST1151810 Normalized pine embryo li... 214 3e-065
gb|DR691945.1|DR691945 EST1082032 Normalized pine embryo li... 214 2e-064
gb|DR686435.1|DR686435 EST1076513 Normalized pine embryo li... 204 3e-062
gb|DT633502.1|DT633502 EST1148433 Normalized pine embryo li... 154 1e-061
gb|DR693591.1|DR693591 EST1083680 Normalized pine embryo li... 209 1e-056
gb|CX645971.1|CX645971 COLD1_6_A08.g1_A029 Root cold Pinus ... 202 2e-051
gb|DR168008.1|DR168008 RTPHOS1_22_C11.g1_A029 Roots minus p... 166 1e-040
dbj|BD273093.1| Materials and methods for the modification ... 119 3e-037
gb|DR088681.1|DR088681 RTAL1_3_F02.g1_A029 Roots plus added... 114 5e-037
gb|CF479172.1|CF479172 RTWW3_24_C04.g1_A022 Well-watered lo... 146 1e-034
gb|DN460009.1|DN460009 EST955808 Sequencing ESTs from loblo... 146 1e-034
gb|DN461652.1|DN461652 EST957451 Sequencing ESTs from loblo... 146 1e-034
gb|DN464524.1|DN464524 EST960323 Sequencing ESTs from loblo... 146 1e-034
gb|BX679115.1|BX679115 BX679115 RS Pinus pinaster cDNA clon... 144 7e-034
gb|CF388646.1|CF388646 RTDR2_4_H02.g1_A021 Loblolly pine ro... 141 5e-033
gb|CF387574.1|CF387574 RTDR1_20_C08.g1_A015 Loblolly pine r... 139 1e-032
gb|CO198411.1|CO198411 GEO1_13_B02.g1_A029 Root gravitropis... 113 8e-029
gb|CF672887.1|CF672887 RTCNT1_74_D06.g1_A029 Root control P... 86 4e-027
gb|DR015808.1|DR015808 STRS1_5_F05.g1_A034 Shoot tip pitch ... 102 5e-025
gb|CX713935.1|CX713935 RTPQ1_15_D05.b1_A032 Roots treated w... 99 1e-023
gb|CO409265.1|CO409265 EST839650 Sequencing ESTs from loblo... 101 4e-021
gb|CO409454.1|CO409454 EST839839 Sequencing ESTs from loblo... 101 4e-021
gb|DN446266.1|DN446266 EST942065 Sequencing ESTs from loblo... 101 4e-021
gb|DT625515.1|DT625515 EST1157439 Sequencing ESTs from lobl... 101 4e-021
gb|DT624374.1|DT624374 EST1158649 Sequencing ESTs from lobl... 101 5e-021
>gb|DT636879.1|DT636879 EST1151810 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGX11 3' end, mRNA sequence
Length = 829
Score = 214 bits (461), Expect(3) = 3e-065
Identities = 89/122 (72%), Positives = 98/122 (80%)
Frame = +2 / +2
Query: 254 YPGETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYH 433
+ GET RE+IKRH+HFLALQL LK MKVLDVGCGIGGPL EIARFS TSITGLNNN Y
Sbjct: 221 WKGETLRESIKRHEHFLALQLCLKPAMKVLDVGCGIGGPLREIARFSRTSITGLNNNAYQ 400
Query: 434 ISRGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHAPDAQGVYSEVYRVL 613
ISRGKEL GL + C F+KGDFM MP S++TFDA Y I+ATCHAPDA G Y E+ RVL
Sbjct: 401 ISRGKELNRECGLDKSCDFVKGDFMKMPFSNDTFDAVYTIEATCHAPDAVGCYKEIKRVL 580
Query: 614 KP 619
KP
Sbjct: 581 KP 586
Score = 116 bits (248), Expect(2) = 7e-026
Identities = 59/120 (49%), Positives = 72/120 (60%)
Frame = -2 / -2
Query: 618 GFSTR*TSL*TPCASGXXXXXXXXXXASKVLSDIGMSMKSPFKKQHCSLKPAEEMSSLPL 439
GFST SL* P ASG ASKV + G+ MKSP K P +SS PL
Sbjct: 585 GFSTLFISL*QPTASGA*QVASIV*TASKVSLEKGIFMKSPLTKSQLLSSPHSLLSSFPL 406
Query: 438 EMW*SLLFSPVIDVELNLAISIKGPPIPHPTSKTFIPFLSPNCSAKKCWCRLMASREVSP 259
++ +LLF+PV++V LNLAIS+ GPPIPHPTS TFI + A+KC R + SR VSP
Sbjct: 405 DI*YALLFNPVMEVRLNLAISLSGPPIPHPTSNTFIAGFKQS*RARKCSWRFILSRRVSP 226
