TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3438088.2.1
(615 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX648273.1|CX648273 COLD1_27_D03.g1_A029 Root cold Pinus... 159 2e-044
gb|CO172739.1|CO172739 NDL1_31_C08.g1_A029 Needles control ... 159 2e-044
gb|DR096991.1|DR096991 STRR1_31_E11.g1_A033 Stem Response R... 159 2e-044
gb|DR078499.1|DR078499 RTFEPL1_5_C10.b1_A029 Roots plus add... 159 2e-044
gb|DR169132.1|DR169132 RTPHOS1_30_F09.b1_A029 Roots minus p... 159 2e-044
gb|DR385816.1|DR385816 RTHG1_11_C03.b1_A029 Roots plus adde... 159 2e-044
gb|DR096719.1|DR096719 STRR1_29_G07.g1_A033 Stem Response R... 159 2e-044
gb|CX652902.1|CX652902 COLD1_62_E09.b1_A029 Root cold Pinus... 159 2e-044
gb|BQ654431.1|BQ654431 NXRV080_B12_F NXRV (Nsf Xylem Root w... 159 2e-044
gb|CV033821.1|CV033821 RTNACL1_36_G06.g1_A029 Roots plus ad... 153 1e-042
gb|DR078575.1|DR078575 RTFEPL1_5_C10.g1_A029 Roots plus add... 152 2e-042
gb|BX680640.1|BX680640 BX680640 RS Pinus pinaster cDNA clon... 160 5e-042
gb|DR744307.1|DR744307 RTCU1_21_D02.g1_A029 Roots plus adde... 159 1e-041
gb|CO361699.1|CO361699 NDL2_6_B04.g1_A029 Needles control 2... 159 1e-041
gb|BG625807.1|BG625807 NXPV_066_C10_F NXPV (Nsf Xylem Plani... 159 1e-041
gb|BQ698529.1|BQ698529 NXPV_071_A11_F NXPV (Nsf Xylem Plani... 159 1e-041
gb|AW290720.1|AW290720 NXNV046B09F Nsf Xylem Normal wood Ve... 159 1e-041
gb|CD027383.1|CD027383 NXNV046B09 Nsf Xylem Normal wood Ver... 159 1e-041
gb|BX255589.1|BX255589 BX255589 Pinus pinaster differenciat... 160 3e-041
gb|DR020418.1|DR020418 STRS1_36_G05.g1_A034 Shoot tip pitch... 148 5e-041
gb|DR051556.1|DR051556 RTBOR1_30_H04.g1_A029 Roots plus add... 148 5e-041
gb|DR164313.1|DR164313 RTFE1_48_E03.b1_A029 Roots minus iro... 146 2e-040
gb|BV079723.1| Pp_Korrigan Pinus pinaster megagametophytes ... 158 3e-038
gb|CF667382.1|CF667382 RTCNT1_29_H05.g1_A029 Root control P... 146 1e-037
gb|CF479877.1|CF479877 RTWW3_12_D09.g1_A022 Well-watered lo... 155 4e-037
gb|BF010621.1|BF010621 NXCI_087_A08_F NXCI (Nsf Xylem Compr... 154 5e-037
gb|CV032797.1|CV032797 RTNACL1_18_H11.b1_A029 Roots plus ad... 142 2e-035
gb|BX255006.1|BX255006 BX255006 Pinus pinaster differenciat... 127 3e-034
gb|BQ699769.1|BQ699769 NXRV128_G04_F NXRV (Nsf Xylem Root w... 144 5e-034
gb|BX682244.2|BX682244 BX682244 Pinus pinaster differenciat... 121 3e-030
gb|CV033733.1|CV033733 RTNACL1_36_G06.b1_A029 Roots plus ad... 108 2e-029
gb|DR096912.1|DR096912 STRR1_31_E11.b1_A033 Stem Response R... 108 2e-029
gb|CF389328.1|CF389328 RTDR2_9_B11.g1_A021 Loblolly pine ro... 113 5e-028
gb|CO361628.1|CO361628 NDL2_6_B04.b1_A029 Needles control 2... 103 8e-028
gb|DR744237.1|DR744237 RTCU1_21_D02.b1_A029 Roots plus adde... 106 6e-026
gb|AI812676.1|AI812676 17G4 Pine Lambda Zap Xylem library P... 103 1e-025
gb|DR096648.1|DR096648 STRR1_29_G07.b1_A033 Stem Response R... 103 2e-025
gb|CF479037.1|CF479037 RTWW3_21_G11.g1_A022 Well-watered lo... 114 5e-025
gb|BQ695579.1|BQ695579 NXPV_030_B08_F NXPV (Nsf Xylem Plani... 103 4e-024
gb|BQ700793.1|BQ700793 NXRV111_D08_F NXRV (Nsf Xylem Root w... 63 3e-023
gb|CX648196.1|CX648196 COLD1_27_D03.b1_A029 Root cold Pinus... 103 3e-023
gb|BQ702675.1|BQ702675 NXSI_131_C04_F NXSI (Nsf Xylem Side ... 80 6e-021
>gb|CX648273.1|CX648273 COLD1_27_D03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_27_D03_A029 5', mRNA sequence
Length = 830
Score = 159 bits (342), Expect(3) = 2e-044
Identities = 56/77 (72%), Positives = 64/77 (83%)
Frame = -3 / +2
Query: 613 NPLKMSYVVGFGKRYPRHVHHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGP 434
NP+KMSY+VG+G YP+HVHHRGASIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGP
Sbjct: 65 NPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGP 244
Query: 433 DRHDGFKDARRNYNYTE 383
D+ D F D R NYNYTE
Sbjct: 245 DKRDMFHDVRTNYNYTE 295
Score = 135 bits (290), Expect = 2e-031
Identities = 67/105 (63%), Positives = 71/105 (67%)
Frame = +3 / -3
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 378 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 199
Query: 480 LASLHFHPPLQP**TPFLGIEAPRW*TCLG*RFPNPTT*LIFKGF 614
S HFHPPLQ F G++APR TCLG* P PT *LIF GF
Sbjct: 198 GLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WLPYPTR*LIFIGF 64
Score = 30.4 bits (60), Expect(3) = 2e-044
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +2
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 359 GGIDKNTMFSAV 394
Score = 27.6 bits (54), Expect(3) = 2e-044
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2 / +1
Query: 305 EHHVLCSTAHVPFASAAAGSMETV 234
E++V CS+ HVP +S +E++
Sbjct: 373 EYNVFCSSTHVPNSSPTTSPLESL 444
>gb|CO172739.1|CO172739 NDL1_31_C08.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_31_C08_A029 5', mRNA sequence
Length = 816
Score = 159 bits (342), Expect(3) = 2e-044
Identities = 56/77 (72%), Positives = 64/77 (83%)
Frame = -3 / +3
Query: 613 NPLKMSYVVGFGKRYPRHVHHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGP 434
NP+KMSY+VG+G YP+HVHHRGASIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGP
Sbjct: 27 NPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGP 206
Query: 433 DRHDGFKDARRNYNYTE 383
D+ D F D R NYNYTE
Sbjct: 207 DKRDMFHDVRTNYNYTE 257
Score = 135 bits (290), Expect = 2e-031
Identities = 67/105 (63%), Positives = 71/105 (67%)
Frame = +3 / -3
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 340 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 161
Query: 480 LASLHFHPPLQP**TPFLGIEAPRW*TCLG*RFPNPTT*LIFKGF 614
S HFHPPLQ F G++APR TCLG* P PT *LIF GF
