TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748394.2.2
(3527 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR687879.1|DR687879 EST1077962 Normalized pine embryo li... 473 e-132
gb|DN610972.1|DN610972 EST964022 Subtracted pine embryo lib... 325 e-118
gb|DT627908.1|DT627908 EST1156657 Subtracted pine embryo li... 325 e-118
emb|AJ309090.1|PPI309090 Pinus pinaster partial mRNA for pu... 273 8e-098
gb|CO197733.1|CO197733 GEO1_8_E04.g1_A029 Root gravitropism... 315 2e-096
gb|DN609701.1|DN609701 EST962751 Subtracted pine embryo lib... 322 8e-087
dbj|BD236456.1| Materials and method for modification of pl... 216 3e-063
gb|DR687633.1|DR687633 EST1077715 Normalized pine embryo li... 195 4e-058
gb|DT634393.1|DT634393 EST1149324 Normalized pine embryo li... 195 4e-058
dbj|BD236453.1| Materials and method for modification of pl... 140 1e-056
gb|DR057730.1|DR057730 RTNIT1_7_B04.g1_A029 Roots minus nit... 158 8e-041
gb|DR057381.1|DR057381 RTNIT1_5_B04.g1_A029 Roots minus nit... 158 1e-040
dbj|BD236454.1| Materials and method for modification of pl... 131 1e-039
gb|CO366556.1|CO366556 RTK1_28_C09.g1_A029 Roots minus pota... 158 8e-039
gb|CO197674.1|CO197674 GEO1_8_E04.b1_A029 Root gravitropism... 158 3e-037
gb|DR110696.1|DR110696 RTS1_12_H11.b1_A029 Roots minus sulf... 158 3e-037
gb|DR110783.1|DR110783 RTS1_12_H11.g1_A029 Roots minus sulf... 158 3e-037
gb|CX648692.1|CX648692 COLD1_30_F12.b1_A029 Root cold Pinus... 141 3e-032
gb|CX651090.1|CX651090 COLD1_50_C05.b1_A029 Root cold Pinus... 141 3e-032
gb|CX715653.1|CX715653 RTPQ1_35_D08.g1_A032 Roots treated w... 141 3e-032
gb|DR168855.1|DR168855 RTPHOS1_28_G05.b1_A029 Roots minus p... 141 3e-032
gb|DR089646.1|DR089646 RTAL1_10_B02.b1_A029 Roots plus adde... 140 5e-032
dbj|BD236455.1| Materials and method for modification of pl... 87 3e-031
gb|CX651163.1|CX651163 COLD1_50_C05.g1_A029 Root cold Pinus... 130 7e-029
gb|CX648762.1|CX648762 COLD1_30_F12.g1_A029 Root cold Pinus... 128 3e-028
gb|CX646807.1|CX646807 COLD1_11_D10.g1_A029 Root cold Pinus... 72 1e-025
gb|DR097105.1|DR097105 STRR1_32_C03.g1_A033 Stem Response R... 72 1e-024
gb|DR070028.1|DR070028 RTDK1_10_G09.g1_A029 Roots, dark Pin... 72 1e-024
gb|DR169398.1|DR169398 RTPHOS1_32_D06.b1_A029 Roots minus p... 69 8e-023
gb|CX713086.1|CX713086 RTPQ1_6_H09.g1_A032 Roots treated wi... 65 1e-022
dbj|BD236026.1| Materials and method for modification of pl... 68 1e-022
gb|BX255621.1|BX255621 BX255621 Pinus pinaster differenciat... 64 1e-021
gb|AW043393.1|AW043393 ST32H03 Pine TriplEx shoot tip libra... 103 4e-021
gb|BE209183.1|BE209183 NXNV_147_A11_F Nsf Xylem Normal wood... 65 5e-021
gb|BX252531.1|BX252531 BX252531 Pinus pinaster differenciat... 68 7e-021
>gb|DR687879.1|DR687879 EST1077962 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABX65 3' end, mRNA sequence
Length = 746
Score = 473 bits (1028), Expect = e-132
Identities = 192/243 (79%), Positives = 214/243 (88%)
Frame = +1 / +2
Query: 1561 TNPHKPMILALSRPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDDMSAGNASVL 1740
TN HKPMILALSRPDPKKN+TTLVKAFGECRPL+ELANLTL+MGNRDDID+MS GNA+VL
Sbjct: 2 TNRHKPMILALSRPDPKKNLTTLVKAFGECRPLKELANLTLVMGNRDDIDEMSGGNAAVL 181
Query: 1741 TTVLKLIDKYDLYGSVAFPKHHNQADVPEIYRLAAKMKGVFINPALVEPFGLTLIEAAAH 1920
TTVLKLIDKYDLYG VA+PKHH Q+DVP+IYRLAAK KGVFINPALVEPFGLTLIEAAA+
Sbjct: 182 TTVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPALVEPFGLTLIEAAAY 361
Query: 1921 GLPIVATKNGGPVDITNALNNGLLVDPHDQNAIADALLKLVADKNLWQECRRNGLRNIHL 2100
GLP+VATKNGGPVDI + L NGLLVDPHDQ AIA+ALL+LV DKNLW ECRRNGLRNIHL
Sbjct: 362 GLPMVATKNGGPVDIHSTLTNGLLVDPHDQKAIANALLELVTDKNLWNECRRNGLRNIHL 541
Query: 2101 YSWPEHCRTYLTRVAGCRLRNPRWLKDTPADAGADEEEFLEDSMDAQDLSLRLSIDGEKS 2280
+SWPEHCR YL+RV CR+R+P+W DT D DEE + D QD+SLRLS+DGEK
Sbjct: 542 FSWPEHCRKYLSRVDVCRMRHPQWQTDTLMDTTMDEESMGDSLKDVQDMSLRLSVDGEKY 721
Query: 2281 SLN 2289
S+N
Sbjct: 722 SVN 730
Score = 269 bits (582), Expect = 8e-071
Identities = 125/200 (62%), Positives = 140/200 (70%)
Frame = -1 / -3
Query: 2171 HLGFLNRHPATLVR*VRQCSGHE*RWMLRSPFLRHSCHRXXXXXXXXXXXXXXXXSCGST 1992
H G L H +T + QCSGHE R M +P RHS HR S GST
Sbjct: 612 H*GCLILHTSTRDKYFLQCSGHEKR*MFLNPLRRHSFHRFLSVTSSSNAFAMAF*SWGST 433
Query: 1991 SSPLFNAFVMSTGPPFLVATIGSPCAAASIRVRPNGSTRAGLMKTPFILAARR*ISGTSA 1812
+SPL MSTGPPF VATIG P AAAS+RVRP GSTRAGL+ TPF+ AARR*ISGTS
Sbjct: 432 NSPLVKVLCMSTGPPFFVATIGKPYAAASMRVRPKGSTRAGLINTPFVFAARR*ISGTSD 253
Query: 1811 *L*CLGNATLPYRSYLSISFRTVVRTLALPADMSSMSSLLPMIRVRFASSLSGRHSPNAL 1632
L*C G AT PY+SYLSISF+TVVRT ALP D+SS+SSL P+ V+FASS +GRHSPNAL
Sbjct: 252 CL*CFG*ATCPYKSYLSISFKTVVRTAALPPDISSISSLFPITSVKFASSFNGRHSPNAL 73
Query: 1631 TRVVMFFFGSGLDNARIIGL 1572
TRVV FF GSG D ARI+GL
Sbjct: 72 TRVVRFFLGSGRDKARIMGL 13
Score = 138 bits (297), Expect = 2e-031
Identities = 67/191 (35%), Positives = 122/191 (63%)
Frame = -3 / -2
Query: 2136 GEVSAAVLRP*VEVDVAQPVSPAFLPQVLVCHKLQQCISDGVLVVWVNEQSVV*CICNVD 1957
G++ +A+LRP* +V+V+QP++ F+P V VC++L QCI G+L++ ++ S+ V
Sbjct: 577 GQIFSAMLRP*KKVNVSQPITATFIP*VFVCYEL*QCICYGLLIMGID**SIGQSTVYVH 398
Query: 1956 RTTILGSDYRESVCRSLDQGETKRLNESRVDEDALHFGREAIDLRDVSLIVMLRERHASV 1777
++IL S +R ++ L++ ETKR ++S +++ L F + +++ ++ L+VML + +
Sbjct: 397 WSSILRSYHR*TIRSCLNESETKRFHQSWINKHTLCFCSKTVNIWNI*LLVMLWISNLPI 218
Query: 1776 QIILVNQLQNCGEDTGIASRHVVDVISVTHDQSKVCKFPEWTTLSKRFDEGSDVLLRVWS 1597
