TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748389.2.1
(663 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR018897.1|DR018897 STRS1_26_B10.g1_A034 Shoot tip pitch... 118 1e-037
gb|CO366369.1|CO366369 RTK1_27_A12.g1_A029 Roots minus pota... 116 2e-037
gb|CO364719.1|CO364719 RTK1_21_H11.b1_A029 Roots minus pota... 116 2e-037
gb|CO364809.1|CO364809 RTK1_21_H11.g1_A029 Roots minus pota... 116 2e-037
gb|CO366290.1|CO366290 RTK1_27_A12.b1_A029 Roots minus pota... 116 2e-037
gb|CO164398.1|CO164398 FLD1_47_F07.g1_A029 Root flooded Pin... 116 2e-037
gb|CF670695.1|CF670695 RTCNT1_52_A02.b1_A029 Root control P... 116 2e-037
gb|DR023906.1|DR023906 STRS1_60_F12.g1_A034 Shoot tip pitch... 116 2e-037
gb|DR388606.1|DR388606 RTHG1_29_G11.b1_A029 Roots plus adde... 116 3e-037
gb|CF666350.1|CF666350 RTCNT1_22_D10.g1_A029 Root control P... 115 3e-037
gb|CO165247.1|CO165247 FLD1_53_G10.b1_A029 Root flooded Pin... 116 3e-037
gb|DR093819.1|DR093819 STRR1_10_D02.g1_A033 Stem Response R... 116 4e-037
gb|DR093736.1|DR093736 STRR1_10_D02.b1_A033 Stem Response R... 116 4e-037
gb|DR743885.1|DR743885 RTCU1_18_F04.g1_A029 Roots plus adde... 111 5e-036
gb|DR098127.1|DR098127 STRR1_39_F11.b1_A033 Stem Response R... 150 7e-036
gb|BX678334.1|BX678334 BX678334 RN Pinus pinaster cDNA clon... 108 7e-036
gb|CO160820.1|CO160820 FLD1_24_E03.g1_A029 Root flooded Pin... 116 2e-035
gb|DR181620.1|DR181620 RTMNUT1_40_B04.b2_A029 Roots minus m... 110 3e-035
gb|DR745804.1|DR745804 RTCU1_32_D10.g1_A029 Roots plus adde... 110 3e-035
gb|CV035264.1|CV035264 RTNACL1_14_H03.g1_A029 Roots plus ad... 148 3e-035
gb|CO368306.1|CO368306 RTK1_39_G08.g1_A029 Roots minus pota... 107 6e-035
gb|CO368218.1|CO368218 RTK1_39_G08.b1_A029 Roots minus pota... 107 6e-035
gb|BX249942.1|BX249942 BX249942 Pinus pinaster differenciat... 110 1e-034
gb|CO367983.1|CO367983 RTK1_37_H12.g1_A029 Roots minus pota... 100 2e-034
gb|CO201704.1|CO201704 RTCNT2_7_C09.g1_A029 Root control 2 ... 109 6e-034
gb|CO163860.1|CO163860 FLD1_44_F02.b1_A029 Root flooded Pin... 143 2e-033
gb|DR180778.1|DR180778 RTMNUT1_34_F12.g1_A029 Roots minus m... 105 2e-033
gb|CX646003.1|CX646003 COLD1_6_D11.g1_A029 Root cold Pinus ... 86 3e-033
gb|CF663283.1|CF663283 RTCNT1_1_H12.g1_A029 Root control Pi... 116 4e-033
gb|CO362361.1|CO362361 RTK1_3_C10.b1_A029 Roots minus potas... 95 4e-033
gb|DN458892.1|DN458892 EST954691 Sequencing ESTs from loblo... 104 5e-033
gb|DT626677.1|DT626677 EST1159753 Sequencing ESTs from lobl... 104 5e-033
gb|CO162696.1|CO162696 FLD1_37_A08.b1_A029 Root flooded Pin... 104 5e-033
gb|DR095142.1|DR095142 STRR1_19_C05.b1_A033 Stem Response R... 95 5e-033
gb|CF385056.1|CF385056 RTDR1_1_E08.g1_A015 Loblolly pine ro... 97 1e-032
gb|CF386347.1|CF386347 RTDR1_13_F04.g1_A015 Loblolly pine r... 97 1e-032
gb|CF470340.1|CF470340 RTDS1_18_D11.g1_A015 Drought-stresse... 95 2e-032
gb|DR181702.1|DR181702 RTMNUT1_40_B04.g2_A029 Roots minus m... 110 3e-032
gb|CO370290.1|CO370290 RTK1_67_A02.b1_A029 Roots minus pota... 107 4e-032
gb|CV134798.1|CV134798 EST846007 Sequencing ESTs from loblo... 95 6e-032
gb|CO197579.1|CO197579 GEO1_7_A12.g1_A029 Root gravitropism... 116 6e-032
gb|DR389094.1|DR389094 RTHG1_32_H10.b1_A029 Roots plus adde... 116 6e-032
gb|DT625926.1|DT625926 EST1157850 Sequencing ESTs from lobl... 95 6e-032
gb|DR017842.1|DR017842 STRS1_18_G07.g1_A034 Shoot tip pitch... 116 4e-031
gb|CO196958.1|CO196958 GEO1_2_H08.g1_A029 Root gravitropism... 104 8e-031
gb|CN785841.1|CN785841 EST784532 Sequencing ESTs from loblo... 109 2e-030
gb|DR052787.1|DR052787 RTCA1_6_H02.g1_A029 Roots minus calc... 88 4e-030
gb|BX681374.1|BX681374 BX681374 RS Pinus pinaster cDNA clon... 94 7e-030
gb|BF778862.1|BF778862 NXSI_089_C07_F NXSI (Nsf Xylem Side ... 94 2e-029
gb|DR179487.1|DR179487 RTMNUT1_22_H11.b2_A029 Roots minus m... 86 3e-029
gb|CF478562.1|CF478562 RTWW3_20_A12.g1_A022 Well-watered lo... 105 3e-029
gb|DR694987.1|DR694987 EST1085080 Normalized pine embryo li... 92 2e-028
gb|BX680435.1|BX680435 BX680435 RS Pinus pinaster cDNA clon... 93 2e-028
gb|DT638838.1|DT638838 EST1153769 Normalized pine embryo li... 91 6e-028
gb|CF401158.1|CF401158 RTWW1_10_D01.g1_A015 Well-watered lo... 89 6e-028
gb|CF386446.1|CF386446 RTDR1_14_C12.g1_A015 Loblolly pine r... 89 8e-028
gb|DR386533.1|DR386533 RTHG1_15_G09.g1_A029 Roots plus adde... 94 1e-027
gb|CF478552.1|CF478552 RTWW3_20_C12.g1_A022 Well-watered lo... 94 1e-027
gb|CO363000.1|CO363000 RTK1_7_B10.b1_A029 Roots minus potas... 95 1e-027
gb|DR088632.1|DR088632 RTAL1_3_G06.b1_A029 Roots plus added... 90 1e-027
gb|CF396075.1|CF396075 RTDS2_13_A03.g1_A021 Drought-stresse... 100 2e-027
gb|CF472572.1|CF472572 RTDS1_10_C02.g1_A015 Drought-stresse... 100 2e-027
gb|DR060591.1|DR060591 RTNIT1_28_F10.g1_A029 Roots minus ni... 100 2e-027
gb|CF394807.1|CF394807 RTDS2_7_F05.g1_A021 Drought-stressed... 122 2e-027
gb|CF394916.1|CF394916 RTDS2_8_F04.g1_A021 Drought-stressed... 122 2e-027
gb|DR160864.1|DR160864 RTFE1_8_B03.g1_A029 Roots minus iron... 94 3e-027
gb|DR057552.1|DR057552 RTNIT1_6_A10.g1_A029 Roots minus nit... 94 3e-027
gb|CO162822.1|CO162822 FLD1_37_F01.g1_A029 Root flooded Pin... 92 4e-027
gb|DR111145.1|DR111145 RTS1_15_D11.g1_A029 Roots minus sulf... 92 4e-027
gb|CF472330.1|CF472330 RTDS1_9_E09.b1_A015 Drought-stressed... 92 4e-027
gb|CO161650.1|CO161650 FLD1_30_F08.b1_A029 Root flooded Pin... 94 5e-027
gb|DR167350.1|DR167350 RTPHOS1_18_F11.b1_A029 Roots minus p... 100 1e-026
gb|CF397219.1|CF397219 RTDS3_2_G04.b2_A022 Drought-stressed... 100 1e-026
gb|CO171082.1|CO171082 NDL1_18_H08.g1_A029 Needles control ... 77 1e-026
gb|DR744020.1|DR744020 RTCU1_19_E11.g1_A029 Roots plus adde... 77 2e-026
gb|DR018577.1|DR018577 STRS1_24_C07.b1_A034 Shoot tip pitch... 73 3e-026
gb|CF471631.1|CF471631 RTDS1_4_B06.g1_A015 Drought-stressed... 100 3e-026
gb|DR169118.1|DR169118 RTPHOS1_30_E02.b1_A029 Roots minus p... 79 5e-026
gb|CO369474.1|CO369474 RTK1_47_A02.g1_A029 Roots minus pota... 89 5e-026
gb|CF398051.1|CF398051 RTDS3_22_D05.b1_A022 Drought-stresse... 100 6e-026
gb|DR181918.1|DR181918 RTMNUT1_41_F12.g1_A029 Roots minus m... 100 9e-026
gb|DR388603.1|DR388603 RTHG1_29_G08.b1_A029 Roots plus adde... 71 9e-026
gb|CF392457.1|CF392457 RTDR3_6_C12.b1_A022 Loblolly pine ro... 91 1e-025
gb|CO364178.1|CO364178 RTK1_14_E02.b1_A029 Roots minus pota... 81 2e-025
gb|DR019885.1|DR019885 STRS1_33_D06.b1_A034 Shoot tip pitch... 91 2e-025
gb|BF777508.1|BF777508 NXSI_069_D06_F NXSI (Nsf Xylem Side ... 71 2e-025
gb|CF472144.1|CF472144 RTDS1_8_F05.g1_A015 Drought-stressed... 116 2e-025
gb|CO164324.1|CO164324 FLD1_47_F07.b1_A029 Root flooded Pin... 116 2e-025
gb|DR059072.1|DR059072 RTNIT1_15_C01.g1_A029 Roots minus ni... 116 2e-025
gb|DR096904.1|DR096904 STRR1_31_E01.b1_A033 Stem Response R... 116 2e-025
gb|DR163135.1|DR163135 RTFE1_41_D09.b1_A029 Roots minus iro... 108 2e-025
gb|DR071672.1|DR071672 RTDK1_21_H10.b1_A029 Roots, dark Pin... 88 3e-025
