TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3696657.2.1
(1531 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR050772.1|DR050772 RTBOR1_25_C10.g1_A029 Roots plus add... 131 8e-048
gb|DR096226.1|DR096226 STRR1_26_D02.g1_A033 Stem Response R... 118 1e-040
gb|DR014638.1|DR014638 HEAT1_50_E08.g1_A029 Root at 37 C fo... 112 2e-039
gb|DR068962.1|DR068962 RTDK1_3_H10.g1_A029 Roots, dark Pinu... 111 3e-039
gb|CO197457.1|CO197457 GEO1_6_C03.g1_A029 Root gravitropism... 111 2e-038
gb|DR072028.1|DR072028 RTDK1_23_D06.g1_A029 Roots, dark Pin... 123 1e-035
gb|CO370082.1|CO370082 RTK1_65_H06.b1_A029 Roots minus pota... 127 4e-035
gb|CF665534.1|CF665534 RTCNT1_16_D01.g1_A029 Root control P... 125 1e-034
gb|BX252155.1|BX252155 BX252155 Pinus pinaster differenciat... 96 4e-034
gb|CO196845.1|CO196845 GEO1_2_A06.b1_A029 Root gravitropism... 122 1e-032
gb|DR050690.1|DR050690 RTBOR1_25_C10.b1_A029 Roots plus add... 87 8e-032
gb|DR057194.1|DR057194 RTNIT1_4_E07.b1_A029 Roots minus nit... 115 4e-031
gb|BX253476.1|BX253476 BX253476 Pinus pinaster differenciat... 126 4e-030
gb|BI397545.1|BI397545 NXPV_100_F08_F NXPV (Nsf Xylem Plani... 118 7e-030
gb|BX250521.1|BX250521 BX250521 Pinus pinaster differenciat... 112 9e-030
gb|CO172772.1|CO172772 NDL1_31_G01.g1_A029 Needles control ... 115 6e-029
gb|DR057265.1|DR057265 RTNIT1_4_E07.g1_A029 Roots minus nit... 111 6e-029
gb|DR022672.1|DR022672 STRS1_52_E06.g1_A034 Shoot tip pitch... 124 1e-027
gb|DR099658.1|DR099658 STRR1_57_E02.b1_A033 Stem Response R... 119 6e-026
gb|DR099702.1|DR099702 STRR1_57_E02.g1_A033 Stem Response R... 119 6e-026
gb|BG673824.1|BG673824 NXPV_075_E12_F NXPV (Nsf Xylem Plani... 118 8e-026
gb|BQ695682.1|BQ695682 NXPV_031_D11_F NXPV (Nsf Xylem Plani... 118 8e-026
gb|BQ695692.1|BQ695692 NXPV_031_E12_F NXPV (Nsf Xylem Plani... 118 8e-026
gb|DR682452.1|DR682452 EST1072527 Normalized pine embryo li... 116 4e-025
gb|BI202850.1|BI202850 NXPV_091_D07_F NXPV (Nsf Xylem Plani... 115 1e-024
gb|BQ695778.1|BQ695778 NXPV_032_E11_F NXPV (Nsf Xylem Plani... 113 3e-024
gb|DR092421.1|DR092421 STRR1_1_G02.b1_A033 Stem Response Re... 113 3e-024
gb|DR097874.1|DR097874 STRR1_37_D04.g1_A033 Stem Response R... 113 3e-024
gb|DR692937.1|DR692937 EST1083025 Normalized pine embryo li... 79 4e-024
gb|CO370165.1|CO370165 RTK1_65_H06.g1_A029 Roots minus pota... 56 9e-023
gb|CO168808.1|CO168808 NDL1_2_D11.g1_A029 Needles control P... 98 9e-023
gb|DR090030.1|DR090030 RTAL1_12_G03.b1_A029 Roots plus adde... 54 1e-021
gb|DR119823.1|DR119823 RTMG1_25_F06.g2_A029 Roots minus mag... 54 1e-021
gb|BI076998.1|BI076998 NXPV_085_G09_F NXPV (Nsf Xylem Plani... 103 4e-021
>gb|DR050772.1|DR050772 RTBOR1_25_C10.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_25_C10_A029 5', mRNA sequence
Length = 883
Score = 131 bits (281), Expect(4) = 8e-048
Identities = 55/136 (40%), Positives = 79/136 (58%)
Frame = -2 / +2
Query: 1026 AMPNTLVLFHVINATVAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVENTDGVHVGG 847
++P LV++ N + + +S H+ I S + V+++ + AP D NTDG+HV
Sbjct: 200 SVPTALVVYSSSNVHLRDLTFQDSPKIHVEIAQSTYVQVENLQIVAPGDSPNTDGIHVYA 379
Query: 846 SSKISILNSTIGTGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVR 667
S + I N TI TGDDCVSI G + + ++ + CGPG GIS+G LG E VSD+ V
Sbjct: 380 SQHVVIQNCTIATGDDCVSIVTGSSDIQINKLVCGPGHGISIGSLGSGNSEDTVSDVIVN 559
Query: 666 NCVLKNTTNGVRIKSY 619
L T NGVRIK++
Sbjct: 560 GASLTATQNGVRIKTW 607
Score = 47.3 bits (97), Expect(4) = 8e-048
Identities = 20/46 (43%), Positives = 33/46 (71%)
Frame = -2 / +2
Query: 492 SNSSHVSVKDVTFRNITGTSSTPEAISLLCSETQPCSGVSLIDVNV 355
++SS V V +VT+ +ITGTS+T EAI L CS + PC+ + + +++
Sbjct: 746 NHSSAVRVHNVTYIDITGTSATKEAIKLECSGSVPCTKIVMEGISL 883
Score = 42.3 bits (86), Expect(4) = 8e-048
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = -2 / +2
Query: 594 ASHLTFENIRMEEVANPIVIDQYFC 520
A + F+++RM VANPI+IDQY+C
Sbjct: 626 AQGIIFQHVRMTNVANPIIIDQYYC 700
Score = 27.2 bits (53), Expect(4) = 8e-048
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2 / +2
Query: 1131 WIELSHVNNIGITGSGTLDGQG 1066
W+ S V + I+G G +DG G
Sbjct: 83 WLMFSKVQGLTISGGGIIDGTG 148
>gb|DR096226.1|DR096226 STRR1_26_D02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_26_D02_A033 5', mRNA sequence
Length = 802
Score = 118 bits (253), Expect(3) = 1e-040
Identities = 50/124 (40%), Positives = 70/124 (56%)
Frame = -2 / +3