Q+IL+ QLQN ++ I SRH + +ISV+H ++C+ W SKRFD S++ + S
Sbjct: 217 QVILIYQLQNRC*NSCITSRHFIYIISVSHY*CQICQLF*WPAFSKRFD*SSEIFFGIRS 38
Query: 1596 **RQDHRLVRV 1564
** ++H V +
Sbjct: 37 **SKNHGFVPI 5
>gb|DN610972.1|DN610972 EST964022 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAW26, mRNA sequence
Length = 689
Score = 325 bits (704), Expect(2) = e-118
Identities = 131/151 (86%), Positives = 144/151 (95%)
Frame = +1 / +1
Query: 1513 SPKSMPPIWAEVMRFLTNPHKPMILALSRPDPKKNITTLVKAFGECRPLRELANLTLIMG 1692
SPK++PPIW+EVMRF TN HKPMILALSRPDPKKN+TTLVKAFGECRPL+ELANLTL+MG
Sbjct: 232 SPKALPPIWSEVMRFFTNRHKPMILALSRPDPKKNLTTLVKAFGECRPLKELANLTLVMG 411
Query: 1693 NRDDIDDMSAGNASVLTTVLKLIDKYDLYGSVAFPKHHNQADVPEIYRLAAKMKGVFINP 1872
NRDDID+MS GNA+VLTTVLKLIDKYDLYG VA+PKHH Q+DVP+IYRLAAK KGV INP
Sbjct: 412 NRDDIDEMSGGNAAVLTTVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVLINP 591
Query: 1873 ALVEPFGLTLIEAAAHGLPIVATKNGGPVDI 1965
ALVEPFGLTLIEAAA+GLP+VATKNGGPVDI
Sbjct: 592 ALVEPFGLTLIEAAAYGLPMVATKNGGPVDI 684
Score = 241 bits (521), Expect(2) = 2e-080
Identities = 108/151 (71%), Positives = 122/151 (80%)
Frame = -1 / -1
Query: 1964 MSTGPPFLVATIGSPCAAASIRVRPNGSTRAGLMKTPFILAARR*ISGTSA*L*CLGNAT 1785
MSTGPPF VATIG P AAAS+RVRP GSTRAGL+ TPF+ AARR*ISGTS L*C G AT
Sbjct: 683 MSTGPPFFVATIGKPYAAASMRVRPKGSTRAGLISTPFVFAARR*ISGTSDCL*CFG*AT 504
Query: 1784 LPYRSYLSISFRTVVRTLALPADMSSMSSLLPMIRVRFASSLSGRHSPNALTRVVMFFFG 1605
PY+SYLSISF+TVVRT ALP D+SS+SSL P+ V+FASS +GRHSPNALTRVV FF G
Sbjct: 503 CPYKSYLSISFKTVVRTAALPPDISSISSLFPITSVKFASSFNGRHSPNALTRVVRFFLG 324
Query: 1604 SGLDNARIIGL*GLVRNRITSAQIGGIDLGE 1512
SG D ARI+GL V+ RITS +GG LG+
Sbjct: 323 SGRDKARIMGLCRFVKKRITSDHMGGKALGD 231
Score = 122 bits (262), Expect(2) = e-118
Identities = 48/55 (87%), Positives = 53/55 (96%)
Frame = +1 / +1
Query: 1288 TRQEIDEQWGLYDGFDVKLEKVLRARARRGVSCHGRYMPRMVVIPPGMDFSNVVV 1452
T+QEI EQWGLYDGFDV+LEK+LRARA+R VSCHGR+MPRMVVIPPGMDFSNVVV
Sbjct: 1 TKQEIVEQWGLYDGFDVRLEKILRARAKRQVSCHGRFMPRMVVIPPGMDFSNVVV 165
Score = 101 bits (216), Expect(2) = 2e-030
Identities = 47/139 (33%), Positives = 86/139 (61%)
Frame = -3 / -3
Query: 1953 TTILGSDYRESVCRSLDQGETKRLNESRVDEDALHFGREAIDLRDVSLIVMLRERHASVQ 1774
++IL S +R ++ L++ ETKR ++S +++ L F + +++ ++ L+VML + +Q
Sbjct: 672 SSILRSYHR*TIRSCLNESETKRFHQSWINKHTLCFCSKTVNIWNI*LLVMLWISNLPIQ 493
Query: 1773 IILVNQLQNCGEDTGIASRHVVDVISVTHDQSKVCKFPEWTTLSKRFDEGSDVLLRVWS* 1594
+I + QLQN ++ I SRH + +ISV+H ++C+ W SKRFD S++ + S*
Sbjct: 492 VIFIYQLQNRC*NSCITSRHFIYIISVSHY*CQICQLF*WPAFSKRFD*SSEIFFGIRS* 313
Query: 1593 *RQDHRLVRVGQEPHHFGP 1537
* ++H V + ++ HH GP
Sbjct: 312 *SKNHGFVPICEKTHHLGP 256
Score = 81.3 bits (171), Expect(2) = 2e-080
Identities = 34/44 (77%), Positives = 36/44 (81%)
Frame = -1 / -1
Query: 1424 GGITTILGM*RPWQLTPRLARALSTFSSLTSNPSYNPHCSSISC 1293
GGITTI GM RPWQLT R ARAL FSSLTS PS +PHCS+ISC
Sbjct: 137 GGITTIRGMNRPWQLTCRFARALKIFSSLTSKPS*SPHCSTISC 6
Score = 53.3 bits (110), Expect(2) = 2e-030
Identities = 24/55 (43%), Positives = 33/55 (60%)
Frame = -3 / -3
Query: 1452 NYNIAEIHSRRNHHHPRHVTTMAANPAPRPCPQHFLKLDIKSIVQSPLLINLLPC 1288
N IAE+H+ R +HH H TMA + + Q+ K DIK+I++ PLL N L C
Sbjct: 165 NNYIAEVHTGRYNHHSGHEPTMATHLSLCTGSQNLFKSDIKTIIEPPLLHNFLLC 1
>gb|DT627908.1|DT627908 EST1156657 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMCS08 5' end, mRNA sequence
Length = 690
Score = 325 bits (704), Expect(2) = e-118
Identities = 131/151 (86%), Positives = 144/151 (95%)
Frame = +1 / -1
Query: 1513 SPKSMPPIWAEVMRFLTNPHKPMILALSRPDPKKNITTLVKAFGECRPLRELANLTLIMG 1692
SPK++PPIW+EVMRF TN HKPMILALSRPDPKKN+TTLVKAFGECRPL+ELANLTL+MG
Sbjct: 459 SPKALPPIWSEVMRFFTNRHKPMILALSRPDPKKNLTTLVKAFGECRPLKELANLTLVMG 280
Query: 1693 NRDDIDDMSAGNASVLTTVLKLIDKYDLYGSVAFPKHHNQADVPEIYRLAAKMKGVFINP 1872
NRDDID+MS GNA+VLTTVLKLIDKYDLYG VA+PKHH Q+DVP+IYRLAAK KGV INP
Sbjct: 279 NRDDIDEMSGGNAAVLTTVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVLINP 100
Query: 1873 ALVEPFGLTLIEAAAHGLPIVATKNGGPVDI 1965
ALVEPFGLTLIEAAA+GLP+VATKNGGPVDI
Sbjct: 99 ALVEPFGLTLIEAAAYGLPMVATKNGGPVDI 7
Score = 241 bits (521), Expect(2) = 2e-080
Identities = 108/151 (71%), Positives = 122/151 (80%)
Frame = -1 / +2
Query: 1964 MSTGPPFLVATIGSPCAAASIRVRPNGSTRAGLMKTPFILAARR*ISGTSA*L*CLGNAT 1785
MSTGPPF VATIG P AAAS+RVRP GSTRAGL+ TPF+ AARR*ISGTS L*C G AT
Sbjct: 8 MSTGPPFFVATIGKPYAAASMRVRPKGSTRAGLISTPFVFAARR*ISGTSDCL*CFG*AT 187
Query: 1784 LPYRSYLSISFRTVVRTLALPADMSSMSSLLPMIRVRFASSLSGRHSPNALTRVVMFFFG 1605
PY+SYLSISF+TVVRT ALP D+SS+SSL P+ V+FASS +GRHSPNALTRVV FF G
Sbjct: 188 CPYKSYLSISFKTVVRTAALPPDISSISSLFPITSVKFASSFNGRHSPNALTRVVRFFLG 367
Query: 1604 SGLDNARIIGL*GLVRNRITSAQIGGIDLGE 1512
SG D ARI+GL V+ RITS +GG LG+
Sbjct: 368 SGRDKARIMGLCRFVKKRITSDHMGGKALGD 460
Score = 122 bits (262), Expect(2) = e-118
Identities = 48/55 (87%), Positives = 53/55 (96%)
Frame = +1 / -1
Query: 1288 TRQEIDEQWGLYDGFDVKLEKVLRARARRGVSCHGRYMPRMVVIPPGMDFSNVVV 1452
T+QEI EQWGLYDGFDV+LEK+LRARA+R VSCHGR+MPRMVVIPPGMDFSNVVV
Sbjct: 690 TKQEIVEQWGLYDGFDVRLEKILRARAKRQVSCHGRFMPRMVVIPPGMDFSNVVV 526
Score = 101 bits (216), Expect(2) = 2e-030
Identities = 47/139 (33%), Positives = 86/139 (61%)
Frame = -3 / +1
Query: 1953 TTILGSDYRESVCRSLDQGETKRLNESRVDEDALHFGREAIDLRDVSLIVMLRERHASVQ 1774
++IL S +R ++ L++ ETKR ++S +++ L F + +++ ++ L+VML + +Q
Sbjct: 19 SSILRSYHR*TIRSCLNESETKRFHQSWINKHTLCFCSKTVNIWNI*LLVMLWISNLPIQ 198