gb|DR024108.1|DR024108 STRS1_62_A06.g1_A034 Shoot tip pitch... 74 3e-025
gb|CF401719.1|CF401719 RTWW1_14_A04.g1_A015 Well-watered lo... 90 3e-025
gb|DR072788.1|DR072788 RTDK1_28_D01.g1_A029 Roots, dark Pin... 74 3e-025
gb|CF666281.1|CF666281 RTCNT1_22_D10.b1_A029 Root control P... 115 4e-025
gb|DR015813.1|DR015813 STRS1_5_F11.g1_A034 Shoot tip pitch ... 74 4e-025
gb|CF474429.1|CF474429 RTWW2_20_F05.g1_A021 Well-watered lo... 86 4e-025
gb|CF400127.1|CF400127 RTWW1_3_H10.g1_A015 Well-watered lob... 89 4e-025
gb|DR018833.1|DR018833 STRS1_26_B10.b2_A034 Shoot tip pitch... 114 5e-025
gb|BQ106995.1|BQ106995 NXLV085_C09_F NXLV (Nsf Xylem Late w... 90 8e-025
gb|BG275211.1|BG275211 NXSI_138_A11_F NXSI (Nsf Xylem Side ... 75 8e-025
gb|DR023823.1|DR023823 STRS1_60_F12.b1_A034 Shoot tip pitch... 113 1e-024
gb|DR019261.1|DR019261 STRS1_28_F11.g1_A034 Shoot tip pitch... 73 1e-024
gb|CV033205.1|CV033205 RTNACL1_33_B10.b1_A029 Roots plus ad... 73 1e-024
gb|CO172600.1|CO172600 NDL1_30_E11.g1_A029 Needles control ... 73 1e-024
gb|CF667004.1|CF667004 RTCNT1_27_C11.g1_A029 Root control P... 73 1e-024
gb|DR019177.1|DR019177 STRS1_28_F11.b2_A034 Shoot tip pitch... 73 1e-024
gb|CF387087.1|CF387087 RTDR1_10_C07.g1_A015 Loblolly pine r... 73 1e-024
gb|CO364746.1|CO364746 RTK1_21_C04.g1_A029 Roots minus pota... 71 2e-024
gb|CF663199.1|CF663199 RTCNT1_1_H12.b1_A029 Root control Pi... 112 3e-024
gb|DT626044.1|DT626044 EST1157968 Sequencing ESTs from lobl... 73 3e-024
gb|CV134986.1|CV134986 EST846195 Sequencing ESTs from loblo... 73 3e-024
gb|DR021519.1|DR021519 STRS1_45_E08.b1_A034 Shoot tip pitch... 73 3e-024
gb|CO201469.1|CO201469 RTCNT2_6_A10.b1_A029 Root control 2 ... 82 4e-024
gb|CF670450.1|CF670450 RTCNT1_50_F12.b1_A029 Root control P... 106 4e-024
gb|DR051999.1|DR051999 RTCA1_1_F08.g1_A029 Roots minus calc... 89 5e-024
gb|DR091543.1|DR091543 RTAL1_22_H02.b1_A029 Roots plus adde... 90 5e-024
gb|CF393653.1|CF393653 RTDR3_15_B07.g1_A022 Loblolly pine r... 90 5e-024
gb|DN458725.1|DN458725 EST954524 Sequencing ESTs from loblo... 107 5e-024
gb|DR177492.1|DR177492 RTMNUT1_5_D07.g1_A029 Roots minus mi... 111 7e-024
gb|CO370199.1|CO370199 RTK1_66_E01.b1_A029 Roots minus pota... 105 7e-024
gb|BE762300.1|BE762300 NXCI_067_H03_F NXCI (Nsf Xylem Compr... 69 8e-024
gb|DR110554.1|DR110554 RTS1_11_C05.g1_A029 Roots minus sulf... 67 1e-023
gb|DR385279.1|DR385279 RTHG1_7_E09.g1_A029 Roots plus added... 67 1e-023
gb|DR385195.1|DR385195 RTHG1_7_E09.b1_A029 Roots plus added... 67 1e-023
gb|DR169191.1|DR169191 RTPHOS1_30_E02.g1_A029 Roots minus p... 110 1e-023
gb|CO161727.1|CO161727 FLD1_30_F08.g1_A029 Root flooded Pin... 94 1e-023
gb|CX649821.1|CX649821 COLD1_41_E05.g1_A029 Root cold Pinus... 67 2e-023
gb|CX713719.1|CX713719 RTPQ1_12_G11.b1_A032 Roots treated w... 109 2e-023
gb|CO364236.1|CO364236 RTK1_14_B09.g1_A029 Roots minus pota... 68 2e-023
gb|CF470929.1|CF470929 RTDS1_15_D01.g1_A015 Drought-stresse... 68 2e-023
gb|CF397459.1|CF397459 RTDS3_3_C06.g1_A022 Drought-stressed... 68 2e-023
gb|CF470501.1|CF470501 RTDS1_17_D08.g1_A015 Drought-stresse... 68 2e-023
gb|DR015214.1|DR015214 STRS1_2_D11.b1_A034 Shoot tip pitch ... 72 2e-023
gb|CF474107.1|CF474107 RTWW2_18_C05.g1_A021 Well-watered lo... 73 2e-023
gb|CF403096.1|CF403096 RTWW1_24_D09.g1_A015 Well-watered lo... 76 2e-023
gb|DR164234.1|DR164234 RTFE1_47_E03.g1_A029 Roots minus iro... 74 3e-023
gb|CO175549.1|CO175549 NDL1_55_B04.g1_A029 Needles control ... 84 3e-023
gb|CV034765.1|CV034765 RTNACL1_11_A09.g1_A029 Roots plus ad... 74 3e-023
gb|DR015862.1|DR015862 STRS1_6_D07.b1_A034 Shoot tip pitch ... 69 4e-023
gb|DR015938.1|DR015938 STRS1_6_D07.g1_A034 Shoot tip pitch ... 69 5e-023
gb|CF385981.1|CF385981 RTDR1_7_E07.g1_A015 Loblolly pine ro... 73 5e-023
gb|DR024314.1|DR024314 STRS1_64_C03.b1_A034 Shoot tip pitch... 71 8e-023
gb|CO362964.1|CO362964 RTK1_6_G06.g1_A029 Roots minus potas... 73 9e-023
gb|CO201030.1|CO201030 RTCNT2_3_E05.b1_A029 Root control 2 ... 107 9e-023
gb|DR094210.1|DR094210 STRR1_13_D08.b1_A033 Stem Response R... 67 1e-022
gb|CX712559.1|CX712559 RTPQ1_3_F09.b2_A032 Roots treated wi... 68 1e-022
gb|CF472392.1|CF472392 RTDS1_9_E09.g1_A015 Drought-stressed... 92 2e-022
gb|CX645779.1|CX645779 COLD1_5_F07.b1_A029 Root cold Pinus ... 73 2e-022
gb|CF470473.1|CF470473 RTDS1_17_C10.g1_A015 Drought-stresse... 64 3e-022
gb|DR018139.1|DR018139 STRS1_20_E09.g1_A034 Shoot tip pitch... 68 3e-022
gb|DR117403.1|DR117403 RTMG1_6_F06.g1_A029 Roots minus magn... 68 5e-022
gb|CO366516.1|CO366516 RTK1_28_G11.b1_A029 Roots minus pota... 72 7e-022
gb|DR180536.1|DR180536 RTMNUT1_33_F10.b1_A029 Roots minus m... 72 7e-022
gb|CO176349.1|CO176349 NDL1_61_A07.g1_A029 Needles control ... 72 7e-022
gb|DR744088.1|DR744088 RTCU1_20_D07.b1_A029 Roots plus adde... 72 7e-022
gb|CO159636.1|CO159636 FLD1_14_G06.g1_A029 Root flooded Pin... 72 7e-022
gb|BQ699997.1|BQ699997 NXRV132_G06_F NXRV (Nsf Xylem Root w... 72 7e-022
gb|BX250474.1|BX250474 BX250474 Pinus pinaster differenciat... 72 2e-021
gb|DR389176.1|DR389176 RTHG1_32_H10.g1_A029 Roots plus adde... 62 2e-021
gb|CO167421.1|CO167421 FLD1_68_G10.g1_A029 Root flooded Pin... 72 3e-021
gb|DR743949.1|DR743949 RTCU1_19_E11.b1_A029 Roots plus adde... 77 5e-021
gb|CO363521.1|CO363521 RTK1_10_F05.b1_A029 Roots minus pota... 72 5e-021
gb|DR117368.1|DR117368 RTMG1_6_C05.g1_A029 Roots minus magn... 68 6e-021
gb|DR112917.1|DR112917 RTS1_31_C10.g1_A029 Roots minus sulf... 70 7e-021
gb|DR099835.1|DR099835 STRR1_59_B12.b1_A033 Stem Response R... 67 9e-021
gb|CO159644.1|CO159644 FLD1_14_H03.g1_A029 Root flooded Pin... 68 9e-021
gb|CF471647.1|CF471647 RTDS1_4_B03.g1_A015 Drought-stressed... 95 9e-021
>gb|DR018897.1|DR018897 STRS1_26_B10.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_26_B10_A034 5', mRNA sequence
Length = 855
Score = 118 bits (252), Expect(2) = 1e-037
Identities = 46/78 (58%), Positives = 60/78 (76%)
Frame = +3 / +3
Query: 120 ADAAPGQGTGGLPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSR 299
+D+A G LPEGFE R + RGLV +GWVPQ R+L+H S+GGFL+HAGW+S+ E LS
Sbjct: 360 SDSARDDPVGILPEGFEIRTHDRGLVVQGWVPQVRILSHPSIGGFLSHAGWSSVMESLSF 539
Query: 300 GVTMVLLPLMFDQGLNAR 353
G+ ++LLPL +QGLNAR
Sbjct: 540 GIPLILLPLRLEQGLNAR 593
Score = 58.3 bits (121), Expect(2) = 1e-037
Identities = 23/39 (58%), Positives = 30/39 (76%)
Frame = +3 / +3
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPP 119
SVV+ +FGSEA L+ Q+ +ALG+EASG+PFLW R P
Sbjct: 237 SVVFVSFGSEAFLSEDQIHQLALGVEASGIPFLWCLRFP 353
>gb|CO366369.1|CO366369 RTK1_27_A12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_27_A12_A029 5', mRNA sequence
Length = 853
Score = 116 bits (247), Expect(2) = 2e-037
Identities = 44/67 (65%), Positives = 54/67 (80%)
Frame = +3 / -1
Query: 153 LPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPLMF 332
LPEGFE R RGLV +GWVPQ R+L+H S+GGFL+HAGW+S+ E LS G+ ++LLPL
