TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748380.2.1
(1272 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|U76726.1|PRU76726 Pinus radiata MADS-box protein (PrMADS... 124 3e-056
gb|U42400.1|PRU42400 Pinus radiata putative MADS-box family... 129 1e-050
gb|AW010398.1|AW010398 ST06D02 Pine TriplEx shoot tip libra... 127 7e-050
emb|Y09611.1|PRMADS1 P.resinosa mRNA for MADS-box protein 124 6e-049
gb|U42399.1|PRU42399 Pinus radiata putative MADS-box family... 140 8e-048
gb|BQ290846.1|BQ290846 NXRV050_D03_F NXRV (Nsf Xylem Root w... 127 5e-047
gb|CF399403.1|CF399403 RTDS3_28_D02.g1_A022 Drought-stresse... 117 8e-045
gb|CO364965.1|CO364965 RTK1_22_G09.g1_A029 Roots minus pota... 115 3e-041
gb|DR060889.1|DR060889 RTNIT1_30_D12.g1_A029 Roots minus ni... 113 3e-041
gb|CF665739.1|CF665739 RTCNT1_18_D05.b1_A029 Root control P... 118 4e-041
gb|DR090702.1|DR090702 RTAL1_16_G11.g1_A029 Roots plus adde... 115 1e-040
gb|DR079072.1|DR079072 RTFEPL1_8_G11.g1_A029 Roots plus add... 115 7e-040
gb|DR012819.1|DR012819 HEAT1_15_E08.b1_A029 Root at 37 C fo... 104 6e-039
gb|U90345.1|PRU90345 Pinus radiata putative MADS box transc... 104 8e-039
gb|AF006210.1|AF006210 Pinus resinosa MADS box transcriptio... 114 1e-038
gb|AF023615.1|AF023615 Pinus radiata MADS box protein mRNA,... 114 3e-038
gb|CO170901.1|CO170901 NDL1_17_E10.g1_A029 Needles control ... 102 3e-038
gb|DR109660.1|DR109660 RTS1_3_G12.g1_A029 Roots minus sulfu... 112 5e-038
gb|CX645252.1|CX645252 COLD1_1_H11.b1_A029 Root cold Pinus ... 112 5e-038
gb|BQ654531.1|BQ654531 NXRV081_H04_F NXRV (Nsf Xylem Root w... 127 8e-038
gb|CX650850.1|CX650850 COLD1_48_B09.g1_A029 Root cold Pinus... 102 1e-037
gb|DR069454.1|DR069454 RTDK1_7_H04.b1_A029 Roots, dark Pinu... 99 3e-037
gb|DR167232.1|DR167232 RTPHOS1_17_B11.g1_A029 Roots minus p... 117 5e-037
gb|BX252374.1|BX252374 BX252374 Pinus pinaster differenciat... 112 5e-037
gb|DR058437.1|DR058437 RTNIT1_11_F11.g1_A029 Roots minus ni... 107 9e-037
gb|CO364847.1|CO364847 RTK1_22_D10.b1_A029 Roots minus pota... 107 2e-036
gb|CV031753.1|CV031753 RTNACL1_3_B05.g1_A029 Roots plus add... 107 2e-036
gb|CO201105.1|CO201105 RTCNT2_3_D12.g1_A029 Root control 2 ... 107 2e-036
gb|CF670172.1|CF670172 RTCNT1_48_B11.g1_A029 Root control P... 107 4e-036
gb|CF475501.1|CF475501 RTWW2_12_G12.g1_A021 Well-watered lo... 119 4e-036
gb|DR384822.1|DR384822 RTHG1_4_G03.g1_A029 Roots plus added... 119 4e-036
gb|CO163263.1|CO163263 FLD1_40_B04.g1_A029 Root flooded Pin... 115 6e-036
gb|CO363306.1|CO363306 RTK1_8_H10.g1_A029 Roots minus potas... 95 8e-036
gb|U90344.1|PRU90344 Pinus radiata putative MADS box transc... 117 1e-035
gb|CV035951.1|CV035951 RTNACL1_43_D02.g1_A029 Roots plus ad... 148 7e-035
gb|CF476348.1|CF476348 RTWW2_22_G12.g1_A021 Well-watered lo... 104 3e-034
gb|DR090622.1|DR090622 RTAL1_16_G11.b1_A029 Roots plus adde... 92 4e-034
gb|CO175129.1|CO175129 NDL1_48_D06.g1_A029 Needles control ... 92 4e-034
gb|DR178004.1|DR178004 RTMNUT1_8_E05.g1_A029 Roots minus mi... 107 4e-034
gb|CF392697.1|CF392697 RTDR3_5_H09.g1_A022 Loblolly pine ro... 122 9e-034
gb|CF477439.1|CF477439 RTWW3_7_F06.g1_A022 Well-watered lob... 122 6e-033
gb|BX249866.1|BX249866 BX249866 Pinus pinaster differenciat... 141 1e-032
gb|CX713803.1|CX713803 RTPQ1_13_F12.b1_A032 Roots treated w... 120 2e-032
gb|CF394057.1|CF394057 RTDS2_3_D04.b1_A021 Drought-stressed... 107 7e-032
gb|U90346.1|PRU90346 Pinus radiata putative MADS box transc... 116 1e-031
gb|CX650456.1|CX650456 COLD1_45_F12.g1_A029 Root cold Pinus... 117 2e-031
gb|CF401468.1|CF401468 RTWW1_12_E09.g1_A015 Well-watered lo... 116 3e-031
gb|CX713558.1|CX713558 RTPQ1_10_E02.g1_A032 Roots treated w... 115 3e-031
gb|CO365540.1|CO365540 RTK1_17_D10.g1_A029 Roots minus pota... 117 4e-031
gb|CO161575.1|CO161575 FLD1_29_F09.g1_A029 Root flooded Pin... 120 7e-031
gb|CO161503.1|CO161503 FLD1_29_F09.b1_A029 Root flooded Pin... 120 7e-031
gb|CF389963.1|CF389963 RTDR2_11_B08.g1_A021 Loblolly pine r... 120 7e-031
gb|BG040082.1|BG040082 NXSI_106_C09_F NXSI (Nsf Xylem Side ... 134 1e-030
gb|BF778396.1|BF778396 NXSI_082_G07_F NXSI (Nsf Xylem Side ... 133 4e-030
gb|DR112977.1|DR112977 RTS1_32_C04.b1_A029 Roots minus sulf... 117 4e-030
gb|CF389852.1|CF389852 RTDR2_11_B08.b1_A021 Loblolly pine r... 120 6e-030
gb|CF388137.1|CF388137 RTDR2_1_D05.b1_A021 Loblolly pine ro... 120 6e-030
gb|CX713480.1|CX713480 RTPQ1_9_E04.g1_A032 Roots treated wi... 115 6e-030
gb|CO197079.1|CO197079 GEO1_3_F06.g1_A029 Root gravitropism... 105 4e-029
gb|CF668263.1|CF668263 RTCNT1_35_A03.g1_A029 Root control P... 107 1e-028
gb|BG318835.1|BG318835 NXPV_020_D12_F NXPV (Nsf Xylem Plani... 115 9e-028
gb|BQ696809.1|BQ696809 NXPV_045_E02_F NXPV (Nsf Xylem Plani... 115 8e-027
gb|AL749789.1|AL749789 AL749789 AS Pinus pinaster cDNA clon... 121 1e-026
gb|DR058453.1|DR058453 RTNIT1_11_H04.g1_A029 Roots minus ni... 90 2e-026
gb|DR013883.1|DR013883 HEAT1_22_D05.b1_A029 Root at 37 C fo... 120 3e-026
gb|BG318417.1|BG318417 NXPV_013_D07_F NXPV (Nsf Xylem Plani... 119 5e-026
gb|BG625803.1|BG625803 NXPV_066_C06_F NXPV (Nsf Xylem Plani... 119 5e-026
gb|AW290406.1|AW290406 NXNV019H03F Nsf Xylem Normal wood Ve... 115 5e-026
gb|CD027064.1|CD027064 NXNV019H03 Nsf Xylem Normal wood Ver... 115 5e-026
gb|CX645838.1|CX645838 COLD1_5_D01.g1_A029 Root cold Pinus ... 116 3e-025
gb|DR177222.1|DR177222 RTMNUT1_3_H10.g1_A029 Roots minus mi... 116 3e-025
gb|DR016296.1|DR016296 STRS1_9_F06.b1_A034 Shoot tip pitch ... 84 9e-025
gb|AL749853.1|AL749853 AL749853 AS Pinus pinaster cDNA clon... 114 1e-024
gb|CF394132.1|CF394132 RTDS2_3_D04.g1_A021 Drought-stressed... 68 1e-024
gb|CF388230.1|CF388230 RTDR2_1_D05.g1_A021 Loblolly pine ro... 88 1e-024
gb|AW985380.1|AW985380 NXNV_134_G01_F Nsf Xylem Normal wood... 114 2e-024
gb|BE644116.1|BE644116 NXCI_054_F11_F NXCI (Nsf Xylem Compr... 114 2e-024
gb|CF476374.1|CF476374 RTWW2_22_E12.g1_A021 Well-watered lo... 107 2e-024
gb|AW010611.1|AW010611 ST08G08 Pine TriplEx shoot tip libra... 113 2e-024
gb|AW010840.1|AW010840 ST14G02 Pine TriplEx shoot tip libra... 113 2e-024
gb|DR177921.1|DR177921 RTMNUT1_8_E05.b1_A029 Roots minus mi... 67 2e-024
gb|CO169756.1|CO169756 NDL1_9_A05.g1_A029 Needles control P... 113 3e-024
gb|DR168055.1|DR168055 RTPHOS1_22_H02.g1_A029 Roots minus p... 113 3e-024
gb|DR016383.1|DR016383 STRS1_9_F06.g1_A034 Shoot tip pitch ... 83 3e-024
gb|AW587800.1|AW587800 ST67B08 Pine TriplEx shoot tip libra... 112 4e-024
gb|AL750172.1|AL750172 AL750172 AS Pinus pinaster cDNA clon... 112 4e-024
gb|CX646655.1|CX646655 COLD1_10_E03.g1_A029 Root cold Pinus... 90 5e-024
gb|CF386447.1|CF386447 RTDR1_14_B10.g1_A015 Loblolly pine r... 112 6e-024
gb|CO361066.1|CO361066 NDL2_2_B04.g1_A029 Needles control 2... 112 6e-024
gb|DR051726.1|DR051726 RTBOR1_32_A11.b1_A029 Roots plus add... 112 6e-024
gb|DR051801.1|DR051801 RTBOR1_32_A11.g1_A029 Roots plus add... 112 6e-024
dbj|DD014347.1| Compositions and Methods for the Modificati... 112 6e-024
gb|AA739846.1|AA739846 611 PtIFG2 Pinus taeda cDNA clone 89... 111 8e-024
gb|AI725123.1|AI725123 1022 PtIFG2 Pinus taeda cDNA clone 8... 111 8e-024
gb|AW225878.1|AW225878 ST72G07 Pine TriplEx shoot tip libra... 111 8e-024
gb|BF186169.1|BF186169 NXCI_133_G11_F NXCI (Nsf Xylem Compr... 111 8e-024
gb|BF609658.1|BF609658 NXSI_047_G05_F NXSI (Nsf Xylem Side ... 111 8e-024
gb|BG039483.1|BG039483 NXSI_099_F04_F NXSI (Nsf Xylem Side ... 111 8e-024
gb|BG318888.1|BG318888 NXPV_021_A10_F NXPV (Nsf Xylem Plani... 111 8e-024
gb|BQ695742.1|BQ695742 NXPV_032_B10_F NXPV (Nsf Xylem Plani... 111 8e-024
gb|CD028456.1|CD028456 NXSI_119_C03_F NXSI (Nsf Xylem Side ... 111 8e-024
gb|CF389480.1|CF389480 RTDR2_7_A07.g1_A021 Loblolly pine ro... 111 8e-024
gb|CF671036.1|CF671036 RTCNT1_54_F06.b1_A029 Root control P... 111 8e-024
gb|CF671146.1|CF671146 RTCNT1_55_C04.b1_A029 Root control P... 111 8e-024
gb|CV034382.1|CV034382 RTNACL1_40_C07.g1_A029 Roots plus ad... 111 8e-024