Score = 42.8 bits (87), Expect(3) = 3e-065
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = +3 / +2
Query: 114 GALQLARSTGGSISKDQVKSAVDQYVKYHV 203
GAL LA GG+I K+Q+ +AV++Y KYH+
Sbjct: 8 GALDLASGMGGNIEKEQMLTAVEEYEKYHM 97
Score = 30.9 bits (61), Expect(3) = 3e-065
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1 / +2
Query: 208 HGGKQESRKSNYTDLIS 258
+GG + SRKSNYTD+++
Sbjct: 101 YGGDEGSRKSNYTDMVN 151
Score = 22.6 bits (43), Expect(2) = 7e-026
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1 / -2
Query: 196 YLTY*STADLTWSLLIDPPVLRASCSAP 113
Y +Y STA S + PP+ A +AP
Sbjct: 90 YFSYSSTAVSICSFSMLPPIPEARSNAP 7
>gb|DR691945.1|DR691945 EST1082032 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADG12 3' end, mRNA sequence
Length = 832
Score = 214 bits (461), Expect(3) = 2e-064
Identities = 89/122 (72%), Positives = 98/122 (80%)
Frame = +2 / +3
Query: 254 YPGETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYH 433
+ GET RE+IKRH+HFLALQL LK MKVLDVGCGIGGPL EIARFS TSITGLNNN Y
Sbjct: 213 WKGETLRESIKRHEHFLALQLCLKPAMKVLDVGCGIGGPLREIARFSRTSITGLNNNAYQ 392
Query: 434 ISRGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHAPDAQGVYSEVYRVL 613
ISRGKEL GL + C F+KGDFM MP S++TFDA Y I+ATCHAPDA G Y E+ RVL
Sbjct: 393 ISRGKELNRECGLDKSCDFVKGDFMKMPFSNDTFDAVYTIEATCHAPDAVGCYKEIKRVL 572
Query: 614 KP 619
KP
Sbjct: 573 KP 578
Score = 116 bits (248), Expect = 1e-025
Identities = 59/120 (49%), Positives = 72/120 (60%)
Frame = -2 / -1
Query: 618 GFSTR*TSL*TPCASGXXXXXXXXXXASKVLSDIGMSMKSPFKKQHCSLKPAEEMSSLPL 439
GFST SL* P ASG ASKV + G+ MKSP K P +SS PL
Sbjct: 577 GFSTLFISL*QPTASGA*QVASIV*TASKVSLEKGIFMKSPLTKSQLLSSPHSLLSSFPL 398
Query: 438 EMW*SLLFSPVIDVELNLAISIKGPPIPHPTSKTFIPFLSPNCSAKKCWCRLMASREVSP 259
++ +LLF+PV++V LNLAIS+ GPPIPHPTS TFI + A+KC R + SR VSP
Sbjct: 397 DI*YALLFNPVMEVRLNLAISLSGPPIPHPTSNTFIAGFKQS*RARKCSWRFILSRRVSP 218
Score = 40.0 bits (81), Expect(3) = 2e-064
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = +3 / +3
Query: 117 ALQLARSTGGSISKDQVKSAVDQYVKYHV 203
AL LA GG+I K+Q+ +AV++Y KYH+
Sbjct: 3 ALDLASGMGGNIEKEQMLTAVEEYEKYHM 89
Score = 30.9 bits (61), Expect(3) = 2e-064
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1 / +3
Query: 208 HGGKQESRKSNYTDLIS 258
+GG + SRKSNYTD+++
Sbjct: 93 YGGDEGSRKSNYTDMVN 143
>gb|DR686435.1|DR686435 EST1076513 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABG04 3' end, mRNA sequence
Length = 808
Score = 204 bits (439), Expect(3) = 3e-062
Identities = 85/114 (74%), Positives = 93/114 (81%)
Frame = +2 / +3
Query: 260 GETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYHIS 439
GET RE+IKRH+HFLALQL LK MKVLDVGCGIGGPL EIARFS TSITGLNNN Y IS
Sbjct: 465 GETLRESIKRHEHFLALQLCLKPAMKVLDVGCGIGGPLREIARFSWTSITGLNNNAYQIS 644
Query: 440 RGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHAPDAQGVYSEV 601
RGKEL GL + C F+KGDFM MP S++TFDA YAI+ATCHAPDA G Y E+
Sbjct: 645 RGKELNRECGLDKSCDFVKGDFMKMPFSNDTFDAVYAIEATCHAPDAVGCYKEI 806
Score = 111 bits (237), Expect(2) = 2e-024
Identities = 55/113 (48%), Positives = 69/113 (61%)
Frame = -2 / -1
Query: 597 SL*TPCASGXXXXXXXXXXASKVLSDIGMSMKSPFKKQHCSLKPAEEMSSLPLEMW*SLL 418
