TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3588987.2.1
(487 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX249672.1|BX249672 BX249672 Pinus pinaster differenciat... 178 2e-044
gb|CF668610.1|CF668610 RTCNT1_37_C10.g1_A029 Root control P... 178 2e-044
gb|CO198335.1|CO198335 GEO1_13_A07.b1_A029 Root gravitropis... 178 2e-044
gb|CO364924.1|CO364924 RTK1_22_D04.g1_A029 Roots minus pota... 178 2e-044
gb|CO366719.1|CO366719 RTK1_29_D03.g1_A029 Roots minus pota... 178 2e-044
gb|CO366730.1|CO366730 RTK1_29_E08.g1_A029 Roots minus pota... 178 2e-044
gb|CO367067.1|CO367067 RTK1_32_A04.b1_A029 Roots minus pota... 178 2e-044
gb|CO368370.1|CO368370 RTK1_40_E12.b1_A029 Roots minus pota... 178 2e-044
gb|CX713793.1|CX713793 RTPQ1_13_E07.b1_A032 Roots treated w... 178 2e-044
gb|CX713829.1|CX713829 RTPQ1_13_E07.g1_A032 Roots treated w... 178 2e-044
gb|DR013906.1|DR013906 HEAT1_22_F08.b1_A029 Root at 37 C fo... 178 2e-044
gb|DR023409.1|DR023409 STRS1_57_H08.b1_A034 Shoot tip pitch... 178 2e-044
gb|DR048419.1|DR048419 RTBOR1_8_G01.g2_A029 Roots plus adde... 178 2e-044
gb|DR048427.1|DR048427 RTBOR1_8_H01.g2_A029 Roots plus adde... 178 2e-044
gb|DR050529.1|DR050529 RTBOR1_24_D01.b1_A029 Roots plus add... 178 2e-044
gb|DR052071.1|DR052071 RTCA1_2_F02.b1_A029 Roots minus calc... 178 2e-044
gb|DR052149.1|DR052149 RTCA1_2_F02.g1_A029 Roots minus calc... 178 2e-044
gb|DR054592.1|DR054592 RTCA1_18_G04.b1_A029 Roots minus cal... 178 2e-044
gb|DR093661.1|DR093661 STRR1_9_D09.g1_A033 Stem Response Re... 178 2e-044
gb|DR110260.1|DR110260 RTS1_9_G11.g1_A029 Roots minus sulfu... 178 2e-044
gb|DR117365.1|DR117365 RTMG1_6_B12.g1_A029 Roots minus magn... 178 2e-044
gb|DR119408.1|DR119408 RTMG1_23_C07.b1_A029 Roots minus mag... 178 2e-044
gb|DR119489.1|DR119489 RTMG1_23_C07.g1_A029 Roots minus mag... 178 2e-044
gb|DR161632.1|DR161632 RTFE1_13_B02.b1_A029 Roots minus iro... 178 2e-044
gb|DR745554.1|DR745554 RTCU1_30_B10.g1_A029 Roots plus adde... 178 2e-044
gb|BQ107923.1|BQ107923 NXLV102_F01_F NXLV (Nsf Xylem Late w... 160 8e-039
gb|DR162312.1|DR162312 RTFE1_17_C03.b1_A029 Roots minus iro... 127 5e-029
gb|BF518290.1|BF518290 NXSI_037_D11_F NXSI (Nsf Xylem Side ... 120 8e-027
gb|BQ702019.1|BQ702019 NXSI_123_E01_F NXSI (Nsf Xylem Side ... 120 8e-027
gb|DR054676.1|DR054676 RTCA1_18_G04.g1_A029 Roots minus cal... 111 4e-024
>gb|BX249672.1|BX249672 BX249672 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP026H09 similar to HEAT SHOCK PROTEIN STI1,
mRNA sequence
Length = 672
Score = 178 bits (384), Expect = 2e-044
Identities = 74/103 (71%), Positives = 89/103 (86%)
Frame = -1 / +3
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLK NQELL+GVRRC+EQI K +RG++S EE+KERQ KAMQDP+IQ+IL+D
Sbjct: 93 LETYQEGLKLDENNQELLEGVRRCIEQINKTNRGDISPEEMKERQAKAMQDPDIQHILSD 272
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+Q+L D QENP+AAQ HLKNP VM KIQKLVSAGIVQ++*