Sbjct: 160 GLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WLPYPTR*LIFIGF 26
Score = 30.4 bits (60), Expect(3) = 2e-044
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +3
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 321 GGIDKNTMFSAV 356
Score = 27.6 bits (54), Expect(3) = 2e-044
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2 / +2
Query: 305 EHHVLCSTAHVPFASAAAGSMETV 234
E++V CS+ HVP +S +E++
Sbjct: 335 EYNVFCSSTHVPNSSPTTSPLESL 406
>gb|DR096991.1|DR096991 STRR1_31_E11.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_31_E11_A033 5', mRNA sequence
Length = 796
Score = 159 bits (342), Expect(3) = 2e-044
Identities = 56/77 (72%), Positives = 64/77 (83%)
Frame = -3 / +2
Query: 613 NPLKMSYVVGFGKRYPRHVHHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGP 434
NP+KMSY+VG+G YP+HVHHRGASIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGP
Sbjct: 230 NPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGP 409
Query: 433 DRHDGFKDARRNYNYTE 383
D+ D F D R NYNYTE
Sbjct: 410 DKRDMFHDVRTNYNYTE 460
Score = 136 bits (292), Expect = 1e-031
Identities = 67/105 (63%), Positives = 71/105 (67%)
Frame = +3 / -2
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK TNAAT PALPASV SV*L* +R S N S SGPATMAP + G G
Sbjct: 543 VFLSIPPVSPPDKETNAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITFGLGL 364
Query: 480 LASLHFHPPLQP**TPFLGIEAPRW*TCLG*RFPNPTT*LIFKGF 614
S HFHPPLQ F G++APR TCLG* P PT *LIF GF
Sbjct: 363 GLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WLPYPTR*LIFIGF 229
Score = 30.4 bits (60), Expect(3) = 2e-044
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +2
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 524 GGIDKNTMFSAV 559
Score = 27.6 bits (54), Expect(3) = 2e-044
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2 / +1
Query: 305 EHHVLCSTAHVPFASAAAGSMETV 234
E++V CS+ HVP +S +E++
Sbjct: 538 EYNVFCSSTHVPNSSPTTSPLESL 609
>gb|DR078499.1|DR078499 RTFEPL1_5_C10.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_5_C10_A029 3', mRNA sequence
Length = 779
Score = 159 bits (342), Expect(3) = 2e-044
Identities = 56/77 (72%), Positives = 64/77 (83%)
Frame = -3 / -2
Query: 613 NPLKMSYVVGFGKRYPRHVHHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGP 434
NP+KMSY+VG+G YP+HVHHRGASIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGP
Sbjct: 565 NPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGP 386
Query: 433 DRHDGFKDARRNYNYTE 383
D+ D F D R NYNYTE
Sbjct: 385 DKRDMFHDVRTNYNYTE 335
Score = 135 bits (290), Expect = 2e-031
Identities = 67/105 (63%), Positives = 71/105 (67%)
Frame = +3 / +3
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 252 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 431
Query: 480 LASLHFHPPLQP**TPFLGIEAPRW*TCLG*RFPNPTT*LIFKGF 614
S HFHPPLQ F G++APR TCLG* P PT *LIF GF
Sbjct: 432 GLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WLPYPTR*LIFIGF 566
Score = 30.4 bits (60), Expect(3) = 2e-044
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / -2
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 271 GGIDKNTMFSAV 236
Score = 27.6 bits (54), Expect(3) = 2e-044
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2 / -1
Query: 305 EHHVLCSTAHVPFASAAAGSMETV 234
E++V CS+ HVP +S +E++
Sbjct: 257 EYNVFCSSTHVPNSSPTTSPLESL 186
>gb|DR169132.1|DR169132 RTPHOS1_30_F09.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_30_F09_A029 3', mRNA sequence
Length = 765
Score = 159 bits (342), Expect(3) = 2e-044
Identities = 56/77 (72%), Positives = 64/77 (83%)
Frame = -3 / -2
Query: 613 NPLKMSYVVGFGKRYPRHVHHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGP 434
NP+KMSY+VG+G YP+HVHHRGASIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGP
Sbjct: 623 NPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGP 444
Query: 433 DRHDGFKDARRNYNYTE 383
D+ D F D R NYNYTE
Sbjct: 443 DKRDMFHDVRTNYNYTE 393
Score = 135 bits (290), Expect = 2e-031
Identities = 67/105 (63%), Positives = 71/105 (67%)
Frame = +3 / +1
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 310 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 489
Query: 480 LASLHFHPPLQP**TPFLGIEAPRW*TCLG*RFPNPTT*LIFKGF 614
S HFHPPLQ F G++APR TCLG* P PT *LIF GF
Sbjct: 490 GLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WLPYPTR*LIFIGF 624
Score = 30.4 bits (60), Expect(3) = 2e-044
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / -2
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 329 GGIDKNTMFSAV 294
Score = 27.6 bits (54), Expect(3) = 2e-044
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2 / -1
Query: 305 EHHVLCSTAHVPFASAAAGSMETV 234
E++V CS+ HVP +S +E++
Sbjct: 315 EYNVFCSSTHVPNSSPTTSPLESL 244
>gb|DR385816.1|DR385816 RTHG1_11_C03.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_11_C03_A029 3', mRNA sequence
Length = 754
Score = 159 bits (342), Expect(3) = 2e-044
Identities = 56/77 (72%), Positives = 64/77 (83%)
Frame = -3 / -3
Query: 613 NPLKMSYVVGFGKRYPRHVHHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGP 434
NP+KMSY+VG+G YP+HVHHRGASIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGP
Sbjct: 737 NPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGP 558
Query: 433 DRHDGFKDARRNYNYTE 383
D+ D F D R NYNYTE
Sbjct: 557 DKRDMFHDVRTNYNYTE 507
Score = 135 bits (290), Expect = 2e-031
Identities = 67/105 (63%), Positives = 71/105 (67%)
Frame = +3 / +1
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 424 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 603
Query: 480 LASLHFHPPLQP**TPFLGIEAPRW*TCLG*RFPNPTT*LIFKGF 614