Sbjct: 646 LPEGFEIRTQDRGLVVQGWVPQVRILSHSSIGGFLSHAGWSSVMESLSFGIPLILLPLRL 467
Query: 333 DQGLNAR 353
DQGLNAR
Sbjct: 466 DQGLNAR 446
Score = 60.2 bits (125), Expect(2) = 2e-037
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +3 / -1
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPPADAAPGQ 140
SVV+ +FGSEA L+ Q+ +ALGLEASG+PFLW R P + G+
Sbjct: 802 SVVFVSFGSEAFLSEDQIHELALGLEASGIPFLWCLRFPRYSDSGR 665
>gb|CO364719.1|CO364719 RTK1_21_H11.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_21_H11_A029 3', mRNA sequence
Length = 835
Score = 116 bits (247), Expect(2) = 2e-037
Identities = 44/67 (65%), Positives = 54/67 (80%)
Frame = +3 / -3
Query: 153 LPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPLMF 332
LPEGFE R RGLV +GWVPQ R+L+H S+GGFL+HAGW+S+ E LS G+ ++LLPL
Sbjct: 419 LPEGFEIRTQDRGLVVQGWVPQVRILSHSSIGGFLSHAGWSSVMESLSFGIPLILLPLRL 240
Query: 333 DQGLNAR 353
DQGLNAR
Sbjct: 239 DQGLNAR 219
Score = 60.2 bits (125), Expect(2) = 2e-037
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +3 / -3
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPPADAAPGQ 140
SVV+ +FGSEA L+ Q+ +ALGLEASG+PFLW R P + G+
Sbjct: 575 SVVFVSFGSEAFLSEDQIHELALGLEASGIPFLWCLRFPRYSDSGR 438
>gb|CO364809.1|CO364809 RTK1_21_H11.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_21_H11_A029 5', mRNA sequence
Length = 822
Score = 116 bits (247), Expect(2) = 2e-037
Identities = 44/67 (65%), Positives = 54/67 (80%)
Frame = +3 / -1
Query: 153 LPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPLMF 332
LPEGFE R RGLV +GWVPQ R+L+H S+GGFL+HAGW+S+ E LS G+ ++LLPL
Sbjct: 630 LPEGFEIRTQDRGLVVQGWVPQVRILSHSSIGGFLSHAGWSSVMESLSFGIPLILLPLRL 451
Query: 333 DQGLNAR 353
DQGLNAR
Sbjct: 450 DQGLNAR 430
Score = 60.2 bits (125), Expect(2) = 2e-037
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +3 / -1
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPPADAAPGQ 140
SVV+ +FGSEA L+ Q+ +ALGLEASG+PFLW R P + G+
Sbjct: 786 SVVFVSFGSEAFLSEDQIHELALGLEASGIPFLWCLRFPRYSDSGR 649
>gb|CO366290.1|CO366290 RTK1_27_A12.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_27_A12_A029 3', mRNA sequence
Length = 810
Score = 116 bits (247), Expect(2) = 2e-037
Identities = 44/67 (65%), Positives = 54/67 (80%)
Frame = +3 / -2
Query: 153 LPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPLMF 332
LPEGFE R RGLV +GWVPQ R+L+H S+GGFL+HAGW+S+ E LS G+ ++LLPL
Sbjct: 395 LPEGFEIRTQDRGLVVQGWVPQVRILSHSSIGGFLSHAGWSSVMESLSFGIPLILLPLRL 216
Query: 333 DQGLNAR 353
DQGLNAR
Sbjct: 215 DQGLNAR 195
Score = 60.2 bits (125), Expect(2) = 2e-037
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +3 / -2
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPPADAAPGQ 140
SVV+ +FGSEA L+ Q+ +ALGLEASG+PFLW R P + G+
Sbjct: 551 SVVFVSFGSEAFLSEDQIHELALGLEASGIPFLWCLRFPRYSDSGR 414
>gb|CO164398.1|CO164398 FLD1_47_F07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_47_F07_A029 5', mRNA sequence
Length = 707
Score = 116 bits (247), Expect(2) = 2e-037
Identities = 44/67 (65%), Positives = 54/67 (80%)
Frame = +3 / +2
Query: 153 LPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPLMF 332
LPEGFE R RGLV +GWVPQ R+L+H S+GGFL+HAGW+S+ E LS G+ ++LLPL
Sbjct: 431 LPEGFEIRTQDRGLVVQGWVPQVRILSHSSIGGFLSHAGWSSVMESLSFGIPLILLPLRL 610
Query: 333 DQGLNAR 353
DQGLNAR
Sbjct: 611 DQGLNAR 631
Score = 60.2 bits (125), Expect(2) = 2e-037
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +3 / +2
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPPADAAPGQ 140
SVV+ +FGSEA L+ Q+ +ALGLEASG+PFLW R P + G+
Sbjct: 275 SVVFVSFGSEAFLSEDQIHELALGLEASGIPFLWCLRFPRYSDSGR 412
>gb|CF670695.1|CF670695 RTCNT1_52_A02.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_52_A02_A029 3', mRNA sequence
Length = 703
Score = 116 bits (247), Expect(2) = 2e-037
Identities = 45/78 (57%), Positives = 58/78 (74%)
Frame = +3 / -2
Query: 120 ADAAPGQGTGGLPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSR 299
+D+ G LPEGFE R RGLV +GWVPQ ++L+H S+GGFL+HAGW+S+ E LS
Sbjct: 324 SDSGRDDPVGILPEGFEIRTQDRGLVVQGWVPQVQILSHPSIGGFLSHAGWSSVMESLSF 145
Query: 300 GVTMVLLPLMFDQGLNAR 353
G+ ++LLPL DQGLNAR
Sbjct: 144 GIPLILLPLRLDQGLNAR 91
Score = 60.2 bits (125), Expect(2) = 2e-037
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +3 / -2
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPPADAAPGQ 140
SVV+ +FGSEA L+ Q+ +ALGLEASG+PFLW R P + G+
Sbjct: 447 SVVFVSFGSEAFLSEDQIHQLALGLEASGIPFLWCLRFPRYSDSGR 310
>gb|DR023906.1|DR023906 STRS1_60_F12.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_60_F12_A034 5', mRNA sequence
Length = 567
Score = 116 bits (247), Expect(2) = 2e-037
Identities = 45/78 (57%), Positives = 58/78 (74%)
Frame = +3 / +1
Query: 120 ADAAPGQGTGGLPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSR 299
+D+ G LPEGFE R RGLV +GWVPQ ++L+H S+GGFL+HAGW+S+ E LS
Sbjct: 271 SDSGRDDPVGILPEGFEIRTQDRGLVVQGWVPQVQILSHPSIGGFLSHAGWSSVMESLSF 450
Query: 300 GVTMVLLPLMFDQGLNAR 353
G+ ++LLPL DQGLNAR
Sbjct: 451 GIPLILLPLRLDQGLNAR 504
Score = 60.2 bits (125), Expect(2) = 2e-037
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +3 / +1
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPPADAAPGQ 140
SVV+ +FGSEA L+ Q+ +ALGLEASG+PFLW R P + G+
Sbjct: 148 SVVFVSFGSEAFLSEDQIHQLALGLEASGIPFLWCLRFPRYSDSGR 285
>gb|DR388606.1|DR388606 RTHG1_29_G11.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_29_G11_A029 3', mRNA sequence
Length = 826
Score = 116 bits (248), Expect(2) = 3e-037
Identities = 45/78 (57%), Positives = 59/78 (75%)
Frame = +3 / +2
Query: 120 ADAAPGQGTGGLPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSR 299
+D+ G LPEGFE R + RGLV +GWVPQ R+L+H S+GGFL+HAGW+S+ E LS
Sbjct: 155 SDSGRDDPVGILPEGFEIRTHDRGLVVQGWVPQVRILSHPSIGGFLSHAGWSSVMESLSF 334
Query: 300 GVTMVLLPLMFDQGLNAR 353
G+ ++LLPL +QGLNAR
Sbjct: 335 GIPLILLPLRLEQGLNAR 388
Score = 58.8 bits (122), Expect(2) = 3e-037
Identities = 24/46 (52%), Positives = 33/46 (71%)
Frame = +3 / +2
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPPADAAPGQ 140
SVV+ +FGSEA L+ Q+ +ALG+EASG+PFLW R P + G+
Sbjct: 32 SVVFVSFGSEAFLSEDQIHQLALGVEASGIPFLWCLRFPRYSDSGR 169
>gb|CF666350.1|CF666350 RTCNT1_22_D10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_22_D10_A029 5', mRNA sequence
Length = 828
Score = 115 bits (245), Expect(2) = 3e-037
Identities = 45/78 (57%), Positives = 58/78 (74%)
Frame = +3 / +2
Query: 120 ADAAPGQGTGGLPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSR 299
+D+ G LPEGFE R RGLV +GWVPQ ++L+H S+GGFL+HAGW+S+ E LS
Sbjct: 260 SDSGRDDPVGILPEGFEIRTQDRGLVVQGWVPQVQILSHPSIGGFLSHAGWSSVMESLSF 439
Query: 300 GVTMVLLPLMFDQGLNAR 353
G+ ++LLPL DQGLNAR
Sbjct: 440 GMPLILLPLRLDQGLNAR 493
Score = 60.2 bits (125), Expect(2) = 3e-037
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +3 / +2
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPPADAAPGQ 140
SVV+ +FGSEA L+ Q+ +ALGLEASG+PFLW R P + G+
Sbjct: 137 SVVFVSFGSEAFLSEDQIHQLALGLEASGIPFLWCLRFPRYSDSGR 274
>gb|CO165247.1|CO165247 FLD1_53_G10.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_53_G10_A029 3', mRNA sequence