SL* P ASG ASKV + G+ MKSP K P +SS PL++ +LL
Sbjct: 802 SL*QPTASGA*QVASIA*TASKVSLEKGIFMKSPLTKSQLLSSPHSLLSSFPLDI*YALL 623
Query: 417 FSPVIDVELNLAISIKGPPIPHPTSKTFIPFLSPNCSAKKCWCRLMASREVSP 259
F+PV++V+LNLAIS+ GPPIPHPTS TFI + A+KC R + SR VSP
Sbjct: 622 FNPVMEVQLNLAISLSGPPIPHPTSNTFIAGFKQS*RARKCSWRFILSRRVSP 464
Score = 42.8 bits (87), Expect(3) = 3e-062
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = +3 / +3
Query: 114 GALQLARSTGGSISKDQVKSAVDQYVKYHV 203
GAL LA GG+I K+Q+ +AV++Y KYH+
Sbjct: 246 GALDLASGMGGNIEKEQMLTAVEEYEKYHM 335
Score = 30.9 bits (61), Expect(3) = 3e-062
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1 / +3
Query: 208 HGGKQESRKSNYTDLIS 258
+GG + SRKSNYTD+++
Sbjct: 339 YGGDEGSRKSNYTDMVN 389
Score = 22.6 bits (43), Expect(2) = 2e-024
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1 / -1
Query: 196 YLTY*STADLTWSLLIDPPVLRASCSAP 113
Y +Y STA S + PP+ A +AP
Sbjct: 328 YFSYSSTAVSICSFSMLPPIPEARSNAP 245
>gb|DT633502.1|DT633502 EST1148433 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFV57 3' end, mRNA sequence
Length = 857
Score = 154 bits (330), Expect(4) = 1e-061
Identities = 64/88 (72%), Positives = 70/88 (79%)
Frame = +2 / +3
Query: 356 GIGGPLIEIARFSSTSITGLNNNDYHISRGKELISSAGLSEQCCFLKGDFMDMPISDNTF 535
GIGGPL EIARFS TSITGLNNN Y ISRGKEL GL + C F+KGDFM MP S++TF
Sbjct: 570 GIGGPLREIARFSWTSITGLNNNAYQISRGKELNRECGLDKSCDFVKGDFMKMPFSNDTF 749
Query: 536 DAAYAIQATCHAPDAQGVYSEVYRVLKP 619
DA YAI+ATCHAPDA G Y E+ RVLKP
Sbjct: 750 DAVYAIEATCHAPDAVGCYKEIKRVLKP 833
Score = 84.0 bits (177), Expect(3) = 1e-022
Identities = 43/88 (48%), Positives = 54/88 (61%)
Frame = -2 / -2
Query: 618 GFSTR*TSL*TPCASGXXXXXXXXXXASKVLSDIGMSMKSPFKKQHCSLKPAEEMSSLPL 439
GFST SL* P ASG ASKV + G+ MKSP K P +SS PL
Sbjct: 832 GFSTLFISL*QPTASGA*QVASIA*TASKVSLEKGIFMKSPLTKSQLLSSPHSLLSSFPL 653
Query: 438 EMW*SLLFSPVIDVELNLAISIKGPPIP 355
++ +LLF+PV++V+LNLAIS+ GPPIP
Sbjct: 652 DI*YALLFNPVMEVQLNLAISLSGPPIP 569
Score = 66.1 bits (138), Expect(4) = 1e-061
Identities = 27/33 (81%), Positives = 29/33 (87%)
Frame = +2 / +2
Query: 260 GETSREAIKRHQHFLALQLGLKKGMKVLDVGCG 358
GET RE+IKRH+HFLALQL LK MKVLDVGCG
Sbjct: 473 GETLRESIKRHEHFLALQLCLKPAMKVLDVGCG 571
Score = 42.8 bits (87), Expect(4) = 1e-061
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = +3 / +2
Query: 114 GALQLARSTGGSISKDQVKSAVDQYVKYHV 203
GAL LA GG+I K+Q+ +AV++Y KYH+
Sbjct: 254 GALDLASGMGGNIEKEQMLTAVEEYEKYHM 343
Score = 40.0 bits (81), Expect(3) = 1e-022
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = -2 / -3
Query: 357 PHPTSKTFIPFLSPNCSAKKCWCRLMASREVSP 259
PHPTS TFI + A+KC R + SR VSP
Sbjct: 570 PHPTSNTFIAGFKQS*RARKCSWRFILSRRVSP 472
Score = 30.9 bits (61), Expect(4) = 1e-061
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1 / +2
Query: 208 HGGKQESRKSNYTDLIS 258
+GG + SRKSNYTD+++
Sbjct: 347 YGGDEGSRKSNYTDMVN 397
Score = 22.6 bits (43), Expect(3) = 1e-022
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1 / -3
Query: 196 YLTY*STADLTWSLLIDPPVLRASCSAP 113
Y +Y STA S + PP+ A +AP
Sbjct: 336 YFSYSSTAVSICSFSMLPPIPEARSNAP 253