S HFHPPLQ F G++APR TCLG* P PT *LIF GF
Sbjct: 604 GLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WLPYPTR*LIFIGF 738
Score = 30.4 bits (60), Expect(3) = 2e-044
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / -3
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 443 GGIDKNTMFSAV 408
Score = 27.6 bits (54), Expect(3) = 2e-044
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2 / -2
Query: 305 EHHVLCSTAHVPFASAAAGSMETV 234
E++V CS+ HVP +S +E++
Sbjct: 429 EYNVFCSSTHVPNSSPTTSPLESL 358
>gb|DR096719.1|DR096719 STRR1_29_G07.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_29_G07_A033 5', mRNA sequence
Length = 747
Score = 159 bits (342), Expect(3) = 2e-044
Identities = 56/77 (72%), Positives = 64/77 (83%)
Frame = -3 / +3
Query: 613 NPLKMSYVVGFGKRYPRHVHHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGP 434
NP+KMSY+VG+G YP+HVHHRGASIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGP
Sbjct: 45 NPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGP 224
Query: 433 DRHDGFKDARRNYNYTE 383
D+ D F D R NYNYTE
Sbjct: 225 DKRDMFHDVRTNYNYTE 275
Score = 135 bits (290), Expect = 2e-031
Identities = 67/105 (63%), Positives = 71/105 (67%)
Frame = +3 / -3
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 358 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 179
Query: 480 LASLHFHPPLQP**TPFLGIEAPRW*TCLG*RFPNPTT*LIFKGF 614
S HFHPPLQ F G++APR TCLG* P PT *LIF GF
Sbjct: 178 GLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WLPYPTR*LIFIGF 44
Score = 30.4 bits (60), Expect(3) = 2e-044
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +3
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 339 GGIDKNTMFSAV 374
Score = 27.6 bits (54), Expect(3) = 2e-044
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2 / +2
Query: 305 EHHVLCSTAHVPFASAAAGSMETV 234
E++V CS+ HVP +S +E++
Sbjct: 353 EYNVFCSSTHVPNSSPTTSPLESL 424
>gb|CX652902.1|CX652902 COLD1_62_E09.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_E09_A029 3', mRNA sequence
Length = 717
Score = 159 bits (342), Expect(3) = 2e-044
Identities = 56/77 (72%), Positives = 64/77 (83%)
Frame = -3 / -2
Query: 613 NPLKMSYVVGFGKRYPRHVHHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGP 434
NP+KMSY+VG+G YP+HVHHRGASIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGP
Sbjct: 527 NPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGP 348
Query: 433 DRHDGFKDARRNYNYTE 383
D+ D F D R NYNYTE
Sbjct: 347 DKRDMFHDVRTNYNYTE 297
Score = 135 bits (290), Expect = 2e-031
Identities = 67/105 (63%), Positives = 71/105 (67%)
Frame = +3 / +1
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 214 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 393
Query: 480 LASLHFHPPLQP**TPFLGIEAPRW*TCLG*RFPNPTT*LIFKGF 614
S HFHPPLQ F G++APR TCLG* P PT *LIF GF
Sbjct: 394 GLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WLPYPTR*LIFIGF 528
Score = 30.4 bits (60), Expect(3) = 2e-044
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / -2
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 233 GGIDKNTMFSAV 198
Score = 27.6 bits (54), Expect(3) = 2e-044
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2 / -1
Query: 305 EHHVLCSTAHVPFASAAAGSMETV 234
E++V CS+ HVP +S +E++
Sbjct: 219 EYNVFCSSTHVPNSSPTTSPLESL 148
>gb|BQ654431.1|BQ654431 NXRV080_B12_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV080_B12 5' similar to Arabidopsis thaliana
sequence At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 561
Score = 159 bits (342), Expect(3) = 2e-044
Identities = 56/77 (72%), Positives = 64/77 (83%)
Frame = -3 / +3
Query: 613 NPLKMSYVVGFGKRYPRHVHHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGP 434
NP+KMSY+VG+G YP+HVHHRGASIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGP
Sbjct: 75 NPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGP 254
Query: 433 DRHDGFKDARRNYNYTE 383
D+ D F D R NYNYTE
Sbjct: 255 DKRDMFHDVRTNYNYTE 305
Score = 135 bits (290), Expect = 2e-031
Identities = 67/105 (63%), Positives = 71/105 (67%)
Frame = +3 / -3
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 388 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 209
Query: 480 LASLHFHPPLQP**TPFLGIEAPRW*TCLG*RFPNPTT*LIFKGF 614
S HFHPPLQ F G++APR TCLG* P PT *LIF GF
Sbjct: 208 GLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WLPYPTR*LIFIGF 74
Score = 30.4 bits (60), Expect(3) = 2e-044
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +3
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 369 GGIDKNTMFSAV 404
Score = 27.6 bits (54), Expect(3) = 2e-044
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2 / +2
Query: 305 EHHVLCSTAHVPFASAAAGSMETV 234
E++V CS+ HVP +S +E++
Sbjct: 383 EYNVFCSSTHVPNSSPTTSPLESL 454
>gb|CV033821.1|CV033821 RTNACL1_36_G06.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_36_G06_A029 5', mRNA sequence
Length = 711
Score = 153 bits (329), Expect(3) = 1e-042
Identities = 54/75 (72%), Positives = 62/75 (82%)
Frame = -3 / +3
Query: 607 LKMSYVVGFGKRYPRHVHHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGPDR 428
+KMSY+VG+G YP+HVHHRGASIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGPD+
Sbjct: 6 MKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDK 185
Query: 427 HDGFKDARRNYNYTE 383
D F D R NYNYTE
Sbjct: 186 RDMFHDVRTNYNYTE 230
Score = 131 bits (281), Expect = 4e-030
Identities = 65/102 (63%), Positives = 69/102 (67%)
Frame = +3 / -3
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 313 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 134
Query: 480 LASLHFHPPLQP**TPFLGIEAPRW*TCLG*RFPNPTT*LIF 605