Query: 990 NATVAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVENTDGVHVGGSSKISILNSTIG 811
N + +K +S HI I S + V+++ + AP D NTDG+H+ S + I N TI
Sbjct: 18 NVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTIA 197
Query: 810 TGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVRNCVLKNTTNGVR 631
TGDDC+SI + + + + CGPG GIS+G LG VSD+ V L T NGVR
Sbjct: 198 TGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVR 377
Query: 630 IKSY 619
IK++
Sbjct: 378 IKTW 389
Score = 49.2 bits (101), Expect(3) = 1e-040
Identities = 21/56 (37%), Positives = 36/56 (64%)
Frame = -2 / +3
Query: 522 CPQKVCPGKRSNSSHVSVKDVTFRNITGTSSTPEAISLLCSETQPCSGVSLIDVNV 355
C ++ ++SS V V +VT+ +ITGTS+T EAI L CS + PC+ + + +++
Sbjct: 498 CKKQQMKPCNNHSSAVLVHNVTYTDITGTSATKEAIKLACSGSVPCTEIVMEGISL 665
Score = 38.6 bits (78), Expect(3) = 1e-040
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -2 / +3
Query: 594 ASHLTFENIRMEEVANPIVIDQYFC 520
A + F+++ M V+NPI+IDQY+C
Sbjct: 408 AQRIMFQHVNMINVSNPIIIDQYYC 482
>gb|DR014638.1|DR014638 HEAT1_50_E08.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_50_E08_A029 5', mRNA sequence
Length = 881
Score = 112 bits (240), Expect(3) = 2e-039
Identities = 46/95 (48%), Positives = 59/95 (62%)
Frame = -2 / -2
Query: 903 VNVTAPADVENTDGVHVGGSSKISILNSTIGTGDDCVSIGPGCNGVLVDSITCGPGQGIS 724
+ + AP D NTDG+HV S + I N TI TGDDCVSI G + + ++ + CGPG GIS
Sbjct: 880 LQIVAPGDSPNTDGIHVYASQHVVIQNCTIATGDDCVSIVTGSSDIQINKLVCGPGHGIS 701
Query: 723 VGCLGRYKDEKDVSDITVRNCVLKNTTNGVRIKSY 619
+G LG E VSD+ V L T NGVRIK++
Sbjct: 700 IGSLGSGNSEDTVSDVIVNGASLTATQNGVRIKTW 596
Score = 47.3 bits (97), Expect(3) = 2e-039
Identities = 20/46 (43%), Positives = 33/46 (71%)
Frame = -2 / -2
Query: 492 SNSSHVSVKDVTFRNITGTSSTPEAISLLCSETQPCSGVSLIDVNV 355
++SS V V +VT+ +ITGTS+T EAI L CS + PC+ + + +++
Sbjct: 457 NHSSAVRVHNVTYIDITGTSATKEAIKLECSGSVPCTKIVMEGISL 320
Score = 42.3 bits (86), Expect(3) = 2e-039
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = -2 / -2
Query: 594 ASHLTFENIRMEEVANPIVIDQYFC 520
A + F+++RM VANPI+IDQY+C
Sbjct: 577 AQGIIFQHVRMTNVANPIIIDQYYC 503
>gb|DR068962.1|DR068962 RTDK1_3_H10.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_3_H10_A029 5', mRNA sequence
Length = 794
Score = 111 bits (238), Expect(3) = 3e-039
Identities = 46/97 (47%), Positives = 61/97 (62%)
Frame = -2 / +1
Query: 909 KDVNVTAPADVENTDGVHVGGSSKISILNSTIGTGDDCVSIGPGCNGVLVDSITCGPGQG 730
+++ + A D NTDG+HV S + I N TI TGDDCVSI G +G+ ++ + CGPG G
Sbjct: 1 ENLQIVALGDSPNTDGIHVYASQHVVIQNCTIATGDDCVSIVTGSSGIQINKLVCGPGHG 180
Query: 729 ISVGCLGRYKDEKDVSDITVRNCVLKNTTNGVRIKSY 619
IS+G LG E VSD+ V L T NGVRIK++
Sbjct: 181 ISIGSLGSGDSEDTVSDVIVNGASLTATQNGVRIKTW 291
Score = 47.3 bits (97), Expect(3) = 3e-039
Identities = 20/46 (43%), Positives = 33/46 (71%)
Frame = -2 / +1
Query: 492 SNSSHVSVKDVTFRNITGTSSTPEAISLLCSETQPCSGVSLIDVNV 355
++SS V V +VT+ +ITGTS+T EAI L CS + PC+ + + +++
Sbjct: 430 NHSSAVRVHNVTYIDITGTSATKEAIKLECSGSVPCTKILMEGISL 567
Score = 42.3 bits (86), Expect(3) = 3e-039
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = -2 / +1
Query: 594 ASHLTFENIRMEEVANPIVIDQYFC 520
A + F+++RM VANPI+IDQY+C
Sbjct: 310 AQGIIFQHVRMTNVANPIIIDQYYC 384
>gb|CO197457.1|CO197457 GEO1_6_C03.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_6_C03_A029 5', mRNA sequence
Length = 580
Score = 111 bits (238), Expect(3) = 2e-038
Identities = 46/108 (42%), Positives = 63/108 (58%)
Frame = -2 / +3
Query: 942 INIDNSESITVKDVNVTAPADVENTDGVHVGGSSKISILNSTIGTGDDCVSIGPGCNGVL 763
I I S + V+++ + AP D NTDG+H+ S + I N TI TGDDC+SI + +
Sbjct: 3 IEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTIATGDDCISIVTQSSDIE 182
Query: 762 VDSITCGPGQGISVGCLGRYKDEKDVSDITVRNCVLKNTTNGVRIKSY 619
+ + CGPG GIS+G LG VSD+ V L T NGVRIK++
Sbjct: 183 ISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVRIKTW 326
Score = 48.3 bits (99), Expect(3) = 2e-038
Identities = 21/47 (44%), Positives = 31/47 (65%)
Frame = -2 / +3
Query: 522 CPQKVCPGKRSNSSHVSVKDVTFRNITGTSSTPEAISLLCSETQPCS 382
C ++ ++SS V V +VT+ +ITGTS+T EAI L CS + PC+
Sbjct: 435 CKKQQMKPCNNHSSAVLVHNVTYTDITGTSATKEAIKLACSGSVPCT 575
Score = 38.6 bits (78), Expect(3) = 2e-038
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -2 / +3
Query: 594 ASHLTFENIRMEEVANPIVIDQYFC 520
A + F+++ M V+NPI+IDQY+C
Sbjct: 345 AQRIMFQHVNMINVSNPIIIDQYYC 419
>gb|DR072028.1|DR072028 RTDK1_23_D06.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_23_D06_A029 5', mRNA sequence