Query: 1773 IILVNQLQNCGEDTGIASRHVVDVISVTHDQSKVCKFPEWTTLSKRFDEGSDVLLRVWS* 1594
+I + QLQN ++ I SRH + +ISV+H ++C+ W SKRFD S++ + S*
Sbjct: 199 VIFIYQLQNRC*NSCITSRHFIYIISVSHY*CQICQLF*WPAFSKRFD*SSEIFFGIRS* 378
Query: 1593 *RQDHRLVRVGQEPHHFGP 1537
* ++H V + ++ HH GP
Sbjct: 379 *SKNHGFVPICEKTHHLGP 435
Score = 81.3 bits (171), Expect(2) = 2e-080
Identities = 34/44 (77%), Positives = 36/44 (81%)
Frame = -1 / +2
Query: 1424 GGITTILGM*RPWQLTPRLARALSTFSSLTSNPSYNPHCSSISC 1293
GGITTI GM RPWQLT R ARAL FSSLTS PS +PHCS+ISC
Sbjct: 554 GGITTIRGMNRPWQLTCRFARALKIFSSLTSKPS*SPHCSTISC 685
Score = 53.3 bits (110), Expect(2) = 2e-030
Identities = 24/55 (43%), Positives = 33/55 (60%)
Frame = -3 / +1
Query: 1452 NYNIAEIHSRRNHHHPRHVTTMAANPAPRPCPQHFLKLDIKSIVQSPLLINLLPC 1288
N IAE+H+ R +HH H TMA + + Q+ K DIK+I++ PLL N L C
Sbjct: 526 NNYIAEVHTGRYNHHSGHEPTMATHLSLCTGSQNLFKSDIKTIIEPPLLHNFLLC 690
>emb|AJ309090.1|PPI309090 Pinus pinaster partial mRNA for putative sucrose-phosphate synthase
Length = 545
Score = 273 bits (591), Expect(2) = 8e-098
Identities = 111/133 (83%), Positives = 119/133 (89%)
Frame = +1 / +2
Query: 865 DGEGMGESGGAYIVRIPCGPRDKYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGR 1044
DG G GES GAYI+RIPCGPRDKY+ KE LWPY+QEFVDGAL HILNMSK LG+Q G G
Sbjct: 146 DGHGGGESSGAYIIRIPCGPRDKYIPKELLWPYIQEFVDGALGHILNMSKVLGDQAGKGD 325
Query: 1045 PVLPYVIHGHYADAGDVAALLSGALNVPMVLTGHSLGRNKLEQLLKQGRMSKEEIDSTYK 1224
PV PYVIHGHYADAGD AALLSGALNVPMVLTGHSLGRNKLEQLLKQGR SKE+I++TYK
Sbjct: 326 PVWPYVIHGHYADAGDSAALLSGALNVPMVLTGHSLGRNKLEQLLKQGRQSKEDINATYK 505
Query: 1225 IMRRIEGEELALD 1263
IMRRIE EEL+LD
Sbjct: 506 IMRRIEAEELSLD 544
Score = 106 bits (227), Expect(2) = 8e-098
Identities = 43/52 (82%), Positives = 47/52 (90%)
Frame = +1 / +2
Query: 727 YVVELARAMSMMPGVYRVDLFTRQVSSLDVDWSYGEPTEMLCAGSNDGEGMG 882
YVVELARA+SMMPGVYRVDL TRQ+SS DVDWSYGEPTEMLC+GS D +G G
Sbjct: 2 YVVELARALSMMPGVYRVDLLTRQISSPDVDWSYGEPTEMLCSGSYDVDGHG 157
Score = 73.5 bits (154), Expect(2) = 4e-027
Identities = 33/42 (78%), Positives = 36/42 (85%)
Frame = -1 / -3
Query: 851 HNISVGSP*LQSTSRDDT*RVKRSTLYTPGIIDIALASSTTY 726
HNISVGSP*LQSTS ++ RV +ST YTPGIID ALASSTTY
Sbjct: 126 HNISVGSP*LQSTSGEEIWRVSKSTRYTPGIIDNALASSTTY 1
Score = 70.7 bits (148), Expect(2) = 4e-027
Identities = 33/52 (63%), Positives = 35/52 (67%)
Frame = -1 / -3
Query: 1064 IT*GSTGLPFPTCSPRALDMFRICARAPSTNSWR*GHNASFLRYLSRGPHGM 909
IT*G TG P P SP LDMFR+ APSTNS *GHN S YLSRGP G+
Sbjct: 345 IT*GQTGSPLPA*SPSTLDMFRM*PNAPSTNS*M*GHNNSLGIYLSRGPQGI 190
>gb|CO197733.1|CO197733 GEO1_8_E04.g1_A029 Root gravitropism April 2003 test Pinus taeda cDNA
clone GEO1_8_E04_A029 5', mRNA sequence
Length = 642
Score = 315 bits (683), Expect(2) = 2e-096
Identities = 130/167 (77%), Positives = 145/167 (86%)
Frame = +1 / +2
Query: 1531 PIWAEVMRFLTNPHKPMILALSRPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDDID 1710
P+W E+ RFL NP KP+ILAL+RPDPKKN+ TLVKAFGEC LR+LANL LIMGNRDDID
Sbjct: 137 PLWGEIPRFLNNPSKPIILALARPDPKKNMATLVKAFGECIKLRKLANLMLIMGNRDDID 316
Query: 1711 DMSAGNASVLTTVLKLIDKYDLYGSVAFPKHHNQADVPEIYRLAAKMKGVFINPALVEPF 1890
M A +A+VLTTVLKLIDKYDLYG VA+PKHH Q++V +IYR+AAK KGVFINPALVEPF
Sbjct: 317 QMPAASANVLTTVLKLIDKYDLYGEVAYPKHHKQSEVADIYRIAAKTKGVFINPALVEPF 496
Query: 1891 GLTLIEAAAHGLPIVATKNGGPVDITNALNNGLLVDPHDQNAIADAL 2031
GLTLIEAAAHGLP+VATKNGGPVDI LNNGLLVDPH+ IA AL
Sbjct: 497 GLTLIEAAAHGLPMVATKNGGPVDILRTLNNGLLVDPHNDEEIAAAL 637
Score = 216 bits (467), Expect(2) = 4e-062
Identities = 101/157 (64%), Positives = 117/157 (74%)
Frame = -1 / -1
Query: 2000 GSTSSPLFNAFVMSTGPPFLVATIGSPCAAASIRVRPNGSTRAGLMKTPFILAARR*ISG 1821
GST+ PLFN +STGPPF VATIG+PCAAAS+RV+P GST AGL+KTP + AA IS
Sbjct: 606 GSTNKPLFNVRRISTGPPFFVATIGNPCAAASMRVKPKGSTSAGLIKTPLVFAAILYISA 427
Query: 1820 TSA*L*CLGNATLPYRSYLSISFRTVVRTLALPADMSSMSSLLPMIRVRFASSLSGRHSP 1641
TS L*CLG AT PYRSYLSISFRTVV TLAL A + S+SS LPMI ++FAS L+ HSP
Sbjct: 426 TSDCL*CLGYATSPYRSYLSISFRTVVNTLALAAGI*SISSRLPMINIKFASFLNLIHSP 247
Query: 1640 NALTRVVMFFFGSGLDNARIIGL*GLVRNRITSAQIG 1530
ALT+V MFF GSG A+I+G GL +NR S G
Sbjct: 246 KALTKVAMFFLGSGRARAKIMGFEGLFKNRGISPHKG 136
Score = 100 bits (213), Expect(2) = 2e-022
Identities = 49/159 (30%), Positives = 92/159 (57%)
Frame = -3 / -3
Query: 2013 VLVVWVNEQSVV*CICNVDRTTILGSDYRESVCRSLDQGETKRLNESRVDEDALHFGREA 1834
++V+ + +Q+++ N+ R++IL ++R S+C L++ +TK ++ R+D++ L
Sbjct: 619 LVVMGIYQQTIIQRP*NIYRSSILCCNHR*SMCSCLNESQTKGFHQCRIDKNTLSLCSNP 440
Query: 1833 IDLRDVSLIVMLRERHASVQIILVNQLQNCGEDTGIASRHVVDVISVTHDQSKVCKFPEW 1654
I + + L VM R H S+ II VN+L + G+ G H++++IS+ HD +VC+ P++
Sbjct: 439 IYISNF*LFVMFRICHFSI*IIFVNKL*DSGQHIGTCCGHLINIISIAHD*HQVCQLPQF 260
Query: 1653 TTLSKRFDEGSDVLLRVWS**RQDHRLVRVGQEPHHFGP 1537
T +K D VLL + S Q++ L + Q+P P
Sbjct: 259 DTFTKSLD*SGHVLLGIRSSKSQNNGLRGIVQKPWDLTP 143
Score = 60.2 bits (125), Expect(2) = 2e-096
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = +1 / +2
Query: 1375 GVSCHGRYMPRMVVIPPGMDFSNVVVHE 1458
GV +GRYMPRM VIPPGMDFSNVVVH+
Sbjct: 2 GVHSYGRYMPRMSVIPPGMDFSNVVVHD 85
Score = 44.6 bits (91), Expect(2) = 4e-062
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = -3 / -3
Query: 1455 MNYNIAEIHSRRNHHHPRHVTTM 1387
M+YNIAE+HSRR + H RHVTT+
Sbjct: 82 MHYNIAEVHSRRYNRHSRHVTTI 14
Score = 27.6 bits (54), Expect(2) = 2e-022
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2 / -2
Query: 1456 HELQHC*NXXXXXXXXX*ACNDH 1388