>gb|DR693591.1|DR693591 EST1083680 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAE147 3' end, mRNA sequence
Length = 733
Score = 209 bits (451), Expect(2) = 1e-056
Identities = 87/122 (71%), Positives = 97/122 (79%)
Frame = +2 / +1
Query: 254 YPGETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYH 433
+ GET RE+IKRH+HFLAL L LK MKVLDVGCGIGGPL EIARFS TSITGLNNN Y
Sbjct: 154 WKGETLRESIKRHEHFLALHLCLKPAMKVLDVGCGIGGPLREIARFSRTSITGLNNNAYQ 333
Query: 434 ISRGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHAPDAQGVYSEVYRVL 613
ISRG+EL GL + C F+ GDFM MP S++TFDA YAI+ATCHAPDA G Y E+ RVL
Sbjct: 334 ISRGRELNRECGLDKSCDFVMGDFMKMPFSNDTFDAVYAIEATCHAPDAVGCYKEIKRVL 513
Query: 614 KP 619
KP
Sbjct: 514 KP 519
Score = 119 bits (255), Expect = 2e-026
Identities = 61/120 (50%), Positives = 72/120 (60%)
Frame = -2 / -3
Query: 618 GFSTR*TSL*TPCASGXXXXXXXXXXASKVLSDIGMSMKSPFKKQHCSLKPAEEMSSLPL 439
GFST SL* P ASG ASKV + G+ MKSP K P +SSLPL
Sbjct: 518 GFSTLFISL*QPTASGA*QVASIA*TASKVSLEKGIFMKSPMTKSQLLSSPHSLLSSLPL 339
Query: 438 EMW*SLLFSPVIDVELNLAISIKGPPIPHPTSKTFIPFLSPNCSAKKCWCRLMASREVSP 259
++ +LLF+PVI+V LNLAIS+ GPPIPHPTS TFI A+KC R + SR VSP
Sbjct: 338 DI*YALLFNPVIEVRLNLAISLSGPPIPHPTSNTFIAGFKQR*RARKCSWRFILSRSVSP 159
Score = 30.9 bits (61), Expect(2) = 1e-056
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1 / +1
Query: 208 HGGKQESRKSNYTDLIS 258
+GG + SRKSNYTD+++
Sbjct: 34 YGGDEGSRKSNYTDMVN 84
>gb|CX645971.1|CX645971 COLD1_6_A08.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_6_A08_A029 5', mRNA sequence
Length = 691
Score = 202 bits (435), Expect = 2e-051
Identities = 84/112 (75%), Positives = 91/112 (81%)
Frame = +2 / +2
Query: 284 KRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYHISRGKELISS 463
KRH+HFLALQL LK MKVLDVGCGIGGPL EIARFS TSITGLNNN Y ISRGKEL
Sbjct: 2 KRHEHFLALQLCLKPAMKVLDVGCGIGGPLREIARFSRTSITGLNNNAYQISRGKELNRE 181
Query: 464 AGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHAPDAQGVYSEVYRVLKP 619
GL + C F+KGDFM MP S++TFDA YAI+ATCHAPDA G Y E+ RVLKP
Sbjct: 182 CGLDKSCDFVKGDFMKMPFSNDTFDAVYAIEATCHAPDAVGCYKEIKRVLKP 337
Score = 105 bits (225), Expect = 2e-022
Identities = 53/108 (49%), Positives = 65/108 (60%)
Frame = -2 / -2
Query: 618 GFSTR*TSL*TPCASGXXXXXXXXXXASKVLSDIGMSMKSPFKKQHCSLKPAEEMSSLPL 439
GFST SL* P ASG ASKV + G+ MKSP K P +SS PL
Sbjct: 336 GFSTLFISL*QPTASGA*QVASIA*TASKVSLEKGIFMKSPLTKSQLLSSPHSLLSSFPL 157
Query: 438 EMW*SLLFSPVIDVELNLAISIKGPPIPHPTSKTFIPFLSPNCSAKKC 295
++ +LLF+PV++V LNLAIS+ GPPIPHPTS TFI + A+KC
Sbjct: 156 DI*YALLFNPVMEVRLNLAISLSGPPIPHPTSNTFIAGFKQS*RARKC 13
>gb|DR168008.1|DR168008 RTPHOS1_22_C11.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_22_C11_A029 5', mRNA sequence
Length = 600
Score = 166 bits (357), Expect = 1e-040
Identities = 67/121 (55%), Positives = 84/121 (69%)
Frame = +2 / +2
Query: 254 YPGETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYH 433
+ GE EA+KR + +LAL+ +K+G KVLD+GCGIGGP+ IARF+ +ITG N N Y
Sbjct: 236 FKGEPYTEALKRQEFYLALRAHMKEGSKVLDIGCGIGGPMRNIARFTGANITGFNLNAYQ 415
Query: 434 ISRGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHAPDAQGVYSEVYRVL 613
+ R EL + AGLS C ++GDFM MP DN+FD Y I+AT HAP GVYSE YRVL