Length = 671
Score = 123 bits (264), Expect(3) = 1e-035
Identities = 52/135 (38%), Positives = 75/135 (55%)
Frame = -2 / +3
Query: 1023 MPNTLVLFHVINATVAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVENTDGVHVGGS 844
+P V++ N + +K +S HI I S + V+++ + AP D NTDG+H+ S
Sbjct: 168 IPTAFVVYSSSNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYAS 347
Query: 843 SKISILNSTIGTGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVRN 664
+ I N TI TGDDC+SI + + + + CGPG GIS+G LG VSD+ V
Sbjct: 348 QHVVIQNCTIATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNG 527
Query: 663 CVLKNTTNGVRIKSY 619
L T NGVRIK++
Sbjct: 528 ASLNGTQNGVRIKTW 572
Score = 38.6 bits (78), Expect(3) = 1e-035
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -2 / +3
Query: 594 ASHLTFENIRMEEVANPIVIDQYFC 520
A + F+++ M V+NPI+IDQY+C
Sbjct: 591 AQRIMFQHVNMINVSNPIIIDQYYC 665
Score = 26.7 bits (52), Expect(3) = 1e-035
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2 / +3
Query: 1131 WIELSHVNNIGITGSGTLDGQG 1066
W+ S V + I G G +DG G
Sbjct: 48 WLMFSKVQGLTINGGGIIDGTG 113
>gb|CO370082.1|CO370082 RTK1_65_H06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_65_H06_A029 3', mRNA sequence
Length = 723
Score = 127 bits (272), Expect(2) = 4e-035
Identities = 54/136 (39%), Positives = 79/136 (58%)
Frame = -2 / -2
Query: 1026 AMPNTLVLFHVINATVAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVENTDGVHVGG 847
++P LV++ N + + +S H+ I S + V+++ + AP D NTDG+HV
Sbjct: 557 SVPTALVVYSSSNVHLRDLTFQDSPKIHVEIAQSTYVEVENLQIVAPGDSPNTDGIHVYA 378
Query: 846 SSKISILNSTIGTGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVR 667
S + I N TI TGDDCVSI G + + ++ + CGPG GIS+G LG E VS++ V
Sbjct: 377 SQHVVIQNCTIATGDDCVSIVTGSSDIQINKLVCGPGHGISIGSLGSGDLEDTVSEVIVN 198
Query: 666 NCVLKNTTNGVRIKSY 619
L T NGVRIK++
Sbjct: 197 GASLTATQNGVRIKTW 150
Score = 42.3 bits (86), Expect(2) = 4e-035
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = -2 / -2
Query: 594 ASHLTFENIRMEEVANPIVIDQYFC 520
A + F+++RM VANPI+IDQY+C
Sbjct: 131 AQGIIFQHVRMTNVANPIIIDQYYC 57
>gb|CF665534.1|CF665534 RTCNT1_16_D01.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_16_D01_A029 5', mRNA sequence
Length = 441
Score = 125 bits (268), Expect(2) = 1e-034
Identities = 51/109 (46%), Positives = 68/109 (62%)
Frame = -2 / +3
Query: 945 HINIDNSESITVKDVNVTAPADVENTDGVHVGGSSKISILNSTIGTGDDCVSIGPGCNGV 766
H+ I S + V+++ + AP D NTDG+HV S + I N TI TGDDCVSI G +G+
Sbjct: 3 HVEIAQSTYVQVENLQIVAPGDSPNTDGIHVYASQHVVIQNCTIATGDDCVSIVTGSSGI 182
Query: 765 LVDSITCGPGQGISVGCLGRYKDEKDVSDITVRNCVLKNTTNGVRIKSY 619
++ + CGPG GIS+G LG E VSD+ V L T NGVRIK++
Sbjct: 183 QINKLVCGPGHGISIGSLGSGDSEDTVSDVIVNGASLTATQNGVRIKTW 329
Score = 42.3 bits (86), Expect(2) = 1e-034
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = -2 / +3
Query: 594 ASHLTFENIRMEEVANPIVIDQYFC 520
A + F+++RM VANPI+IDQY+C
Sbjct: 348 AQGIIFQHVRMTNVANPIIIDQYYC 422
>gb|BX252155.1|BX252155 BX252155 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP060E10, mRNA sequence
Length = 693
Score = 95.9 bits (203), Expect(3) = 4e-034
Identities = 43/112 (38%), Positives = 59/112 (52%)
Frame = -2 / +3
Query: 1047 SKTDNVKAMPNTLVLFHVINATVAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVENT 868
+K++ ++ P + N + + NS+ HI I S + V D+ V AP D NT
Sbjct: 357 NKSNPCRSAPTAFTVDLSWNVIIKDLNFQNSQQIHIVISRSIGVQVTDLLVVAPGDSPNT 536
Query: 867 DGVHVGGSSKISILNSTIGTGDDCVSIGPGCNGVLVDSITCGPGQGISVGCL 712
DG+H+ S + I I TGDDC+SI G V V + CGPG GISVG L
Sbjct: 537 DGIHITRSQDVVINGCKIATGDDCISIVSGSANVKVGDVLCGPGHGISVGSL 692
Score = 56.5 bits (117), Expect(3) = 4e-034
Identities = 24/60 (40%), Positives = 31/60 (51%)
Frame = -2 / +3
Query: 1365 DISKLGATSDGKTDCTKAVQDAWTSACEATGSATVVIPKGDYLVGPLNFTGPCKGSNIAI 1186
++ GA DG TD T+A +AW AC + S +V YLV P+ FTGPC I
Sbjct: 12 NVESFGAQGDGITDDTQAFMNAWQMACSLSNSVFLVPEGYVYLVKPITFTGPCNSGGSMI 191
Score = 31.8 bits (63), Expect(3) = 4e-034
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2 / +3
Query: 1134 SWIELSHVNNIGITGSGTLDGQGTAVYSKSKTDN 1033
+W+ S +N + I G G +DG G +++S N
Sbjct: 258 TWLVFSRLNGVTIQGEGVIDGSGQKWWAQSCKTN 359
>gb|CO196845.1|CO196845 GEO1_2_A06.b1_A029 Root gravitropism April 2003 test Pinus taeda cDNA
clone GEO1_2_A06_A029 3', mRNA sequence
Length = 691
Score = 122 bits (261), Expect(2) = 1e-032
Identities = 51/135 (37%), Positives = 75/135 (55%)
Frame = -2 / -2
Query: 1023 MPNTLVLFHVINATVAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVENTDGVHVGGS 844