H LQHC*+ ACNDH
Sbjct: 83 HALQHC*SPFQEV*PTFEACNDH 15
>gb|DN609701.1|DN609701 EST962751 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAAG13, mRNA sequence
Length = 545
Score = 322 bits (698), Expect = 8e-087
Identities = 130/151 (86%), Positives = 143/151 (94%)
Frame = +1 / +1
Query: 1513 SPKSMPPIWAEVMRFLTNPHKPMILALSRPDPKKNITTLVKAFGECRPLRELANLTLIMG 1692
SPK++PPIW+EVMRF TN HKPMILALSRPDPKKN+TTLVKA GECRPL+ELANLTL+MG
Sbjct: 88 SPKALPPIWSEVMRFFTNRHKPMILALSRPDPKKNLTTLVKALGECRPLKELANLTLVMG 267
Query: 1693 NRDDIDDMSAGNASVLTTVLKLIDKYDLYGSVAFPKHHNQADVPEIYRLAAKMKGVFINP 1872
NRDDID+MS GNA+VLTTVLKLIDKYDLYG VA+PKHH Q+DVP+IYRLAAK KGV INP
Sbjct: 268 NRDDIDEMSGGNAAVLTTVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVLINP 447
Query: 1873 ALVEPFGLTLIEAAAHGLPIVATKNGGPVDI 1965
ALVEPFGLTLIEAAA+GLP+VATKNGGPVDI
Sbjct: 448 ALVEPFGLTLIEAAAYGLPMVATKNGGPVDI 540
Score = 241 bits (521), Expect = 2e-062
Identities = 108/151 (71%), Positives = 122/151 (80%)
Frame = -1 / -1
Query: 1964 MSTGPPFLVATIGSPCAAASIRVRPNGSTRAGLMKTPFILAARR*ISGTSA*L*CLGNAT 1785
MSTGPPF VATIG P AAAS+RVRP GSTRAGL+ TPF+ AARR*ISGTS L*C G AT
Sbjct: 539 MSTGPPFFVATIGKPYAAASMRVRPKGSTRAGLISTPFVFAARR*ISGTSDCL*CFG*AT 360
Query: 1784 LPYRSYLSISFRTVVRTLALPADMSSMSSLLPMIRVRFASSLSGRHSPNALTRVVMFFFG 1605
PY+SYLSISF+TVVRT ALP D+SS+SSL P+ V+FASS +GRHSPNALTRVV FF G
Sbjct: 359 CPYKSYLSISFKTVVRTAALPPDISSISSLFPITSVKFASSFNGRHSPNALTRVVRFFLG 180
Query: 1604 SGLDNARIIGL*GLVRNRITSAQIGGIDLGE 1512
SG D ARI+GL V+ RITS +GG LG+
Sbjct: 179 SGRDKARIMGLCRFVKKRITSDHMGGKALGD 87
>dbj|BD236456.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 464
Score = 216 bits (467), Expect(2) = 3e-063
Identities = 89/121 (73%), Positives = 103/121 (85%)
Frame = +1 / +2
Query: 931 KYLKKEALWPYLQEFVDGALAHILNMSKALGEQVGNGRPVLPYVIHGHYADAGDVAALLS 1110
K + +WPY+ EFVDGAL HILN+SKALG+ +G PV P+VIHGHYADAGD A LLS
Sbjct: 95 KVYSERIVWPYIPEFVDGALGHILNISKALGDLIGEDTPVWPHVIHGHYADAGDAACLLS 274
Query: 1111 GALNVPMVLTGHSLGRNKLEQLLKQGRMSKEEIDSTYKIMRRIEGEELALDASELVITST 1290
GALNVPMVLTGHSLGRNKLEQLLKQG SKE+I++TYKIMRRIE EEL LD++ELV+TST
Sbjct: 275 GALNVPMVLTGHSLGRNKLEQLLKQGLHSKEDINATYKIMRRIEAEELCLDSAELVVTST 454
Query: 1291 R 1293
+
Sbjct: 455 K 457
Score = 48.3 bits (99), Expect(2) = 3e-063
Identities = 18/30 (60%), Positives = 25/30 (83%)
Frame = +1 / +3
Query: 859 SNDGEGMGESGGAYIVRIPCGPRDKYLKKE 948
S+ + + ESGGAYIVRIPCG ++KY++KE
Sbjct: 24 SDQDDDILESGGAYIVRIPCGCKEKYIQKE 113
>gb|DR687633.1|DR687633 EST1077715 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABU74 3' end, mRNA sequence
Length = 797
Score = 195 bits (421), Expect(2) = 4e-058
Identities = 77/159 (48%), Positives = 108/159 (67%)
Frame = +1 / +2
Query: 2833 QDGSGDAVEQDVASSNAHCVAFLIKDPQKVKTVDXXXXXXXXXXXXCHIMYCRNSTRLQV 3012
Q+ + +D SNAHC+A+++KD +V+ VD CH M+CRNST+L V
Sbjct: 281 QEKQERVIFEDAKHSNAHCLAYVVKDSTRVRKVDEFRQRLRMRGLRCHPMFCRNSTQLHV 460
Query: 3013 VPLLASRSQALRYLSVRWGVSVGNMYLITGEHGDTDLEEMLSGLHKTVIVRGVTEKGSEA 3192
+PLLASRSQALRYL VRWG+ V NM++ GE GDTD EEML+GLHKT+I++G ++GSE
Sbjct: 461 IPLLASRSQALRYLFVRWGLDVANMHVFVGETGDTDYEEMLAGLHKTIILKGAVDRGSEK 640
Query: 3193 LVRSPGSYKRDDVVPSETPLAAYTTGELKADEIMRALKQ 3309
L+R GSY+R+D+VPSE+P T + I+ +++
Sbjct: 641 LLRGSGSYQREDIVPSESPNIVSTEAGYSCEAILNEIRK 757
Score = 57.0 bits (118), Expect(2) = 4e-058
Identities = 23/44 (52%), Positives = 30/44 (68%)
Frame = +1 / +2
Query: 2578 KISGFTLSTAMPLSETLQLLQLGKIPATDFDALICGSGSEVYYP 2709
+ +G LSTA+ + E L +L G I +FDALIC SGSE+YYP
Sbjct: 8 RFAGLVLSTALTVDEILGMLNSGNILPHEFDALICSSGSELYYP 139
>gb|DT634393.1|DT634393 EST1149324 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG549 3' end, mRNA sequence
Length = 827
Score = 195 bits (421), Expect(2) = 4e-058
Identities = 77/159 (48%), Positives = 108/159 (67%)
Frame = +1 / +1
Query: 2833 QDGSGDAVEQDVASSNAHCVAFLIKDPQKVKTVDXXXXXXXXXXXXCHIMYCRNSTRLQV 3012
Q+ + +D SNAHC+A+++KD +V+ VD CH M+CRNST+L V
Sbjct: 289 QEKQERVIFEDAKHSNAHCLAYVVKDSTRVRKVDEFRQRLRMRGLRCHPMFCRNSTQLHV 468
Query: 3013 VPLLASRSQALRYLSVRWGVSVGNMYLITGEHGDTDLEEMLSGLHKTVIVRGVTEKGSEA 3192
+PLLASRSQALRYL VRWG+ V NM++ GE GDTD EEML+GLHKT+I++G ++GSE
Sbjct: 469 IPLLASRSQALRYLFVRWGLDVANMHVFVGETGDTDYEEMLAGLHKTIILKGAVDRGSEK 648
Query: 3193 LVRSPGSYKRDDVVPSETPLAAYTTGELKADEIMRALKQ 3309
L+R GSY+R+D+VPSE+P T + I+ +++
Sbjct: 649 LLRGSGSYQREDIVPSESPNIVSTEAGYSCEAILNEIRK 765
Score = 57.0 bits (118), Expect(2) = 4e-058
Identities = 23/44 (52%), Positives = 30/44 (68%)
Frame = +1 / +1
Query: 2578 KISGFTLSTAMPLSETLQLLQLGKIPATDFDALICGSGSEVYYP 2709
+ +G LSTA+ + E L +L G I +FDALIC SGSE+YYP
Sbjct: 16 RFAGLVLSTALTVDEILGMLNSGNILPHEFDALICSSGSELYYP 147
>dbj|BD236453.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 415
Score = 140 bits (301), Expect(3) = 1e-056
Identities = 56/64 (87%), Positives = 62/64 (96%)
Frame = +1 / +2
Query: 1606 PKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDDMSAGNASVLTTVLKLIDKYDLYGS 1785
PKKN+TTLVKAFGECRPL+ELANLTL+MGNRDDID+MS GNA+VLTTVLKLIDKYDLYG
Sbjct: 224 PKKNLTTLVKAFGECRPLKELANLTLVMGNRDDIDEMSGGNAAVLTTVLKLIDKYDLYGQ 403
Query: 1786 VAFP 1797
VA+P
Sbjct: 404 VAYP 415
Score = 113 bits (241), Expect(3) = 5e-033
Identities = 48/64 (75%), Positives = 55/64 (85%)
Frame = -1 / -2
Query: 1796 GNATLPYRSYLSISFRTVVRTLALPADMSSMSSLLPMIRVRFASSLSGRHSPNALTRVVM 1617
G AT PY+SYLSISF+TVVRT ALP D+SS+SSL P+ V+FASS +GRHSPNALTRVV