Length = 762
Score = 116 bits (248), Expect(2) = 3e-037
Identities = 45/78 (57%), Positives = 59/78 (75%)
Frame = +3 / +3
Query: 120 ADAAPGQGTGGLPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSR 299
+D+ G LPEGFE R + RGLV +GWVPQ R+L+H S+GGFL+HAGW+S+ E LS
Sbjct: 150 SDSGRDDPVGILPEGFEIRTHDRGLVVQGWVPQVRILSHPSIGGFLSHAGWSSVMESLSF 329
Query: 300 GVTMVLLPLMFDQGLNAR 353
G+ ++LLPL +QGLNAR
Sbjct: 330 GIPLILLPLRLEQGLNAR 383
Score = 58.8 bits (122), Expect(2) = 3e-037
Identities = 24/46 (52%), Positives = 33/46 (71%)
Frame = +3 / +3
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPPADAAPGQ 140
SVV+ +FGSEA L+ Q+ +ALG+EASG+PFLW R P + G+
Sbjct: 27 SVVFVSFGSEAFLSEDQIHQLALGVEASGIPFLWCLRFPRYSDSGR 164
>gb|DR093819.1|DR093819 STRR1_10_D02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_10_D02_A033 5', mRNA sequence
Length = 823
Score = 116 bits (248), Expect(2) = 4e-037
Identities = 46/78 (58%), Positives = 59/78 (75%)
Frame = +3 / +3
Query: 120 ADAAPGQGTGGLPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSR 299
+D+A G LPEGFE R + RGLV +GWV Q R+L+H S+GGFL+HAGW+S+ E LS
Sbjct: 357 SDSARDDPVGILPEGFEIRTHDRGLVVQGWVSQVRILSHPSIGGFLSHAGWSSVMESLSF 536
Query: 300 GVTMVLLPLMFDQGLNAR 353
G+ ++LLPL DQGLNAR
Sbjct: 537 GIPLILLPLRLDQGLNAR 590
Score = 58.3 bits (121), Expect(2) = 4e-037
Identities = 23/39 (58%), Positives = 30/39 (76%)
Frame = +3 / +3
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPP 119
SVV+ +FGSEA L+ Q+ +ALG+EASG+PFLW R P
Sbjct: 234 SVVFVSFGSEAFLSEDQIHQLALGVEASGIPFLWCLRFP 350
>gb|DR093736.1|DR093736 STRR1_10_D02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_10_D02_A033 3', mRNA sequence
Length = 780
Score = 116 bits (248), Expect(2) = 4e-037
Identities = 46/78 (58%), Positives = 59/78 (75%)
Frame = +3 / +2
Query: 120 ADAAPGQGTGGLPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSR 299
+D+A G LPEGFE R + RGLV +GWV Q R+L+H S+GGFL+HAGW+S+ E LS
Sbjct: 155 SDSARDDPVGILPEGFEIRTHDRGLVVQGWVSQVRILSHPSIGGFLSHAGWSSVMESLSF 334
Query: 300 GVTMVLLPLMFDQGLNAR 353
G+ ++LLPL DQGLNAR
Sbjct: 335 GIPLILLPLRLDQGLNAR 388
Score = 58.3 bits (121), Expect(2) = 4e-037
Identities = 23/39 (58%), Positives = 30/39 (76%)
Frame = +3 / +2
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPP 119
SVV+ +FGSEA L+ Q+ +ALG+EASG+PFLW R P
Sbjct: 32 SVVFVSFGSEAFLSEDQIHQLALGVEASGIPFLWCLRFP 148
>gb|DR743885.1|DR743885 RTCU1_18_F04.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_18_F04_A029 5', mRNA sequence
Length = 827
Score = 111 bits (236), Expect(2) = 5e-036
Identities = 42/66 (63%), Positives = 52/66 (78%)
Frame = +3 / +2
Query: 153 LPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPLMF 332
LPEGFE R RGLV +GWVP R+L+H S+GGFL+HAGW+S+ E LS G+ ++LLPL
Sbjct: 629 LPEGFEIRTQDRGLVVQGWVPXVRILSHSSIGGFLSHAGWSSVMESLSFGIPLILLPLRL 808
Query: 333 DQGLNA 350
DQGLNA
Sbjct: 809 DQGLNA 826
Score = 60.2 bits (125), Expect(2) = 5e-036
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = +3 / +2
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPPADAAPGQ 140
SVV+ +FGSEA L+ Q+ +ALGLEASG+PFLW R P + G+
Sbjct: 473 SVVFVSFGSEAFLSEDQIHELALGLEASGIPFLWCLRFPRYSDSGR 610
>gb|DR098127.1|DR098127 STRR1_39_F11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_39_F11_A033 3', mRNA sequence
Length = 709
Score = 150 bits (323), Expect = 7e-036
Identities = 61/121 (50%), Positives = 81/121 (66%)
Frame = +3 / +2
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPPADAAPGQGTGGLPEGFEERVN 182
SV+Y FGS+A L++ Q+Q +A GLEAS F+W R P P G +P+GFEER+
Sbjct: 89 SVIYICFGSQACLSNKQIQEMAEGLEASEESFIWVIRDPPSTMPANEYGVIPQGFEERMK 268
Query: 183 GRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPLMFDQGLNARLLM 362
GRGLV RGW PQ +L+H SVG FL+H GWNS E ++ GV M+ P+ DQ ++A LL+
Sbjct: 269 GRGLVIRGWAPQLLILSHPSVGAFLSHCGWNSTLESITLGVPMITWPMSADQYIDALLLV 448
Query: 363 D 365
D
Sbjct: 449 D 451
>gb|BX678334.1|BX678334 BX678334 RN Pinus pinaster cDNA clone RN69G06, mRNA sequence
Length = 591
Score = 108 bits (231), Expect(3) = 7e-036
Identities = 40/67 (59%), Positives = 52/67 (77%)
Frame = +3 / +2
Query: 153 LPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPLMF 332
LPEGF+ R GLV GWVPQ R+L+H S+GGFL+H+GW+S+ E LS G+ ++LLP+
Sbjct: 242 LPEGFQNRTQDWGLVVEGWVPQVRILSHPSIGGFLSHSGWSSVMESLSFGIPLILLPIQA 421
Query: 333 DQGLNAR 353
DQGLNAR
Sbjct: 422 DQGLNAR 442
Score = 57.4 bits (119), Expect(3) = 7e-036
Identities = 23/39 (58%), Positives = 29/39 (74%)
Frame = +3 / +2
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPP 119
SVV+ +FGSE L+ Q+ +ALGLEA+GLPFLW R P
Sbjct: 86 SVVFVSFGSEVFLSEHQIHELALGLEATGLPFLWCLRFP 202
Score = 22.6 bits (43), Expect(3) = 7e-036
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3 / +2
Query: 369 KIGIEVERNED 401
K GIE+ER ED
Sbjct: 461 KAGIEIERGED 493
>gb|CO160820.1|CO160820 FLD1_24_E03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_24_E03_A029 5', mRNA sequence
Length = 725
Score = 116 bits (247), Expect(2) = 2e-035
Identities = 45/78 (57%), Positives = 58/78 (74%)
Frame = +3 / -2
Query: 120 ADAAPGQGTGGLPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSR 299
+D+ G LPEGFE R RGLV +GWVPQ ++L+H S+GGFL+HAGW+S+ E LS
Sbjct: 616 SDSGRDDPVGILPEGFEIRTQDRGLVVQGWVPQVQILSHPSIGGFLSHAGWSSVMESLSF 437
Query: 300 GVTMVLLPLMFDQGLNAR 353
G+ ++LLPL DQGLNAR
Sbjct: 436 GIPLILLPLRLDQGLNAR 383
Score = 53.3 bits (110), Expect(2) = 2e-035
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +3 / -2
Query: 18 AFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPPADAAPGQ 140
+FGSEA L+ Q+ +ALGLEASG+PFLW R P + G+
Sbjct: 724 SFGSEAFLSEDQIHQLALGLEASGIPFLWCLRFPRYSDSGR 602
>gb|DR181620.1|DR181620 RTMNUT1_40_B04.b2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_40_B04_A029 3', mRNA sequence
Length = 778
Score = 110 bits (234), Expect(2) = 3e-035
Identities = 44/80 (55%), Positives = 56/80 (70%)
Frame = +3 / -3
Query: 123 DAAPGQGTGGLPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRG 302
D+A G LPEGFE R RGLV RGWVPQ R+++H SVGG+L+H GW+S E LS G
Sbjct: 335 DSAGGDPQELLPEGFETRTGDRGLVVRGWVPQVRIVSHPSVGGYLSHGGWSSAMEALSFG 156
Query: 303 VTMVLLPLMFDQGLNARLLM 362
V ++LLP+ DQ LN R ++
Sbjct: 155 VPLILLPVKLDQSLNTRQIV 96
Score = 58.8 bits (122), Expect(2) = 3e-035
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = +3 / -3
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPP 119
SVV+ +FGSE L+ Q +ALGLEASGLPFLW+ R P
Sbjct: 461 SVVFVSFGSETFLSREQTYQLALGLEASGLPFLWSLRAP 345
>gb|DR745804.1|DR745804 RTCU1_32_D10.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_32_D10_A029 5', mRNA sequence
Length = 462
Score = 110 bits (234), Expect(3) = 3e-035
Identities = 42/67 (62%), Positives = 51/67 (76%)
Frame = +3 / +2
Query: 153 LPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPLMF 332
LPEGFE R RGLV RGWVPQ R+L+H S+GG+L+H GW+S E LS G+ ++LLPL
Sbjct: 179 LPEGFETRTRDRGLVVRGWVPQTRILSHGSIGGYLSHGGWSSAMEALSCGLPLILLPLRL 358
Query: 333 DQGLNAR 353
D GLNAR