+P V++ N + +K +S HI I S + V+++ + AP D NTDG+H+ S
Sbjct: 582 IPTAFVVYSSSNVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYAS 403
Query: 843 SKISILNSTIGTGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVRN 664
+ I N TI TGDDC+SI + + + + CGPG GIS+G LG VSD+ V
Sbjct: 402 QHVVIQNCTIATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNG 223
Query: 663 CVLKNTTNGVRIKSY 619
L T NGVRI+++
Sbjct: 222 ASLNGTQNGVRIRTW 178
Score = 38.6 bits (78), Expect(2) = 1e-032
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -2 / -2
Query: 594 ASHLTFENIRMEEVANPIVIDQYFC 520
A + F+++ M V+NPI+IDQY+C
Sbjct: 159 AQRIMFQHVNMINVSNPIIIDQYYC 85
>gb|DR050690.1|DR050690 RTBOR1_25_C10.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_25_C10_A029 3', mRNA sequence
Length = 835
Score = 86.8 bits (183), Expect(3) = 8e-032
Identities = 36/71 (50%), Positives = 45/71 (63%)
Frame = -2 / +2
Query: 831 ILNSTIGTGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVRNCVLK 652
I N TI TGDDCVSI G + + ++ + CGPG GIS+G LG E VSD+ V L
Sbjct: 5 IQNCTIATGDDCVSIVTGSSDIQINKLVCGPGHGISIGSLGSGNSEDTVSDVIVNGASLT 184
Query: 651 NTTNGVRIKSY 619
T NGVRIK++
Sbjct: 185 ATQNGVRIKTW 217
Score = 47.3 bits (97), Expect(3) = 8e-032
Identities = 20/46 (43%), Positives = 33/46 (71%)
Frame = -2 / +2
Query: 492 SNSSHVSVKDVTFRNITGTSSTPEAISLLCSETQPCSGVSLIDVNV 355
++SS V V +VT+ +ITGTS+T EAI L CS + PC+ + + +++
Sbjct: 356 NHSSAVRVHNVTYIDITGTSATKEAIKLECSGSVPCTKIVMEGISL 493
Score = 42.3 bits (86), Expect(3) = 8e-032
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = -2 / +2
Query: 594 ASHLTFENIRMEEVANPIVIDQYFC 520
A + F+++RM VANPI+IDQY+C
Sbjct: 236 AQGIIFQHVRMTNVANPIIIDQYYC 310
>gb|DR057194.1|DR057194 RTNIT1_4_E07.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_4_E07_A029 3', mRNA sequence
Length = 504
Score = 115 bits (246), Expect(2) = 4e-031
Identities = 47/109 (43%), Positives = 64/109 (58%)
Frame = -2 / -2
Query: 945 HINIDNSESITVKDVNVTAPADVENTDGVHVGGSSKISILNSTIGTGDDCVSIGPGCNGV 766
HI I S + V+++ + AP D NTDG+H+ S + I N TI TGDDC+SI + +
Sbjct: 497 HIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTIATGDDCISIVTQSSDI 318
Query: 765 LVDSITCGPGQGISVGCLGRYKDEKDVSDITVRNCVLKNTTNGVRIKSY 619
+ + CGPG GIS+G LG VSD+ V L T NGVRIK++
Sbjct: 317 EISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVRIKTW 171
Score = 40.5 bits (82), Expect(2) = 4e-031
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = -2 / -2
Query: 594 ASHLTFENIRMEEVANPIVIDQYFC 520
A + F+++ M +V+NPI+IDQYFC
Sbjct: 152 AQRIMFQHVNMIKVSNPIIIDQYFC 78
>gb|BX253476.1|BX253476 BX253476 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP083H12 similar to POLYGALACTURONASE
PRECURSOR, mRNA sequence
Length = 596
Score = 126 bits (269), Expect(2) = 4e-030
Identities = 50/136 (36%), Positives = 78/136 (57%)
Frame = -2 / +1
Query: 1026 AMPNTLVLFHVINATVAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVENTDGVHVGG 847
++P +++ N + +K +S H+ I S + V+++ + AP D NTDG+H+
Sbjct: 127 SVPTAFMVYSSSNVHLRDLKFRDSPKIHVEIAMSTHVQVENLEIVAPGDSPNTDGIHIYA 306
Query: 846 SSKISILNSTIGTGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVR 667
S + I N TI TGDDC+SI + + + + CGPG GIS+G LG+ E VSD+ V
Sbjct: 307 SQHVVIQNCTIATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGKADSEDTVSDVFVN 486
Query: 666 NCVLKNTTNGVRIKSY 619
L T NG+RIK++
Sbjct: 487 GASLNGTQNGLRIKTW 534
Score = 26.7 bits (52), Expect(2) = 4e-030
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2 / +1
Query: 1131 WIELSHVNNIGITGSGTLDGQG 1066
W+ S V + I G G +DG G
Sbjct: 10 WLMFSKVQGLTINGGGIIDGTG 75
>gb|BI397545.1|BI397545 NXPV_100_F08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_100_F08 5' similar to Arabidopsis
thaliana sequence At1g80170 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 465
Score = 118 bits (253), Expect(2) = 7e-030
Identities = 50/124 (40%), Positives = 70/124 (56%)
Frame = -2 / +2
Query: 990 NATVAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVENTDGVHVGGSSKISILNSTIG 811
N + +K +S HI I S + V+++ + AP D NTDG+H+ S + I N TI
Sbjct: 5 NVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTIA 184
Query: 810 TGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVRNCVLKNTTNGVR 631
TGDDC+SI + + + + CGPG GIS+G LG VSD+ V L T NGVR
Sbjct: 185 TGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVR 364
Query: 630 IKSY 619
IK++
Sbjct: 365 IKTW 376
Score = 33.1 bits (66), Expect(2) = 7e-030