Sbjct: 414 G*ATCPYKSYLSISFKTVVRTAALPPDISSISSLFPITSVKFASSFNGRHSPNALTRVVR 235
Query: 1616 FFFG 1605
FFFG
Sbjct: 234 FFFG 223
Score = 77.6 bits (163), Expect(3) = 1e-056
Identities = 29/34 (85%), Positives = 32/34 (94%)
Frame = +1 / +1
Query: 1513 SPKSMPPIWAEVMRFLTNPHKPMILALSRPDPKK 1614
SPK++PPIW+EVMRF TN HKPMILALSRPDPKK
Sbjct: 130 SPKALPPIWSEVMRFFTNRHKPMILALSRPDPKK 231
Score = 45.1 bits (92), Expect(3) = 5e-033
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = -1 / -3
Query: 1616 FFFGSGLDNARIIGL*GLVRNRITSAQIGGIDLGE 1512
FF GSG D ARI+GL V+ RITS +GG LG+
Sbjct: 233 FFLGSGRDKARIMGLCRFVKKRITSDHMGGKALGD 129
Score = 43.2 bits (88), Expect(3) = 1e-056
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = +1 / +1
Query: 1402 PRMVVIPPGMDFSNVVV 1452
PRMVVIPPGMDFSNVVV
Sbjct: 13 PRMVVIPPGMDFSNVVV 63
Score = 23.5 bits (45), Expect(3) = 5e-033
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3 / -2
Query: 1452 NYNIAEIHSRRNHHH 1408
N IAE+H+ R +HH
Sbjct: 63 NNYIAEVHTGRYNHH 19
>gb|DR057730.1|DR057730 RTNIT1_7_B04.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_7_B04_A029 5', mRNA sequence
Length = 929
Score = 158 bits (339), Expect(2) = 8e-041
Identities = 62/130 (47%), Positives = 86/130 (66%)
Frame = +1 / +3
Query: 2860 QDVASSNAHCVAFLIKDPQKVKTVDXXXXXXXXXXXXCHIMYCRNSTRLQVVPLLASRSQ 3039
+D +SN HC+A+ +K+ D CH++Y +N +RL+V+PL ASRSQ
Sbjct: 231 EDAEASNFHCLAYQVKNISTAPKADELRRQLRMRGLRCHVIYTQNCSRLRVLPLHASRSQ 410
Query: 3040 ALRYLSVRWGVSVGNMYLITGEHGDTDLEEMLSGLHKTVIVRGVTEKGSEALVRSPGSYK 3219
ALRYL VRWG+ + NMY+ GE GDTD EE++ G+HKT+I++G GSE ++RSP SY
Sbjct: 411 ALRYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHKTLILKGTVVDGSEKMLRSPTSYG 590
Query: 3220 RDDVVPSETP 3249
DV PSE+P
Sbjct: 591 SGDVFPSESP 620
Score = 36.8 bits (74), Expect(2) = 8e-041
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1 / +3
Query: 2620 ETLQLLQLGKIPATDFDALICGSGSEVYYPGTAN 2721
ET+ +LQ I + FDALIC SGS++ Y N
Sbjct: 6 ETISMLQSIGIKVSAFDALICSSGSQLLYTAGDN 107
>gb|DR057381.1|DR057381 RTNIT1_5_B04.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_5_B04_A029 5', mRNA sequence
Length = 829
Score = 158 bits (339), Expect(2) = 1e-040
Identities = 62/130 (47%), Positives = 86/130 (66%)
Frame = +1 / +3
Query: 2860 QDVASSNAHCVAFLIKDPQKVKTVDXXXXXXXXXXXXCHIMYCRNSTRLQVVPLLASRSQ 3039
+D +SN HC+A+ +K+ D CH++Y +N +RL+V+PL ASRSQ
Sbjct: 237 EDAEASNFHCLAYQVKNISTAPKADELRRQLRMRGLRCHVIYTQNCSRLRVLPLHASRSQ 416
Query: 3040 ALRYLSVRWGVSVGNMYLITGEHGDTDLEEMLSGLHKTVIVRGVTEKGSEALVRSPGSYK 3219
ALRYL VRWG+ + NMY+ GE GDTD EE++ G+HKT+I++G GSE ++RSP SY
Sbjct: 417 ALRYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHKTLILKGTVVDGSEKMLRSPTSYG 596
Query: 3220 RDDVVPSETP 3249
DV PSE+P
Sbjct: 597 SGDVFPSESP 626
Score = 36.3 bits (73), Expect(2) = 1e-040
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1 / +3
Query: 2620 ETLQLLQLGKIPATDFDALICGSGSEVYYPGTAN 2721
ET+ +LQ I + FDALIC SGS++ Y N
Sbjct: 12 ETISMLQSIFIKVSAFDALICSSGSQLLYTAGDN 113
>dbj|BD236454.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 299
Score = 131 bits (280), Expect(2) = 1e-039
Identities = 55/73 (75%), Positives = 60/73 (82%)
Frame = +1 / +1
Query: 529 KGDTIGELAPVETTKKKFQRNFSDLTVWSDDNKEKKLYIVLISVHGLVRGENMELGRDSD 708
+G+ P T K+ F RNFSDL VWSDDNK K+LYIVLIS+HGLVRGENMELGRDSD
Sbjct: 79 EGEKADVATPRATPKRAFSRNFSDLQVWSDDNKGKRLYIVLISLHGLVRGENMELGRDSD 258
Query: 709 TGGQVKYVVELAR 747
TGGQVKYVVELAR
Sbjct: 259 TGGQVKYVVELAR 297
Score = 54.7 bits (113), Expect(2) = 1e-039
Identities = 22/32 (68%), Positives = 28/32 (87%)
Frame = +1 / +1
Query: 442 QRISARRKEQEQVRREATEDLAEDLSEGEKGD 537
QR++ RR E+EQ RR+ATED++EDLSEGEK D
Sbjct: 1 QRLAKRRIEREQGRRDATEDMSEDLSEGEKAD 96
>gb|CO366556.1|CO366556 RTK1_28_C09.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_28_C09_A029 5', mRNA sequence
Length = 851
Score = 158 bits (339), Expect(2) = 8e-039
Identities = 62/130 (47%), Positives = 86/130 (66%)
Frame = +1 / -2
Query: 2860 QDVASSNAHCVAFLIKDPQKVKTVDXXXXXXXXXXXXCHIMYCRNSTRLQVVPLLASRSQ 3039
+D +SN HC+A+ +K+ D CH++Y +N +RL+V+PL ASRSQ
Sbjct: 652 EDAEASNFHCLAYQVKNISTAPKADELRRQLRMRGLRCHVIYTQNCSRLRVLPLHASRSQ 473
Query: 3040 ALRYLSVRWGVSVGNMYLITGEHGDTDLEEMLSGLHKTVIVRGVTEKGSEALVRSPGSYK 3219
ALRYL VRWG+ + NMY+ GE GDTD EE++ G+HKT+I++G GSE ++RSP SY
Sbjct: 472 ALRYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHKTLILKGTVVDGSEKMLRSPTSYG 293
Query: 3220 RDDVVPSETP 3249
DV PSE+P
Sbjct: 292 SGDVFPSESP 263
Score = 29.9 bits (59), Expect(2) = 8e-039
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1 / -2
Query: 2650 IPATDFDALICGSGSEVYYPGTAN 2721
I + FDALIC SGS++ Y N
Sbjct: 847 IKVSAFDALICSSGSQLLYTAGDN 776
>gb|CO197674.1|CO197674 GEO1_8_E04.b1_A029 Root gravitropism April 2003 test Pinus taeda cDNA
clone GEO1_8_E04_A029 3', mRNA sequence
Length = 669
Score = 158 bits (339), Expect = 3e-037
Identities = 62/130 (47%), Positives = 86/130 (66%)
Frame = +1 / +3
Query: 2860 QDVASSNAHCVAFLIKDPQKVKTVDXXXXXXXXXXXXCHIMYCRNSTRLQVVPLLASRSQ 3039
+D +SN HC+A+ +K+ D CH++Y +N +RL+V+PL ASRSQ
Sbjct: 9 EDAEASNFHCLAYQVKNISTAPKADELRRQLRMRGLRCHVIYTQNCSRLRVLPLHASRSQ 188
Query: 3040 ALRYLSVRWGVSVGNMYLITGEHGDTDLEEMLSGLHKTVIVRGVTEKGSEALVRSPGSYK 3219
ALRYL VRWG+ + NMY+ GE GDTD EE++ G+HKT+I++G GSE ++RSP SY
Sbjct: 189 ALRYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHKTLILKGTVVDGSEKMLRSPTSYG 368
Query: 3220 RDDVVPSETP 3249
DV PSE+P
Sbjct: 369 SGDVFPSESP 398