Sbjct: 273 PVMRQILMDFQENPKAAQDHLKNPEVMHKIQKLVSAGIVQVR* 401
>gb|CF668610.1|CF668610 RTCNT1_37_C10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_37_C10_A029 5', mRNA sequence
Length = 830
Score = 178 bits (384), Expect = 2e-044
Identities = 74/103 (71%), Positives = 89/103 (86%)
Frame = -1 / -3
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLK NQELL+GVRRC+EQI K +RG++S EE+KERQ KAMQDP+IQ+IL+D
Sbjct: 654 LETYQEGLKLDENNQELLEGVRRCIEQINKTNRGDISPEEMKERQAKAMQDPDIQHILSD 475
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+Q+L D QENP+AAQ HLKNP VM KIQKLVSAGIVQ++*
Sbjct: 474 PVMRQILMDFQENPKAAQDHLKNPEVMHKIQKLVSAGIVQVR* 346
>gb|CO198335.1|CO198335 GEO1_13_A07.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_13_A07_A029 3', mRNA sequence
Length = 681
Score = 178 bits (384), Expect = 2e-044
Identities = 74/103 (71%), Positives = 89/103 (86%)
Frame = -1 / +3
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLK NQELL+GVRRC+EQI K +RG++S EE+KERQ KAMQDP+IQ+IL+D
Sbjct: 99 LETYQEGLKLDENNQELLEGVRRCIEQINKTNRGDISPEEMKERQAKAMQDPDIQHILSD 278
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+Q+L D QENP+AAQ HLKNP VM KIQKLVSAGIVQ++*
Sbjct: 279 PVMRQILMDFQENPKAAQDHLKNPEVMHKIQKLVSAGIVQVR* 407
>gb|CO364924.1|CO364924 RTK1_22_D04.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_22_D04_A029 5', mRNA sequence
Length = 843
Score = 178 bits (384), Expect = 2e-044
Identities = 74/103 (71%), Positives = 89/103 (86%)
Frame = -1 / -1
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLK NQELL+GVRRC+EQI K +RG++S EE+KERQ KAMQDP+IQ+IL+D
Sbjct: 588 LETYQEGLKLDENNQELLEGVRRCIEQINKTNRGDISPEEMKERQAKAMQDPDIQHILSD 409
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+Q+L D QENP+AAQ HLKNP VM KIQKLVSAGIVQ++*
Sbjct: 408 PVMRQILMDFQENPKAAQDHLKNPEVMHKIQKLVSAGIVQVR* 280
>gb|CO366719.1|CO366719 RTK1_29_D03.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_29_D03_A029 5', mRNA sequence
Length = 823
Score = 178 bits (384), Expect = 2e-044
Identities = 74/103 (71%), Positives = 89/103 (86%)
Frame = -1 / -2
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLK NQELL+GVRRC+EQI K +RG++S EE+KERQ KAMQDP+IQ+IL+D
Sbjct: 594 LETYQEGLKLDENNQELLEGVRRCIEQINKTNRGDISPEEMKERQAKAMQDPDIQHILSD 415
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+Q+L D QENP+AAQ HLKNP VM KIQKLVSAGIVQ++*
Sbjct: 414 PVMRQILMDFQENPKAAQDHLKNPEVMHKIQKLVSAGIVQVR* 286
>gb|CO366730.1|CO366730 RTK1_29_E08.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_29_E08_A029 5', mRNA sequence
Length = 832
Score = 178 bits (384), Expect = 2e-044
Identities = 74/103 (71%), Positives = 89/103 (86%)
Frame = -1 / +3
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLK NQELL+GVRRC+EQI K +RG++S EE+KERQ KAMQDP+IQ+IL+D
Sbjct: 426 LETYQEGLKLDENNQELLEGVRRCIEQINKTNRGDISPEEMKERQAKAMQDPDIQHILSD 605
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+Q+L D QENP+AAQ HLKNP VM KIQKLVSAGIVQ++*