gb|CX650315.1|CX650315 COLD1_44_H01.g1_A029 Root cold Pinus... 111 8e-024
gb|DR112834.1|DR112834 RTS1_31_A11.b1_A029 Roots minus sulf... 111 8e-024
gb|DR742675.1|DR742675 RTCU1_5_F06.g2_A029 Roots plus added... 111 8e-024
gb|DR014329.1|DR014329 HEAT1_24_G07.g1_A029 Root at 37 C fo... 111 1e-023
gb|AA556486.1|AA556486 341 Loblolly pine C Pinus taeda cDNA... 110 2e-023
gb|BF777592.1|BF777592 NXSI_070_C11_F NXSI (Nsf Xylem Side ... 110 2e-023
gb|DR016118.1|DR016118 STRS1_7_G02.g1_A034 Shoot tip pitch ... 77 2e-023
gb|AW981881.1|AW981881 PC19G08 Pine TriplEx pollen cone lib... 110 3e-023
gb|DR169156.1|DR169156 RTPHOS1_30_A07.g1_A029 Roots minus p... 110 3e-023
gb|U90348.1|PRU90348 Pinus radiata putative MADS box transc... 110 3e-023
gb|BF777427.1|BF777427 NXSI_071_E03_F NXSI (Nsf Xylem Side ... 109 4e-023
gb|CO157702.1|CO157702 FLD1_1_B06.g1_A029 Root flooded Pinu... 109 4e-023
gb|CO367965.1|CO367965 RTK1_37_F12.g1_A029 Roots minus pota... 109 4e-023
gb|DR072089.1|DR072089 RTDK1_24_B10.b1_A029 Roots, dark Pin... 109 4e-023
gb|DR072321.1|DR072321 RTDK1_25_B07.g1_A029 Roots, dark Pin... 109 4e-023
gb|DR081124.1|DR081124 RTFEPL1_27_C11.g1_A029 Roots plus ad... 109 4e-023
gb|DR178023.1|DR178023 RTMNUT1_8_F12.g1_A029 Roots minus mi... 109 4e-023
gb|AF120097.1|AF120097 Pinus radiata DEF/GLO-like protein (... 106 5e-023
gb|BE187247.1|BE187247 NXNV_76_C05_F Nsf Xylem Normal wood ... 108 7e-023
gb|BF609617.1|BF609617 NXSI_047_C08_F NXSI (Nsf Xylem Side ... 108 7e-023
gb|DR098149.1|DR098149 STRR1_39_A06.g1_A033 Stem Response R... 95 8e-023
gb|CX715901.1|CX715901 RTPQ1_37_G08.g1_A032 Roots treated w... 95 8e-023
gb|DR742217.1|DR742217 RTCU1_2_C05.g1_A029 Roots plus added... 95 1e-022
gb|DR069761.1|DR069761 RTDK1_9_F10.b1_A029 Roots, dark Pinu... 95 1e-022
gb|CV033324.1|CV033324 RTNACL1_33_G03.g1_A029 Roots plus ad... 101 2e-022
gb|CF390951.1|CF390951 RTDR3_2_E09.g1_A022 Loblolly pine ro... 107 2e-022
gb|CO200495.1|CO200495 GEO2_7_G03.g1_A032 Root gravitropism... 107 2e-022
gb|CO200411.1|CO200411 GEO2_7_G03.b1_A032 Root gravitropism... 107 2e-022
gb|BM134188.1|BM134188 NXLV_017_H01_F NXLV (Nsf Xylem Late ... 106 4e-022
gb|CX649779.1|CX649779 COLD1_41_A09.g1_A029 Root cold Pinus... 106 4e-022
gb|U90349.1|PRU90349 Pinus radiata putative MADS box transc... 104 6e-022
gb|U90347.1|PRU90347 Pinus radiata putative MADS box transc... 105 7e-022
gb|AL749854.1|AL749854 AL749854 AS Pinus pinaster cDNA clon... 104 1e-021
gb|BQ702011.1|BQ702011 NXSI_123_D02_F NXSI (Nsf Xylem Side ... 104 1e-021
gb|CV034312.1|CV034312 RTNACL1_40_C07.b1_A029 Roots plus ad... 104 1e-021
gb|DR049854.1|DR049854 RTBOR1_19_B11.g1_A029 Roots plus add... 104 1e-021
gb|DR091107.1|DR091107 RTAL1_19_A05.g1_A029 Roots plus adde... 104 1e-021
gb|AW754659.1|AW754659 PC04G10 Pine TriplEx pollen cone lib... 103 2e-021
gb|BE451798.1|BE451798 NXCI_002_D03_F NXCI (Nsf Xylem Compr... 103 2e-021
gb|BF220652.1|BF220652 NXCI_151_A10_F NXCI (Nsf Xylem Compr... 103 2e-021
gb|BF516913.1|BF516913 NXSI_005_F09_F NXSI (Nsf Xylem Side ... 103 2e-021
gb|BF517018.1|BF517018 NXSI_008_C03_F NXSI (Nsf Xylem Side ... 103 2e-021
gb|CO201026.1|CO201026 RTCNT2_3_D12.b1_A029 Root control 2 ... 67 6e-021
gb|CO165497.1|CO165497 FLD1_54_H10.g1_A029 Root flooded Pin... 102 6e-021
gb|CX649703.1|CX649703 COLD1_41_A09.b1_A029 Root cold Pinus... 102 6e-021
gb|DR016089.1|DR016089 STRS1_7_C12.g1_A034 Shoot tip pitch ... 102 6e-021
gb|BQ701239.1|BQ701239 NXSI_061_B12_F NXSI (Nsf Xylem Side ... 101 8e-021
>gb|U76726.1|PRU76726 Pinus radiata MADS-box protein (PrMADS3) mRNA, complete cds
Length = 1130
Score = 124 bits (266), Expect(2) = 3e-056
Identities = 51/61 (83%), Positives = 59/61 (96%)
Frame = -1 / +1
Query: 1203 MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYASD 1024
MGRG+VQL+RIENKINRQVTFSKRRNGLLKKA+E+SVLCDAEVA+I+FS +GKLYE+AS
Sbjct: 1 MGRGRVQLRRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFASS 180
Query: 1023 S 1021
S
Sbjct: 181 S 183
Score = 115 bits (245), Expect(2) = 3e-056
Identities = 52/118 (44%), Positives = 70/118 (59%)
Frame = -1 / +1
Query: 1029 SDSRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQRCHKHLMGEDLE 850
+ S M+K LERYE+ SYA + NW E KLK K+E +QR +HL+GEDL
Sbjct: 172 ASSSMNKTLERYEKCSYAMQDTTGVSDREAQNWHQEVTKLKGKVELLQRSQRHLLGEDLG 351
Query: 849 SLNPKXXXXXXXXXXXXLKHIRSRKSHLMAESISELQKKERSLQEENKALQKELSERQ 676
LN K L H+RSRK+ +M + I EL+++ER L E NK+LQK+LSE +
Sbjct: 352 PLNVKELQQLERQLEVALTHLRSRKTQVMLDQIEELRQRERLLHEVNKSLQKKLSETE 525
Score = 88.6 bits (187), Expect(3) = 6e-026
Identities = 41/57 (71%), Positives = 44/57 (77%)
Frame = +2 / -1
Query: 1031 AYS*SLPLGEKTMTATSASQRTEISCAFFSSPFRRLEKVTCRFILFSIRFSCTLPRP 1201
A S*S PL EK ++ATSAS T+ S AFFSSPFRR E VTCRFILFSIR S T PRP
Sbjct: 173 ANS*SFPLVEKIISATSASHSTDSSYAFFSSPFRRFENVTCRFILFSIRLS*TRPRP 3
Score = 43.2 bits (88), Expect(3) = 6e-026
Identities = 23/61 (37%), Positives = 31/61 (50%)
Frame = +2 / -1
Query: 842 FKDSRSSPIRCLWHLCMVSILAFSFLYSWHQFPSLSDSAEIRAFSA*EYRS*RSRILSMR 1021
F RSSP +CL C S L F+F+ SW QF + + + A E+ S S +L M
Sbjct: 359 FNGPRSSPNKCLCDRCRSSTLPFNFVTSWCQFCASRSETPVVSCIAYEHFSYLSNVLFML 180
Query: 1022 E 1024
E
Sbjct: 179 E 177
Score = 24.4 bits (47), Expect(3) = 6e-026
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +2 / -1
Query: 680 LSESSFCRAXXXXXXXXXXXXXXEIDSAIRWLFLDL 787
+SES FCR I S+I +FLDL
Sbjct: 521 VSESFFCRDLFTSCSNRSLWRSSSIWSSITCVFLDL 414
>gb|U42400.1|PRU42400 Pinus radiata putative MADS-box family transcription factor (PrMADS2)
mRNA, complete cds
Length = 1064
Score = 129 bits (277), Expect(2) = 1e-050
Identities = 51/68 (75%), Positives = 64/68 (94%)
Frame = -1 / +2
Query: 1230 GSRDRRQAKMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPK 1051
G ++R++ +MGRG+V+LKRIENKINRQVTFSKRRNGLLKKA+E+SVLCDAEVA+I+FS +
Sbjct: 68 GKKERKKERMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSR 247
Query: 1050 GKLYEYAS 1027
GKLYE+ S
Sbjct: 248 GKLYEFGS 271
Score = 91.3 bits (193), Expect(2) = 1e-050
Identities = 40/87 (45%), Positives = 56/87 (64%)
Frame = -1 / +2
Query: 936 NWCHEYRKLKAKIETIQRCHKHLMGEDLESLNPKXXXXXXXXXXXXLKHIRSRKSHLMAE 757
NW E KLKA++E +QR +HL+GEDL L+ K L H+RSRK+ +M E
Sbjct: 356 NWHQEVGKLKARVELLQRSQRHLLGEDLGPLSIKELQQLERQLEVALTHVRSRKTQVMLE 535
Query: 756 SISELQKKERSLQEENKALQKELSERQ 676
+ EL++KER LQE NK+L+K+L E +
Sbjct: 536 MMDELRRKERILQEVNKSLRKKLQEAE 616
>gb|AW010398.1|AW010398 ST06D02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST06D02, mRNA sequence
Length = 647
Score = 127 bits (271), Expect(2) = 7e-050
Identities = 52/68 (76%), Positives = 62/68 (91%)
Frame = -1 / +3
Query: 1224 RDRRQAKMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGK 1045
+ +R MGRG+VQL+RIENKINRQVTFSKRRNGLLKKA+E+SVLCDAEVA+I+FS +GK
Sbjct: 3 KKQRDLAMGRGRVQLRRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGK 182
Query: 1044 LYEYASDS 1021
LYE+AS S
Sbjct: 183 LYEFASSS 206
Score = 92.3 bits (195), Expect(2) = 5e-025
Identities = 43/58 (74%), Positives = 46/58 (79%)
Frame = +2 / -2
Query: 1031 AYS*SLPLGEKTMTATSASQRTEISCAFFSSPFRRLEKVTCRFILFSIRFSCTLPRPI 1204
A S*S PL EK ++ATSAS T+ S AFFSSPFRRLE VTCRFILFSIR S T PRPI
Sbjct: 196 ANS*SFPLVEKIISATSASHSTDSSYAFFSSPFRRLENVTCRFILFSIRLS*TRPRPI 23
Score = 91.8 bits (194), Expect(2) = 7e-050
Identities = 42/103 (40%), Positives = 56/103 (54%)
Frame = -1 / +3
Query: 1029 SDSRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQRCHKHLMGEDLE 850
+ S M+K LERYE+ SYA + NW E KLK K+E +QR +HL+GEDL
Sbjct: 195 ASSSMNKTLERYEKCSYAMQDTTGVSDREAQNWHQEVTKLKGKVELLQRSQRHLLGEDLG 374
Query: 849 SLNPKXXXXXXXXXXXXLKHIRSRKSHLMAESISELQKKERSL 721
LN K L H++SRK+ +M + I EL + ER L
Sbjct: 375 PLNVKELQRLERQLEGALTHLKSRKTXVMLDXIEELXQXERXL 503
Score = 43.2 bits (88), Expect(2) = 5e-025
Identities = 23/61 (37%), Positives = 31/61 (50%)
Frame = +2 / -2
Query: 842 FKDSRSSPIRCLWHLCMVSILAFSFLYSWHQFPSLSDSAEIRAFSA*EYRS*RSRILSMR 1021
F RSSP +CL C S L F+F+ SW QF + + + A E+ S S +L M