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2 / +2
Query: 594 ASHLTFENIRMEEVANPIVIDQY 526
A + F+++ M V+NPI+IDQY
Sbjct: 395 AQRIMFQHVNMINVSNPIIIDQY 463
>gb|BX250521.1|BX250521 BX250521 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP038A08 similar to POLYGALACTURONASE
PRECURSOR, mRNA sequence
Length = 662
Score = 112 bits (239), Expect(3) = 9e-030
Identities = 45/127 (35%), Positives = 70/127 (55%)
Frame = -2 / +2
Query: 1026 AMPNTLVLFHVINATVAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVENTDGVHVGG 847
++P +++ N + +K +S H+ I S + V+++ + AP D NTDG+H+
Sbjct: 281 SVPTAFMVYSSSNVHLRDLKFRDSPKIHVEIAMSTHVQVENLEIVAPGDSPNTDGIHIYA 460
Query: 846 SSKISILNSTIGTGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVR 667
S + I N TI TGDDC+SI + + + + CGPG GIS+G LG+ E VSD+ V
Sbjct: 461 SQHVVIQNCTIATGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGQADSEDTVSDVFVN 640
Query: 666 NCVLKNT 646
L T
Sbjct: 641 GASLNGT 661
Score = 30.4 bits (60), Expect(3) = 9e-030
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2 / +2
Query: 1242 YLVGPLNFTGPCKGSNIAIQ 1183
YLV P+ F GPCK ++ Q
Sbjct: 41 YLVKPITFNGPCKSVHLTAQ 100
Score = 26.7 bits (52), Expect(3) = 9e-030
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2 / +2
Query: 1131 WIELSHVNNIGITGSGTLDGQG 1066
W+ S V + I G G +DG G
Sbjct: 164 WLMFSKVQGLTINGGGIIDGTG 229
>gb|CO172772.1|CO172772 NDL1_31_G01.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_31_G01_A029 5', mRNA sequence
Length = 695
Score = 115 bits (246), Expect(3) = 6e-029
Identities = 49/145 (33%), Positives = 81/145 (55%)
Frame = -2 / +1
Query: 1053 SKSKTDNVKAMPNTLVLFHVINATVAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVE 874
+++++ ++P LV+ N + + + H+ I+ S + V+++ + AP D
Sbjct: 223 NRNRSHICPSVPTALVVNSSSNVHLKNLTFHVNPKIHVEINESTYVEVENLKIVAPGDSP 402
Query: 873 NTDGVHVGGSSKISILNSTIGTGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDE 694
NTDG+HV S + I N I TGD CVSIG + + ++ + C PGQGIS+G LG E
Sbjct: 403 NTDGIHVYDSQHVVIQNCKIATGDYCVSIGTESSSIQINKLVCEPGQGISIGSLGSGNSE 582
Query: 693 KDVSDITVRNCVLKNTTNGVRIKSY 619
VSD+ V L + NGVR++++
Sbjct: 583 DTVSDVIVNGASLTASQNGVRVETW 657
Score = 28.6 bits (56), Expect(3) = 6e-029
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2 / +1
Query: 1245 DYLVGPLNFTGPC 1207
+Y V P+NFTGPC
Sbjct: 34 NYSVKPINFTGPC 72
Score = 22.6 bits (43), Expect(3) = 6e-029
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -2 / +1
Query: 1131 WIELSHVNNIGITGSGTLDGQ 1069
W+ S V + I G G +DG+
Sbjct: 154 WLMFSKVQVLTIGGGGIIDGR 216
>gb|DR057265.1|DR057265 RTNIT1_4_E07.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_4_E07_A029 5', mRNA sequence
Length = 650
Score = 111 bits (236), Expect(3) = 6e-029
Identities = 45/108 (41%), Positives = 63/108 (58%)
Frame = -2 / +2
Query: 942 INIDNSESITVKDVNVTAPADVENTDGVHVGGSSKISILNSTIGTGDDCVSIGPGCNGVL 763
+ I S + V+++ + AP D NTDG+H+ S + I N TI TGDDC+SI + +
Sbjct: 326 LKIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTIATGDDCISIVTQSSDIE 505
Query: 762 VDSITCGPGQGISVGCLGRYKDEKDVSDITVRNCVLKNTTNGVRIKSY 619
+ + CGPG GIS+G LG VSD+ V L T NGVRIK++
Sbjct: 506 ISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVRIKTW 649
Score = 34.1 bits (68), Expect(3) = 6e-029
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2 / +1
Query: 1242 YLVGPLNFTGPCKGSNIAIQ 1183
YLV P+NF GPCK ++ Q
Sbjct: 1 YLVKPINFNGPCKSDHLTAQ 60
Score = 26.7 bits (52), Expect(3) = 6e-029
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2 / +1
Query: 1131 WIELSHVNNIGITGSGTLDGQG 1066
W+ S V + I G G +DG G
Sbjct: 124 WLMFSKVQGLTINGGGIIDGTG 189
>gb|DR022672.1|DR022672 STRS1_52_E06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_52_E06_A034 5', mRNA sequence
Length = 566
Score = 124 bits (266), Expect = 1e-027
Identities = 52/142 (36%), Positives = 78/142 (54%)
Frame = -2 / +2
Query: 1044 KTDNVKAMPNTLVLFHVINATVAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVENTD 865
KT+ ++ P + N + + + NS+ HI + + + V AP NTD
Sbjct: 77 KTNPCRSAPTAITFELCNNLRMMNLTVENSQQMHIKLRRCVGVVADHLKVLAPGHSPNTD 256
Query: 864 GVHVGGSSKISILNSTIGTGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDV 685
G+HV S + I N+ IGTGDDC+SI + ++I CGPG GIS+G LG + V
Sbjct: 257 GIHVSASKDVVIKNTIIGTGDDCISIVSDSFNICTENIACGPGHGISIGSLGEGSAKAQV 436
Query: 684 SDITVRNCVLKNTTNGVRIKSY 619
+D+ V L+NTTNG+RIK++
Sbjct: 437 ADVMVHGAFLENTTNGLRIKTW 502