Sbjct: 606 PVMRQILMDFQENPKAAQDHLKNPEVMHKIQKLVSAGIVQVR* 734
>gb|CO367067.1|CO367067 RTK1_32_A04.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_32_A04_A029 3', mRNA sequence
Length = 863
Score = 178 bits (384), Expect = 2e-044
Identities = 74/103 (71%), Positives = 89/103 (86%)
Frame = -1 / +2
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLK NQELL+GVRRC+EQI K +RG++S EE+KERQ KAMQDP+IQ+IL+D
Sbjct: 209 LETYQEGLKLDENNQELLEGVRRCIEQINKTNRGDISPEEMKERQAKAMQDPDIQHILSD 388
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+Q+L D QENP+AAQ HLKNP VM KIQKLVSAGIVQ++*
Sbjct: 389 PVMRQILMDFQENPKAAQDHLKNPEVMHKIQKLVSAGIVQVR* 517
>gb|CO368370.1|CO368370 RTK1_40_E12.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_40_E12_A029 3', mRNA sequence
Length = 816
Score = 178 bits (384), Expect = 2e-044
Identities = 74/103 (71%), Positives = 89/103 (86%)
Frame = -1 / +2
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLK NQELL+GVRRC+EQI K +RG++S EE+KERQ KAMQDP+IQ+IL+D
Sbjct: 182 LETYQEGLKLDENNQELLEGVRRCIEQINKTNRGDISPEEMKERQAKAMQDPDIQHILSD 361
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+Q+L D QENP+AAQ HLKNP VM KIQKLVSAGIVQ++*
Sbjct: 362 PVMRQILMDFQENPKAAQDHLKNPEVMHKIQKLVSAGIVQVR* 490
>gb|CX713793.1|CX713793 RTPQ1_13_E07.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_13_E07_A032 3', mRNA sequence
Length = 714
Score = 178 bits (384), Expect = 2e-044
Identities = 74/103 (71%), Positives = 89/103 (86%)
Frame = -1 / +1
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLK NQELL+GVRRC+EQI K +RG++S EE+KERQ KAMQDP+IQ+IL+D
Sbjct: 49 LETYQEGLKLDENNQELLEGVRRCIEQINKTNRGDISPEEMKERQAKAMQDPDIQHILSD 228
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+Q+L D QENP+AAQ HLKNP VM KIQKLVSAGIVQ++*
Sbjct: 229 PVMRQILMDFQENPKAAQDHLKNPEVMHKIQKLVSAGIVQVR* 357
>gb|CX713829.1|CX713829 RTPQ1_13_E07.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_13_E07_A032 5', mRNA sequence
Length = 667
Score = 178 bits (384), Expect = 2e-044
Identities = 74/103 (71%), Positives = 89/103 (86%)
Frame = -1 / +1
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLK NQELL+GVRRC+EQI K +RG++S EE+KERQ KAMQDP+IQ+IL+D
Sbjct: 250 LETYQEGLKLDENNQELLEGVRRCIEQINKTNRGDISPEEMKERQAKAMQDPDIQHILSD 429
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+Q+L D QENP+AAQ HLKNP VM KIQKLVSAGIVQ++*
Sbjct: 430 PVMRQILMDFQENPKAAQDHLKNPEVMHKIQKLVSAGIVQVR* 558
>gb|DR013906.1|DR013906 HEAT1_22_F08.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_22_F08_A029 3', mRNA sequence
Length = 708
Score = 178 bits (384), Expect = 2e-044
Identities = 74/103 (71%), Positives = 89/103 (86%)
Frame = -1 / +2
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLK NQELL+GVRRC+EQI K +RG++S EE+KERQ KAMQDP+IQ+IL+D
Sbjct: 176 LETYQEGLKLDENNQELLEGVRRCIEQINKTNRGDISPEEMKERQAKAMQDPDIQHILSD 355