>gb|DR110696.1|DR110696 RTS1_12_H11.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_12_H11_A029 3', mRNA sequence
Length = 763
Score = 158 bits (339), Expect = 3e-037
Identities = 62/130 (47%), Positives = 86/130 (66%)
Frame = +1 / +1
Query: 2860 QDVASSNAHCVAFLIKDPQKVKTVDXXXXXXXXXXXXCHIMYCRNSTRLQVVPLLASRSQ 3039
+D +SN HC+A+ +K+ D CH++Y +N +RL+V+PL ASRSQ
Sbjct: 82 EDAEASNFHCLAYQVKNISTAPKADELRRQLRMRGLRCHVIYTQNCSRLRVLPLHASRSQ 261
Query: 3040 ALRYLSVRWGVSVGNMYLITGEHGDTDLEEMLSGLHKTVIVRGVTEKGSEALVRSPGSYK 3219
ALRYL VRWG+ + NMY+ GE GDTD EE++ G+HKT+I++G GSE ++RSP SY
Sbjct: 262 ALRYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHKTLILKGTVVDGSEKMLRSPTSYG 441
Query: 3220 RDDVVPSETP 3249
DV PSE+P
Sbjct: 442 SGDVFPSESP 471
>gb|DR110783.1|DR110783 RTS1_12_H11.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_12_H11_A029 5', mRNA sequence
Length = 759
Score = 158 bits (339), Expect = 3e-037
Identities = 62/130 (47%), Positives = 86/130 (66%)
Frame = +1 / +2
Query: 2860 QDVASSNAHCVAFLIKDPQKVKTVDXXXXXXXXXXXXCHIMYCRNSTRLQVVPLLASRSQ 3039
+D +SN HC+A+ +K+ D CH++Y +N +RL+V+PL ASRSQ
Sbjct: 44 EDAEASNFHCLAYQVKNISTAPKADELRRQLRMRGLRCHVIYTQNCSRLRVLPLHASRSQ 223
Query: 3040 ALRYLSVRWGVSVGNMYLITGEHGDTDLEEMLSGLHKTVIVRGVTEKGSEALVRSPGSYK 3219
ALRYL VRWG+ + NMY+ GE GDTD EE++ G+HKT+I++G GSE ++RSP SY
Sbjct: 224 ALRYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHKTLILKGTVVDGSEKMLRSPTSYG 403
Query: 3220 RDDVVPSETP 3249
DV PSE+P
Sbjct: 404 SGDVFPSESP 433
>gb|CX648692.1|CX648692 COLD1_30_F12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_30_F12_A029 3', mRNA sequence
Length = 705
Score = 141 bits (303), Expect = 3e-032
Identities = 54/93 (58%), Positives = 72/93 (77%)
Frame = +1 / +2
Query: 2971 CHIMYCRNSTRLQVVPLLASRSQALRYLSVRWGVSVGNMYLITGEHGDTDLEEMLSGLHK 3150
CH++Y +N +RL+V+PL ASRSQALRYL VRWG+ + NMY+ GE GDTD EE++ G+HK
Sbjct: 8 CHVIYTQNCSRLRVLPLHASRSQALRYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHK 187
Query: 3151 TVIVRGVTEKGSEALVRSPGSYKRDDVVPSETP 3249
T+I++G GSE ++RSP SY DV PSE+P
Sbjct: 188 TLILKGTVVDGSEKMLRSPTSYGSGDVFPSESP 286
>gb|CX651090.1|CX651090 COLD1_50_C05.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_50_C05_A029 3', mRNA sequence
Length = 699
Score = 141 bits (303), Expect = 3e-032
Identities = 54/93 (58%), Positives = 72/93 (77%)
Frame = +1 / +3
Query: 2971 CHIMYCRNSTRLQVVPLLASRSQALRYLSVRWGVSVGNMYLITGEHGDTDLEEMLSGLHK 3150
CH++Y +N +RL+V+PL ASRSQALRYL VRWG+ + NMY+ GE GDTD EE++ G+HK
Sbjct: 3 CHVIYTQNCSRLRVLPLHASRSQALRYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHK 182
Query: 3151 TVIVRGVTEKGSEALVRSPGSYKRDDVVPSETP 3249
T+I++G GSE ++RSP SY DV PSE+P
Sbjct: 183 TLILKGTVVDGSEKMLRSPTSYGSGDVFPSESP 281
>gb|CX715653.1|CX715653 RTPQ1_35_D08.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_35_D08_A032 5', mRNA sequence
Length = 603
Score = 141 bits (303), Expect = 3e-032
Identities = 54/93 (58%), Positives = 72/93 (77%)
Frame = +1 / +1
Query: 2971 CHIMYCRNSTRLQVVPLLASRSQALRYLSVRWGVSVGNMYLITGEHGDTDLEEMLSGLHK 3150
CH++Y +N +RL+V+PL ASRSQALRYL VRWG+ + NMY+ GE GDTD EE++ G+HK
Sbjct: 52 CHVIYTQNCSRLRVLPLHASRSQALRYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHK 231
Query: 3151 TVIVRGVTEKGSEALVRSPGSYKRDDVVPSETP 3249
T+I++G GSE ++RSP SY DV PSE+P
Sbjct: 232 TLILKGTVVDGSEKMLRSPTSYGSGDVFPSESP 330
>gb|DR168855.1|DR168855 RTPHOS1_28_G05.b1_A029 Roots minus phosphorous Pinus taeda cDNA clone
RTPHOS1_28_G05_A029 3', mRNA sequence
Length = 763
Score = 141 bits (303), Expect = 3e-032
Identities = 54/93 (58%), Positives = 72/93 (77%)
Frame = +1 / +2
Query: 2971 CHIMYCRNSTRLQVVPLLASRSQALRYLSVRWGVSVGNMYLITGEHGDTDLEEMLSGLHK 3150
CH++Y +N +RL+V+PL ASRSQALRYL VRWG+ + NMY+ GE GDTD EE++ G+HK
Sbjct: 50 CHVIYTQNCSRLRVLPLHASRSQALRYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHK 229
Query: 3151 TVIVRGVTEKGSEALVRSPGSYKRDDVVPSETP 3249
T+I++G GSE ++RSP SY DV PSE+P
Sbjct: 230 TLILKGTVVDGSEKMLRSPTSYGSGDVFPSESP 328
>gb|DR089646.1|DR089646 RTAL1_10_B02.b1_A029 Roots plus added aluminum Pinus taeda cDNA clone
RTAL1_10_B02_A029 3', mRNA sequence
Length = 882
Score = 140 bits (301), Expect = 5e-032
Identities = 55/114 (48%), Positives = 78/114 (68%)
Frame = +1 / +3
Query: 2971 CHIMYCRNSTRLQVVPLLASRSQALRYLSVRWGVSVGNMYLITGEHGDTDLEEMLSGLHK 3150
CH++YC ++L V+PLLASRSQALRYL RWG+ V NM++ GE GDTD EE+L GLHK
Sbjct: 30 CHVIYCHKGSKLHVIPLLASRSQALRYLFTRWGMEVTNMFVFIGETGDTDYEELLGGLHK 209
Query: 3151 TVIVRGVTEKGSEALVRSPGSYKRDDVVPSETPLAAYTTGELKADEIMRALKQV 3312
T+I++G + G E L+RS SY ++DVVP + T +++ AL+++
Sbjct: 210 TIILKGTVDNGCENLLRSNSSYVKEDVVPLNSQNIVMTEEGYSVEDLEVALRKL 371
>dbj|BD236455.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 304
Score = 86.8 bits (183), Expect(2) = 3e-031
Identities = 33/46 (71%), Positives = 39/46 (84%)
Frame = +1 / +3
Query: 1531 PIWAEVMRFLTNPHKPMILALSRPDPKKNITTLVKAFGECRPLREL 1668
P+W E+ RFL NP KP+ILAL+RPDPKKN+ TLVKAFGEC LR+L
Sbjct: 165 PLWGEIPRFLNNPSKPIILALARPDPKKNMATLVKAFGECIKLRKL 302
Score = 71.2 bits (149), Expect(2) = 3e-031
Identities = 28/35 (80%), Positives = 31/35 (88%)
Frame = +1 / +3
Query: 1354 LRARARRGVSCHGRYMPRMVVIPPGMDFSNVVVHE 1458
LR RA+RGV +GRYMPRM VIPPGMDFSNVVVH+
Sbjct: 9 LRQRAKRGVHSYGRYMPRMSVIPPGMDFSNVVVHD 113
>gb|CX651163.1|CX651163 COLD1_50_C05.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_50_C05_A029 5', mRNA sequence