Sbjct: 416 VKRATELNAKAGLSHLCTVVQGDFMKMPFEDNSFDICYEIEATAHAPSKVGVYSEAYRVL 595
Query: 614 K 616
K
Sbjct: 596 K 598
>dbj|BD273093.1| Materials and methods for the modification of isoprenoid content,
compostition and metabolism
Length = 582
Score = 119 bits (255), Expect(3) = 3e-037
Identities = 51/64 (79%), Positives = 54/64 (84%)
Frame = +2 / +1
Query: 254 YPGETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYH 433
+ GET RE+IKRH+HFLAL L LK MKVLDVGCGIGGPL EIARFS TSITGLNNN Y
Sbjct: 391 WKGETLRESIKRHEHFLALHLCLKPAMKVLDVGCGIGGPLREIARFSRTSITGLNNNAYQ 570
Query: 434 ISRG 445
ISRG
Sbjct: 571 ISRG 582
Score = 42.8 bits (87), Expect(3) = 3e-037
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = +3 / +1
Query: 114 GALQLARSTGGSISKDQVKSAVDQYVKYHV 203
GAL LA GG+I K+Q+ +AV++Y KYH+
Sbjct: 178 GALDLASGMGGNIEKEQMLTAVEEYEKYHM 267
Score = 30.9 bits (61), Expect(3) = 3e-037
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1 / +1
Query: 208 HGGKQESRKSNYTDLIS 258
+GG + SRKSNYTD+++
Sbjct: 271 YGGDEGSRKSNYTDMVN 321
>gb|DR088681.1|DR088681 RTAL1_3_F02.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_3_F02_A029 5', mRNA sequence
Length = 661
Score = 114 bits (244), Expect(2) = 5e-037
Identities = 42/85 (49%), Positives = 59/85 (69%)
Frame = +2 / +2
Query: 260 GETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYHIS 439
GE ++ RH+H+LAL++GLK GM+VLDVGCG+GGP EI+RF+ + GLNNN + +
Sbjct: 245 GEAFNASLARHEHYLALRMGLKPGMRVLDVGCGVGGPAREISRFADVDVVGLNNNAFQVG 424
Query: 440 RGKELISSAGLSEQCCFLKGDFMDM 514
R + L +Q F+KGDFMD+
Sbjct: 425 RATKYAKEINLQDQVRFVKGDFMDL 499
Score = 59.7 bits (124), Expect(2) = 5e-037
Identities = 20/32 (62%), Positives = 28/32 (87%)
Frame = +2 / +2
Query: 524 DNTFDAAYAIQATCHAPDAQGVYSEVYRVLKP 619
+N+FDA YAI+ATCHAP +GVY ++++VLKP
Sbjct: 515 ENSFDAVYAIEATCHAPTWEGVYGQIFKVLKP 610
>gb|CF479172.1|CF479172 RTWW3_24_C04.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_24_C04_A022 5', mRNA sequence
Length = 664
Score = 146 bits (314), Expect = 1e-034
Identities = 57/120 (47%), Positives = 81/120 (67%)
Frame = +2 / +3
Query: 260 GETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYHIS 439
G++ +E + H+ +A L +K G +VLD GCG+GGP+ IA S +I G+ NDY +
Sbjct: 165 GKSHKEETRMHEERVADLLSMKPGDRVLDAGCGVGGPMRAIAAHSGANIVGITINDYQVE 344
Query: 440 RGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHAPDAQGVYSEVYRVLKP 619
R + AGL C + G+F+ MP +DN+FDAAY+I+ATCHAP+ Q VY+E+YRVLKP
Sbjct: 345 RARSHNKKAGLDRLCEVVCGNFLKMPFADNSFDAAYSIEATCHAPELQDVYAEIYRVLKP 524
>gb|DN460009.1|DN460009 EST955808 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHT54 5' end, mRNA sequence
Length = 905
Score = 146 bits (314), Expect = 1e-034
Identities = 57/120 (47%), Positives = 81/120 (67%)
Frame = +2 / +1
Query: 260 GETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYHIS 439
G++ +E + H+ +A L +K G +VLD GCG+GGP+ IA S +I G+ NDY +
Sbjct: 337 GKSHKEETRMHEERVADLLSMKPGDRVLDAGCGVGGPMRAIAAHSGANIVGITINDYQVE 516
Query: 440 RGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHAPDAQGVYSEVYRVLKP 619
R + AGL C + G+F+ MP +DN+FDAAY+I+ATCHAP+ Q VY+E+YRVLKP