Sbjct: 382 FNGPRSSPNKCLCDRCRSSTLPFNFVTSWCQFCASRSETPVVSCIAYEHFSYLSNVLFML 203
Query: 1022 E 1024
E
Sbjct: 202 E 200
>emb|Y09611.1|PRMADS1 P.resinosa mRNA for MADS-box protein
Length = 1073
Score = 124 bits (265), Expect(2) = 6e-049
Identities = 49/64 (76%), Positives = 61/64 (95%)
Frame = -1 / +1
Query: 1218 RRQAKMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLY 1039
+++ +MGRG+V+LKRIENKINRQVTFSKRRNGLLKKA+E+SVLCDAEVA+I+FS +GKLY
Sbjct: 61 KKEERMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLY 240
Query: 1038 EYAS 1027
E+ S
Sbjct: 241 EFGS 252
Score = 91.3 bits (193), Expect(2) = 6e-049
Identities = 40/87 (45%), Positives = 56/87 (64%)
Frame = -1 / +1
Query: 936 NWCHEYRKLKAKIETIQRCHKHLMGEDLESLNPKXXXXXXXXXXXXLKHIRSRKSHLMAE 757
NW E KLKA++E +QR +HL+GEDL L+ K L H+RSRK+ +M E
Sbjct: 337 NWHQEVGKLKARVELLQRSQRHLLGEDLGPLSIKELQQLERQLEVALTHVRSRKTQVMLE 516
Query: 756 SISELQKKERSLQEENKALQKELSERQ 676
+ EL++KER LQE NK+L+K+L E +
Sbjct: 517 MMDELRRKERILQEVNKSLRKKLQEAE 597
>gb|U42399.1|PRU42399 Pinus radiata putative MADS-box family transcription factor (PrMADS1)
mRNA, complete cds
Length = 1007
Score = 140 bits (300), Expect(2) = 8e-048
Identities = 57/80 (71%), Positives = 70/80 (87%)
Frame = -1 / +3
Query: 1218 RRQAKMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLY 1039
+R MGRGKV+LKRIENKINRQVTF+KRRNGLLKKA+E+SVLCDAEVA+I+FS +GKLY
Sbjct: 6 KRDRDMGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLY 185
Query: 1038 EYASDSRMDKILERYERYSY 979
E+ S S M K +E+Y++ SY
Sbjct: 186 EFCSSSSMMKTIEKYQKCSY 245
Score = 71.6 bits (150), Expect(2) = 8e-048
Identities = 33/85 (38%), Positives = 50/85 (58%)
Frame = -1 / +3
Query: 936 NWCHEYRKLKAKIETIQRCHKHLMGEDLESLNPKXXXXXXXXXXXXLKHIRSRKSHLMAE 757
N +Y +LKA++E +QR ++L+GE+L LN K LK IRS K+ M +
Sbjct: 285 NSYQDYLELKARVEVLQRSQRNLLGEELGPLNSKELEQLEHQLENSLKQIRSAKTQFMFD 464
Query: 756 SISELQKKERSLQEENKALQKELSE 682
++ LQ KE+ L E N+ L+K+L E
Sbjct: 465 QLAHLQHKEQMLVEANRELRKKLEE 539
>gb|BQ290846.1|BQ290846 NXRV050_D03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV050_D03 5' similar to Arabidopsis thaliana
sequence At5g15800 transcription factor (AGL2) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 546
Score = 127 bits (271), Expect(2) = 5e-047
Identities = 52/68 (76%), Positives = 62/68 (91%)
Frame = -1 / +1
Query: 1224 RDRRQAKMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGK 1045
+ +R MGRG+VQL+RIENKINRQVTFSKRRNGLLKKA+E+SVLCDAEVA+I+FS +GK
Sbjct: 64 KKQRDLAMGRGRVQLRRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGK 243
Query: 1044 LYEYASDS 1021
LYE+AS S
Sbjct: 244 LYEFASSS 267
Score = 92.3 bits (195), Expect(2) = 5e-025
Identities = 43/58 (74%), Positives = 46/58 (79%)
Frame = +2 / -2
Query: 1031 AYS*SLPLGEKTMTATSASQRTEISCAFFSSPFRRLEKVTCRFILFSIRFSCTLPRPI 1204
A S*S PL EK ++ATSAS T+ S AFFSSPFRRLE VTCRFILFSIR S T PRPI
Sbjct: 257 ANS*SFPLVEKIISATSASHSTDSSYAFFSSPFRRLENVTCRFILFSIRLS*TRPRPI 84
Score = 82.2 bits (173), Expect(2) = 5e-047
Identities = 38/95 (40%), Positives = 49/95 (51%)
Frame = -1 / +1
Query: 1029 SDSRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQRCHKHLMGEDLE 850
+ S M+K LERYE+ SYA + NW E KLK K+E +QR +HL+GEDL
Sbjct: 256 ASSSMNKTLERYEKCSYAMQDTTGVSDREAQNWHQEVTKLKGKVELLQRSQRHLLGEDLG 435
Query: 849 SLNPKXXXXXXXXXXXXLKHIRSRKSHLMAESISE 745
LN K L H+RSRK+ M + E
Sbjct: 436 PLNVKELQQLERQLEVALTHLRSRKTXXMLDXXEE 540
Score = 43.2 bits (88), Expect(2) = 5e-025
Identities = 23/61 (37%), Positives = 31/61 (50%)
Frame = +2 / -2
Query: 842 FKDSRSSPIRCLWHLCMVSILAFSFLYSWHQFPSLSDSAEIRAFSA*EYRS*RSRILSMR 1021
F RSSP +CL C S L F+F+ SW QF + + + A E+ S S +L M
Sbjct: 443 FNGPRSSPNKCLCDRCRSSTLPFNFVTSWCQFCASRSETPVVSCIAYEHFSYLSNVLFML 264
Query: 1022 E 1024
E
Sbjct: 263 E 261
>gb|CF399403.1|CF399403 RTDS3_28_D02.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_28_D02_A022 5', mRNA sequence
Length = 711
Score = 117 bits (251), Expect(2) = 8e-045
Identities = 48/62 (77%), Positives = 58/62 (93%)
Frame = -1 / +2
Query: 1206 KMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYAS 1027
+MGRG+VQL++IENKINRQVTFSKRRNGL KKA E+S+LCDAEVA+IVFS +GKLY++AS
Sbjct: 38 EMGRGRVQLRKIENKINRQVTFSKRRNGLKKKASELSILCDAEVALIVFSNRGKLYDFAS 217
Query: 1026 DS 1021
S
Sbjct: 218 SS 223
Score = 84.0 bits (177), Expect(2) = 8e-045
Identities = 35/83 (42%), Positives = 56/83 (67%)
Frame = -1 / +2
Query: 924 EYRKLKAKIETIQRCHKHLMGEDLESLNPKXXXXXXXXXXXXLKHIRSRKSHLMAESISE 745
E+ +LK K++T+QRC +HL+GEDL+ L + L + S+K+ LM++ I +
Sbjct: 305 EFTQLKEKVKTLQRCSRHLLGEDLDRLTIRELQQLEQQLDGGLHQVISKKNQLMSDMIED 484
Query: 744 LQKKERSLQEENKALQKELSERQ 676
LQ+KE+ L+E NK+LQK+LSE +
Sbjct: 485 LQRKEQLLEETNKSLQKKLSEME 553
>gb|CO364965.1|CO364965 RTK1_22_G09.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_22_G09_A029 5', mRNA sequence
Length = 833
Score = 115 bits (246), Expect(2) = 3e-041
Identities = 48/68 (70%), Positives = 57/68 (83%)
Frame = -1 / +3
Query: 1224 RDRRQAKMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGK 1045
R + +M RGK Q+KRIEN +RQVTFSKRRNGLLKKA+E+SVLCDAEV +IVFSP+GK
Sbjct: 156 RVEERRRMVRGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGK 335
Query: 1044 LYEYASDS 1021
LYE+ S S
Sbjct: 336 LYEFGSSS 359
Score = 74.4 bits (156), Expect(2) = 3e-041
Identities = 36/114 (31%), Positives = 59/114 (51%)
Frame = -1 / +3
Query: 1023 SRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQRCHKHLMGEDLESL 844
S M KI+ERY++YS + E+ + E ++ I ++ + ++GE L S
Sbjct: 354 SSMQKIVERYQKYSDENSMNKTVREENTQSLKREIANMEETIRLLESTQRKMLGEGLASC 533
Query: 843 NPKXXXXXXXXXXXXLKHIRSRKSHLMAESISELQKKERSLQEENKALQKELSE 682
+ K L HIRSR++ ++ I +L+KKER L EEN L+K+ +E
Sbjct: 534 SVKELNNLESQAERGLSHIRSRRTEILKNQIDQLKKKERVLSEENAFLRKKCAE 695
>gb|DR060889.1|DR060889 RTNIT1_30_D12.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_30_D12_A029 5', mRNA sequence
Length = 796
Score = 113 bits (241), Expect(2) = 3e-041
Identities = 46/59 (77%), Positives = 55/59 (93%)
Frame = -1 / +3
Query: 1197 RGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYASDS 1021
RGK Q+KRIEN +RQVTFSKRRNGLLKKA+E+SVLCDAEVA++VFSP+GKLYE+A+ S
Sbjct: 54 RGKTQMKRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVALMVFSPRGKLYEFANPS 230
Score = 76.7 bits (161), Expect(2) = 3e-041
Identities = 37/110 (33%), Positives = 58/110 (52%)
Frame = -1 / +3
Query: 1017 MDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQRCHKHLMGEDLESLNP 838
M K+LERYE+ S K A+ E E ++ +IE ++R + ++GE+L S
Sbjct: 231 MQKMLERYEKCSEGSKTTSIAKEEDPKALKREIANMEERIEILERTQRKMLGEELASCAL 410
Query: 837 KXXXXXXXXXXXXLKHIRSRKSHLMAESISELQKKERSLQEENKALQKEL 688
K L++IR+RKS ++ I +LQ+KER EEN L+K +
Sbjct: 411 KDLNQLESQVERGLRNIRARKSEILVTQIEQLQRKERMFSEENNFLRKRI 560
>gb|CF665739.1|CF665739 RTCNT1_18_D05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_18_D05_A029 3', mRNA sequence
Length = 665
Score = 118 bits (253), Expect(2) = 4e-041
Identities = 49/62 (79%), Positives = 58/62 (93%)
Frame = -1 / -1
Query: 1206 KMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYAS 1027
+MGRG+VQL++IENKINRQVTFSKRRNGL KKA E+S+LCDAEVA+IVFS +GKLYE+AS
Sbjct: 494 EMGRGRVQLRKIENKINRQVTFSKRRNGLKKKAAELSILCDAEVALIVFSNRGKLYEFAS 315
Query: 1026 DS 1021
S
Sbjct: 314 SS 309
Score = 70.7 bits (148), Expect(2) = 4e-041
Identities = 31/75 (41%), Positives = 46/75 (61%)
Frame = -1 / -2
Query: 924 EYRKLKAKIETIQRCHKHLMGEDLESLNPKXXXXXXXXXXXXLKHIRSRKSHLMAESISE 745
E+ +LK K E++QRC++HL+GED++ L K L + S K+ M + I E
Sbjct: 226 EFTQLKEKFESLQRCNRHLLGEDVDGLTMKELQQLEQQLQGGLHQVISXKNQFMFDMIEE 47
Query: 744 LQKKERSLQEENKAL 700
LQKKE+ L+ ENK+L
Sbjct: 46 LQKKEQLLEGENKSL 2
>gb|DR090702.1|DR090702 RTAL1_16_G11.g1_A029 Roots plus added aluminum Pinus taeda cDNA clone
RTAL1_16_G11_A029 5', mRNA sequence
Length = 808
Score = 115 bits (246), Expect(2) = 1e-040
Identities = 48/68 (70%), Positives = 57/68 (83%)
Frame = -1 / +3
Query: 1224 RDRRQAKMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGK 1045
R + +M RGK Q+KRIEN +RQVTFSKRRNGLLKKA+E+SVLCDAEV +IVFSP+GK
Sbjct: 228 RVEERRRMVRGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGK 407