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+Q+L D QENP+AAQ HLKNP VM KIQKLVSAGIVQ++*
Sbjct: 356 PVMRQILMDFQENPKAAQDHLKNPEVMHKIQKLVSAGIVQVR* 484
>gb|DR023409.1|DR023409 STRS1_57_H08.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_57_H08_A034 3', mRNA sequence
Length = 827
Score = 178 bits (384), Expect = 2e-044
Identities = 74/103 (71%), Positives = 89/103 (86%)
Frame = -1 / +2
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLK NQELL+GVRRC+EQI K +RG++S EE+KERQ KAMQDP+IQ+IL+D
Sbjct: 167 LETYQEGLKLDENNQELLEGVRRCIEQINKTNRGDISPEEMKERQAKAMQDPDIQHILSD 346
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+Q+L D QENP+AAQ HLKNP VM KIQKLVSAGIVQ++*
Sbjct: 347 PVMRQILMDFQENPKAAQDHLKNPEVMHKIQKLVSAGIVQVR* 475
>gb|DR048419.1|DR048419 RTBOR1_8_G01.g2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_8_G01_A029 5', mRNA sequence
Length = 725
Score = 178 bits (384), Expect = 2e-044
Identities = 74/103 (71%), Positives = 89/103 (86%)
Frame = -1 / -2
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLK NQELL+GVRRC+EQI K +RG++S EE+KERQ KAMQDP+IQ+IL+D
Sbjct: 601 LETYQEGLKLDENNQELLEGVRRCIEQINKTNRGDISPEEMKERQAKAMQDPDIQHILSD 422
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+Q+L D QENP+AAQ HLKNP VM KIQKLVSAGIVQ++*
Sbjct: 421 PVMRQILMDFQENPKAAQDHLKNPEVMHKIQKLVSAGIVQVR* 293
>gb|DR048427.1|DR048427 RTBOR1_8_H01.g2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_8_H01_A029 5', mRNA sequence
Length = 742
Score = 178 bits (384), Expect = 2e-044
Identities = 74/103 (71%), Positives = 89/103 (86%)
Frame = -1 / -2
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLK NQELL+GVRRC+EQI K +RG++S EE+KERQ KAMQDP+IQ+IL+D
Sbjct: 615 LETYQEGLKLDENNQELLEGVRRCIEQINKTNRGDISPEEMKERQAKAMQDPDIQHILSD 436
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+Q+L D QENP+AAQ HLKNP VM KIQKLVSAGIVQ++*
Sbjct: 435 PVMRQILMDFQENPKAAQDHLKNPEVMHKIQKLVSAGIVQVR* 307
>gb|DR050529.1|DR050529 RTBOR1_24_D01.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_24_D01_A029 3', mRNA sequence
Length = 845
Score = 178 bits (384), Expect = 2e-044
Identities = 74/103 (71%), Positives = 89/103 (86%)
Frame = -1 / +1
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLK NQELL+GVRRC+EQI K +RG++S EE+KERQ KAMQDP+IQ+IL+D
Sbjct: 283 LETYQEGLKLDENNQELLEGVRRCIEQINKTNRGDISPEEMKERQAKAMQDPDIQHILSD 462
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+Q+L D QENP+AAQ HLKNP VM KIQKLVSAGIVQ++*
Sbjct: 463 PVMRQILMDFQENPKAAQDHLKNPEVMHKIQKLVSAGIVQVR* 591
>gb|DR052071.1|DR052071 RTCA1_2_F02.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_2_F02_A029 3', mRNA sequence
Length = 829
Score = 178 bits (384), Expect = 2e-044
Identities = 74/103 (71%), Positives = 89/103 (86%)
Frame = -1 / +3
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLK NQELL+GVRRC+EQI K +RG++S EE+KERQ KAMQDP+IQ+IL+D
Sbjct: 99 LETYQEGLKLDENNQELLEGVRRCIEQINKTNRGDISPEEMKERQAKAMQDPDIQHILSD 278