Sbjct: 517 RARSHNKKAGLDRLCEVVCGNFLKMPFADNSFDAAYSIEATCHAPELQDVYAEIYRVLKP 696
>gb|DN461652.1|DN461652 EST957451 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIIC81 5' end, mRNA sequence
Length = 923
Score = 146 bits (314), Expect = 1e-034
Identities = 57/120 (47%), Positives = 81/120 (67%)
Frame = +2 / +3
Query: 260 GETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYHIS 439
G++ +E + H+ +A L +K G +VLD GCG+GGP+ IA S +I G+ NDY +
Sbjct: 138 GKSHKEETRMHEERVADLLSMKPGDRVLDAGCGVGGPMRAIAAHSGANIVGITINDYQVE 317
Query: 440 RGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHAPDAQGVYSEVYRVLKP 619
R + AGL C + G+F+ MP +DN+FDAAY+I+ATCHAP+ Q VY+E+YRVLKP
Sbjct: 318 RARSHNKKAGLDRLCEVVCGNFLKMPFADNSFDAAYSIEATCHAPELQDVYAEIYRVLKP 497
>gb|DN464524.1|DN464524 EST960323 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIJD20 5' end, mRNA sequence
Length = 921
Score = 146 bits (314), Expect = 1e-034
Identities = 57/120 (47%), Positives = 81/120 (67%)
Frame = +2 / +3
Query: 260 GETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYHIS 439
G++ +E + H+ +A L +K G +VLD GCG+GGP+ IA S +I G+ NDY +
Sbjct: 411 GKSHKEETRMHEERVADLLSMKPGDRVLDAGCGVGGPMRAIAAHSGANIVGITINDYQVE 590
Query: 440 RGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHAPDAQGVYSEVYRVLKP 619
R + AGL C + G+F+ MP +DN+FDAAY+I+ATCHAP+ Q VY+E+YRVLKP
Sbjct: 591 RARSHNKKAGLDRLCEVVCGNFLKMPFADNSFDAAYSIEATCHAPELQDVYAEIYRVLKP 770
>gb|BX679115.1|BX679115 BX679115 RS Pinus pinaster cDNA clone RS20A4, mRNA sequence
Length = 627
Score = 144 bits (308), Expect = 7e-034
Identities = 56/120 (46%), Positives = 79/120 (65%)
Frame = +2 / +3
Query: 260 GETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYHIS 439
G +RE + H+ +A L +K G +VLD GCG+GGP+ IA S ++ G+ NDY +
Sbjct: 30 GNPTREETRMHEERVADLLSMKPGDRVLDAGCGVGGPMRAIAAHSGANVVGITINDYQVE 209
Query: 440 RGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHAPDAQGVYSEVYRVLKP 619
R + A L C + G+F+ MP +DN+FDAAY+I+ATCHAP+ Q VY+E+YRVLKP
Sbjct: 210 RARSHNKKAXLDRLCEVVCGNFLKMPFADNSFDAAYSIEATCHAPELQDVYAEIYRVLKP 389
>gb|CF388646.1|CF388646 RTDR2_4_H02.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_4_H02_A021 5', mRNA
sequence
Length = 686
Score = 141 bits (302), Expect = 5e-033
Identities = 55/112 (49%), Positives = 76/112 (67%)
Frame = +2 / +1
Query: 284 KRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYHISRGKELISS 463
+ H+ +A L +K G +VLD GCG+GGP+ IA S +I G+ NDY + R +
Sbjct: 1 RMHEERVADLLSMKPGDRVLDAGCGVGGPMRAIAAHSGANIVGITINDYQVERARSHNKK 180
Query: 464 AGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHAPDAQGVYSEVYRVLKP 619
AGL C + G+F+ MP +DN+FDAAY+I+ATCHAP+ Q VY+E+YRVLKP
Sbjct: 181 AGLDRLCEVVCGNFLKMPFADNSFDAAYSIEATCHAPELQDVYAEIYRVLKP 336
>gb|CF387574.1|CF387574 RTDR1_20_C08.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_20_C08_A015 5', mRNA
sequence
Length = 765
Score = 139 bits (299), Expect = 1e-032
Identities = 54/112 (48%), Positives = 76/112 (67%)
Frame = +2 / +1
Query: 284 KRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYHISRGKELISS 463
+ H+ ++ L +K G +VLD GCG+GGP+ IA S +I G+ NDY + R +