S HFHPPLQ F G++APR TCLG* P PT *LIF
Sbjct: 133 GLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WLPYPTR*LIF 8
Score = 30.4 bits (60), Expect(3) = 1e-042
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +3
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 294 GGIDKNTMFSAV 329
Score = 27.6 bits (54), Expect(3) = 1e-042
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2 / +2
Query: 305 EHHVLCSTAHVPFASAAAGSMETV 234
E++V CS+ HVP +S +E++
Sbjct: 308 EYNVFCSSTHVPNSSPTTSPLESL 379
>gb|DR078575.1|DR078575 RTFEPL1_5_C10.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_5_C10_A029 5', mRNA sequence
Length = 837
Score = 152 bits (327), Expect(3) = 2e-042
Identities = 54/74 (72%), Positives = 61/74 (82%)
Frame = -3 / -3
Query: 604 KMSYVVGFGKRYPRHVHHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGPDRH 425
KMSY+VG+G YP+HVHHRGASIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGPD+
Sbjct: 835 KMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKR 656
Query: 424 DGFKDARRNYNYTE 383
D F D R NYNYTE
Sbjct: 655 DMFHDVRTNYNYTE 614
Score = 131 bits (281), Expect = 4e-030
Identities = 65/102 (63%), Positives = 69/102 (67%)
Frame = +3 / +3
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 531 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 710
Query: 480 LASLHFHPPLQP**TPFLGIEAPRW*TCLG*RFPNPTT*LIF 605
S HFHPPLQ F G++APR TCLG* P PT *LIF
Sbjct: 711 GLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WLPYPTR*LIF 836
Score = 30.4 bits (60), Expect(3) = 2e-042
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / -3
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 550 GGIDKNTMFSAV 515
Score = 27.6 bits (54), Expect(3) = 2e-042
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2 / -2
Query: 305 EHHVLCSTAHVPFASAAAGSMETV 234
E++V CS+ HVP +S +E++
Sbjct: 536 EYNVFCSSTHVPNSSPTTSPLESL 465
>gb|BX680640.1|BX680640 BX680640 RS Pinus pinaster cDNA clone RS46D05, mRNA sequence
Length = 578
Score = 160 bits (345), Expect(2) = 5e-042
Identities = 57/77 (74%), Positives = 64/77 (83%)
Frame = -3 / +3
Query: 613 NPLKMSYVVGFGKRYPRHVHHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGP 434
NP+KMSYVVG+G YP+HVHHRGASIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGP
Sbjct: 171 NPMKMSYVVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGP 350
Query: 433 DRHDGFKDARRNYNYTE 383
D+ D F D R NYNYTE
Sbjct: 351 DKRDMFHDVRTNYNYTE 401
Score = 138 bits (296), Expect = 3e-032
Identities = 68/105 (64%), Positives = 72/105 (68%)
Frame = +3 / -2
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 484 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 305
Query: 480 LASLHFHPPLQP**TPFLGIEAPRW*TCLG*RFPNPTT*LIFKGF 614
S HFHPPLQ F G++APR TCLG* P PTT*LIF GF
Sbjct: 304 GLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WLPYPTT*LIFIGF 170
Score = 30.4 bits (60), Expect(2) = 5e-042
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +3
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 465 GGIDKNTMFSAV 500
>gb|DR744307.1|DR744307 RTCU1_21_D02.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_21_D02_A029 5', mRNA sequence
Length = 871
Score = 159 bits (342), Expect(2) = 1e-041
Identities = 56/77 (72%), Positives = 64/77 (83%)
Frame = -3 / +1
Query: 613 NPLKMSYVVGFGKRYPRHVHHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGP 434
NP+KMSY+VG+G YP+HVHHRGASIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGP
Sbjct: 106 NPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGP 285
Query: 433 DRHDGFKDARRNYNYTE 383
D+ D F D R NYNYTE
Sbjct: 286 DKRDMFHDVRTNYNYTE 336
Score = 135 bits (290), Expect = 2e-031
Identities = 67/105 (63%), Positives = 71/105 (67%)
Frame = +3 / -3
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 419 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 240
Query: 480 LASLHFHPPLQP**TPFLGIEAPRW*TCLG*RFPNPTT*LIFKGF 614
S HFHPPLQ F G++APR TCLG* P PT *LIF GF
Sbjct: 239 GLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WLPYPTR*LIFIGF 105
Score = 30.4 bits (60), Expect(2) = 1e-041
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +1
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 400 GGIDKNTMFSAV 435
>gb|CO361699.1|CO361699 NDL2_6_B04.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_6_B04_A029 5', mRNA sequence
Length = 818
Score = 159 bits (342), Expect(2) = 1e-041
Identities = 56/77 (72%), Positives = 64/77 (83%)
Frame = -3 / +1
Query: 613 NPLKMSYVVGFGKRYPRHVHHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGP 434
NP+KMSY+VG+G YP+HVHHRGASIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGP
Sbjct: 28 NPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGP 207
Query: 433 DRHDGFKDARRNYNYTE 383
D+ D F D R NYNYTE
Sbjct: 208 DKRDMFHDVRTNYNYTE 258
Score = 135 bits (290), Expect = 2e-031
Identities = 67/105 (63%), Positives = 71/105 (67%)
Frame = +3 / -1
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 341 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 162
Query: 480 LASLHFHPPLQP**TPFLGIEAPRW*TCLG*RFPNPTT*LIFKGF 614
S HFHPPLQ F G++APR TCLG* P PT *LIF GF
Sbjct: 161 GLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WLPYPTR*LIFIGF 27
Score = 30.4 bits (60), Expect(2) = 1e-041
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +1
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 322 GGIDKNTMFSAV 357
>gb|BG625807.1|BG625807 NXPV_066_C10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_066_C10 5' similar to Arabidopsis
thaliana sequence At5g49720 cellulase homolog OR16pep
precursor (pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 520