Length = 608
Score = 130 bits (278), Expect = 7e-029
Identities = 51/89 (57%), Positives = 68/89 (76%)
Frame = +1 / +2
Query: 2983 YCRNSTRLQVVPLLASRSQALRYLSVRWGVSVGNMYLITGEHGDTDLEEMLSGLHKTVIV 3162
+ +N +RL+V+PL ASRSQALRYL VRWG+ + NMY+ GE GDTD EE++ G+HKT+I+
Sbjct: 8 FTQNCSRLRVLPLHASRSQALRYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHKTLIL 187
Query: 3163 RGVTEKGSEALVRSPGSYKRDDVVPSETP 3249
+G GSE ++RSP SY DV PSE+P
Sbjct: 188 KGTVVDGSEKMLRSPTSYGSGDVFPSESP 274
>gb|CX648762.1|CX648762 COLD1_30_F12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_30_F12_A029 5', mRNA sequence
Length = 659
Score = 128 bits (274), Expect = 3e-028
Identities = 51/86 (59%), Positives = 66/86 (76%)
Frame = +1 / +2
Query: 2992 NSTRLQVVPLLASRSQALRYLSVRWGVSVGNMYLITGEHGDTDLEEMLSGLHKTVIVRGV 3171
N +RL+V+PL ASRSQALRYL VRWG+ + NMY+ GE GDTD EE++ G+HKT+I++G
Sbjct: 2 NCSRLRVLPLHASRSQALRYLYVRWGLDIANMYVFLGEKGDTDYEELIGGMHKTLILKGT 181
Query: 3172 TEKGSEALVRSPGSYKRDDVVPSETP 3249
GSE ++RSP SY DV PSE+P
Sbjct: 182 VVYGSEKMLRSPTSYGSGDVFPSESP 259
>gb|CX646807.1|CX646807 COLD1_11_D10.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_11_D10_A029 5', mRNA sequence
Length = 870
Score = 71.6 bits (150), Expect(2) = 1e-025
Identities = 30/69 (43%), Positives = 42/69 (60%)
Frame = +1 / +3
Query: 1825 EIYRLAAKMKGVFINPALVEPFGLTLIEAAAHGLPIVATKNGGPVDITNALNNGLLVDPH 2004
E+YR KG F+ PAL E FGLT++EA GLP AT NGGP +I +G +DP+
Sbjct: 348 ELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVDGVSGFHIDPY 527
Query: 2005 DQNAIADAL 2031
++ +D +
Sbjct: 528 HGDSASDRI 554
Score = 67.5 bits (141), Expect(2) = 1e-025
Identities = 33/85 (38%), Positives = 50/85 (58%)
Frame = +1 / +3
Query: 1528 PPIWAEVMRFLTNPHKPMILALSRPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDDI 1707
P AE M FL +P KP+I +++R D KN+T LV+ F + + LREL NL ++ G+ D
Sbjct: 48 PEQTAEHMCFLNDPKKPIIFSMARLDRVKNMTGLVEWFAKNKRLRELVNLVVVAGDIDPS 227
Query: 1708 DDMSAGNASVLTTVLKLIDKYDLYG 1782
M + + + +LI KY+L G
Sbjct: 228 KSMDREEVAEIEKMHELIKKYNLNG 302
>gb|DR097105.1|DR097105 STRR1_32_C03.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_32_C03_A033 5', mRNA sequence
Length = 743
Score = 71.6 bits (150), Expect(2) = 1e-024
Identities = 30/69 (43%), Positives = 42/69 (60%)
Frame = +1 / +2
Query: 1825 EIYRLAAKMKGVFINPALVEPFGLTLIEAAAHGLPIVATKNGGPVDITNALNNGLLVDPH 2004
E+YR KG F+ PAL E FGLT++EA GLP AT NGGP +I +G +DP+
Sbjct: 524 ELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVDGVSGFHIDPY 703
Query: 2005 DQNAIADAL 2031
++ +D +
Sbjct: 704 HGDSASDRI 730
Score = 64.3 bits (134), Expect(2) = 1e-024
Identities = 32/85 (37%), Positives = 49/85 (57%)
Frame = +1 / +2
Query: 1528 PPIWAEVMRFLTNPHKPMILALSRPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDDI 1707
P AE M L +P KP+I +++R D KN+T LV+ F + + LREL NL ++ G+ D
Sbjct: 224 PEQTAEHMCVLNDPKKPIIFSMARLDRVKNMTGLVEWFAKNKRLRELVNLVVVAGDIDPS 403
Query: 1708 DDMSAGNASVLTTVLKLIDKYDLYG 1782
M + + + +LI KY+L G
Sbjct: 404 KSMDREEVAEIEKMHELIKKYNLNG 478
>gb|DR070028.1|DR070028 RTDK1_10_G09.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_10_G09_A029 5', mRNA sequence
Length = 734
Score = 71.6 bits (150), Expect(2) = 1e-024
Identities = 30/69 (43%), Positives = 42/69 (60%)
Frame = +1 / +3
Query: 1825 EIYRLAAKMKGVFINPALVEPFGLTLIEAAAHGLPIVATKNGGPVDITNALNNGLLVDPH 2004
E+YR KG F+ PAL E FGLT++EA GLP AT NGGP +I +G +DP+
Sbjct: 519 ELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVDGVSGFHIDPY 698
Query: 2005 DQNAIADAL 2031
++ +D +
Sbjct: 699 HGDSASDRI 725
Score = 64.3 bits (134), Expect(2) = 1e-024
Identities = 32/85 (37%), Positives = 49/85 (57%)
Frame = +1 / +3
Query: 1528 PPIWAEVMRFLTNPHKPMILALSRPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDDI 1707
P AE M L +P KP+I +++R D KN+T LV+ F + + LREL NL ++ G+ D
Sbjct: 219 PEQTAEHMCVLNDPKKPIIFSMARLDRVKNMTGLVEWFAKNKRLRELVNLVVVAGDIDPS 398
Query: 1708 DDMSAGNASVLTTVLKLIDKYDLYG 1782
M + + + +LI KY+L G
Sbjct: 399 KSMDREEVAEIEKMHELIKKYNLNG 473
>gb|DR169398.1|DR169398 RTPHOS1_32_D06.b1_A029 Roots minus phosphorous Pinus taeda cDNA clone
RTPHOS1_32_D06_A029 3', mRNA sequence
Length = 554
Score = 68.9 bits (144), Expect(2) = 8e-023
Identities = 29/60 (48%), Positives = 37/60 (61%)
Frame = +1 / -3
Query: 1825 EIYRLAAKMKGVFINPALVEPFGLTLIEAAAHGLPIVATKNGGPVDITNALNNGLLVDPH 2004
E+YR KG F+ PAL E FGLT++EA GLP AT NGGP +I +G +DP+
Sbjct: 189 ELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVDGVSGFHIDPY 10
Score = 60.6 bits (126), Expect(2) = 8e-023
Identities = 28/75 (37%), Positives = 45/75 (60%)
Frame = +1 / -3
Query: 1558 LTNPHKPMILALSRPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDDMSAGNASV 1737
L +P KP+I +++R D KN+T LV+ F + + LREL NL ++ G+ D M +
Sbjct: 459 LNDPKKPIIFSMARLDRVKNMTGLVEWFAKNKRLRELVNLVVVAGDIDPSKSMDREEVAE 280
Query: 1738 LTTVLKLIDKYDLYG 1782
+ + +LI KY+L G
Sbjct: 279 IEKMHELIKKYNLNG 235
>gb|CX713086.1|CX713086 RTPQ1_6_H09.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_6_H09_A032 5', mRNA sequence
Length = 829
Score = 64.8 bits (135), Expect(2) = 1e-022
Identities = 26/47 (55%), Positives = 31/47 (65%)
Frame = +1 / +3
Query: 1825 EIYRLAAKMKGVFINPALVEPFGLTLIEAAAHGLPIVATKNGGPVDI 1965
E+YR KG F+ PAL E FGLT++EA GLP AT NGGP +I
Sbjct: 669 ELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEI 809
Score = 64.3 bits (134), Expect(2) = 1e-022
Identities = 32/85 (37%), Positives = 49/85 (57%)