Sbjct: 4 RMHEERVSDLLSMKPGDRVLDAGCGVGGPMRAIAAHSGANIVGITINDYQVERARSHNKK 183
Query: 464 AGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHAPDAQGVYSEVYRVLKP 619
AGL C + G+F+ MP +DN+FDAAY+I+ATCHAP+ Q VY+E+YRVLKP
Sbjct: 184 AGLDRLCEVVCGNFLKMPFADNSFDAAYSIEATCHAPELQDVYAEIYRVLKP 339
>gb|CO198411.1|CO198411 GEO1_13_B02.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_13_B02_A029 5', mRNA sequence
Length = 670
Score = 113 bits (241), Expect(2) = 8e-029
Identities = 44/88 (50%), Positives = 59/88 (67%)
Frame = +2 / +2
Query: 260 GETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYHIS 439
GE AI RH+H+LA +G+K GMKVLDVGCG+GGP EI +F+ +TGLN N+Y +
Sbjct: 368 GEDFNRAIARHEHYLAHNIGIKPGMKVLDVGCGVGGPAREIVKFTGAHVTGLNLNEYQVQ 547
Query: 440 RGKELISSAGLSEQCCFLKGDFMDMPIS 523
R GLS++ F++GDF + PIS
Sbjct: 548 RATIYAEKEGLSDKLRFIQGDFYENPIS 631
Score = 33.6 bits (67), Expect(2) = 8e-029
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2 / +3
Query: 503 FMDMPISDNTFDAAYAIQA 559
FM +P DN+FDA YAI+A
Sbjct: 612 FMKIPFPDNSFDAVYAIEA 668
>gb|CF672887.1|CF672887 RTCNT1_74_D06.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_74_D06_A029 5', mRNA sequence
Length = 740
Score = 85.8 bits (181), Expect(2) = 4e-027
Identities = 35/71 (49%), Positives = 49/71 (69%)
Frame = +2 / +3
Query: 263 ETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITGLNNNDYHISR 442
E+ ++ R + ++AL+L L KGM+VLDVGCGIGGP IARFS +I GLNNN Y + R
Sbjct: 258 ESFEASVSRLEFYVALKLKLDKGMRVLDVGCGIGGPARAIARFSQATIIGLNNNSYQLQR 437
Query: 443 GKELISSAGLS 475
+++ A L+
Sbjct: 438 CRDITKEARLT 470
Score = 55.6 bits (115), Expect(2) = 4e-027
Identities = 21/44 (47%), Positives = 31/44 (70%)
Frame = +2 / +3
Query: 488 FLKGDFMDMPISDNTFDAAYAIQATCHAPDAQGVYSEVYRVLKP 619
+L+GDF +P +DN+ DA ++ +A HAP VY E++RVLKP
Sbjct: 480 WLQGDFHHIPAADNSLDAGFSFEAIEHAPQKVVVYKELFRVLKP 611
>gb|DR015808.1|DR015808 STRS1_5_F05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_F05_A034 5', mRNA sequence
Length = 725
Score = 102 bits (217), Expect(2) = 5e-025
Identities = 39/78 (50%), Positives = 53/78 (67%)
Frame = +2 / +3
Query: 386 RFSSTSITGLNNNDYHISRGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATC 565
R +I G+ NDY + R + AGL C + G+F+ MP +DN+FDAAY+I+ATC
Sbjct: 66 RTRGANIVGITINDYQVERARSHNKKAGLDRLCEVVCGNFLKMPFADNSFDAAYSIEATC 245
Query: 566 HAPDAQGVYSEVYRVLKP 619
HAP+ Q VY+E+YRVLKP
Sbjct: 246 HAPELQDVYAEIYRVLKP 299
Score = 31.8 bits (63), Expect(2) = 5e-025
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2 / +2
Query: 323 KKGMKVLDVGCGIGGPLIEIARFS 394
K G +VLD G G+GGP+ IA S
Sbjct: 2 KPGDRVLDAGFGVGGPMRAIAAHS 73
>gb|CX713935.1|CX713935 RTPQ1_15_D05.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_15_D05_A032 3', mRNA sequence
Length = 800
Score = 98.7 bits (209), Expect(2) = 1e-023
Identities = 42/53 (79%), Positives = 45/53 (84%)
Frame = +2 / +2
Query: 254 YPGETSREAIKRHQHFLALQLGLKKGMKVLDVGCGIGGPLIEIARFSSTSITG 412
+ GET RE+IKRH+HFLAL L LK MKVLDVGCGIGGPL EIARFS TSITG
Sbjct: 641 WKGETLRESIKRHEHFLALHLCLKPAMKVLDVGCGIGGPLREIARFSRTSITG 799
Score = 30.9 bits (61), Expect(2) = 1e-023
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1 / +2