Score = 159 bits (342), Expect(2) = 1e-041
Identities = 56/77 (72%), Positives = 64/77 (83%)
Frame = -3 / +2
Query: 613 NPLKMSYVVGFGKRYPRHVHHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGP 434
NP+KMSY+VG+G YP+HVHHRGASIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGP
Sbjct: 146 NPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGP 325
Query: 433 DRHDGFKDARRNYNYTE 383
D+ D F D R NYNYTE
Sbjct: 326 DKRDMFHDVRTNYNYTE 376
Score = 135 bits (290), Expect = 2e-031
Identities = 67/105 (63%), Positives = 71/105 (67%)
Frame = +3 / -2
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 459 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 280
Query: 480 LASLHFHPPLQP**TPFLGIEAPRW*TCLG*RFPNPTT*LIFKGF 614
S HFHPPLQ F G++APR TCLG* P PT *LIF GF
Sbjct: 279 GLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WLPYPTR*LIFIGF 145
Score = 30.4 bits (60), Expect(2) = 1e-041
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +2
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 440 GGIDKNTMFSAV 475
>gb|BQ698529.1|BQ698529 NXPV_071_A11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_071_A11 5' similar to Arabidopsis
thaliana sequence At5g49720 cellulase homolog OR16pep
precursor (pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 518
Score = 159 bits (342), Expect(2) = 1e-041
Identities = 56/77 (72%), Positives = 64/77 (83%)
Frame = -3 / +2
Query: 613 NPLKMSYVVGFGKRYPRHVHHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGP 434
NP+KMSY+VG+G YP+HVHHRGASIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGP
Sbjct: 146 NPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGP 325
Query: 433 DRHDGFKDARRNYNYTE 383
D+ D F D R NYNYTE
Sbjct: 326 DKRDMFHDVRTNYNYTE 376
Score = 135 bits (290), Expect = 2e-031
Identities = 67/105 (63%), Positives = 71/105 (67%)
Frame = +3 / -3
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 459 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 280
Query: 480 LASLHFHPPLQP**TPFLGIEAPRW*TCLG*RFPNPTT*LIFKGF 614
S HFHPPLQ F G++APR TCLG* P PT *LIF GF
Sbjct: 279 GLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WLPYPTR*LIFIGF 145
Score = 30.4 bits (60), Expect(2) = 1e-041
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +2
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 440 GGIDKNTMFSAV 475
>gb|AW290720.1|AW290720 NXNV046B09F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV046B09 5', mRNA sequence
Length = 450
Score = 159 bits (342), Expect(2) = 1e-041
Identities = 56/77 (72%), Positives = 64/77 (83%)
Frame = -3 / +3
Query: 613 NPLKMSYVVGFGKRYPRHVHHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGP 434
NP+KMSY+VG+G YP+HVHHRGASIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGP
Sbjct: 27 NPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGP 206
Query: 433 DRHDGFKDARRNYNYTE 383
D+ D F D R NYNYTE
Sbjct: 207 DKRDMFHDVRTNYNYTE 257
Score = 135 bits (290), Expect = 2e-031
Identities = 67/105 (63%), Positives = 71/105 (67%)
Frame = +3 / -3
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 340 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 161
Query: 480 LASLHFHPPLQP**TPFLGIEAPRW*TCLG*RFPNPTT*LIFKGF 614
S HFHPPLQ F G++APR TCLG* P PT *LIF GF
Sbjct: 160 GLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WLPYPTR*LIFIGF 26
Score = 30.4 bits (60), Expect(2) = 1e-041
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +3
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 321 GGIDKNTMFSAV 356
>gb|CD027383.1|CD027383 NXNV046B09 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV046B09 5' similar to Arabidopsis thaliana sequence
At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 450
Score = 159 bits (342), Expect(2) = 1e-041
Identities = 56/77 (72%), Positives = 64/77 (83%)
Frame = -3 / +3
Query: 613 NPLKMSYVVGFGKRYPRHVHHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGP 434
NP+KMSY+VG+G YP+HVHHRGASIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGP
Sbjct: 27 NPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGP 206
Query: 433 DRHDGFKDARRNYNYTE 383
D+ D F D R NYNYTE
Sbjct: 207 DKRDMFHDVRTNYNYTE 257
Score = 135 bits (290), Expect = 2e-031
Identities = 67/105 (63%), Positives = 71/105 (67%)
Frame = +3 / -3
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 340 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 161
Query: 480 LASLHFHPPLQP**TPFLGIEAPRW*TCLG*RFPNPTT*LIFKGF 614
S HFHPPLQ F G++APR TCLG* P PT *LIF GF
Sbjct: 160 GLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WLPYPTR*LIFIGF 26
Score = 30.4 bits (60), Expect(2) = 1e-041
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +3
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 321 GGIDKNTMFSAV 356
>gb|BX255589.1|BX255589 BX255589 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP007E03 similar to ENDOGLUCANASE PRECURSOR,
mRNA sequence
Length = 693
Score = 160 bits (345), Expect(2) = 3e-041
Identities = 57/77 (74%), Positives = 64/77 (83%)
Frame = -3 / +3
Query: 613 NPLKMSYVVGFGKRYPRHVHHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGP 434
NP+KMSYVVG+G YP+HVHHRGASIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGP
Sbjct: 330 NPMKMSYVVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGP 509
Query: 433 DRHDGFKDARRNYNYTE 383
D+ D F D R NYNYTE
Sbjct: 510 DKRDMFHDVRTNYNYTE 560
Score = 134 bits (287), Expect = 6e-031
Identities = 67/105 (63%), Positives = 71/105 (67%)
Frame = +3 / -3
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS P PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 643 VFLSIPXVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 464