Sbjct: 359 DHGLNAR 379
Score = 52.4 bits (108), Expect(3) = 3e-035
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = +3 / +2
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPP 119
SVV+ +FGSE L+ Q IA GLE +G+PFLW+ R P
Sbjct: 35 SVVFVSFGSETFLSREQACVIAFGLEMNGVPFLWSLRAP 151
Score = 24.4 bits (47), Expect(3) = 3e-035
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / +2
Query: 351 RLLMDKKIGIEVERNED 401
++ M+ K GIE+ER +D
Sbjct: 380 QITMELKAGIEIERGDD 430
>gb|CV035264.1|CV035264 RTNACL1_14_H03.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_14_H03_A029 5', mRNA sequence
Length = 780
Score = 148 bits (318), Expect = 3e-035
Identities = 59/121 (48%), Positives = 82/121 (67%)
Frame = +3 / -1
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPPADAAPGQGTGGLPEGFEERVN 182
SV+Y FGS+A L++ Q+Q +A GLEAS F+ R P + PG G +P+GFE+R+
Sbjct: 756 SVIYICFGSQACLSNKQIQEMAAGLEASEESFILVIRDPPNGMPGDEYGAIPQGFEDRMR 577
Query: 183 GRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPLMFDQGLNARLLM 362
GRGL+ +GW PQ +L+H SVG FLTH GWNS E ++ GV ++ P+ DQ +NA LL+
Sbjct: 576 GRGLIIKGWAPQLLILSHPSVGVFLTHCGWNSTLESITLGVPLITWPMTADQYINALLLV 397
Query: 363 D 365
D
Sbjct: 396 D 394
>gb|CO368306.1|CO368306 RTK1_39_G08.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_39_G08_A029 5', mRNA sequence
Length = 866
Score = 107 bits (228), Expect(3) = 6e-035
Identities = 41/67 (61%), Positives = 50/67 (74%)
Frame = +3 / -2
Query: 153 LPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPLMF 332
LPEGFE R GLV RGWVPQ R+L+H S+GG+L+H GW+S E LS G+ ++LLPL
Sbjct: 643 LPEGFETRTRDHGLVVRGWVPQMRILSHGSIGGYLSHGGWSSAMEALSCGLPLILLPLRL 464
Query: 333 DQGLNAR 353
D GLNAR
Sbjct: 463 DHGLNAR 443
Score = 53.8 bits (111), Expect(3) = 6e-035
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = +3 / -2
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPP 119
SVV+ +FGSE L+ Q IA GLE SG+PFLW+ R P
Sbjct: 787 SVVFVSFGSETFLSREQACVIAFGLEMSGVPFLWSLRAP 671
Score = 24.4 bits (47), Expect(3) = 6e-035
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / -2
Query: 351 RLLMDKKIGIEVERNED 401
++ M+ K GIE+ER +D
Sbjct: 442 QITMELKAGIEIERGDD 392
>gb|CO368218.1|CO368218 RTK1_39_G08.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_39_G08_A029 3', mRNA sequence
Length = 807
Score = 107 bits (228), Expect(3) = 6e-035
Identities = 41/67 (61%), Positives = 50/67 (74%)
Frame = +3 / -1
Query: 153 LPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPLMF 332
LPEGFE R GLV RGWVPQ R+L+H S+GG+L+H GW+S E LS G+ ++LLPL
Sbjct: 408 LPEGFETRTRDHGLVVRGWVPQMRILSHGSIGGYLSHGGWSSAMEALSCGLPLILLPLRL 229
Query: 333 DQGLNAR 353
D GLNAR
Sbjct: 228 DHGLNAR 208
Score = 53.8 bits (111), Expect(3) = 6e-035
Identities = 22/39 (56%), Positives = 27/39 (69%)
Frame = +3 / -1
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPP 119
SVV+ +FGSE L+ Q IA GLE SG+PFLW+ R P
Sbjct: 552 SVVFVSFGSETFLSREQACVIAFGLEMSGVPFLWSLRAP 436
Score = 24.4 bits (47), Expect(3) = 6e-035
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / -1
Query: 351 RLLMDKKIGIEVERNED 401
++ M+ K GIE+ER +D
Sbjct: 207 QITMELKAGIEIERGDD 157
>gb|BX249942.1|BX249942 BX249942 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP030E10, mRNA sequence
Length = 626
Score = 110 bits (234), Expect(2) = 1e-034
Identities = 42/71 (59%), Positives = 51/71 (71%)
Frame = +3 / +1
Query: 147 GGLPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPL 326
G LPEGF R RGLV +GWVPQ R+L+H SVGGFL+H GWNS E L G ++ LP+
Sbjct: 343 GLLPEGFVTRTQDRGLVVQGWVPQARILSHSSVGGFLSHGGWNSTMESLGFGKPLIFLPI 522
Query: 327 MFDQGLNARLL 359
+DQG NARL+
Sbjct: 523 QYDQGFNARLI 555
Score = 56.5 bits (117), Expect(2) = 1e-034
Identities = 21/39 (53%), Positives = 28/39 (71%)
Frame = +3 / +1
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPP 119
S ++ +FG+E L+ Q+Q +ALGLEASG PFLW R P
Sbjct: 193 SAIFVSFGTEVVLSGEQIQELALGLEASGFPFLWCLRFP 309
>gb|CO367983.1|CO367983 RTK1_37_H12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_37_H12_A029 5', mRNA sequence
Length = 774
Score = 100 bits (214), Expect(4) = 2e-034
Identities = 38/69 (55%), Positives = 50/69 (72%)
Frame = +3 / +1
Query: 153 LPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPLMF 332
LPEGF R RGLV WVPQ R+L+H SV GFL+H GW+S E LS G+ ++ LP+ +
Sbjct: 160 LPEGFVIRTEDRGLVVHRWVPQARILSHSSVRGFLSHGGWSSTIESLSFGIPLIFLPIQY 339
Query: 333 DQGLNARLL 359
DQG+NA+L+
Sbjct: 340 DQGVNAQLI 366
Score = 58.8 bits (122), Expect(4) = 2e-034
Identities = 25/46 (54%), Positives = 31/46 (67%)
Frame = +3 / +1
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPPADAAPGQ 140
SVV+ +FGSE L+ Q+Q +ALG EASG PFLW R P + GQ
Sbjct: 4 SVVFVSFGSEVFLSRYQIQELALGFEASGFPFLWCLRFPRYSDVGQ 141
Score = 22.6 bits (43), Expect(4) = 2e-034
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3 / +1
Query: 369 KIGIEVERNED 401
K GIE+ER ED
Sbjct: 379 KAGIEIERGED 411
Score = 21.7 bits (41), Expect(4) = 2e-034
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3 / +1
Query: 399 DDGTFAPKDIADALRTAMA 455
+DG+F + IA L AMA
Sbjct: 406 EDGSFLREKIAKTLTAAMA 462
>gb|CO201704.1|CO201704 RTCNT2_7_C09.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_7_C09_A029 5', mRNA sequence
Length = 752
Score = 109 bits (233), Expect(3) = 6e-034
Identities = 42/67 (62%), Positives = 51/67 (76%)
Frame = +3 / -2
Query: 153 LPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPLMF 332
LPEGFE R RGLV RGWVPQ R+L+H S+GG+L+H GW+S E LS G+ ++LLPL
Sbjct: 619 LPEGFETRTRDRGLVVRGWVPQMRILSHGSIGGYLSHGGWSSAMEALSCGLPLILLPLRL 440
Query: 333 DQGLNAR 353
D GLNAR
Sbjct: 439 DHGLNAR 419
Score = 48.3 bits (99), Expect(3) = 6e-034
Identities = 20/34 (58%), Positives = 23/34 (67%)
Frame = +3 / -2
Query: 18 AFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPP 119
+FGSE L+ Q IA GLE SGLPFLW+ R P
Sbjct: 748 SFGSETFLSREQACVIAFGLEMSGLPFLWSLRAP 647
Score = 24.4 bits (47), Expect(3) = 6e-034
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / -2
Query: 351 RLLMDKKIGIEVERNED 401
++ M+ K GIE+ER +D
Sbjct: 418 QITMELKAGIEIERGDD 368
>gb|CO163860.1|CO163860 FLD1_44_F02.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_44_F02_A029 3', mRNA sequence
Length = 733
Score = 143 bits (306), Expect = 2e-033
Identities = 58/115 (50%), Positives = 77/115 (66%)
Frame = +3 / +3
Query: 21 FGSEAKLTSAQLQTIALGLEASGLPFLWAFRPPADAAPGQGTGGLPEGFEERVNGRGLVC 200
FGS+A L++ Q+Q +A GLEAS F+W R P P G +P+GFEER+ GRGLV
Sbjct: 3 FGSQACLSNKQIQEMAEGLEASEESFIWVIRDPPSTMPANEYGVIPQGFEERMKGRGLVI 182
Query: 201 RGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPLMFDQGLNARLLMD 365
RGW PQ +L+H SVG FL+H GWNS E ++ GV M+ P+ DQ ++A LL+D
Sbjct: 183 RGWAPQLLILSHPSVGAFLSHCGWNSTLESITLGVPMITWPMSADQYIDALLLVD 347
>gb|DR180778.1|DR180778 RTMNUT1_34_F12.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_34_F12_A029 5', mRNA sequence
Length = 797
Score = 105 bits (225), Expect(3) = 2e-033
Identities = 41/67 (61%), Positives = 50/67 (74%)
Frame = +3 / -2
Query: 153 LPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPLMF 332