>gb|DR099658.1|DR099658 STRR1_57_E02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_57_E02_A033 3', mRNA sequence
Length = 768
Score = 119 bits (254), Expect = 6e-026
Identities = 47/109 (43%), Positives = 68/109 (62%)
Frame = -2 / +2
Query: 945 HINIDNSESITVKDVNVTAPADVENTDGVHVGGSSKISILNSTIGTGDDCVSIGPGCNGV 766
H+ I+ S + V+++ + AP D NTDG+HV S + I N TI TGDDCVSIG + +
Sbjct: 32 HVEINQSTYVEVENLKIVAPGDSPNTDGIHVYDSQHVVIQNCTIATGDDCVSIGTESSSI 211
Query: 765 LVDSITCGPGQGISVGCLGRYKDEKDVSDITVRNCVLKNTTNGVRIKSY 619
++ + C PGQGIS+G LG E VSD+ V L + NGVR++++
Sbjct: 212 QINKLVCEPGQGISIGSLGSGNSEDTVSDVIVNGASLTASQNGVRVETW 358
>gb|DR099702.1|DR099702 STRR1_57_E02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_57_E02_A033 5', mRNA sequence
Length = 546
Score = 119 bits (254), Expect = 6e-026
Identities = 47/109 (43%), Positives = 68/109 (62%)
Frame = -2 / +2
Query: 945 HINIDNSESITVKDVNVTAPADVENTDGVHVGGSSKISILNSTIGTGDDCVSIGPGCNGV 766
H+ I+ S + V+++ + AP D NTDG+HV S + I N TI TGDDCVSIG + +
Sbjct: 5 HVEINQSTYVEVENLKIVAPGDSPNTDGIHVYDSQHVVIQNCTIATGDDCVSIGTESSSI 184
Query: 765 LVDSITCGPGQGISVGCLGRYKDEKDVSDITVRNCVLKNTTNGVRIKSY 619
++ + C PGQGIS+G LG E VSD+ V L + NGVR++++
Sbjct: 185 QINKLVCEPGQGISIGSLGSGNSEDTVSDVIVNGASLTASQNGVRVETW 331
>gb|BG673824.1|BG673824 NXPV_075_E12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_075_E12 5' similar to Arabidopsis
thaliana sequence At1g70500 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 471
Score = 118 bits (253), Expect = 8e-026
Identities = 50/124 (40%), Positives = 70/124 (56%)
Frame = -2 / +2
Query: 990 NATVAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVENTDGVHVGGSSKISILNSTIG 811
N + +K +S HI I S + V+++ + AP D NTDG+H+ S + I N TI
Sbjct: 5 NVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTIA 184
Query: 810 TGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVRNCVLKNTTNGVR 631
TGDDC+SI + + + + CGPG GIS+G LG VSD+ V L T NGVR
Sbjct: 185 TGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVR 364
Query: 630 IKSY 619
IK++
Sbjct: 365 IKTW 376
>gb|BQ695682.1|BQ695682 NXPV_031_D11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_031_D11 5' similar to Arabidopsis
thaliana sequence At1g70500 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 523
Score = 118 bits (253), Expect = 8e-026
Identities = 50/124 (40%), Positives = 70/124 (56%)
Frame = -2 / +2
Query: 990 NATVAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVENTDGVHVGGSSKISILNSTIG 811
N + +K +S HI I S + V+++ + AP D NTDG+H+ S + I N TI
Sbjct: 5 NVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTIA 184
Query: 810 TGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVRNCVLKNTTNGVR 631
TGDDC+SI + + + + CGPG GIS+G LG VSD+ V L T NGVR
Sbjct: 185 TGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVR 364
Query: 630 IKSY 619
IK++
Sbjct: 365 IKTW 376
>gb|BQ695692.1|BQ695692 NXPV_031_E12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_031_E12 5' similar to Arabidopsis
thaliana sequence At1g70500 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 522
Score = 118 bits (253), Expect = 8e-026
Identities = 50/124 (40%), Positives = 70/124 (56%)
Frame = -2 / +2
Query: 990 NATVAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVENTDGVHVGGSSKISILNSTIG 811
N + +K +S HI I S + V+++ + AP D NTDG+H+ S + I N TI
Sbjct: 5 NVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTIA 184
Query: 810 TGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVRNCVLKNTTNGVR 631
TGDDC+SI + + + + CGPG GIS+G LG VSD+ V L T NGVR
Sbjct: 185 TGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVR 364
Query: 630 IKSY 619
IK++
Sbjct: 365 IKTW 376
>gb|DR682452.1|DR682452 EST1072527 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA992, mRNA sequence
Length = 841
Score = 116 bits (248), Expect = 4e-025
Identities = 50/135 (37%), Positives = 76/135 (56%)
Frame = -2 / -2
Query: 1026 AMPNTLVLFHVINATVAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVENTDGVHVGG 847
++P LV+ N + + + H+ I+ S + V+++ + AP D NTDG+ V
Sbjct: 777 SVPTALVVNSSSNVHLKNLTFHVNPKIHVEINQSTYVEVENLKIVAPGDSPNTDGIRVYD 598
Query: 846 SSKISILNSTIGTGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVR 667
S + I N TI TGDDCVSIG + + ++ + C PGQGIS+G LG E VSD+ V
Sbjct: 597 SQHVVIQNCTIATGDDCVSIGTESSTIQINKLVCEPGQGISIGSLGSGNSEDTVSDVIVN 418
Query: 666 NCVLKNTTNGVRIKS 622
L + NGVR+++
Sbjct: 417 GASLTASQNGVRVQT 373
>gb|BI202850.1|BI202850 NXPV_091_D07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_091_D07 5' similar to Arabidopsis