Query: 480 LASLHFHPPLQP**TPFLGIEAPRW*TCLG*RFPNPTT*LIFKGF 614
S HFHPPLQ F G++APR TCLG* P PTT*LIF GF
Sbjct: 463 GLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WLPYPTT*LIFIGF 329
Score = 27.6 bits (54), Expect(2) = 3e-041
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -3 / +3
Query: 316 GVDKNTMFSAV 284
G+DKNTMFSAV
Sbjct: 627 GIDKNTMFSAV 659
>gb|DR020418.1|DR020418 STRS1_36_G05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_36_G05_A034 5', mRNA sequence
Length = 735
Score = 148 bits (317), Expect(3) = 5e-041
Identities = 52/72 (72%), Positives = 59/72 (81%)
Frame = -3 / +3
Query: 598 SYVVGFGKRYPRHVHHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGPDRHDG 419
SY+VG+G YP+HVHHRGASIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGPD+ D
Sbjct: 3 SYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDM 182
Query: 418 FKDARRNYNYTE 383
F D R NYNYTE
Sbjct: 183 FHDVRTNYNYTE 218
Score = 127 bits (271), Expect = 9e-029
Identities = 63/100 (63%), Positives = 67/100 (67%)
Frame = +3 / -3
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 301 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 122
Query: 480 LASLHFHPPLQP**TPFLGIEAPRW*TCLG*RFPNPTT*L 599
S HFHPPLQ F G++APR TCLG* P PT *L
Sbjct: 121 GLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WLPYPTR*L 2
Score = 30.4 bits (60), Expect(3) = 5e-041
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +3
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 282 GGIDKNTMFSAV 317
Score = 27.6 bits (54), Expect(3) = 5e-041
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2 / +2
Query: 305 EHHVLCSTAHVPFASAAAGSMETV 234
E++V CS+ HVP +S +E++
Sbjct: 296 EYNVFCSSTHVPNSSPTTSPLESL 367
>gb|DR051556.1|DR051556 RTBOR1_30_H04.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_30_H04_A029 5', mRNA sequence
Length = 591
Score = 148 bits (317), Expect(3) = 5e-041
Identities = 52/72 (72%), Positives = 59/72 (81%)
Frame = -3 / +2
Query: 598 SYVVGFGKRYPRHVHHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGPDRHDG 419
SY+VG+G YP+HVHHRGASIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGPD+ D
Sbjct: 2 SYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDM 181
Query: 418 FKDARRNYNYTE 383
F D R NYNYTE
Sbjct: 182 FHDVRTNYNYTE 217
Score = 127 bits (271), Expect = 9e-029
Identities = 63/100 (63%), Positives = 67/100 (67%)
Frame = +3 / -1
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 300 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 121
Query: 480 LASLHFHPPLQP**TPFLGIEAPRW*TCLG*RFPNPTT*L 599
S HFHPPLQ F G++APR TCLG* P PT *L
Sbjct: 120 GLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WLPYPTR*L 1
Score = 30.4 bits (60), Expect(3) = 5e-041
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +2
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 281 GGIDKNTMFSAV 316
Score = 27.6 bits (54), Expect(3) = 5e-041
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2 / +1
Query: 305 EHHVLCSTAHVPFASAAAGSMETV 234
E++V CS+ HVP +S +E++
Sbjct: 295 EYNVFCSSTHVPNSSPTTSPLESL 366
>gb|DR164313.1|DR164313 RTFE1_48_E03.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_48_E03_A029 3', mRNA sequence
Length = 839
Score = 146 bits (313), Expect(3) = 2e-040
Identities = 51/71 (71%), Positives = 58/71 (81%)
Frame = -3 / +2
Query: 595 YVVGFGKRYPRHVHHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGPDRHDGF 416
Y+VG+G YP+HVHHRGASIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGPD+ D F
Sbjct: 2 YLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMF 181
Query: 415 KDARRNYNYTE 383
D R NYNYTE
Sbjct: 182 HDVRTNYNYTE 214
Score = 125 bits (267), Expect = 3e-028
Identities = 61/97 (62%), Positives = 65/97 (67%)
Frame = +3 / -3
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 297 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 118
Query: 480 LASLHFHPPLQP**TPFLGIEAPRW*TCLG*RFPNPT 590
S HFHPPLQ F G++APR TCLG* P PT
Sbjct: 117 GLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WLPYPT 7
Score = 30.4 bits (60), Expect(3) = 2e-040
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +2
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 278 GGIDKNTMFSAV 313
Score = 27.6 bits (54), Expect(3) = 2e-040
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2 / +1
Query: 305 EHHVLCSTAHVPFASAAAGSMETV 234
E++V CS+ HVP +S +E++
Sbjct: 292 EYNVFCSSTHVPNSSPTTSPLESL 363
>gb|BV079723.1| Pp_Korrigan Pinus pinaster megagametophytes Pinus pinaster STS
genomic, sequence tagged site
Length = 937
Score = 158 bits (340), Expect = 3e-038
Identities = 56/76 (73%), Positives = 63/76 (82%)
Frame = -3 / +3
Query: 613 NPLKMSYVVGFGKRYPRHVHHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGP 434
NP+KMSYVVG+G YP+HVHHRGASIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGP
Sbjct: 708 NPMKMSYVVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGP 887
Query: 433 DRHDGFKDARRNYNYT 386
D+ D F D R NYNYT
Sbjct: 888 DKRDMFHDVRTNYNYT 935
>gb|CF667382.1|CF667382 RTCNT1_29_H05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_29_H05_A029 5', mRNA sequence
Length = 772
Score = 146 bits (313), Expect(2) = 1e-037
Identities = 51/71 (71%), Positives = 58/71 (81%)
Frame = -3 / +1
Query: 595 YVVGFGKRYPRHVHHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGPDRHDGF 416
Y+VG+G YP+HVHHRGASIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGPD+ D F
Sbjct: 1 YLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMF 180
Query: 415 KDARRNYNYTE 383
D R NYNYTE