Query: 208 HGGKQESRKSNYTDLIS 258
+GG + SRKSNYTD+++
Sbjct: 521 YGGDEGSRKSNYTDMVN 571
>gb|CO409265.1|CO409265 EST839650 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAKN56 5' end, mRNA sequence
Length = 880
Score = 101 bits (216), Expect = 4e-021
Identities = 38/76 (50%), Positives = 53/76 (69%)
Frame = +2 / +1
Query: 392 SSTSITGLNNNDYHISRGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHA 571
+ +I G+ NDY + R + AGL C + G+F+ MP +DN+FDAAY+I+ATCHA
Sbjct: 4 AGANIVGITINDYQVERARSHNKKAGLDRLCEVVCGNFLKMPFADNSFDAAYSIEATCHA 183
Query: 572 PDAQGVYSEVYRVLKP 619
P+ Q VY+E+YRVLKP
Sbjct: 184 PELQDVYAEIYRVLKP 231
>gb|CO409454.1|CO409454 EST839839 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAKQ13 5' end, mRNA sequence
Length = 925
Score = 101 bits (216), Expect = 4e-021
Identities = 38/76 (50%), Positives = 53/76 (69%)
Frame = +2 / +1
Query: 392 SSTSITGLNNNDYHISRGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHA 571
+ +I G+ NDY + R + AGL C + G+F+ MP +DN+FDAAY+I+ATCHA
Sbjct: 4 AGANIVGITINDYQVERARSHNKKAGLDRLCEVVCGNFLKMPFADNSFDAAYSIEATCHA 183
Query: 572 PDAQGVYSEVYRVLKP 619
P+ Q VY+E+YRVLKP
Sbjct: 184 PELQDVYAEIYRVLKP 231
>gb|DN446266.1|DN446266 EST942065 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIBF77 5' end, mRNA sequence
Length = 924
Score = 101 bits (216), Expect = 4e-021
Identities = 38/76 (50%), Positives = 53/76 (69%)
Frame = +2 / +1
Query: 392 SSTSITGLNNNDYHISRGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHA 571
+ +I G+ NDY + R + AGL C + G+F+ MP +DN+FDAAY+I+ATCHA
Sbjct: 4 AGANIVGITINDYQVERARSHNKKAGLDRLCEVVCGNFLKMPFADNSFDAAYSIEATCHA 183
Query: 572 PDAQGVYSEVYRVLKP 619
P+ Q VY+E+YRVLKP
Sbjct: 184 PELQDVYAEIYRVLKP 231
>gb|DT625515.1|DT625515 EST1157439 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA079 5' end, mRNA sequence
Length = 902
Score = 101 bits (216), Expect = 4e-021
Identities = 38/76 (50%), Positives = 53/76 (69%)
Frame = +2 / +1
Query: 392 SSTSITGLNNNDYHISRGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHA 571
+ +I G+ NDY + R + AGL C + G+F+ MP +DN+FDAAY+I+ATCHA
Sbjct: 4 AGANIVGITINDYQVERARSHNKKAGLDRLCEVVCGNFLKMPFADNSFDAAYSIEATCHA 183
Query: 572 PDAQGVYSEVYRVLKP 619
P+ Q VY+E+YRVLKP
Sbjct: 184 PELQDVYAEIYRVLKP 231
>gb|DT624374.1|DT624374 EST1158649 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAD91 5' end, mRNA sequence
Length = 854
Score = 101 bits (215), Expect = 5e-021
Identities = 38/73 (52%), Positives = 52/73 (71%)
Frame = +2 / +1
Query: 401 SITGLNNNDYHISRGKELISSAGLSEQCCFLKGDFMDMPISDNTFDAAYAIQATCHAPDA 580
+I G+ NDY + R + AGL C + G+F+ MP +DN+FDAAY+I+ATCHAP+
Sbjct: 1 NIVGITINDYQVERARSHNKKAGLDRLCEVVCGNFLKMPFADNSFDAAYSIEATCHAPEL 180
Query: 581 QGVYSEVYRVLKP 619
Q VY+E+YRVLKP
Sbjct: 181 QDVYAEIYRVLKP 219
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 351,021,893
Number of Sequences: 355925
Number of extensions: 5026170
Number of successful extensions: 49976
Number of sequences better than 1.0e-020: 28
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 8358129780
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)