LPEGFE R RGLV R WVPQ R+L+H S+GG+L+H GW+S E LS G+ ++LLPL
Sbjct: 445 LPEGFETRTRDRGLVARCWVPQMRILSHGSIGGYLSHGGWSSAMEALSCGLPLILLPLRL 266
Query: 333 DQGLNAR 353
D GLNAR
Sbjct: 265 DHGLNAR 245
Score = 55.6 bits (115), Expect(3) = 2e-033
Identities = 23/39 (58%), Positives = 28/39 (71%)
Frame = +3 / -2
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPP 119
SVV+ +FGSE L+ Q IALGLE SG+PFLW+ R P
Sbjct: 589 SVVFVSFGSETFLSREQACVIALGLEMSGVPFLWSLRAP 473
Score = 21.7 bits (41), Expect(3) = 2e-033
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +3 / -2
Query: 351 RLLMDKKIGIEVERNE 398
++ M+ K GIE+ER +
Sbjct: 244 QITMELKAGIEIERGD 197
>gb|CX646003.1|CX646003 COLD1_6_D11.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_6_D11_A029 5', mRNA sequence
Length = 691
Score = 86.3 bits (182), Expect(4) = 3e-033
Identities = 32/70 (45%), Positives = 45/70 (64%)
Frame = +3 / +2
Query: 159 EGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPLMFDQ 338
+GF R RG + GW Q +L+H SVG F+TH GWNS E +S GV ++ PL DQ
Sbjct: 194 DGFYRRTEHRGRIVSGWTDQLAILSHRSVGAFITHCGWNSALEAISMGVPLICWPLFADQ 373
Query: 339 GLNARLLMDK 368
LNA+L++++
Sbjct: 374 HLNAKLIVEE 403
Score = 58.8 bits (122), Expect(4) = 3e-033
Identities = 23/39 (58%), Positives = 31/39 (79%)
Frame = +3 / +2
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPP 119
SVVY +FGSE+ ++S+Q+ +ALGLEASG PFLW + P
Sbjct: 50 SVVYVSFGSESLISSSQIIELALGLEASGKPFLWVLKLP 166
Score = 29.5 bits (58), Expect(4) = 3e-033
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3 / +2
Query: 354 LLMDKKIGIEVERNEDDGTFAPKDIADALRTAMAENQDG 470
++ + K+GIEV R E+D +I + T M ++ G
Sbjct: 392 IVEEVKVGIEVVRREEDEMVTRDEIEKCVGTLMGDDHSG 508
Score = 22.6 bits (43), Expect(4) = 3e-033
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +1 / +3
Query: 463 KTGLGSRNWPR 495
KT SRNWPR
Sbjct: 534 KTVKSSRNWPR 566
>gb|CF663283.1|CF663283 RTCNT1_1_H12.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_1_H12_A029 5', mRNA sequence
Length = 797
Score = 116 bits (248), Expect(2) = 4e-033
Identities = 45/78 (57%), Positives = 59/78 (75%)
Frame = +3 / +1
Query: 120 ADAAPGQGTGGLPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSR 299
+D+ G LPEGFE R + RGLV +GWVPQ R+L+H S+GGFL+HAGW+S+ E LS
Sbjct: 346 SDSGRDDPVGILPEGFEIRTHDRGLVVQGWVPQVRILSHPSIGGFLSHAGWSSVMESLSF 525
Query: 300 GVTMVLLPLMFDQGLNAR 353
G+ ++LLPL +QGLNAR
Sbjct: 526 GIPLILLPLRLEQGLNAR 579
Score = 45.1 bits (92), Expect(2) = 4e-033
Identities = 18/31 (58%), Positives = 25/31 (80%)
Frame = +3 / +3
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLP 95
SVV+ +FGSEA L+ Q+ +ALG+EASG+P
Sbjct: 222 SVVFVSFGSEAFLSEDQIHQLALGVEASGIP 314
>gb|CO362361.1|CO362361 RTK1_3_C10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_3_C10_A029 3', mRNA sequence
Length = 680
Score = 95.0 bits (201), Expect(2) = 4e-033
Identities = 37/72 (51%), Positives = 50/72 (69%)
Frame = +3 / +2
Query: 153 LPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPLMF 332
LP+G+E+R+ R LV W PQ +LAHE+ G F+TH GWNS E ++ GV M+ LPL
Sbjct: 218 LPDGYEQRIGARCLVECQWAPQAAILAHEASGAFITHCGWNSALESVAAGVPMIALPLQS 397
Query: 333 DQGLNARLLMDK 368
DQ LNA LL+++
Sbjct: 398 DQPLNALLLVEE 433
Score = 66.6 bits (139), Expect(2) = 4e-033
Identities = 27/48 (56%), Positives = 34/48 (70%)
Frame = +3 / +2
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPPADAAPGQGT 146
SVVY +FGSE+ L+ AQ++ +ALGLEASG PFLW RPP G +
Sbjct: 44 SVVYISFGSESYLSRAQVRELALGLEASGQPFLWVLRPPDSKLTGHSS 187
>gb|DN458892.1|DN458892 EST954691 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHG92 5' end, mRNA sequence
Length = 942
Score = 104 bits (222), Expect(3) = 5e-033
Identities = 40/79 (50%), Positives = 51/79 (64%)
Frame = +3 / +3
Query: 126 AAPGQGTGGLPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGV 305
A G+ LPE F ER+ RGLV W PQ +L+H S G FLTH GW+S+ EG+S G+
Sbjct: 483 AGSAHGSASLPEDFGERIGDRGLVLTDWAPQKEILSHSSTGAFLTHCGWSSVMEGMSVGL 662
Query: 306 TMVLLPLMFDQGLNARLLM 362
+ LP DQGLNARL++
Sbjct: 663 PFIALPTRQDQGLNARLIV 719
Score = 51.9 bits (107), Expect(3) = 5e-033
Identities = 20/34 (58%), Positives = 30/34 (88%)
Frame = +3 / +3
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLW 104
SVV+A+FGS+ L++A++Q +ALGLEASG PF++
Sbjct: 369 SVVFASFGSQCFLSNAEIQEVALGLEASGQPFIF 470
Score = 22.6 bits (43), Expect(3) = 5e-033
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1 / +1
Query: 436 L*GRPWRRTKTGLGSR 483
L*GR WRR + +G +
Sbjct: 793 L*GRSWRRKREKMGRK 840
>gb|DT626677.1|DT626677 EST1159753 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAQ07 5' end, mRNA sequence
Length = 897
Score = 104 bits (222), Expect(3) = 5e-033
Identities = 40/79 (50%), Positives = 51/79 (64%)
Frame = +3 / +3
Query: 126 AAPGQGTGGLPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGV 305
A G+ LPE F ER+ RGLV W PQ +L+H S G FLTH GW+S+ EG+S G+
Sbjct: 483 AGSAHGSASLPEDFGERIGDRGLVLTDWAPQKEILSHSSTGAFLTHCGWSSVMEGMSVGL 662
Query: 306 TMVLLPLMFDQGLNARLLM 362
+ LP DQGLNARL++
Sbjct: 663 PFIALPTRQDQGLNARLIV 719
Score = 51.9 bits (107), Expect(3) = 5e-033
Identities = 20/34 (58%), Positives = 30/34 (88%)
Frame = +3 / +3
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLW 104
SVV+A+FGS+ L++A++Q +ALGLEASG PF++
Sbjct: 369 SVVFASFGSQCFLSNAEIQEVALGLEASGQPFIF 470
Score = 22.6 bits (43), Expect(3) = 5e-033
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1 / +1
Query: 436 L*GRPWRRTKTGLGSR 483
L*GR WRR + +G +
Sbjct: 793 L*GRSWRRKREKMGRK 840
>gb|CO162696.1|CO162696 FLD1_37_A08.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_37_A08_A029 3', mRNA sequence
Length = 845
Score = 104 bits (222), Expect(3) = 5e-033
Identities = 40/79 (50%), Positives = 51/79 (64%)
Frame = +3 / +1
Query: 126 AAPGQGTGGLPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGV 305
A G+ LPE F ER+ RGLV W PQ +L+H S G FLTH GW+S+ EG+S G+
Sbjct: 115 AGSAHGSASLPEDFGERIGDRGLVLTDWAPQKEILSHSSTGAFLTHCGWSSVMEGMSVGL 294
Query: 306 TMVLLPLMFDQGLNARLLM 362
+ LP DQGLNARL++
Sbjct: 295 PFIALPTRQDQGLNARLIV 351
Score = 51.9 bits (107), Expect(3) = 5e-033
Identities = 20/34 (58%), Positives = 30/34 (88%)
Frame = +3 / +1
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLW 104
SVV+A+FGS+ L++A++Q +ALGLEASG PF++
Sbjct: 1 SVVFASFGSQCFLSNAEIQEVALGLEASGQPFIF 102
Score = 22.6 bits (43), Expect(3) = 5e-033
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1 / +2
Query: 436 L*GRPWRRTKTGLGSR 483
L*GR WRR + +G +
Sbjct: 425 L*GRSWRRKREKMGRK 472
>gb|DR095142.1|DR095142 STRR1_19_C05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_19_C05_A033 3', mRNA sequence
Length = 932
Score = 95.0 bits (201), Expect(2) = 5e-033
Identities = 38/69 (55%), Positives = 46/69 (66%)
Frame = +3 / +2
Query: 153 LPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPLMF 332
LPEGFE R+ GR L+ GW PQ +LAHE+ G F+TH GWNS+ E ++ GV MV LP
Sbjct: 446 LPEGFERRLEGRCLIETGWAPQAAILAHEATGAFITHCGWNSVQESVAAGVPMVALPQQS 625
Query: 333 DQGLNARLL 359
DQ A LL
Sbjct: 626 DQPAIALLL 652