Sbjct: 181 HDVRTNYNYTE 213
Score = 125 bits (267), Expect = 3e-028
Identities = 61/97 (62%), Positives = 65/97 (67%)
Frame = +3 / -3
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 296 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 117
Query: 480 LASLHFHPPLQP**TPFLGIEAPRW*TCLG*RFPNPT 590
S HFHPPLQ F G++APR TCLG* P PT
Sbjct: 116 GLSRHFHPPLQLYFILFFGMDAPR*CTCLG*WLPYPT 6
Score = 30.4 bits (60), Expect(2) = 1e-037
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +1
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 277 GGIDKNTMFSAV 312
>gb|CF479877.1|CF479877 RTWW3_12_D09.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_12_D09_A022 5', mRNA sequence
Length = 700
Score = 155 bits (332), Expect = 4e-037
Identities = 54/75 (72%), Positives = 62/75 (82%)
Frame = -3 / +1
Query: 613 NPLKMSYVVGFGKRYPRHVHHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGP 434
NP+KMSY+VG+G YP+HVHHRGASIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGP
Sbjct: 475 NPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGP 654
Query: 433 DRHDGFKDARRNYNY 389
D+ D F D R NYNY
Sbjct: 655 DKRDMFHDVRTNYNY 699
>gb|BF010621.1|BF010621 NXCI_087_A08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_087_A08 5' similar to Arabidopsis
thaliana sequence At5g49720 cellulase homolog OR16pep
precursor (pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 388
Score = 154 bits (331), Expect = 5e-037
Identities = 54/77 (70%), Positives = 62/77 (80%)
Frame = -3 / +2
Query: 613 NPLKMSYVVGFGKRYPRHVHHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGP 434
NP+KMSY+VG+G YP+HVHHRGASIPKN + Y CKGGWKWRD+ +PNPN I MVAGP
Sbjct: 77 NPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVXXMVAGP 256
Query: 433 DRHDGFKDARRNYNYTE 383
D+ D F D R NYNYTE
Sbjct: 257 DKRDMFHDVRTNYNYTE 307
Score = 118 bits (253), Expect = 3e-026
Identities = 61/103 (59%), Positives = 65/103 (63%)
Frame = +3 / -2
Query: 306 LSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGFLA 485
LS PP PDK T AA PAL ASV SV*L* +R S N S SGPATM + LG G
Sbjct: 384 LSIPPVSPPDKETKAAXNPALXASVGSV*L*LVRTSWNISRLSGPATMXXTITLGLGLGL 205
Query: 486 SLHFHPPLQP**TPFLGIEAPRW*TCLG*RFPNPTT*LIFKGF 614
S HFHPPLQ F G++APR TCLG* P PT *LIF GF
Sbjct: 204 SRHFHPPLQLYFILFFGMDAPR*CTCLG*WLPYPTR*LIFIGF 76
>gb|CV032797.1|CV032797 RTNACL1_18_H11.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_18_H11_A029 3', mRNA sequence
Length = 764
Score = 142 bits (305), Expect(2) = 2e-035
Identities = 52/77 (67%), Positives = 60/77 (77%)
Frame = -3 / +3
Query: 613 NPLKMSYVVGFGKRYPRHVHHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGP 434
NPL MSYVVG+G RYP+HVHHR ASIP+NGV Y C G+KWRD+ PNP+ + GAMV GP
Sbjct: 96 NPLGMSYVVGYGNRYPKHVHHRAASIPQNGVKYTCTSGFKWRDSPNPNPHVLTGAMVGGP 275
Query: 433 DRHDGFKDARRNYNYTE 383
D+ D F DAR NYN TE
Sbjct: 276 DKFDRFNDARNNYNQTE 326
Score = 106 bits (226), Expect(2) = 2e-023
Identities = 56/94 (59%), Positives = 60/94 (63%)
Frame = +3 / -2
Query: 333 DKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGFLASLHFHPPLQ 512
DKA NAAT PALPA V SV L* LRASL S SGP T+AP G GF S H P +
Sbjct: 376 DKAINAATNPALPAIVGSVWL*LLRASLKRSNLSGPPTIAPVSTCGLGFGLSRHLKPLVH 197
Query: 513 P**TPFLGIEAPRW*TCLG*RFPNPTT*LIFKGF 614
TPF GIEA R TC G*R P PTT*L+ +GF
Sbjct: 196 VYFTPF*GIEAAR*CTCFG*RLP*PTT*LMPRGF 95
Score = 26.7 bits (52), Expect(2) = 2e-035
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -2 / +2
Query: 305 EHHVLCSTAHVPFASAAAGSMETV 234
E+H+L S+ +VP +A+ SME++
Sbjct: 413 EYHLLFSSTNVPHDAASPCSMESI 484
Score = 22.1 bits (42), Expect(2) = 2e-023
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1 / -3
Query: 241 SMEPAAAEAKGTWAVLQRTWCS 306
SME A + GT L+R W S
Sbjct: 477 SMEQGEAASWGTLVELKRRWYS 412
>gb|BX255006.1|BX255006 BX255006 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP109B04 similar to ENDOGLUCANASE PRECURSOR,
mRNA sequence
Length = 510
Score = 127 bits (272), Expect(3) = 3e-034
Identities = 45/61 (73%), Positives = 50/61 (81%)
Frame = -3 / +2
Query: 565 RHVHHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGPDRHDGFKDARRNYNYT 386
+HVHHRGASIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGPD+ D F D R NYNYT
Sbjct: 2 KHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYT 181
Query: 385 E 383
E
Sbjct: 182 E 184
Score = 115 bits (246), Expect = 3e-025
Identities = 56/89 (62%), Positives = 60/89 (67%)
Frame = +3 / -1
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 267 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 88
Query: 480 LASLHFHPPLQP**TPFLGIEAPRW*TCL 566
S HFHPPLQ F G++APR TCL
Sbjct: 87 GLSRHFHPPLQLYFILFFGMDAPR*CTCL 1
Score = 30.4 bits (60), Expect(3) = 3e-034
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +2
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 248 GGIDKNTMFSAV 283
Score = 25.4 bits (49), Expect(3) = 3e-034
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -2 / +1
Query: 305 EHHVLCSTAHVPFASAAAGSMETV 234
E++V CS+ HVP + +E++
Sbjct: 262 EYNVFCSSTHVPNSPPTTSPLESL 333
>gb|BQ699769.1|BQ699769 NXRV128_G04_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV128_G04 5' similar to Arabidopsis thaliana
sequence At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 512
Score = 144 bits (309), Expect = 5e-034
Identities = 51/76 (67%), Positives = 59/76 (77%)
Frame = -3 / +2
Query: 613 NPLKMSYVVGFGKRYPRHVHHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGP 434
NP+KMSY+VG+G YP+HVHHRGASIPKN + Y CKGGWKWRD+ +PNPN I GA VAGP
Sbjct: 236 NPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNXIVGAXVAGP 415
Query: 433 DRHDGFKDARRNYNYT 386