Frame = +1 / +3
Query: 1528 PPIWAEVMRFLTNPHKPMILALSRPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDDI 1707
P AE M L +P KP+I +++R D KN+T LV+ F + + LREL NL ++ G+ D
Sbjct: 369 PEQTAEHMCVLNDPKKPIIFSMARLDRVKNMTGLVEWFAKNKRLRELVNLVVVAGDIDPS 548
Query: 1708 DDMSAGNASVLTTVLKLIDKYDLYG 1782
M + + + +LI KY+L G
Sbjct: 549 KSMDREEVAEIEKMHELIKKYNLNG 623
>dbj|BD236026.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 1169
Score = 67.5 bits (141), Expect(3) = 1e-022
Identities = 28/60 (46%), Positives = 37/60 (61%)
Frame = +1 / +3
Query: 1825 EIYRLAAKMKGVFINPALVEPFGLTLIEAAAHGLPIVATKNGGPVDITNALNNGLLVDPH 2004
E+YR +G F+ PAL E FGLT++EA GLP AT NGGP +I +G +DP+
Sbjct: 504 ELYRYICDTRGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVDGVSGFHIDPY 683
Score = 56.1 bits (116), Expect(3) = 1e-022
Identities = 28/85 (32%), Positives = 47/85 (55%)
Frame = +1 / +3
Query: 1528 PPIWAEVMRFLTNPHKPMILALSRPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDDI 1707
P AE M L + KP+I +++R D KN+T LV+ F + + LREL NL ++ G+ D
Sbjct: 204 PEQTAEHMCALNDRKKPIIFSMARLDRVKNMTGLVEWFAKSKRLRELVNLVVVAGDIDPS 383
Query: 1708 DDMSAGNASVLTTVLKLIDKYDLYG 1782
+ + + +L+ +Y+L G
Sbjct: 384 KSKDREEVAEIEKMHRLVKEYNLNG 458
Score = 22.6 bits (43), Expect(3) = 1e-022
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +1 / +3
Query: 2017 IADALLKLVADKNLWQECRRNGLRNIH 2097
IAD K D + W++ GL+ I+
Sbjct: 708 IADFFEKCKTDPSHWEKISNGGLQRIY 788
>gb|BX255621.1|BX255621 BX255621 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP007G11 similar to SUCROSE SYNTHASE, mRNA
sequence
Length = 706
Score = 63.8 bits (133), Expect(2) = 1e-021
Identities = 25/47 (53%), Positives = 31/47 (65%)
Frame = +1 / +3
Query: 1825 EIYRLAAKMKGVFINPALVEPFGLTLIEAAAHGLPIVATKNGGPVDI 1965
E+YR KG F+ PA+ E FGLT++EA GLP AT NGGP +I
Sbjct: 513 ELYRYICDTKGAFVQPAIYEAFGLTVVEAMTCGLPTFATCNGGPAEI 653
Score = 62.0 bits (129), Expect(2) = 1e-021
Identities = 30/80 (37%), Positives = 47/80 (58%)
Frame = +1 / +3
Query: 1543 EVMRFLTNPHKPMILALSRPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDDMSA 1722
E M L +P KP+I +++R D KN+T LV+ F + + LREL NL ++ G+ D M
Sbjct: 228 EHMCVLNDPKKPIIFSMARLDRVKNMTGLVEWFAKNKRLRELVNLVVVAGDIDPSKSMDR 407
Query: 1723 GNASVLTTVLKLIDKYDLYG 1782
+ + + +LI KY+L G
Sbjct: 408 EEVAEIEKMHELIKKYNLNG 467
>gb|AW043393.1|AW043393 ST32H03 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST32H03, mRNA sequence
Length = 590
Score = 103 bits (219), Expect(2) = 4e-021
Identities = 37/77 (48%), Positives = 54/77 (70%)
Frame = +1 / +1
Query: 2065 ECRRNGLRNIHLYSWPEHCRTYLTRVAGCRLRNPRWLKDTPADAGADEEEFLEDSMDAQD 2244
ECR+NGL+NIHLYSWP+HCRTYL+R++ CR+R+P+W + + D E DA D
Sbjct: 7 ECRQNGLQNIHLYSWPQHCRTYLSRISQCRMRHPQWQSENDQNENMDSESDSGSFKDAPD 186
Query: 2245 LSLRLSIDGEKSSLNTN 2295
SLRLS+ ++ S +++
Sbjct: 187 TSLRLSLGADRPSRSSS 237
Score = 24.9 bits (48), Expect(2) = 4e-021
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1 / +2
Query: 2470 FVIAVDCYQDDG 2505
FVIAVDCY G
Sbjct: 455 FVIAVDCYDASG 490
>gb|BE209183.1|BE209183 NXNV_147_A11_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_147_A11 5' similar to Arabidopsis thaliana sequence
At3g43190 sucrose synthase like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 524
Score = 64.8 bits (135), Expect(2) = 5e-021
Identities = 28/60 (46%), Positives = 36/60 (60%)
Frame = +1 / +3
Query: 1825 EIYRLAAKMKGVFINPALVEPFGLTLIEAAAHGLPIVATKNGGPVDITNALNNGLLVDPH 2004
E+YR KG F+ PAL E FGLT++EA GL AT NGGP +I +G +DP+
Sbjct: 267 ELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLXTFATCNGGPAEIIVDGVSGFHIDPY 446
Score = 58.8 bits (122), Expect(2) = 5e-021
Identities = 27/73 (36%), Positives = 44/73 (60%)
Frame = +1 / +3
Query: 1564 NPHKPMILALSRPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDDMSAGNASVLT 1743
+P KP+I +++R D KN+T LV+ F + + LREL NL ++ G+ D M + +
Sbjct: 3 DPKKPIIFSMARLDRVKNMTGLVEWFAKNKRLRELVNLVVVAGDIDPSKSMDREEVAEIE 182
Query: 1744 TVLKLIDKYDLYG 1782
+ +LI KY+L G
Sbjct: 183 KMHELIKKYNLNG 221
>gb|BX252531.1|BX252531 BX252531 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP066B03 similar to SUCROSE SYNTHASE, mRNA
sequence
Length = 712
Score = 67.5 bits (141), Expect(2) = 7e-021
Identities = 28/60 (46%), Positives = 37/60 (61%)
Frame = +1 / +3
Query: 1825 EIYRLAAKMKGVFINPALVEPFGLTLIEAAAHGLPIVATKNGGPVDITNALNNGLLVDPH 2004
E+YR +G F+ PAL E FGLT++EA GLP AT NGGP +I +G +DP+
Sbjct: 396 ELYRYICDTRGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVDGVSGFHIDPY 575
Score = 55.6 bits (115), Expect(2) = 7e-021
Identities = 28/85 (32%), Positives = 47/85 (55%)
Frame = +1 / +3
Query: 1528 PPIWAEVMRFLTNPHKPMILALSRPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDDI 1707
P AE M L + KP+I +++R D KN+T LV+ F + + LREL NL ++ G+ D
Sbjct: 96 PEQTAEHMCALNDLKKPIIFSMARLDRVKNMTGLVEWFAKSKRLRELVNLVVVAGDIDPS 275
Query: 1708 DDMSAGNASVLTTVLKLIDKYDLYG 1782
+ + + +L+ +Y+L G
Sbjct: 276 KSKDREEVAEIEKMHRLVKEYNLNG 350
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,906,091,857
Number of Sequences: 355925
Number of extensions: 31252003
Number of successful extensions: 164189
Number of sequences better than 1.0e-020: 39
length of database: 72,425,745
effective HSP length: 56
effective length of database: 52,493,945
effective search space used: 58740724455
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)