Score = 66.1 bits (138), Expect(2) = 5e-033
Identities = 26/39 (66%), Positives = 32/39 (82%)
Frame = +3 / +2
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPP 119
SVVY +FGSE+ ++SAQ+ +ALGLEASG PFLW RPP
Sbjct: 278 SVVYVSFGSESFISSAQVTELALGLEASGQPFLWVLRPP 394
>gb|CF385056.1|CF385056 RTDR1_1_E08.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_1_E08_A015 5', mRNA
sequence
Length = 718
Score = 97.3 bits (206), Expect(2) = 1e-032
Identities = 39/69 (56%), Positives = 47/69 (68%)
Frame = +3 / +3
Query: 153 LPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPLMF 332
LPEG+E+RV GR L+ GW PQ +LAHE+ G F+TH GWNS E + GV M+ LPL
Sbjct: 297 LPEGYEKRVEGRCLIETGWAPQAAILAHEATGAFITHCGWNSALESVFAGVPMIALPLQS 476
Query: 333 DQGLNARLL 359
DQ NA LL
Sbjct: 477 DQPGNALLL 503
Score = 62.5 bits (130), Expect(2) = 1e-032
Identities = 24/39 (61%), Positives = 31/39 (79%)
Frame = +3 / +3
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPP 119
SVVY +FG+E+ ++ AQ+ +ALGLEASG PFLW RPP
Sbjct: 120 SVVYLSFGTESYISPAQVTELALGLEASGQPFLWVLRPP 236
>gb|CF386347.1|CF386347 RTDR1_13_F04.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_13_F04_A015 5', mRNA
sequence
Length = 649
Score = 97.3 bits (206), Expect(2) = 1e-032
Identities = 39/69 (56%), Positives = 47/69 (68%)
Frame = +3 / +3
Query: 153 LPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPLMF 332
LPEG+E+RV GR L+ GW PQ +LAHE+ G F+TH GWNS E + GV M+ LPL
Sbjct: 291 LPEGYEKRVEGRCLIETGWAPQAAILAHEATGAFITHCGWNSALESVFAGVPMIALPLQS 470
Query: 333 DQGLNARLL 359
DQ NA LL
Sbjct: 471 DQPGNALLL 497
Score = 62.5 bits (130), Expect(2) = 1e-032
Identities = 24/39 (61%), Positives = 31/39 (79%)
Frame = +3 / +3
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPP 119
SVVY +FG+E+ ++ AQ+ +ALGLEASG PFLW RPP
Sbjct: 114 SVVYLSFGTESYISPAQVTELALGLEASGQPFLWVLRPP 230
>gb|CF470340.1|CF470340 RTDS1_18_D11.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_18_D11_A015 5', mRNA sequence
Length = 679
Score = 95.5 bits (202), Expect(2) = 2e-032
Identities = 37/71 (52%), Positives = 48/71 (67%)
Frame = +3 / +1
Query: 147 GGLPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPL 326
G LPEG+E R+ GR L+ GW PQ +LAHE+ G F++H GWNS E ++ GV ++ LPL
Sbjct: 196 GLLPEGYERRLQGRCLIETGWAPQGAILAHEATGAFISHCGWNSCLESVAAGVPIIALPL 375
Query: 327 MFDQGLNARLL 359
DQ NA LL
Sbjct: 376 QVDQPANALLL 408
Score = 63.8 bits (133), Expect(2) = 2e-032
Identities = 24/39 (61%), Positives = 31/39 (79%)
Frame = +3 / +1
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPP 119
SVVY +FG+EA ++ AQ+ +A+GLEASG PFLW RPP
Sbjct: 31 SVVYVSFGTEACISPAQIMELAMGLEASGQPFLWVLRPP 147
>gb|DR181702.1|DR181702 RTMNUT1_40_B04.g2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_40_B04_A029 5', mRNA sequence
Length = 712
Score = 110 bits (234), Expect(2) = 3e-032
Identities = 44/80 (55%), Positives = 56/80 (70%)
Frame = +3 / -3
Query: 123 DAAPGQGTGGLPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRG 302
D+A G LPEGFE R RGLV RGWVPQ R+++H SVGG+L+H GW+S E LS G
Sbjct: 605 DSAGGDPQELLPEGFETRTGDRGLVVRGWVPQVRIVSHPSVGGYLSHGGWSSAMEALSFG 426
Query: 303 VTMVLLPLMFDQGLNARLLM 362
V ++LLP+ DQ LN R ++
Sbjct: 425 VPLILLPVKLDQSLNTRQIV 366
Score = 48.7 bits (100), Expect(2) = 3e-032
Identities = 20/32 (62%), Positives = 23/32 (71%)
Frame = +3 / -3
Query: 24 GSEAKLTSAQLQTIALGLEASGLPFLWAFRPP 119
GSE L+ Q +ALGLEASGLPFLW+ R P
Sbjct: 710 GSETFLSREQTYQLALGLEASGLPFLWSLRAP 615
>gb|CO370290.1|CO370290 RTK1_67_A02.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_67_A02_A029 3', mRNA sequence
Length = 782
Score = 107 bits (228), Expect(3) = 4e-032
Identities = 41/67 (61%), Positives = 50/67 (74%)
Frame = +3 / +1
Query: 153 LPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPLMF 332
LPEGFE R GLV RGWVPQ R+L+H S+GG+L+H GW+S E LS G+ ++LLPL
Sbjct: 127 LPEGFETRTRDHGLVVRGWVPQMRILSHGSIGGYLSHGGWSSAMEALSCGLPLILLPLRL 306
Query: 333 DQGLNAR 353
D GLNAR
Sbjct: 307 DHGLNAR 327
Score = 44.1 bits (90), Expect(3) = 4e-032
Identities = 18/33 (54%), Positives = 21/33 (63%)
Frame = +3 / +1
Query: 21 FGSEAKLTSAQLQTIALGLEASGLPFLWAFRPP 119
FGSE L+ Q IA G E SG+PFLW+ R P
Sbjct: 1 FGSETFLSREQACVIAFGXEMSGVPFLWSLRAP 99
Score = 24.4 bits (47), Expect(3) = 4e-032
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / +1
Query: 351 RLLMDKKIGIEVERNED 401
++ M+ K GIE+ER +D
Sbjct: 328 QITMELKAGIEIERGDD 378
>gb|CV134798.1|CV134798 EST846007 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PICCF64 5' end, mRNA sequence
Length = 811
Score = 95.5 bits (202), Expect(2) = 6e-032
Identities = 37/71 (52%), Positives = 48/71 (67%)
Frame = +3 / +2
Query: 147 GGLPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPL 326
G LPEG+E R+ GR L+ GW PQ +LAHE+ G F++H GWNS E ++ GV ++ LPL
Sbjct: 203 GLLPEGYERRLQGRCLIETGWAPQGAILAHEATGAFISHCGWNSCLESVAAGVPIIALPL 382
Query: 327 MFDQGLNARLL 359
DQ NA LL
Sbjct: 383 QVDQPANALLL 415
Score = 62.0 bits (129), Expect(2) = 6e-032
Identities = 23/39 (58%), Positives = 30/39 (76%)
Frame = +3 / +2
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPP 119
SVVY +FG+E ++ AQ+ +A+GLEASG PFLW RPP
Sbjct: 38 SVVYVSFGTETCISPAQIMELAMGLEASGQPFLWVLRPP 154
>gb|CO197579.1|CO197579 GEO1_7_A12.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_7_A12_A029 5', mRNA sequence
Length = 788
Score = 116 bits (247), Expect(2) = 6e-032
Identities = 45/78 (57%), Positives = 58/78 (74%)
Frame = +3 / -2
Query: 120 ADAAPGQGTGGLPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSR 299
+D+ G LPEGFE R RGLV +GWVPQ ++L+H S+GGFL+HAGW+S+ E LS
Sbjct: 709 SDSGRDDPVGILPEGFEIRTQDRGLVVQGWVPQVQILSHPSIGGFLSHAGWSSVMESLSF 530
Query: 300 GVTMVLLPLMFDQGLNAR 353
G+ ++LLPL DQGLNAR
Sbjct: 529 GIPLILLPLRLDQGLNAR 476
Score = 41.4 bits (84), Expect(2) = 6e-032
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3 / -2
Query: 51 QLQTIALGLEASGLPFLWAFRPPADAAPGQ 140
Q+ +ALGLEASG+PFLW R P + G+
Sbjct: 784 QIHQLALGLEASGIPFLWCLRFPRYSDSGR 695
>gb|DR389094.1|DR389094 RTHG1_32_H10.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_32_H10_A029 3', mRNA sequence
Length = 776
Score = 116 bits (247), Expect(2) = 6e-032
Identities = 44/67 (65%), Positives = 54/67 (80%)
Frame = +3 / +1
Query: 153 LPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPLMF 332
LPEGFE R RGLV +GWVPQ R+L+H S+GGFL+HAGW+S+ E LS G+ ++LLPL
Sbjct: 109 LPEGFEIRTQDRGLVVQGWVPQVRILSHSSIGGFLSHAGWSSVMESLSFGIPLILLPLRL 288
Query: 333 DQGLNAR 353
DQGLNAR
Sbjct: 289 DQGLNAR 309
Score = 41.4 bits (84), Expect(2) = 6e-032
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3 / +1
Query: 51 QLQTIALGLEASGLPFLWAFRPPADAAPGQ 140
Q+ +ALGLEASG+PFLW R P + G+
Sbjct: 1 QIHELALGLEASGIPFLWCLRFPRYSDSGR 90
>gb|DT625926.1|DT625926 EST1157850 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA522 5' end, mRNA sequence
Length = 773
Score = 95.5 bits (202), Expect(2) = 6e-032
Identities = 37/71 (52%), Positives = 48/71 (67%)
Frame = +3 / +1
Query: 147 GGLPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPL 326