Query: 1044 LYEYASDS 1021
LYE+ S S
Sbjct: 408 LYEFGSSS 431
Score = 72.1 bits (151), Expect(2) = 1e-040
Identities = 35/112 (31%), Positives = 57/112 (50%)
Frame = -1 / +3
Query: 1023 SRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQRCHKHLMGEDLESL 844
S M KI+ERY++YS + E+ + E ++ I ++ + ++GE L S
Sbjct: 426 SSMQKIVERYQKYSDENSMNKTVREENTQSLKREIANMEETIRLLESTQRKMLGEGLASC 605
Query: 843 NPKXXXXXXXXXXXXLKHIRSRKSHLMAESISELQKKERSLQEENKALQKEL 688
+ K L HIRSR++ ++ I +L+KKER L EEN L+K +
Sbjct: 606 SVKELNNLESQAERGLSHIRSRRTEILKNQIDQLKKKERVLSEENAFLRKNV 761
>gb|DR079072.1|DR079072 RTFEPL1_8_G11.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_8_G11_A029 5', mRNA sequence
Length = 829
Score = 115 bits (246), Expect(2) = 7e-040
Identities = 48/68 (70%), Positives = 57/68 (83%)
Frame = -1 / +2
Query: 1224 RDRRQAKMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGK 1045
R + +M RGK Q+KRIEN +RQVTFSKRRNGLLKKA+E+SVLCDAEV +IVFSP+GK
Sbjct: 125 RVEERRRMVRGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGK 304
Query: 1044 LYEYASDS 1021
LYE+ S S
Sbjct: 305 LYEFGSSS 328
Score = 69.8 bits (146), Expect(2) = 7e-040
Identities = 35/114 (30%), Positives = 58/114 (50%)
Frame = -1 / +2
Query: 1023 SRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQRCHKHLMGEDLESL 844
S M KI+ERY++YS + E+ ++ ++ I ++ + ++GE L S
Sbjct: 323 SSMQKIVERYQKYSDENSMNKTVREENTQSFFFLIANMEETILFLESTQRKMLGEGLASC 502
Query: 843 NPKXXXXXXXXXXXXLKHIRSRKSHLMAESISELQKKERSLQEENKALQKELSE 682
+ K L HIRSR++ + I +L+KKER L EEN L+K+ +E
Sbjct: 503 SVKELNNLESQAERGLSHIRSRRTEIFKNQIDQLKKKERMLSEENAFLRKKCAE 664
>gb|DR012819.1|DR012819 HEAT1_15_E08.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_15_E08_A029 3', mRNA sequence
Length = 734
Score = 104 bits (222), Expect(2) = 6e-039
Identities = 39/68 (57%), Positives = 58/68 (85%)
Frame = -1 / -1
Query: 1230 GSRDRRQAKMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPK 1051
G +++ +MGRG+ +L++IE+ +RQVTFSKRRNGLLKKA+E+SVLCD E+ +IV SP+
Sbjct: 722 GGNEKKGRRMGRGRTRLRKIESATSRQVTFSKRRNGLLKKAYELSVLCDVELGLIVLSPR 543
Query: 1050 GKLYEYAS 1027
GK++E++S
Sbjct: 542 GKVHEFSS 519
Score = 77.6 bits (163), Expect(2) = 6e-039
Identities = 38/114 (33%), Positives = 60/114 (52%)
Frame = -1 / -1
Query: 1029 SDSRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQRCHKHLMGEDLE 850
S + M K+LERYE+ S K A+ E E ++ +IE ++R + ++GE+L
Sbjct: 524 SSTCMQKMLERYEKCSEGSKTTSIAKEEDPKALKREIANMEERIEILERTQRKMLGEELA 345
Query: 849 SLNPKXXXXXXXXXXXXLKHIRSRKSHLMAESISELQKKERSLQEENKALQKEL 688
S K L++IR+RKS ++ I +LQ+KER EEN L+K +
Sbjct: 344 SCALKDLNQLESQVERGLRNIRARKSEILVTQIEQLQRKERMFSEENNFLRKRI 183
>gb|U90345.1|PRU90345 Pinus radiata putative MADS box transcription factor PrMADS4 mRNA,
complete cds
Length = 1051
Score = 104 bits (221), Expect(2) = 8e-039
Identities = 37/67 (55%), Positives = 60/67 (89%)
Frame = -1 / +3
Query: 1227 SRDRRQAKMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKG 1048
+ ++++ +MGRG+++L++IE+ +RQVTFSKR+NGLLKKA+E+SVLCD E+ +IV SP+G
Sbjct: 156 ANEKKERRMGRGRIRLRKIESATSRQVTFSKRKNGLLKKAYELSVLCDVELGLIVLSPRG 335
Query: 1047 KLYEYAS 1027
K++E++S
Sbjct: 336 KVHEFSS 356
Score = 77.6 bits (163), Expect(2) = 8e-039
Identities = 38/114 (33%), Positives = 60/114 (52%)
Frame = -1 / +3
Query: 1029 SDSRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQRCHKHLMGEDLE 850
S + M K+LERYE+ S K A+ E E ++ +IE ++R + ++GE+L
Sbjct: 351 SSTCMQKMLERYEKCSEGSKTTSIAKEEDPKALKREIANMEERIEILERTQRKMLGEELA 530
Query: 849 SLNPKXXXXXXXXXXXXLKHIRSRKSHLMAESISELQKKERSLQEENKALQKEL 688
S K L++IR+RKS ++ I +LQ+KER EEN L+K +
Sbjct: 531 SCALKDLNQLESQVERGLRNIRARKSEILVTQIEQLQRKERMFSEENNFLRKRI 692
>gb|AF006210.1|AF006210 Pinus resinosa MADS box transcription factor mRNA, complete cds
Length = 1726
Score = 114 bits (244), Expect(2) = 1e-038
Identities = 46/61 (75%), Positives = 56/61 (91%)
Frame = -1 / +1
Query: 1203 MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYASD 1024
MGRGK+++KRIEN NRQVTF KRRNGLLKKA+E+SVLCDAEVA+IVFS +G+LYE+A+
Sbjct: 475 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEFANH 654
Query: 1023 S 1021
S
Sbjct: 655 S 657
Score = 92.7 bits (196), Expect(2) = 4e-021
Identities = 41/58 (70%), Positives = 47/58 (81%)
Frame = +2 / -3
Query: 1031 AYS*SLPLGEKTMTATSASQRTEISCAFFSSPFRRLEKVTCRFILFSIRFSCTLPRPI 1204
A S*SLPL EKTM ATSASQRT+ S AFF+ PFRRL+KVTCRF++FSI F PRP+
Sbjct: 647 ANS*SLPLLEKTMRATSASQRTDNSYAFFNKPFRRLQKVTCRFVVFSILFISIFPRPM 474
Score = 66.6 bits (139), Expect(2) = 1e-038
Identities = 28/88 (31%), Positives = 51/88 (57%)
Frame = -1 / +1
Query: 933 WCHEYRKLKAKIETIQRCHKHLMGEDLESLNPKXXXXXXXXXXXXLKHIRSRKSHLMAES 754
W E KL+ +IE +Q ++HLMG+ L +LN K + +RS+K+ ++ E
Sbjct: 742 WQQEAGKLRQQIEILQNANRHLMGDGLTALNIKELKQLEVRLEKGISRVRSKKNEMLLEE 921
Query: 753 ISELQKKERSLQEENKALQKELSERQKA 670
I +Q++E L +EN+ L+ +++E Q +
Sbjct: 922 IDIMQRREHILIQENEILRSKIAECQNS 1005
Score = 29.5 bits (58), Expect(2) = 4e-021
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2 / -3
Query: 842 FKDSRSSPIRCLWHLCMVSILAFSFLYSWHQF 937
FK SPI+CL+ C +SI S S Q+
Sbjct: 833 FKAVSPSPIKCLFAFCKISICCLSLPASCCQY 738
>gb|AF023615.1|AF023615 Pinus radiata MADS box protein mRNA, complete cds
Length = 922
Score = 114 bits (244), Expect(2) = 3e-038
Identities = 46/61 (75%), Positives = 56/61 (91%)
Frame = -1 / +2
Query: 1203 MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYASD 1024
MGRGK+++KRIEN NRQVTF KRRNGLLKKA+E+SVLCDAEVA+IVFS +G+LYE+A+
Sbjct: 14 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEFANH 193
Query: 1023 S 1021
S
Sbjct: 194 S 196
Score = 92.7 bits (196), Expect(2) = 8e-021
Identities = 41/58 (70%), Positives = 47/58 (81%)
Frame = +2 / -2
Query: 1031 AYS*SLPLGEKTMTATSASQRTEISCAFFSSPFRRLEKVTCRFILFSIRFSCTLPRPI 1204
A S*SLPL EKTM ATSASQRT+ S AFF+ PFRRL+KVTCRF++FSI F PRP+
Sbjct: 186 ANS*SLPLLEKTMRATSASQRTDNSYAFFNKPFRRLQKVTCRFVVFSILFISIFPRPM 13
Score = 65.2 bits (136), Expect(2) = 3e-038
Identities = 27/88 (30%), Positives = 51/88 (57%)
Frame = -1 / +2
Query: 933 WCHEYRKLKAKIETIQRCHKHLMGEDLESLNPKXXXXXXXXXXXXLKHIRSRKSHLMAES 754
W E KL+ +I+ +Q ++HLMG+ L +LN K + +RS+K+ ++ E
Sbjct: 281 WQQEAGKLRQQIDILQNANRHLMGDGLTALNIKELKQLEVRLEKGISRVRSKKNEMLLEE 460
Query: 753 ISELQKKERSLQEENKALQKELSERQKA 670
I +Q++E L +EN+ L+ +++E Q +
Sbjct: 461 IDIMQRREHILIQENEILRSKIAECQNS 544
Score = 28.6 bits (56), Expect(2) = 8e-021
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2 / -2
Query: 842 FKDSRSSPIRCLWHLCMVSILAFSFLYSWHQF 937
FK SPI+CL+ C +SI S S Q+
Sbjct: 372 FKAVSPSPIKCLFAFCKMSICCLSLPASCCQY 277
>gb|CO170901.1|CO170901 NDL1_17_E10.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_17_E10_A029 5', mRNA sequence
Length = 699
Score = 102 bits (217), Expect(2) = 3e-038
Identities = 38/67 (56%), Positives = 58/67 (86%)
Frame = -1 / +3
Query: 1227 SRDRRQAKMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKG 1048
+ +++ +MGRG+ +L++IE+ +RQVTFSKRRNGLLKKA+E+SVLCD E+ +IV SP+G
Sbjct: 123 ANEKKGRRMGRGRTRLRKIESATSRQVTFSKRRNGLLKKAYELSVLCDVELGLIVLSPRG 302
Query: 1047 KLYEYAS 1027
K++E++S
Sbjct: 303 KVHEFSS 323
Score = 77.6 bits (163), Expect(2) = 3e-038
Identities = 38/114 (33%), Positives = 60/114 (52%)
Frame = -1 / +3
Query: 1029 SDSRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQRCHKHLMGEDLE 850
S + M K+LERYE+ S K A+ E E ++ +IE ++R + ++GE+L
Sbjct: 318 SSTCMQKMLERYEKCSEGSKTTSIAKEEDPKALKREIANMEERIEILERTQRKMLGEELA 497
Query: 849 SLNPKXXXXXXXXXXXXLKHIRSRKSHLMAESISELQKKERSLQEENKALQKEL 688
S K L++IR+RKS ++ I +LQ+KER EEN L+K +
Sbjct: 498 SCALKDLNQLESQVERGLRNIRARKSEILVTQIEQLQRKERMFSEENNFLRKRI 659
>gb|DR109660.1|DR109660 RTS1_3_G12.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_3_G12_A029 5', mRNA sequence
Length = 826
Score = 112 bits (239), Expect(2) = 5e-038
Identities = 44/63 (69%), Positives = 55/63 (87%)
Frame = -1 / +3
Query: 1206 KMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYAS 1027
KMGRGK+++K+IEN ++RQVTF KRR GL+KKAHE+SVLCDAEVA+IVFS +GKLYE