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+Q+L D QENP+AAQ HLKNP VM KIQKLVSAGIVQ++*
Sbjct: 279 PVMRQILMDFQENPKAAQDHLKNPEVMHKIQKLVSAGIVQVR* 407
>gb|DR052149.1|DR052149 RTCA1_2_F02.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_2_F02_A029 5', mRNA sequence
Length = 913
Score = 178 bits (384), Expect = 2e-044
Identities = 74/103 (71%), Positives = 89/103 (86%)
Frame = -1 / +3
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLK NQELL+GVRRC+EQI K +RG++S EE+KERQ KAMQDP+IQ+IL+D
Sbjct: 294 LETYQEGLKLDENNQELLEGVRRCIEQINKTNRGDISPEEMKERQAKAMQDPDIQHILSD 473
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+Q+L D QENP+AAQ HLKNP VM KIQKLVSAGIVQ++*
Sbjct: 474 PVMRQILMDFQENPKAAQDHLKNPEVMHKIQKLVSAGIVQVR* 602
>gb|DR054592.1|DR054592 RTCA1_18_G04.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_18_G04_A029 3', mRNA sequence
Length = 624
Score = 178 bits (384), Expect = 2e-044
Identities = 74/103 (71%), Positives = 89/103 (86%)
Frame = -1 / +2
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLK NQELL+GVRRC+EQI K +RG++S EE+KERQ KAMQDP+IQ+IL+D
Sbjct: 101 LETYQEGLKLDENNQELLEGVRRCIEQINKTNRGDISPEEMKERQAKAMQDPDIQHILSD 280
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+Q+L D QENP+AAQ HLKNP VM KIQKLVSAGIVQ++*
Sbjct: 281 PVMRQILMDFQENPKAAQDHLKNPEVMHKIQKLVSAGIVQVR* 409
>gb|DR093661.1|DR093661 STRR1_9_D09.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_9_D09_A033 5', mRNA sequence
Length = 903
Score = 178 bits (384), Expect = 2e-044
Identities = 74/103 (71%), Positives = 89/103 (86%)
Frame = -1 / -2
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLK NQELL+GVRRC+EQI K +RG++S EE+KERQ KAMQDP+IQ+IL+D
Sbjct: 602 LETYQEGLKLDENNQELLEGVRRCIEQINKTNRGDISPEEMKERQAKAMQDPDIQHILSD 423
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+Q+L D QENP+AAQ HLKNP VM KIQKLVSAGIVQ++*
Sbjct: 422 PVMRQILMDFQENPKAAQDHLKNPEVMHKIQKLVSAGIVQVR* 294
>gb|DR110260.1|DR110260 RTS1_9_G11.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_9_G11_A029 5', mRNA sequence
Length = 841
Score = 178 bits (384), Expect = 2e-044
Identities = 74/103 (71%), Positives = 89/103 (86%)
Frame = -1 / +3
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLK NQELL+GVRRC+EQI K +RG++S EE+KERQ KAMQDP+IQ+IL+D
Sbjct: 216 LETYQEGLKLDENNQELLEGVRRCIEQINKTNRGDISPEEMKERQAKAMQDPDIQHILSD 395
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+Q+L D QENP+AAQ HLKNP VM KIQKLVSAGIVQ++*
Sbjct: 396 PVMRQILMDFQENPKAAQDHLKNPEVMHKIQKLVSAGIVQVR* 524
>gb|DR117365.1|DR117365 RTMG1_6_B12.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_6_B12_A029 5', mRNA sequence
Length = 861
Score = 178 bits (384), Expect = 2e-044
Identities = 74/103 (71%), Positives = 89/103 (86%)
Frame = -1 / +2
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLK NQELL+GVRRC+EQI K +RG++S EE+KERQ KAMQDP+IQ+IL+D
Sbjct: 299 LETYQEGLKLDENNQELLEGVRRCIEQINKTNRGDISPEEMKERQAKAMQDPDIQHILSD 478