G LPEG+E R+ GR L+ GW PQ +LAHE+ G F++H GWNS E ++ GV ++ LPL
Sbjct: 166 GLLPEGYERRLQGRCLIETGWAPQGAILAHEATGAFISHCGWNSCLESVAAGVPIIALPL 345
Query: 327 MFDQGLNARLL 359
DQ NA LL
Sbjct: 346 QVDQPANALLL 378
Score = 62.0 bits (129), Expect(2) = 6e-032
Identities = 23/39 (58%), Positives = 30/39 (76%)
Frame = +3 / +1
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPP 119
SVVY +FG+E ++ AQ+ +A+GLEASG PFLW RPP
Sbjct: 1 SVVYVSFGTETCISPAQIMELAMGLEASGQPFLWVLRPP 117
>gb|DR017842.1|DR017842 STRS1_18_G07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_18_G07_A034 5', mRNA sequence
Length = 772
Score = 116 bits (247), Expect(2) = 4e-031
Identities = 44/67 (65%), Positives = 54/67 (80%)
Frame = +3 / -1
Query: 153 LPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPLMF 332
LPEGFE R RGLV +GWVPQ R+L+H S+GGFL+HAGW+S+ E LS G+ ++LLPL
Sbjct: 676 LPEGFEIRTQDRGLVVQGWVPQVRILSHSSIGGFLSHAGWSSVMESLSFGIPLILLPLRL 497
Query: 333 DQGLNAR 353
DQGLNAR
Sbjct: 496 DQGLNAR 476
Score = 38.6 bits (78), Expect(2) = 4e-031
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +3 / -1
Query: 63 IALGLEASGLPFLWAFRPPADAAPGQ 140
+ALGLEASG+PFLW R P + G+
Sbjct: 772 LALGLEASGIPFLWCLRFPRYSDSGR 695
>gb|CO196958.1|CO196958 GEO1_2_H08.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_2_H08_A029 5', mRNA sequence
Length = 787
Score = 104 bits (222), Expect(2) = 8e-031
Identities = 38/70 (54%), Positives = 51/70 (72%)
Frame = +3 / -3
Query: 153 LPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPLMF 332
LPE F ER+ RGLV W PQ +L+H S G FLTH GW+S+ EG+S G+ ++ LP+ +
Sbjct: 557 LPEDFGERIGDRGLVLTDWAPQKEILSHSSTGAFLTHCGWSSVMEGMSVGLPLIALPMQW 378
Query: 333 DQGLNARLLM 362
DQGLNARL++
Sbjct: 377 DQGLNARLIV 348
Score = 49.2 bits (101), Expect(2) = 8e-031
Identities = 19/33 (57%), Positives = 28/33 (84%)
Frame = +3 / -3
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFL 101
SVVYA+FG+E L+S +++ +A+GLEASG PF+
Sbjct: 701 SVVYASFGTECFLSSEEIREVAMGLEASGHPFI 603
>gb|CN785841.1|CN785841 EST784532 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAB423 5' end, mRNA sequence
Length = 719
Score = 109 bits (233), Expect(3) = 2e-030
Identities = 42/67 (62%), Positives = 51/67 (76%)
Frame = +3 / +3
Query: 153 LPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPLMF 332
LPEGFE R RGLV RGWVPQ R+L+H S+GG+L+H GW+S E LS G+ ++LLPL
Sbjct: 93 LPEGFETRTRDRGLVVRGWVPQMRILSHGSIGGYLSHGGWSSAMEALSCGLPLILLPLRL 272
Query: 333 DQGLNAR 353
D GLNAR
Sbjct: 273 DHGLNAR 293
Score = 36.3 bits (73), Expect(3) = 2e-030
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3 / +3
Query: 63 IALGLEASGLPFLWAFRPP 119
IA GLE SG+PFLW+ R P
Sbjct: 9 IAFGLEMSGVPFLWSLRAP 65
Score = 24.4 bits (47), Expect(3) = 2e-030
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3 / +3
Query: 351 RLLMDKKIGIEVERNED 401
++ M+ K GIE+ER +D
Sbjct: 294 QITMELKAGIEIERGDD 344
>gb|DR052787.1|DR052787 RTCA1_6_H02.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_6_H02_A029 5', mRNA sequence
Length = 756
Score = 87.7 bits (185), Expect(4) = 4e-030
Identities = 34/69 (49%), Positives = 49/69 (71%)
Frame = +3 / +2
Query: 147 GGLPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPL 326
G LPEGF+ R G++ VPQ ++++H +VGG+L HAGW+S E LS G+ ++L+P+
Sbjct: 374 GLLPEGFQTRTRDMGIITGEGVPQLQIVSHPAVGGYLCHAGWSSAMEALSFGLPLILVPI 553
Query: 327 MFDQGLNAR 353
FDQ LNAR
Sbjct: 554 KFDQFLNAR 580
Score = 56.5 bits (117), Expect(4) = 4e-030
Identities = 23/39 (58%), Positives = 30/39 (76%)
Frame = +3 / +2
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPP 119
SVV+ +FGSE L+ Q++ +ALGLEASGL FLW+ R P
Sbjct: 242 SVVFVSFGSETFLSREQVRELALGLEASGLMFLWSLRSP 358
Score = 23.5 bits (45), Expect(4) = 4e-030
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +3 / +2
Query: 396 EDDGTFAPKDIADALRTAM 452
EDDG+F +++ + +R M
Sbjct: 623 EDDGSFLKENVCETVRMVM 679
Score = 21.7 bits (41), Expect(4) = 4e-030
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +3 / +2
Query: 351 RLLMDKKIGIEVERNED 401
++ + K GIE+ER +D
Sbjct: 581 QIAAELKAGIEIEREDD 631
>gb|BX681374.1|BX681374 BX681374 RS Pinus pinaster cDNA clone RS58A01, mRNA sequence
Length = 637
Score = 94.1 bits (199), Expect(2) = 7e-030
Identities = 40/115 (34%), Positives = 61/115 (53%)
Frame = +3 / +1
Query: 153 LPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPLMF 332
LPEGFE R RGLV W PQ +L+H S GGFL+H GWNS E + G+ M+ P+
Sbjct: 178 LPEGFESRTRDRGLVVPSWAPQTPVLSHPSTGGFLSHCGWNSSIESILHGLPMIAWPIFS 357
Query: 333 DQGLNARLLMDKKIGIEVERNEDDGTFAPKDIADALRTAMAENQDGTRVKELAEV 497
+Q +NA L+++K + +G + +++ +R M K + E+
Sbjct: 358 EQRMNAIFLVEEKQVAIEPKKGPNGLVSKEEVERVVRELMEGESGVETKKRMKEL 522
Score = 56.5 bits (117), Expect(2) = 7e-030
Identities = 23/44 (52%), Positives = 30/44 (68%)
Frame = +3 / +1
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPPADAAP 134
SV++ AFGSE L+ Q++ +ALGLE SG F+WA R PA P
Sbjct: 16 SVLFVAFGSEGTLSDDQVRELALGLETSGQRFIWALRGPAPIEP 147
>gb|BF778862.1|BF778862 NXSI_089_C07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_089_C07 5' similar to Arabidopsis thaliana
sequence At2g18570 putative flavonol
3-O-glucosyltransferase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 467
Score = 93.6 bits (198), Expect(2) = 2e-029
Identities = 37/67 (55%), Positives = 46/67 (68%)
Frame = +3 / +2
Query: 153 LPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPLMF 332
L EGFE R RGLV R WVPQ R+L+H S+GG+L+H GW+S E L G+ ++LLP
Sbjct: 266 LXEGFETRTRDRGLVARCWVPQMRVLSHGSIGGYLSHXGWSSAMEALXCGLPLILLPXXX 445
Query: 333 DQGLNAR 353
GLNAR
Sbjct: 446 XHGLNAR 466
Score = 55.6 bits (115), Expect(2) = 2e-029
Identities = 23/39 (58%), Positives = 28/39 (71%)
Frame = +3 / +2
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPP 119
SVV+ +FGSE L+ Q IALGLE SG+PFLW+ R P
Sbjct: 122 SVVFVSFGSETFLSREQACVIALGLEMSGVPFLWSLRAP 238
>gb|DR179487.1|DR179487 RTMNUT1_22_H11.b2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_22_H11_A029 3', mRNA sequence
Length = 754
Score = 85.8 bits (181), Expect(2) = 3e-029
Identities = 32/82 (39%), Positives = 48/82 (58%)
Frame = +3 / -2
Query: 153 LPEGFEERVNGRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPLMF 332
LP+G+E R+ R ++ W PQ +L H + G F+TH GWNS E + GV M+ LPL
Sbjct: 516 LPDGYERRLGTRCIIECVWAPQLTILGHRATGAFITHCGWNSALESVVAGVPMIALPLQT 337
Query: 333 DQGLNARLLMDKKIGIEVERNE 398
D NA +L + K+ +E+ +
Sbjct: 336 DGPANALILAEAKVAVEINMRD 271
Score = 62.5 bits (130), Expect(2) = 3e-029
Identities = 25/39 (64%), Positives = 29/39 (74%)
Frame = +3 / -2
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPP 119
SVVY + GSE L+ AQ+ +ALGLEASG PFLW RPP
Sbjct: 696 SVVYVSIGSELSLSPAQVTELALGLEASGQPFLWVLRPP 580
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 348,186,017
Number of Sequences: 355925
Number of extensions: 5568760
Number of successful extensions: 56952
Number of sequences better than 1.0e-020: 185
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 9058164360
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)