Sbjct: 183 KMGRGKIEIKKIENSVHRQVTFCKRRGGLMKKAHELSVLCDAEVALIVFSSRGKLYELGI 362
Query: 1026 DSR 1018
+R
Sbjct: 363 SNR 371
Score = 66.6 bits (139), Expect(2) = 5e-038
Identities = 34/112 (30%), Positives = 59/112 (52%)
Frame = -1 / +3
Query: 1017 MDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQRCHKHLMGEDLESLNP 838
M ILERY++ S K + + + S+ E LK +I+ ++ +++LMGE L S++
Sbjct: 387 MRSILERYQKCSQTAKHMNFSNNTSDEKMKQEINLLKQQIDQLKLTNRYLMGEGLGSVSF 566
Query: 837 KXXXXXXXXXXXXLKHIRSRKSHLMAESISELQKKERSLQEENKALQKELSE 682
+ + +R++K LM + I LQ KE +L+ N LQ++L E
Sbjct: 567 EELNQLESRLQRGINQVRAKKHELMLDEIRALQSKEHTLRINNMMLQEKLEE 722
>gb|CX645252.1|CX645252 COLD1_1_H11.b1_A029 Root cold Pinus taeda cDNA clone COLD1_1_H11_A029
3', mRNA sequence
Length = 793
Score = 112 bits (239), Expect(2) = 5e-038
Identities = 44/63 (69%), Positives = 55/63 (87%)
Frame = -1 / -3
Query: 1206 KMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYAS 1027
KMGRGK+++K+IEN ++RQVTF KRR GL+KKAHE+SVLCDAEVA+IVFS +GKLYE
Sbjct: 617 KMGRGKIEIKKIENSVHRQVTFCKRRGGLMKKAHELSVLCDAEVALIVFSSRGKLYELGI 438
Query: 1026 DSR 1018
+R
Sbjct: 437 SNR 429
Score = 66.6 bits (139), Expect(2) = 5e-038
Identities = 34/112 (30%), Positives = 58/112 (51%)
Frame = -1 / -3
Query: 1017 MDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQRCHKHLMGEDLESLNP 838
M ILERY++ S K + + + S+ E LK +I+ ++ +++LMGE L S++
Sbjct: 416 MRSILERYQKCSQTAKHMNFSNNTSDEKMKQEINLLKQQIDQLKLTNRYLMGEGLGSVSF 237
Query: 837 KXXXXXXXXXXXXLKHIRSRKSHLMAESISELQKKERSLQEENKALQKELSE 682
+ + +R++K LM + I LQ KE +L+ N LQ+ L E
Sbjct: 236 EELTQLESRLQRGINQVRAKKHELMLDEIRALQSKEHTLRINNMMLQERLEE 81
>gb|BQ654531.1|BQ654531 NXRV081_H04_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV081_H04 5' similar to Arabidopsis thaliana
sequence At5g15800 transcription factor (AGL2) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 436
Score = 127 bits (271), Expect(3) = 8e-038
Identities = 52/68 (76%), Positives = 62/68 (91%)
Frame = -1 / +2
Query: 1224 RDRRQAKMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGK 1045
+ +R MGRG+VQL+RIENKINRQVTFSKRRNGLLKKA+E+SVLCDAEVA+I+FS +GK
Sbjct: 41 KKQRDLAMGRGRVQLRRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGK 220
Query: 1044 LYEYASDS 1021
LYE+AS S
Sbjct: 221 LYEFASSS 244
Score = 37.3 bits (75), Expect(3) = 8e-038
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -1 / +3
Query: 924 EYRKLKAKIETIQRCHKHLMGEDLESLN 841
E KLK K+E +QR HL+GE L LN
Sbjct: 339 EVTKLKGKVELLQRSQTHLLGEXLXPLN 422
Score = 32.2 bits (64), Expect(3) = 8e-038
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1 / +2
Query: 1029 SDSRMDKILERYERYSYAEKALISAESESEGNW 931
+ S M+K LERYE+ SYA + NW
Sbjct: 233 ASSSMNKTLERYEKCSYAMQDTTGVSDREAQNW 331
>gb|CX650850.1|CX650850 COLD1_48_B09.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_48_B09_A029 5', mRNA sequence
Length = 814
Score = 102 bits (217), Expect(2) = 1e-037
Identities = 38/67 (56%), Positives = 58/67 (86%)
Frame = -1 / +1
Query: 1227 SRDRRQAKMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKG 1048
+ +++ +MGRG+ +L++IE+ +RQVTFSKRRNGLLKKA+E+SVLCD E+ +IV SP+G
Sbjct: 58 ANEKKGRRMGRGRTRLRKIESATSRQVTFSKRRNGLLKKAYELSVLCDVELGLIVLSPRG 237
Query: 1047 KLYEYAS 1027
K++E++S
Sbjct: 238 KVHEFSS 258
Score = 75.8 bits (159), Expect(2) = 1e-037
Identities = 37/114 (32%), Positives = 60/114 (52%)
Frame = -1 / +1
Query: 1029 SDSRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQRCHKHLMGEDLE 850
S + + K+LERYE+ S K A+ E E ++ +IE ++R + ++GE+L
Sbjct: 253 SSTCVQKMLERYEKCSEGSKTTSIAKEEDPKALKREIANMEERIEILERTQRKMLGEELA 432
Query: 849 SLNPKXXXXXXXXXXXXLKHIRSRKSHLMAESISELQKKERSLQEENKALQKEL 688
S K L++IR+RKS ++ I +LQ+KER EEN L+K +
Sbjct: 433 SCALKDLNQLESQVERGLRNIRARKSEILVTQIEQLQRKERMFSEENNFLRKRI 594
>gb|DR069454.1|DR069454 RTDK1_7_H04.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_7_H04_A029 3', mRNA sequence
Length = 871
Score = 99.1 bits (210), Expect(2) = 3e-037
Identities = 38/60 (63%), Positives = 53/60 (88%)
Frame = -1 / +2
Query: 1206 KMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYAS 1027
+MGRG+ +L++IE+ +RQVTFSKRRNGLLKKA+E SVLCD E+ +IV SP+GK++E++S
Sbjct: 2 RMGRGRTRLRKIESATSRQVTFSKRRNGLLKKAYEXSVLCDVELGLIVLSPRGKVHEFSS 181
Score = 77.6 bits (163), Expect(2) = 3e-037
Identities = 38/114 (33%), Positives = 60/114 (52%)
Frame = -1 / +2
Query: 1029 SDSRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQRCHKHLMGEDLE 850
S + M K+LERYE+ S K A+ E E ++ +IE ++R + ++GE+L
Sbjct: 176 SSTCMQKMLERYEKCSEGSKTTSIAKEEDPKALKREIANMEERIEILERTQRKMLGEELA 355
Query: 849 SLNPKXXXXXXXXXXXXLKHIRSRKSHLMAESISELQKKERSLQEENKALQKEL 688
S K L++IR+RKS ++ I +LQ+KER EEN L+K +
Sbjct: 356 SCALKDLNQLESQVERGLRNIRARKSEILVTQIEQLQRKERMFSEENNFLRKRI 517
>gb|DR167232.1|DR167232 RTPHOS1_17_B11.g1_A029 Roots minus phosphorous Pinus taeda cDNA clone
RTPHOS1_17_B11_A029 5', mRNA sequence
Length = 798
Score = 117 bits (251), Expect(3) = 5e-037
Identities = 49/62 (79%), Positives = 57/62 (91%)
Frame = -1 / +1
Query: 1206 KMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYAS 1027
KMGRG+VQL+RIENKI+RQVTFSKRRNGL+KKA E+S+LCDAEV +IVFS K KLYE+AS
Sbjct: 154 KMGRGRVQLRRIENKISRQVTFSKRRNGLMKKAAELSILCDAEVGLIVFSNKDKLYEFAS 333
Query: 1026 DS 1021
S
Sbjct: 334 SS 339
Score = 53.8 bits (111), Expect(3) = 5e-037
Identities = 26/81 (32%), Positives = 41/81 (50%)
Frame = -1 / +1
Query: 924 EYRKLKAKIETIQRCHKHLMGEDLESLNPKXXXXXXXXXXXXLKHIRSRKSHLMAESISE 745
E LK +++ +QR +HL+GEDL L L+ + K+ M I E
Sbjct: 421 ELTHLKEEVDRLQRSRRHLLGEDLHQLGATDLQHLEQQLEEALQKVTLTKTQFMLHLIEE 600
Query: 744 LQKKERSLQEENKALQKELSE 682
L++KE+ L+ NK+L + SE
Sbjct: 601 LRRKEQLLEGINKSLLRNFSE 663
Score = 22.1 bits (42), Expect(3) = 5e-037
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1 / +1
Query: 1029 SDSRMDKILERYERYS 982
+ S M KILERY + S
Sbjct: 328 ASSSMTKILERYRKRS 375
>gb|BX252374.1|BX252374 BX252374 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP063E09 similar to AGAMOUS LIKE MADS BOX
PROTEIN, mRNA sequence
Length = 674
Score = 112 bits (240), Expect(3) = 5e-037
Identities = 46/60 (76%), Positives = 55/60 (91%)
Frame = -1 / +3
Query: 1206 KMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYAS 1027
KM RGK Q+K+IEN +RQVTFSKRRNGLLKKA+E+SVLCDAEV +IVFSP+GKLYE++S
Sbjct: 135 KMVRGKTQMKKIENVTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYEFSS 314
Score = 56.5 bits (117), Expect(3) = 5e-037
Identities = 26/76 (34%), Positives = 43/76 (56%)
Frame = -1 / +3
Query: 909 KAKIETIQRCHKHLMGEDLESLNPKXXXXXXXXXXXXLKHIRSRKSHLMAESISELQKKE 730
K KI ++ + ++GEDLES + K LKHIR+R + ++ + I +L+ KE
Sbjct: 429 KEKISILELTQRKMLGEDLESCSMKELNQLESQADRGLKHIRARLTKMLVDEIDQLKWKE 608
Query: 729 RSLQEENKALQKELSE 682
R + EEN L+K+ +
Sbjct: 609 RIVTEENLFLRKKCGD 656
Score = 24.4 bits (47), Expect(3) = 5e-037
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -1 / +3
Query: 1017 MDKILERYERYS 982
M K+LERY++YS
Sbjct: 321 MQKMLERYQKYS 356
>gb|DR058437.1|DR058437 RTNIT1_11_F11.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_11_F11_A029 5', mRNA sequence
Length = 795
Score = 107 bits (228), Expect(2) = 9e-037
Identities = 41/62 (66%), Positives = 55/62 (88%)
Frame = -1 / +3
Query: 1206 KMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYAS 1027
KMGRGK+++K+IEN ++RQVTF KRR GL+KKA+E+SVLCDA+VA+IVFS +GKLYE +
Sbjct: 198 KMGRGKIEIKKIENSVHRQVTFCKRRGGLMKKAYELSVLCDADVALIVFSSRGKLYELGT 377
Query: 1026 DS 1021
+
Sbjct: 378 SN 383
Score = 67.5 bits (141), Expect(2) = 9e-037
Identities = 34/116 (29%), Positives = 62/116 (53%)
Frame = -1 / +3
Query: 1029 SDSRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQRCHKHLMGEDLE 850
+++ M ILERY++ S K + + + S+ E LK +I+ ++ +++LMGE L
Sbjct: 387 NNNSMRSILERYQKCSQTAKHMNFSNNTSDEKMKQEINLLKQQIDQLKLTNRYLMGEGLG 566
Query: 849 SLNPKXXXXXXXXXXXXLKHIRSRKSHLMAESISELQKKERSLQEENKALQKELSE 682
S++ + + +R++K LM + I LQ KE +L+ N LQ++L E
Sbjct: 567 SVSFEELNQLESRLQRGINQVRAKKHELMLDEIRALQSKEHTLRINNMMLQEKLEE 734
>gb|CO364847.1|CO364847 RTK1_22_D10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_22_D10_A029 3', mRNA sequence