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+Q+L D QENP+AAQ HLKNP VM KIQKLVSAGIVQ++*
Sbjct: 479 PVMRQILMDFQENPKAAQDHLKNPEVMHKIQKLVSAGIVQVR* 607
>gb|DR119408.1|DR119408 RTMG1_23_C07.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_23_C07_A029 3', mRNA sequence
Length = 759
Score = 178 bits (384), Expect = 2e-044
Identities = 74/103 (71%), Positives = 89/103 (86%)
Frame = -1 / +3
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLK NQELL+GVRRC+EQI K +RG++S EE+KERQ KAMQDP+IQ+IL+D
Sbjct: 111 LETYQEGLKLDENNQELLEGVRRCIEQINKTNRGDISPEEMKERQAKAMQDPDIQHILSD 290
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+Q+L D QENP+AAQ HLKNP VM KIQKLVSAGIVQ++*
Sbjct: 291 PVMRQILMDFQENPKAAQDHLKNPEVMHKIQKLVSAGIVQVR* 419
>gb|DR119489.1|DR119489 RTMG1_23_C07.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_23_C07_A029 5', mRNA sequence
Length = 679
Score = 178 bits (384), Expect = 2e-044
Identities = 74/103 (71%), Positives = 89/103 (86%)
Frame = -1 / +3
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLK NQELL+GVRRC+EQI K +RG++S EE+KERQ KAMQDP+IQ+IL+D
Sbjct: 285 LETYQEGLKLDENNQELLEGVRRCIEQINKTNRGDISPEEMKERQAKAMQDPDIQHILSD 464
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+Q+L D QENP+AAQ HLKNP VM KIQKLVSAGIVQ++*
Sbjct: 465 PVMRQILMDFQENPKAAQDHLKNPEVMHKIQKLVSAGIVQVR* 593
>gb|DR161632.1|DR161632 RTFE1_13_B02.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_13_B02_A029 3', mRNA sequence
Length = 639
Score = 178 bits (384), Expect = 2e-044
Identities = 74/103 (71%), Positives = 89/103 (86%)
Frame = -1 / +2
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLK NQELL+GVRRC+EQI K +RG++S EE+KERQ KAMQDP+IQ+IL+D
Sbjct: 128 LETYQEGLKLDENNQELLEGVRRCIEQINKTNRGDISPEEMKERQAKAMQDPDIQHILSD 307
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+Q+L D QENP+AAQ HLKNP VM KIQKLVSAGIVQ++*
Sbjct: 308 PVMRQILMDFQENPKAAQDHLKNPEVMHKIQKLVSAGIVQVR* 436
>gb|DR745554.1|DR745554 RTCU1_30_B10.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_30_B10_A029 5', mRNA sequence
Length = 684
Score = 178 bits (384), Expect = 2e-044
Identities = 74/103 (71%), Positives = 89/103 (86%)
Frame = -1 / -2
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLK NQELL+GVRRC+EQI K +RG++S EE+KERQ KAMQDP+IQ+IL+D
Sbjct: 476 LETYQEGLKLDENNQELLEGVRRCIEQINKTNRGDISPEEMKERQAKAMQDPDIQHILSD 297
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+Q+L D QENP+AAQ HLKNP VM KIQKLVSAGIVQ++*
Sbjct: 296 PVMRQILMDFQENPKAAQDHLKNPEVMHKIQKLVSAGIVQVR* 168
>gb|BQ107923.1|BQ107923 NXLV102_F01_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV102_F01 5' similar to Arabidopsis thaliana
sequence At4g12400 stress-induced protein sti1 -like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 570
Score = 160 bits (343), Expect = 8e-039
Identities = 66/100 (66%), Positives = 80/100 (80%)
Frame = -1 / +1
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLK NQELL+GVRRC+EQI K +RG++S EE+KERQ KA+QDP+IQ+IL+D