thaliana sequence At1g70500 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 537
Score = 115 bits (245), Expect = 1e-024
Identities = 49/144 (34%), Positives = 80/144 (55%)
Frame = -2 / +3
Query: 1053 SKSKTDNVKAMPNTLVLFHVINATVAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVE 874
+++++ ++P LV+ N + + + H+ I+ S + V+++ + AP D
Sbjct: 33 NRNRSQICPSVPTALVVNSSSNVRLKNLTFHVNPKIHVEINQSTYVEVENLKIVAPGDSP 212
Query: 873 NTDGVHVGGSSKISILNSTIGTGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDE 694
NTDG+ V S + I N TI TGDDCVSIG + + ++ + C PGQGIS+G LG E
Sbjct: 213 NTDGIRVYDSQHVVIQNCTIATGDDCVSIGTESSTIQINKLVCEPGQGISIGSLGSGNSE 392
Query: 693 KDVSDITVRNCVLKNTTNGVRIKS 622
VSD+ L + NGVR+++
Sbjct: 393 DTVSDVIXXGASLTASQNGVRVQT 464
>gb|BQ695778.1|BQ695778 NXPV_032_E11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_032_E11 5' similar to Arabidopsis
thaliana sequence At1g70500 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 423
Score = 113 bits (242), Expect = 3e-024
Identities = 48/123 (39%), Positives = 67/123 (54%)
Frame = -2 / +2
Query: 990 NATVAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVENTDGVHVGGSSKISILNSTIG 811
N + +K +S HI I S + V+++ + AP D NTDG+H+ S + I N TI
Sbjct: 5 NVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTIA 184
Query: 810 TGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVRNCVLKNTTNGVR 631
TGDDC+SI + + + + CGPG GIS+G LG VSD+ V T N VR
Sbjct: 185 TGDDCISIVTQSSDIEISKLVCGPGHGISIGSLGSXXSNDTVSDVFVNGAXXNGTQNXVR 364
Query: 630 IKS 622
IK+
Sbjct: 365 IKT 373
>gb|DR092421.1|DR092421 STRR1_1_G02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_1_G02_A033 3', mRNA sequence
Length = 860
Score = 113 bits (242), Expect = 3e-024
Identities = 46/108 (42%), Positives = 66/108 (61%)
Frame = -2 / +2
Query: 945 HINIDNSESITVKDVNVTAPADVENTDGVHVGGSSKISILNSTIGTGDDCVSIGPGCNGV 766
H+ I+ S + V+++ + AP D NTDG+ V S + I N TI TGDDCVSIG + +
Sbjct: 56 HVEINQSTYVEVENLKIVAPGDSPNTDGIRVYDSQHVVIQNCTIATGDDCVSIGTESSTI 235
Query: 765 LVDSITCGPGQGISVGCLGRYKDEKDVSDITVRNCVLKNTTNGVRIKS 622
++ + C PGQGIS+G LG E VSD+ V L + NGVR+++
Sbjct: 236 QINKLVCEPGQGISIGSLGSGNSEDTVSDVIVNGASLTASQNGVRVQT 379
>gb|DR097874.1|DR097874 STRR1_37_D04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_37_D04_A033 5', mRNA sequence
Length = 695
Score = 113 bits (242), Expect = 3e-024
Identities = 46/108 (42%), Positives = 66/108 (61%)
Frame = -2 / +3
Query: 945 HINIDNSESITVKDVNVTAPADVENTDGVHVGGSSKISILNSTIGTGDDCVSIGPGCNGV 766
H+ I+ S + V+++ + AP D NTDG+ V S + I N TI TGDDCVSIG + +
Sbjct: 96 HVEINQSTYVEVENLKIVAPGDSPNTDGIRVYDSQHVVIQNCTIATGDDCVSIGTESSTI 275
Query: 765 LVDSITCGPGQGISVGCLGRYKDEKDVSDITVRNCVLKNTTNGVRIKS 622
++ + C PGQGIS+G LG E VSD+ V L + NGVR+++
Sbjct: 276 QINKLVCEPGQGISIGSLGSGNSEDTVSDVIVNGASLTASQNGVRVQT 419
>gb|DR692937.1|DR692937 EST1083025 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADS13 3' end, mRNA sequence
Length = 757
Score = 78.5 bits (165), Expect(3) = 4e-024
Identities = 29/62 (46%), Positives = 43/62 (69%)
Frame = -2 / +1
Query: 1368 FDISKLGATSDGKTDCTKAVQDAWTSACEATGSATVVIPKGDYLVGPLNFTGPCKGSNIA 1189
F++ + GA +DG TD KA AW +AC +T ++ V IP+G++L+GP++F GPC NI
Sbjct: 220 FNVQQYGAKADGITDNRKAFLAAWVAACSSTHTSVVYIPEGNFLLGPVSFEGPCNNDNIM 399
Query: 1188 IQ 1183
IQ
Sbjct: 400 IQ 405
Score = 37.7 bits (76), Expect(3) = 4e-024
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -2 / +1
Query: 1131 WIELSHVNNIGITGSGTLDGQGTAVYSKSKTDNVKAMPNTLVLFHVINATV 979
W+ ++V+++ + G G LDGQG + ++ T V T +LF N TV
Sbjct: 469 WLNFNYVDHLTVEGMGRLDGQGASWWNSECTKYVCHGGPTTLLFSNANNTV 621
Score = 34.1 bits (68), Expect(3) = 4e-024
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = -2 / +3
Query: 948 FHINIDNSESITVKDVNVTAPADVENTDGVHVG 850
F +I + +++ +++ + AP D NTDG+H+G
Sbjct: 654 FPHSIRSCKNVNAEELTMEAPGDSPNTDGIHMG 752
>gb|CO370165.1|CO370165 RTK1_65_H06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_65_H06_A029 5', mRNA sequence
Length = 728
Score = 56.1 bits (116), Expect(3) = 9e-023
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = -2 / -1
Query: 780 GCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVRNCVLKNTTNGVRIKSY 619
G + + ++ + CGPG GIS+G LG E VS++ V L T NGVRIK++
Sbjct: 725 GSSDIQINKLVCGPGHGISMGSLGSGDLEDTVSEVIVNGASLTATQNGVRIKTW 564
Score = 47.3 bits (97), Expect(3) = 9e-023
Identities = 20/46 (43%), Positives = 33/46 (71%)