Length = 867
Score = 107 bits (228), Expect(2) = 2e-036
Identities = 41/62 (66%), Positives = 55/62 (88%)
Frame = -1 / -2
Query: 1206 KMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYAS 1027
KMGRGK+++K+IEN ++RQVTF KRR GL+KKA+E+SVLCDA+VA+IVFS +GKLYE +
Sbjct: 650 KMGRGKIEIKKIENSVHRQVTFCKRRGGLMKKAYELSVLCDADVALIVFSSRGKLYELGT 471
Query: 1026 DS 1021
+
Sbjct: 470 SN 465
Score = 66.6 bits (139), Expect(2) = 2e-036
Identities = 34/112 (30%), Positives = 59/112 (52%)
Frame = -1 / -2
Query: 1017 MDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQRCHKHLMGEDLESLNP 838
M ILERY++ S K + + + S+ E LK +I+ ++ +++LMGE L S++
Sbjct: 446 MRSILERYQKCSQTAKHMNFSNNTSDEKMKQEINLLKQQIDQLKLTNRYLMGEGLGSVSF 267
Query: 837 KXXXXXXXXXXXXLKHIRSRKSHLMAESISELQKKERSLQEENKALQKELSE 682
+ + +R++K LM + I LQ KE +L+ N LQ++L E
Sbjct: 266 EELNQLESRLQRGINQVRAKKHELMLDEIRALQSKEHTLRINNMMLQEKLEE 111
>gb|CV031753.1|CV031753 RTNACL1_3_B05.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_3_B05_A029 5', mRNA sequence
Length = 851
Score = 107 bits (228), Expect(2) = 2e-036
Identities = 41/62 (66%), Positives = 55/62 (88%)
Frame = -1 / +2
Query: 1206 KMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYAS 1027
KMGRGK+++K+IEN ++RQVTF KRR GL+KKA+E+SVLCDA+VA+IVFS +GKLYE +
Sbjct: 176 KMGRGKIEIKKIENSVHRQVTFCKRRGGLMKKAYELSVLCDADVALIVFSSRGKLYELGT 355
Query: 1026 DS 1021
+
Sbjct: 356 SN 361
Score = 66.6 bits (139), Expect(2) = 2e-036
Identities = 34/112 (30%), Positives = 59/112 (52%)
Frame = -1 / +2
Query: 1017 MDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQRCHKHLMGEDLESLNP 838
M ILERY++ S K + + + S+ E LK +I+ ++ +++LMGE L S++
Sbjct: 380 MRSILERYQKCSQTAKHMNFSNNTSDEKMKQEINLLKQQIDQLKLTNRYLMGEGLGSVSF 559
Query: 837 KXXXXXXXXXXXXLKHIRSRKSHLMAESISELQKKERSLQEENKALQKELSE 682
+ + +R++K LM + I LQ KE +L+ N LQ++L E
Sbjct: 560 EELNQLESRLQRGINQVRAKKHELMLDEIRALQSKEHTLRINNMMLQEKLEE 715
>gb|CO201105.1|CO201105 RTCNT2_3_D12.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_3_D12_A029 5', mRNA sequence
Length = 758
Score = 107 bits (228), Expect(2) = 2e-036
Identities = 41/62 (66%), Positives = 55/62 (88%)
Frame = -1 / +1
Query: 1206 KMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYAS 1027
KMGRGK+++K+IEN ++RQVTF KRR GL+KKA+E+SVLCDA+VA+IVFS +GKLYE +
Sbjct: 190 KMGRGKIEIKKIENSVHRQVTFCKRRGGLMKKAYELSVLCDADVALIVFSSRGKLYELGT 369
Query: 1026 DS 1021
+
Sbjct: 370 SN 375
Score = 66.6 bits (139), Expect(2) = 2e-036
Identities = 34/112 (30%), Positives = 58/112 (51%)
Frame = -1 / +1
Query: 1017 MDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQRCHKHLMGEDLESLNP 838
M ILERY++ S K + + + S+ E LK +I+ ++ +++LMGE L S++
Sbjct: 394 MRSILERYQKCSQTAKHMNFSNNTSDEKMKQEINLLKQQIDQLKLTNRYLMGEGLGSVSF 573
Query: 837 KXXXXXXXXXXXXLKHIRSRKSHLMAESISELQKKERSLQEENKALQKELSE 682
+ + +R++K LM + I LQ KE +L+ N LQ+ L E
Sbjct: 574 EELTQLESRLQRGINQVRAKKHELMLDEIRALQSKEHTLRINNMMLQERLEE 729
>gb|CF670172.1|CF670172 RTCNT1_48_B11.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_48_B11_A029 5', mRNA sequence
Length = 788
Score = 107 bits (229), Expect(2) = 4e-036
Identities = 43/62 (69%), Positives = 54/62 (87%)
Frame = -1 / +2
Query: 1206 KMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYAS 1027
KMGRGK+Q+K+IEN ++RQVTF KRR GL+KKA+E+SVLCDAEVA+IVFS GKLYE +
Sbjct: 41 KMGRGKIQIKKIENSVHRQVTFCKRRGGLMKKAYELSVLCDAEVALIVFSGGGKLYELGT 220
Query: 1026 DS 1021
+
Sbjct: 221 SN 226
Score = 64.8 bits (135), Expect(2) = 4e-036
Identities = 33/112 (29%), Positives = 58/112 (51%)
Frame = -1 / +2
Query: 1017 MDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQRCHKHLMGEDLESLNP 838
M ILERY++ S K + + + S+ E LK +I+ ++ +++LMG+ L S++
Sbjct: 242 MRSILERYQKCSQTAKHMNFSNNTSDEKMKQEINLLKQQIDQLKLTNRYLMGKGLGSVSF 421
Query: 837 KXXXXXXXXXXXXLKHIRSRKSHLMAESISELQKKERSLQEENKALQKELSE 682
+ + +R++K LM + I LQ KE +L+ N LQ+ L E
Sbjct: 422 EELTQLESRLQRGINQVRAKKHELMLDEIRALQSKEHTLRINNMMLQERLEE 577
>gb|CF475501.1|CF475501 RTWW2_12_G12.g1_A021 Well-watered loblolly pine roots WW2 Pinus taeda
cDNA clone RTWW2_12_G12_A021 5', mRNA sequence
Length = 779
Score = 119 bits (254), Expect(2) = 4e-036
Identities = 48/66 (72%), Positives = 59/66 (89%)
Frame = -1 / +2
Query: 1218 RRQAKMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLY 1039
+R+ +M RGK Q+KRIEN +RQVTFSKRRNGLLKKA+E+SVLCDAEV +I+FSP+GKLY
Sbjct: 53 KRERRMVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSPRGKLY 232
Query: 1038 EYASDS 1021
E+AS S
Sbjct: 233 EFASPS 250
Score = 53.3 bits (110), Expect(2) = 4e-036
Identities = 24/79 (30%), Positives = 43/79 (54%)
Frame = -1 / +2
Query: 912 LKAKIETIQRCHKHLMGEDLESLNPKXXXXXXXXXXXXLKHIRSRKSHLMAESISELQKK 733
++ +I ++ + ++GE LES + L HIR+RK+ ++ + I L++K
Sbjct: 365 MEEQIRILESTQRKMLGEGLESCSMTELNKLESQAERGLSHIRARKTEILVDQIECLKRK 544
Query: 732 ERSLQEENKALQKELSERQ 676
ER L EEN L ++ +RQ
Sbjct: 545 ERLLSEENALLSRKWVDRQ 601
>gb|DR384822.1|DR384822 RTHG1_4_G03.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_4_G03_A029 5', mRNA sequence
Length = 668
Score = 119 bits (254), Expect(2) = 4e-036
Identities = 48/66 (72%), Positives = 59/66 (89%)
Frame = -1 / +2
Query: 1218 RRQAKMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLY 1039
+R+ +M RGK Q+KRIEN +RQVTFSKRRNGLLKKA+E+SVLCDAEV +I+FSP+GKLY
Sbjct: 104 KRERRMVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSPRGKLY 283
Query: 1038 EYASDS 1021
E+AS S
Sbjct: 284 EFASPS 301
Score = 53.3 bits (110), Expect(2) = 4e-036
Identities = 24/79 (30%), Positives = 43/79 (54%)
Frame = -1 / +2
Query: 912 LKAKIETIQRCHKHLMGEDLESLNPKXXXXXXXXXXXXLKHIRSRKSHLMAESISELQKK 733
++ +I ++ + ++GE LES + L HIR+RK+ ++ + I L++K
Sbjct: 416 MEEQIRILESTQRKMLGEGLESCSMTELNKLESQAERGLSHIRARKTEILVDQIECLKRK 595
Query: 732 ERSLQEENKALQKELSERQ 676
ER L EEN L ++ +RQ
Sbjct: 596 ERLLSEENALLSRKWVDRQ 652
>gb|CO163263.1|CO163263 FLD1_40_B04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_40_B04_A029 5', mRNA sequence
Length = 841
Score = 115 bits (246), Expect(2) = 6e-036
Identities = 48/68 (70%), Positives = 57/68 (83%)
Frame = -1 / +2
Query: 1224 RDRRQAKMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGK 1045
R + +M RGK Q+KRIEN +RQVTFSKRRNGLLKKA+E+SVLCDAEV +IVFSP+GK
Sbjct: 23 RVEERRRMVRGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGK 202
Query: 1044 LYEYASDS 1021
LYE+ S S
Sbjct: 203 LYEFGSSS 226
Score = 56.5 bits (117), Expect(2) = 6e-036
Identities = 27/98 (27%), Positives = 48/98 (48%)
Frame = -1 / +2
Query: 1023 SRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQRCHKHLMGEDLESL 844
S M KI+ERY++YS + E+ + E ++ I ++ + ++GE L S
Sbjct: 221 SSMQKIVERYQKYSDENSMNKTVREENTQSLKREIANMEETIRLLESTQRKMLGEGLASC 400
Query: 843 NPKXXXXXXXXXXXXLKHIRSRKSHLMAESISELQKKE 730
+ K L HIRSR++ ++ I +L+KK+
Sbjct: 401 SVKELNNLESQAERGLSHIRSRRTEILKNQIDQLKKKD 514
>gb|CO363306.1|CO363306 RTK1_8_H10.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_8_H10_A029 5', mRNA sequence
Length = 771
Score = 95.0 bits (201), Expect(2) = 8e-036
Identities = 38/50 (76%), Positives = 47/50 (94%)
Frame = -1 / +3
Query: 1170 ENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYASDS 1021
EN +RQVTFSKRRNGLLKKA+E+SVLCDAEVA++VFSP+GKLY++A+ S
Sbjct: 6 ENATSRQVTFSKRRNGLLKKAYELSVLCDAEVALMVFSPRGKLYDFANPS 155
Score = 76.7 bits (161), Expect(2) = 8e-036
Identities = 37/110 (33%), Positives = 58/110 (52%)
Frame = -1 / +3
Query: 1017 MDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQRCHKHLMGEDLESLNP 838
M K+LERYE+ S K A+ E E ++ +IE ++R + ++GE+L S
Sbjct: 156 MQKMLERYEKCSEGSKTTSIAKEEDPKALKREIANMEERIEILERTQRKMLGEELASCAL 335
Query: 837 KXXXXXXXXXXXXLKHIRSRKSHLMAESISELQKKERSLQEENKALQKEL 688
K L++IR+RKS ++ I +LQ+KER EEN L+K +
Sbjct: 336 KDLNQLESQVERGLRNIRARKSEILVTQIEQLQRKERMFSEENNFLRKRI 485
>gb|U90344.1|PRU90344 Pinus radiata putative MADS box transcription factor PrMADS9 mRNA,
complete cds
Length = 1038
Score = 117 bits (251), Expect(2) = 1e-035
Identities = 48/66 (72%), Positives = 58/66 (87%)
Frame = -1 / +2
