TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3665460.2.1
         (649 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BD267264.1|  Compositions isolated from plant cells and ...   145   1e-042

>dbj|BD267264.1| Compositions isolated from plant cells and utilization of the same
           in modifying plant cell signal transduction
          Length = 551

 Score =  145 bits (311), Expect(2) = 1e-042
 Identities = 56/94 (59%), Positives = 70/94 (74%)
 Frame = +2 / +3

                                                                       
Query: 2   LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
           LN++I LN+ +S+C+P EIG L  L V D SF  + G LPD+IG M +LEQLDVAHN L 
Sbjct: 123 LNEIIFLNNNLSACLPSEIGLLKNLTVFDASFNKLVGPLPDSIGQMDSLEQLDVAHNMLT 302

                                             
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVP 283
           G+IP+S+C LP+L NFTYSYNFF GE   CL +P
Sbjct: 303 GKIPQSICALPNLDNFTYSYNFFTGEAPNCLALP 404




 Score = 47.8 bits (98), Expect(2) = 1e-042
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = +2 / +3

                                              
Query: 290 DDRQNCIAGRPDQRPGEECISFLHQPRVRCDAHGC 394
           DD++NCI  RP QR  ++C +FL +P V C A  C
Sbjct: 423 DDKRNCIPSRPLQRTLQQCSAFLSRPGVNCSASSC 527



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 242,216,760
Number of Sequences: 355925
Number of extensions: 3088732
Number of successful extensions: 84696
Number of sequences better than 1.0e-020: 1
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 8788576135
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)