Sbjct: 268 LETYQEGLKLDENNQELLEGVRRCIEQINKTTRGDISPEEMKERQAKAIQDPDIQHILSD 447
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQ 188
P+M+Q+L D Q NP+AAQ HL NP M K LVSAGIVQ
Sbjct: 448 PVMRQILMDFQXNPKAAQDHLXNPXXMHKXXXLVSAGIVQ 567
>gb|DR162312.1|DR162312 RTFE1_17_C03.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_17_C03_A029 3', mRNA sequence
Length = 499
Score = 127 bits (272), Expect = 5e-029
Identities = 52/72 (72%), Positives = 65/72 (90%)
Frame = -1 / +2
Query: 394 SRGELSEEELKERQNKAMQDPEIQNILTDPIMQQVLTDLQENPRAAQAHLKNPGVMQKIQ 215
+RG++S EE+KERQ KAMQDP+IQ+IL+DP+M+Q+L D QENP+AAQ HLKNP VM KIQ
Sbjct: 2 NRGDISPEEMKERQAKAMQDPDIQHILSDPVMRQILMDFQENPKAAQDHLKNPEVMHKIQ 181
Query: 214 KLVSAGIVQMK* 179
KLVSAGIVQ++*
Sbjct: 182 KLVSAGIVQVR* 217
>gb|BF518290.1|BF518290 NXSI_037_D11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_037_D11 5' similar to Arabidopsis thaliana
sequence At4g12400 stress-induced protein sti1 -like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 529
Score = 120 bits (256), Expect = 8e-027
Identities = 50/67 (74%), Positives = 60/67 (89%)
Frame = -1 / +3
Query: 379 SEEELKERQNKAMQDPEIQNILTDPIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSA 200
S EE+KERQ KAMQDP+IQ+IL+DP+M+Q+L D QENP+AAQ HLKNP VM KIQKLVSA
Sbjct: 3 SPEEMKERQAKAMQDPDIQHILSDPVMRQILMDFQENPKAAQDHLKNPEVMHKIQKLVSA 182
Query: 199 GIVQMK* 179
GIVQ++*
Sbjct: 183 GIVQVR* 203
>gb|BQ702019.1|BQ702019 NXSI_123_E01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_123_E01 5' similar to Arabidopsis thaliana
sequence At4g12400 stress-induced protein sti1 -like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 425
Score = 120 bits (256), Expect = 8e-027
Identities = 50/67 (74%), Positives = 60/67 (89%)
Frame = -1 / +3
Query: 379 SEEELKERQNKAMQDPEIQNILTDPIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSA 200
S EE+KERQ KAMQDP+IQ+IL+DP+M+Q+L D QENP+AAQ HLKNP VM KIQKLVSA
Sbjct: 3 SPEEMKERQAKAMQDPDIQHILSDPVMRQILMDFQENPKAAQDHLKNPEVMHKIQKLVSA 182
Query: 199 GIVQMK* 179
GIVQ++*
Sbjct: 183 GIVQVR* 203
>gb|DR054676.1|DR054676 RTCA1_18_G04.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_18_G04_A029 5', mRNA sequence
Length = 706
Score = 111 bits (236), Expect = 4e-024
Identities = 44/64 (68%), Positives = 55/64 (85%)
Frame = -1 / +1
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLK NQELL+GVRRC+EQI K +RG++S EE+KERQ KAMQDP+IQ+IL+D
Sbjct: 514 LETYQEGLKLDENNQELLEGVRRCIEQINKTNRGDISPEEMKERQAKAMQDPDIQHILSD 693
Query: 307 PIMQ 296
P+M+
Sbjct: 694 PVMR 705
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 240,607,876
Number of Sequences: 355925
Number of extensions: 3123558
Number of successful extensions: 51017
Number of sequences better than 1.0e-020: 33
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 5970092700
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)