Query: 1218 RRQAKMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLY 1039
R + +M RGK Q+KRIEN +RQVTFSKRRNGLLKKA+E+SVLCDAEV +I+FSP+GKLY
Sbjct: 104 RERRRMVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSPRGKLY 283
Query: 1038 EYASDS 1021
E+AS S
Sbjct: 284 EFASPS 301
Score = 53.3 bits (110), Expect(2) = 1e-035
Identities = 24/79 (30%), Positives = 43/79 (54%)
Frame = -1 / +2
Query: 912 LKAKIETIQRCHKHLMGEDLESLNPKXXXXXXXXXXXXLKHIRSRKSHLMAESISELQKK 733
++ +I ++ + ++GE LES + L HIR+RK+ ++ + I L++K
Sbjct: 416 MEEQIRILESTQRKMLGEGLESCSMAELNKLESQAERGLSHIRARKTEILVDQIECLKRK 595
Query: 732 ERSLQEENKALQKELSERQ 676
ER L EEN L ++ +RQ
Sbjct: 596 ERLLSEENALLSRKWVDRQ 652
>gb|CV035951.1|CV035951 RTNACL1_43_D02.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_43_D02_A029 5', mRNA sequence
Length = 860
Score = 148 bits (318), Expect = 7e-035
Identities = 70/176 (39%), Positives = 110/176 (62%)
Frame = -1 / +3
Query: 1206 KMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYAS 1027
+MG+ K+++KRI+N RQVTFSKR+NGLLKKA E+SVLCDAEVA+I+FS GK+ E+AS
Sbjct: 3 QMGKTKMEMKRIQNPSRRQVTFSKRKNGLLKKAFELSVLCDAEVALIIFSETGKICEFAS 182
Query: 1026 DSRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQRCHKHLMGEDLES 847
M ILE+Y Y+ + + S+ +S + + L+ K+ +++ ++++GEDL+S
Sbjct: 183 HDDMATILEKYRIYTETDGNMESSSVQSVKIRESQLKALREKMNKLKKKERNMVGEDLDS 362
Query: 846 LNPKXXXXXXXXXXXXLKHIRSRKSHLMAESISELQKKERSLQEENKALQKELSER 679
L K +K I +K ++ +S L +K R+L+EE L+ +L R
Sbjct: 363 LTMKELQRLENQLQIGIKRISDKKMKILVQSSKLLLQKVRALEEEKIELETKLRIR 530
>gb|CF476348.1|CF476348 RTWW2_22_G12.g1_A021 Well-watered loblolly pine roots WW2 Pinus taeda
cDNA clone RTWW2_22_G12_A021 5', mRNA sequence
Length = 757
Score = 104 bits (221), Expect(3) = 3e-034
Identities = 45/65 (69%), Positives = 51/65 (78%)
Frame = -1 / +2
Query: 1215 RQAKMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYE 1036
R MGRGKV ++RIEN +RQVTFSKRRNGLLKKA E+ VLCDAEV VI+FS GK YE
Sbjct: 245 RVGGMGRGKVVVRRIENSTSRQVTFSKRRNGLLKKARELGVLCDAEVGVIIFSNTGKRYE 424
Query: 1035 YASDS 1021
A+ S
Sbjct: 425 LATSS 439
Score = 57.0 bits (118), Expect(3) = 3e-034
Identities = 24/75 (32%), Positives = 42/75 (56%)
Frame = -1 / +2
Query: 933 WCHEYRKLKAKIETIQRCHKHLMGEDLESLNPKXXXXXXXXXXXXLKHIRSRKSHLMAES 754
W E ++K + + +Q ++HL+GE+L +L+ K L+ +R RK ++ +
Sbjct: 527 WRKEVMQMKEEFKRLQDQNRHLLGEELSALSVKDLHHLEQVLELTLQRVRDRKDKILNDE 706
Query: 753 ISELQKKERSLQEEN 709
+ EL +KER L EEN
Sbjct: 707 LEELSQKERCLYEEN 751
Score = 23.5 bits (45), Expect(3) = 3e-034
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1 / +2
Query: 1023 SRMDKILERYERYS 982
S M I+ERYE+Y+
Sbjct: 434 SSMKSIIERYEKYN 475
>gb|DR090622.1|DR090622 RTAL1_16_G11.b1_A029 Roots plus added aluminum Pinus taeda cDNA clone
RTAL1_16_G11_A029 3', mRNA sequence
Length = 859
Score = 91.8 bits (194), Expect(2) = 4e-034
Identities = 37/46 (80%), Positives = 43/46 (93%)
Frame = -1 / +2
Query: 1158 NRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYASDS 1021
+RQVTFSKRRNGLLKKA+E+SVLCDAEV +IVFSP+GKLYE+ S S
Sbjct: 2 SRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYEFGSSS 139
Score = 74.4 bits (156), Expect(2) = 4e-034
Identities = 36/114 (31%), Positives = 59/114 (51%)
Frame = -1 / +2
Query: 1023 SRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQRCHKHLMGEDLESL 844
S M KI+ERY++YS + E+ + E ++ I ++ + ++GE L S
Sbjct: 134 SSMQKIVERYQKYSDENSMNKTVREENTQSLKREIANMEETIRLLESTQRKMLGEGLASC 313
Query: 843 NPKXXXXXXXXXXXXLKHIRSRKSHLMAESISELQKKERSLQEENKALQKELSE 682
+ K L HIRSR++ ++ I +L+KKER L EEN L+K+ +E
Sbjct: 314 SVKELNNLESQAERGLSHIRSRRTEILKNQIDQLKKKERVLSEENAFLRKKCAE 475
>gb|CO175129.1|CO175129 NDL1_48_D06.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_48_D06_A029 5', mRNA sequence
Length = 804
Score = 91.8 bits (194), Expect(2) = 4e-034
Identities = 37/46 (80%), Positives = 43/46 (93%)
Frame = -1 / +2
Query: 1158 NRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYASDS 1021
+RQVTFSKRRNGLLKKA+E+SVLCDAEV +IVFSP+GKLYE+ S S
Sbjct: 5 SRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGKLYEFGSSS 142
Score = 74.4 bits (156), Expect(2) = 4e-034
Identities = 36/114 (31%), Positives = 59/114 (51%)
Frame = -1 / +2
Query: 1023 SRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQRCHKHLMGEDLESL 844
S M KI+ERY++YS + E+ + E ++ I ++ + ++GE L S
Sbjct: 137 SSMQKIVERYQKYSDENSMNKTVREENTQSLKREIANMEETIRLLESTQRKMLGEGLASC 316
Query: 843 NPKXXXXXXXXXXXXLKHIRSRKSHLMAESISELQKKERSLQEENKALQKELSE 682
+ K L HIRSR++ ++ I +L+KKER L EEN L+K+ +E
Sbjct: 317 SVKELNNLESQAERGLSHIRSRRTEILKNQIDQLKKKERVLSEENAFLRKKCAE 478
>gb|DR178004.1|DR178004 RTMNUT1_8_E05.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_8_E05_A029 5', mRNA sequence
Length = 779
Score = 107 bits (228), Expect(2) = 4e-034
Identities = 41/62 (66%), Positives = 55/62 (88%)
Frame = -1 / +1
Query: 1206 KMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYAS 1027
KMGRGK+++K+IEN ++RQVTF KRR GL+KKA+E+SVLCDA+VA+IVFS +GKLYE +
Sbjct: 262 KMGRGKIEIKKIENSVHRQVTFCKRRGGLMKKAYELSVLCDADVALIVFSSRGKLYELGT 441
Query: 1026 DS 1021
+
Sbjct: 442 SN 447
Score = 58.8 bits (122), Expect(2) = 4e-034
Identities = 30/103 (29%), Positives = 53/103 (51%)
Frame = -1 / +1
Query: 1017 MDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQRCHKHLMGEDLESLNP 838
M ILERY++ S K + + + S+ E LK +I+ ++ +++LMGE L S++
Sbjct: 466 MRSILERYQKCSQTAKHMNFSNNTSDEKMKQEINLLKQQIDQLKLTNRYLMGEGLGSVSF 645
Query: 837 KXXXXXXXXXXXXLKHIRSRKSHLMAESISELQKKERSLQEEN 709
+ + +R++K LM + I LQ KE +L+ N
Sbjct: 646 EELTQLESRLQRGINQVRAKKHELMLDEIRALQSKEHTLRINN 774
>gb|CF392697.1|CF392697 RTDR3_5_H09.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_5_H09_A022 5', mRNA sequence
Length = 727
Score = 122 bits (262), Expect(3) = 9e-034
Identities = 51/62 (82%), Positives = 58/62 (93%)
Frame = -1 / +2
Query: 1206 KMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYAS 1027
KMGRG VQL+RIENKINRQVTFSKRRNGL+KKA E+S+LCDAEVA+IVFS KGKLYE++S
Sbjct: 278 KMGRGPVQLRRIENKINRQVTFSKRRNGLIKKASELSILCDAEVALIVFSNKGKLYEFSS 457
Query: 1026 DS 1021
S
Sbjct: 458 SS 463
Score = 36.3 bits (73), Expect(3) = 9e-034
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -1 / +2
Query: 924 EYRKLKAKIETIQRCHKHLMGEDLESLNPKXXXXXXXXXXXXLKHIRSRKSHLMAESISE 745
E LK +++ +QR +HL+GEDL L L+ + K+ M I E
Sbjct: 545 ELTHLKEEVDRLQRSRRHLLGEDLHQLGATDLQHLEQQLEEALQKVTLTKTQFMLHLIEE 724
Query: 744 L 742
L
Sbjct: 725 L 727
Score = 23.5 bits (45), Expect(3) = 9e-034
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1 / +2
Query: 1029 SDSRMDKILERYERYS 982
S S M KILERY + S
Sbjct: 452 SSSSMTKILERYRKRS 499
>gb|CF477439.1|CF477439 RTWW3_7_F06.g1_A022 Well-watered loblolly pine roots WW3 Pinus taeda
cDNA clone RTWW3_7_F06_A022 5', mRNA sequence
Length = 758
Score = 122 bits (262), Expect(3) = 6e-033
Identities = 51/62 (82%), Positives = 58/62 (93%)
Frame = -1 / +2
Query: 1206 KMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYAS 1027
KMGRG VQL+RIENKINRQVTFSKRRNGL+KKA E+S+LCDAEVA+IVFS KGKLYE++S
Sbjct: 143 KMGRGPVQLRRIENKINRQVTFSKRRNGLIKKASELSILCDAEVALIVFSNKGKLYEFSS 322
Query: 1026 DS 1021
S
Sbjct: 323 SS 328
Score = 33.6 bits (67), Expect(3) = 6e-033
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1 / +2
Query: 924 EYRKLKAKIETIQRCHKHLMGEDLESL 844
E LK +++ +QR +HL+GEDL L
Sbjct: 410 ELTHLKEEVDRLQRSRRHLLGEDLHQL 490
Score = 23.5 bits (45), Expect(3) = 6e-033
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1 / +2
Query: 1029 SDSRMDKILERYERYS 982
S S M KILERY + S
Sbjct: 317 SSSSMTKILERYRKRS 364
>gb|BX249866.1|BX249866 BX249866 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP029F05, mRNA sequence
Length = 676
Score = 141 bits (302), Expect = 1e-032
Identities = 66/171 (38%), Positives = 105/171 (61%)
Frame = -1 / +2
Query: 1191 KVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYASDSRMD 1012
K+++KRI+N RQVTFSKR+NGLLKKA E+SVLCDAE+A+I+FS GK+ E+AS M
Sbjct: 8 KMEMKRIQNPSRRQVTFSKRKNGLLKKAFELSVLCDAEIALIIFSETGKICEFASHDDMA 187
Query: 1011 KILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQRCHKHLMGEDLESLNPKX 832