Frame = -2 / -1
Query: 492 SNSSHVSVKDVTFRNITGTSSTPEAISLLCSETQPCSGVSLIDVNV 355
++SS V V +VT+ +ITGTS+T EAI L CS + PC+ + + +++
Sbjct: 425 NHSSAVRVHNVTYIDITGTSATKEAIKLECSGSVPCTKIVMEGISL 288
Score = 42.3 bits (86), Expect(3) = 9e-023
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = -2 / -1
Query: 594 ASHLTFENIRMEEVANPIVIDQYFC 520
A + F+++RM VANPI+IDQY+C
Sbjct: 545 AQGIIFQHVRMTNVANPIIIDQYYC 471
>gb|CO168808.1|CO168808 NDL1_2_D11.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_2_D11_A029 5', mRNA sequence
Length = 728
Score = 97.7 bits (207), Expect(3) = 9e-023
Identities = 40/84 (47%), Positives = 53/84 (63%)
Frame = -2 / +3
Query: 873 NTDGVHVGGSSKISILNSTIGTGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDE 694
NTDG+HV S + I N TI TGDDCVSIG + + ++ + C PGQGIS+G LG E
Sbjct: 294 NTDGIHVYDSQHVVIQNCTIATGDDCVSIGTESSTIQINKLVCEPGQGISIGSLGSGNSE 473
Query: 693 KDVSDITVRNCVLKNTTNGVRIKS 622
VSD+ V L + NGVR+++
Sbjct: 474 DTVSDVIVNGASLTASQNGVRVET 545
Score = 28.6 bits (56), Expect(3) = 9e-023
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2 / +2
Query: 1245 DYLVGPLNFTGPC 1207
+Y V P+NFTGPC
Sbjct: 74 NYSVKPINFTGPC 112
Score = 24.9 bits (48), Expect(3) = 9e-023
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -2 / +2
Query: 1131 WIELSHVNNIGITGSGTLDGQ 1069
W+ S V + I+G G +DG+
Sbjct: 182 WLMFSKVQVLNISGGGIIDGR 244
>gb|DR090030.1|DR090030 RTAL1_12_G03.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_12_G03_A029 3', mRNA sequence
Length = 672
Score = 53.8 bits (111), Expect(3) = 1e-021
Identities = 22/43 (51%), Positives = 26/43 (60%)
Frame = -2 / -3
Query: 747 CGPGQGISVGCLGRYKDEKDVSDITVRNCVLKNTTNGVRIKSY 619
CGPG GIS+G LG VSD+ V L T NGVRIK++
Sbjct: 670 CGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVRIKTW 542
Score = 49.2 bits (101), Expect(3) = 1e-021
Identities = 21/56 (37%), Positives = 36/56 (64%)
Frame = -2 / -3
Query: 522 CPQKVCPGKRSNSSHVSVKDVTFRNITGTSSTPEAISLLCSETQPCSGVSLIDVNV 355
C ++ ++SS V V +VT+ +ITGTS+T EAI L CS + PC+ + + +++
Sbjct: 433 CKKQQMKPCNNDSSAVLVHNVTYTDITGTSATKEAIKLACSGSVPCTEIVMEGISL 266
Score = 38.6 bits (78), Expect(3) = 1e-021
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -2 / -3
Query: 594 ASHLTFENIRMEEVANPIVIDQYFC 520
A + F+++ M V+NPI+IDQY+C
Sbjct: 523 AQRIMFQHVNMINVSNPIIIDQYYC 449
>gb|DR119823.1|DR119823 RTMG1_25_F06.g2_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_25_F06_A029 5', mRNA sequence
Length = 589
Score = 53.8 bits (111), Expect(3) = 1e-021
Identities = 22/43 (51%), Positives = 26/43 (60%)
Frame = -2 / +3
Query: 747 CGPGQGISVGCLGRYKDEKDVSDITVRNCVLKNTTNGVRIKSY 619
CGPG GIS+G LG VSD+ V L T NGVRIK++
Sbjct: 3 CGPGHGISIGSLGSGDSNDTVSDVFVNGASLNGTQNGVRIKTW 131
Score = 49.2 bits (101), Expect(3) = 1e-021
Identities = 21/56 (37%), Positives = 36/56 (64%)
Frame = -2 / +3
Query: 522 CPQKVCPGKRSNSSHVSVKDVTFRNITGTSSTPEAISLLCSETQPCSGVSLIDVNV 355
C ++ ++SS V V +VT+ +ITGTS+T EAI L CS + PC+ + + +++
Sbjct: 240 CKKQQMKPCNNDSSAVLVHNVTYTDITGTSATKEAIKLACSGSVPCTEIVMEGISL 407
Score = 38.6 bits (78), Expect(3) = 1e-021
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -2 / +3
Query: 594 ASHLTFENIRMEEVANPIVIDQYFC 520
A + F+++ M V+NPI+IDQY+C
Sbjct: 150 AQRIMFQHVNMINVSNPIIIDQYYC 224
>gb|BI076998.1|BI076998 NXPV_085_G09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_085_G09 5' similar to Arabidopsis
thaliana sequence At1g70500 putative polygalacturonase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 373
Score = 103 bits (219), Expect = 4e-021
Identities = 46/123 (37%), Positives = 64/123 (52%)
Frame = -2 / +2
Query: 990 NATVAGIKLLNSKFFHINIDNSESITVKDVNVTAPADVENTDGVHVGGSSKISILNSTIG 811
N + +K +S HI I S + V+++ + AP D NTDG+H+ S + I N TI
Sbjct: 5 NVHLRDLKFRDSPKSHIEIAMSTHVQVENLEIVAPGDSPNTDGIHIYASQHVVIQNCTIA 184
Query: 810 TGDDCVSIGPGCNGVLVDSITCGPGQGISVGCLGRYKDEKDVSDITVRNCVLKNTTNGVR 631
TGDDC+SI + + + + CGPG GIS LG V + V L T N VR
Sbjct: 185 TGDDCISIVTQSSDIEISKLVCGPGHGISXXXLGSGDSNDTVXXVFVXGASLNXTQNXVR 364
Query: 630 IKS 622
IK+
Sbjct: 365 IKT 373
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 676,724,626
Number of Sequences: 355925
Number of extensions: 9152034
Number of successful extensions: 64705
Number of sequences better than 1.0e-020: 41
length of database: 72,425,745
effective HSP length: 54
effective length of database: 53,205,795
effective search space used: 24208636725
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)