ILE+Y Y+ + + S+ +S + + L+ K+ +++ +++ GE+L+SL K
Sbjct: 188 TILEKYRTYTETDGNMESSSVQSVKIAESQLKALREKMNKLKKKERNMAGEELDSLTIKE 367
Query: 831 XXXXXXXXXXXLKHIRSRKSHLMAESISELQKKERSLQEENKALQKELSER 679
+K I +K ++ +S L +K R+L+EE L+ +L R
Sbjct: 368 LQRLENQLQIGIKRISDKKMKMLVQSSKLLLEKVRALEEEKIELETKLRTR 520
>gb|CX713803.1|CX713803 RTPQ1_13_F12.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_13_F12_A032 3', mRNA sequence
Length = 586
Score = 120 bits (256), Expect(2) = 2e-032
Identities = 48/64 (75%), Positives = 59/64 (92%)
Frame = -1 / -3
Query: 1212 QAKMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEY 1033
+ +MGRGK+++KRIEN NRQVTFSKRRNGLLKKA+E+SVLCDAEVAVI+FS +GKLYE+
Sbjct: 491 RTRMGRGKIEIKRIENTTNRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSNRGKLYEF 312
Query: 1032 ASDS 1021
A+ S
Sbjct: 311 ANKS 300
Score = 40.5 bits (82), Expect(2) = 2e-032
Identities = 16/68 (23%), Positives = 40/68 (58%)
Frame = -1 / -3
Query: 912 LKAKIETIQRCHKHLMGEDLESLNPKXXXXXXXXXXXXLKHIRSRKSHLMAESISELQKK 733
L+ +I+ + + +++LMG++L +L+ K ++ +RSRK ++ + + L+++
Sbjct: 212 LRQEIDILTKVNRNLMGDNLSALSLKELDLLEARIQRGIQSVRSRKDEILHQELEALRER 33
Query: 732 ERSLQEEN 709
E+ L +N
Sbjct: 32 EQILLVQN 9
>gb|CF394057.1|CF394057 RTDS2_3_D04.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_3_D04_A021 3', mRNA sequence
Length = 611
Score = 107 bits (228), Expect(2) = 7e-032
Identities = 41/62 (66%), Positives = 55/62 (88%)
Frame = -1 / -3
Query: 1206 KMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYAS 1027
KMGRGK+++K+IEN ++RQVTF KRR GL+KKA+E+SVLCDA+VA+IVFS +GKLYE +
Sbjct: 480 KMGRGKIEIKKIENSVHRQVTFCKRRGGLMKKAYELSVLCDADVALIVFSSRGKLYELGT 301
Query: 1026 DS 1021
+
Sbjct: 300 SN 295
Score = 51.0 bits (105), Expect(2) = 7e-032
Identities = 27/97 (27%), Positives = 51/97 (52%)
Frame = -1 / -3
Query: 1029 SDSRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQRCHKHLMGEDLE 850
+++ M ILERY++ S K + + + S+ E LK +I+ ++ +++LMGE L
Sbjct: 291 NNNSMRSILERYQKCSQTAKHMNFSNNTSDEKMKQEINLLKQQIDQLKLTNRYLMGEGLG 112
Query: 849 SLNPKXXXXXXXXXXXXLKHIRSRKSHLMAESISELQ 739
S++ + + +R++K LM + I LQ
Sbjct: 111 SVSFEELTQLESRLXRGINQVRAKKHELMLDEIRALQ 1
>gb|U90346.1|PRU90346 Pinus radiata putative MADS box transcription factor PrMADS5 mRNA,
complete cds
Length = 1301
Score = 116 bits (248), Expect(2) = 1e-031
Identities = 48/70 (68%), Positives = 58/70 (82%)
Frame = -1 / +1
Query: 1230 GSRDRRQAKMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPK 1051
G + + + +M RGK Q+KRIEN +RQVT SKRRNGLLKKA+E+SVLCDAEV +IVFSP
Sbjct: 142 GQKGKERRRMVRGKTQMKRIENATSRQVTLSKRRNGLLKKAYELSVLCDAEVGLIVFSPS 321
Query: 1050 GKLYEYASDS 1021
GKLYE+AS S
Sbjct: 322 GKLYEFASTS 351
Score = 40.9 bits (83), Expect(2) = 1e-031
Identities = 18/78 (23%), Positives = 38/78 (48%)
Frame = -1 / +1
Query: 924 EYRKLKAKIETIQRCHKHLMGEDLESLNPKXXXXXXXXXXXXLKHIRSRKSHLMAESISE 745
E ++ ++ +Q + ++GE L + K L H+R+ K+ ++ + I +
Sbjct: 445 EIENMEKRVRILQSTQRKMLGEGLALCSIKELNQLEGQVERGLNHVRATKTKVLLDEIEK 624
Query: 744 LQKKERSLQEENKALQKE 691
L++KE +EE L K+
Sbjct: 625 LKQKEHVFREEKALLHKK 678
>gb|CX650456.1|CX650456 COLD1_45_F12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_45_F12_A029 5', mRNA sequence
Length = 852
Score = 117 bits (250), Expect(2) = 2e-031
Identities = 48/62 (77%), Positives = 57/62 (91%)
Frame = -1 / +1
Query: 1206 KMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYAS 1027
KMGRG+VQL+ IENKINRQVTFSKRR GL+KKA E+S+LCDAEVAVIVFS +GKLY+++S
Sbjct: 286 KMGRGRVQLRMIENKINRQVTFSKRRTGLMKKASELSILCDAEVAVIVFSNRGKLYQFSS 465
Query: 1026 DS 1021
S
Sbjct: 466 SS 471
Score = 39.6 bits (80), Expect(2) = 2e-031
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = -1 / +1
Query: 924 EYRKLKAKIETIQRCHKHLMGEDLESLNPKXXXXXXXXXXXXLKHIRSRKSHLMAESISE 745
E +LK K + +QR +H+MGEDL+ L+ K LK ++ +K + +
Sbjct: 553 ELTELKRKTDNLQRWRRHVMGEDLDQLSVKELQQLEQQLEEGLKQVKLKKEQQLEGAKKS 732
Query: 744 LQKK 733
KK
Sbjct: 733 RHKK 744
>gb|CF401468.1|CF401468 RTWW1_12_E09.g1_A015 Well-watered loblolly pine roots WW1 Pinus taeda
cDNA clone RTWW1_12_E09_A015 5', mRNA sequence
Length = 811
Score = 116 bits (249), Expect(2) = 3e-031
Identities = 48/62 (77%), Positives = 57/62 (91%)
Frame = -1 / +3
Query: 1206 KMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYAS 1027
KMGRG+VQL+ IENKINRQVTFSKRR+GL+KKA E+S+LCDAEVA+IVFS GKLYE++S
Sbjct: 30 KMGRGRVQLRMIENKINRQVTFSKRRSGLMKKASELSILCDAEVAMIVFSSTGKLYEFSS 209
Query: 1026 DS 1021
S
Sbjct: 210 SS 215
Score = 39.6 bits (80), Expect(2) = 3e-031
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = -1 / +3
Query: 924 EYRKLKAKIETIQRCHKHLMGEDLESLNPKXXXXXXXXXXXXLKHIRSRKSHLMAESISE 745
E +LK K + +QR +H+MGEDL+ L+ K LK ++ +K + +
Sbjct: 297 ELTELKRKTDNLQRWRRHVMGEDLDQLSVKELQQLEQQLEEGLKQVKLKKEQQLEGAKKS 476
Query: 744 LQKK 733
KK
Sbjct: 477 RHKK 488
>gb|CX713558.1|CX713558 RTPQ1_10_E02.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_10_E02_A032 5', mRNA sequence
Length = 513
Score = 115 bits (246), Expect(2) = 3e-031
Identities = 48/68 (70%), Positives = 57/68 (83%)
Frame = -1 / +2
Query: 1224 RDRRQAKMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGK 1045
R + +M RGK Q+KRIEN +RQVTFSKRRNGLLKKA+E+SVLCDAEV +IVFSP+GK
Sbjct: 71 RVEERRRMVRGKTQMKRIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVGLIVFSPRGK 250
Query: 1044 LYEYASDS 1021
LYE+ S S
Sbjct: 251 LYEFGSSS 274
Score = 40.9 bits (83), Expect(2) = 3e-031
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = -1 / +2
Query: 1023 SRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQRCHKHLMGEDLESL 844
S M KI+ERY++YS + E+ + E ++ I ++ + ++GE L S
Sbjct: 269 SSMQKIVERYQKYSDENSMNKTVREENTQSLKREIANMEETIRLLESTQRKMLGEGLASC 448
Query: 843 NPKXXXXXXXXXXXXLKHIRS 781
+ K L HIRS
Sbjct: 449 SVKELNNLESQAERGLSHIRS 511
>gb|CO365540.1|CO365540 RTK1_17_D10.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_17_D10_A029 5', mRNA sequence
Length = 877
Score = 117 bits (251), Expect(3) = 4e-031
Identities = 49/62 (79%), Positives = 57/62 (91%)
Frame = -1 / +2
Query: 1206 KMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYAS 1027
KMGRG+VQL+RIENKI+RQVTFSKRRNGL+KKA E+S+LCDAEV +IVFS K KLYE+AS
Sbjct: 350 KMGRGRVQLRRIENKISRQVTFSKRRNGLMKKAAELSILCDAEVGLIVFSNKDKLYEFAS 529
Query: 1026 DS 1021
S
Sbjct: 530 SS 535
Score = 33.6 bits (67), Expect(3) = 4e-031
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1 / +2
Query: 924 EYRKLKAKIETIQRCHKHLMGEDLESL 844
E LK +++ +QR +HL+GEDL L
Sbjct: 617 ELTHLKEEVDRLQRSRRHLLGEDLHQL 697
Score = 22.1 bits (42), Expect(3) = 4e-031
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1 / +2
Query: 1029 SDSRMDKILERYERYS 982
+ S M KILERY + S
Sbjct: 524 ASSSMTKILERYRKRS 571
>gb|CO161575.1|CO161575 FLD1_29_F09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_29_F09_A029 5', mRNA sequence
Length = 909
Score = 120 bits (256), Expect(2) = 7e-031
Identities = 48/64 (75%), Positives = 59/64 (92%)
Frame = -1 / +1
Query: 1212 QAKMGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEY 1033
+ +MGRGK+++KRIEN NRQVTFSKRRNGLLKKA+E+SVLCDAEVAVI+FS +GKLYE+
Sbjct: 181 RTRMGRGKIEIKRIENTTNRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSNRGKLYEF 360
Query: 1032 ASDS 1021
A+ S
Sbjct: 361 ANKS 372
Score = 35.0 bits (70), Expect(2) = 7e-031
Identities = 17/71 (23%), Positives = 37/71 (52%)
Frame = -1 / +1
Query: 912 LKAKIETIQRCHKHLMGEDLESLNPKXXXXXXXXXXXXLKHIRSRKSHLMAESISELQKK 733
L+ +I+ + + +++LMG++L +L+ K ++ +RSRK ++ L+ K
Sbjct: 460 LRQEIDILTKVNRNLMGDNLSALSLKELDLLEARIQRGIQSVRSRKEQILLVQNDFLRNK 639
Query: 732 ERSLQEENKAL 700
Q EN ++
Sbjct: 640 IAECQCENASV 672
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 506,638,474
Number of Sequences: 355925
Number of extensions: 6023408
Number of successful extensions: 29891
Number of sequences better than 1.0e-020: 198
length of database: 72,425,745
effective HSP length: 54
effective length of database: 53,205,795
effective search space used: 19632938355
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)