D+ D F D NY T
Sbjct: 416 DKRDMFHDVPTNYXXT 463
>gb|BX682244.2|BX682244 BX682244 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 114A07 similar to Endoglucanase, mRNA
sequence
Length = 370
Score = 121 bits (258), Expect(2) = 3e-030
Identities = 43/58 (74%), Positives = 47/58 (81%)
Frame = -3 / +1
Query: 556 HHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGPDRHDGFKDARRNYNYTE 383
HHRGASIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGPD+ D F D R NYNYTE
Sbjct: 1 HHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTE 174
Score = 111 bits (236), Expect = 6e-024
Identities = 53/84 (63%), Positives = 57/84 (67%)
Frame = +3 / -3
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 257 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 78
Query: 480 LASLHFHPPLQP**TPFLGIEAPR 551
S HFHPPLQ F G++APR
Sbjct: 77 GLSRHFHPPLQLYFILFFGMDAPR 6
Score = 30.4 bits (60), Expect(2) = 3e-030
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +1
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 238 GGIDKNTMFSAV 273
>gb|CV033733.1|CV033733 RTNACL1_36_G06.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_36_G06_A029 3', mRNA sequence
Length = 822
Score = 108 bits (231), Expect(3) = 2e-029
Identities = 39/54 (72%), Positives = 43/54 (79%)
Frame = -3 / +3
Query: 544 ASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGPDRHDGFKDARRNYNYTE 383
ASIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGPD+ D F D R NYNYTE
Sbjct: 3 ASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTE 164
Score = 105 bits (224), Expect = 3e-022
Identities = 51/82 (62%), Positives = 55/82 (67%)
Frame = +3 / -3
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 247 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 68
Query: 480 LASLHFHPPLQP**TPFLGIEA 545
S HFHPPLQ F G++A
Sbjct: 67 GLSRHFHPPLQLYFILFFGMDA 2
Score = 30.4 bits (60), Expect(3) = 2e-029
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +3
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 228 GGIDKNTMFSAV 263
Score = 27.6 bits (54), Expect(3) = 2e-029
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2 / +2
Query: 305 EHHVLCSTAHVPFASAAAGSMETV 234
E++V CS+ HVP +S +E++
Sbjct: 242 EYNVFCSSTHVPNSSPTTSPLESL 313
>gb|DR096912.1|DR096912 STRR1_31_E11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_31_E11_A033 3', mRNA sequence
Length = 803
Score = 108 bits (231), Expect(3) = 2e-029
Identities = 39/54 (72%), Positives = 43/54 (79%)
Frame = -3 / +3
Query: 544 ASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGPDRHDGFKDARRNYNYTE 383
ASIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGPD+ D F D R NYNYTE
Sbjct: 3 ASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTE 164
Score = 106 bits (226), Expect = 1e-022
Identities = 51/82 (62%), Positives = 55/82 (67%)
Frame = +3 / -2
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK TNAAT PALPASV SV*L* +R S N S SGPATMAP + G G
Sbjct: 247 VFLSIPPVSPPDKETNAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITFGLGL 68
Query: 480 LASLHFHPPLQP**TPFLGIEA 545
S HFHPPLQ F G++A
Sbjct: 67 GLSRHFHPPLQLYFILFFGMDA 2
Score = 30.4 bits (60), Expect(3) = 2e-029
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +3
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 228 GGIDKNTMFSAV 263
Score = 27.6 bits (54), Expect(3) = 2e-029
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2 / +2
Query: 305 EHHVLCSTAHVPFASAAAGSMETV 234
E++V CS+ HVP +S +E++
Sbjct: 242 EYNVFCSSTHVPNSSPTTSPLESL 313
>gb|CF389328.1|CF389328 RTDR2_9_B11.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_9_B11_A021 5', mRNA
sequence
Length = 722
Score = 113 bits (242), Expect(2) = 5e-028
Identities = 41/56 (73%), Positives = 45/56 (80%)
Frame = -3 / +1
Query: 550 RGASIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGPDRHDGFKDARRNYNYTE 383
RGASIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGPD+ D F D R NYNYTE
Sbjct: 1 RGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTE 168
Score = 108 bits (231), Expect = 3e-023
Identities = 52/83 (62%), Positives = 56/83 (67%)
Frame = +3 / -1
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 251 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 72
Query: 480 LASLHFHPPLQP**TPFLGIEAP 548
S HFHPPLQ F G++AP
Sbjct: 71 GLSRHFHPPLQLYFILFFGMDAP 3
Score = 30.4 bits (60), Expect(2) = 5e-028
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +1
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 232 GGIDKNTMFSAV 267
>gb|CO361628.1|CO361628 NDL2_6_B04.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_6_B04_A029 3', mRNA sequence
Length = 831
Score = 103 bits (220), Expect = 1e-021
Identities = 48/71 (67%), Positives = 50/71 (70%)
Frame = +3 / -1
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 237 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 58
Query: 480 LASLHFHPPLQ 512
S HFHPPLQ
Sbjct: 57 GLSRHFHPPLQ 25
Score = 103 bits (219), Expect(3) = 8e-028
Identities = 36/51 (70%), Positives = 40/51 (78%)
Frame = -3 / +2
Query: 535 PKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGPDRHDGFKDARRNYNYTE 383
PKN + Y CKGGWKWRD+ +PNPN I GAMVAGPD+ D F D R NYNYTE
Sbjct: 2 PKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTE 154
Score = 30.4 bits (60), Expect(3) = 8e-028
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +2
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 218 GGIDKNTMFSAV 253
Score = 27.6 bits (54), Expect(3) = 8e-028
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2 / +1
Query: 305 EHHVLCSTAHVPFASAAAGSMETV 234
E++V CS+ HVP +S +E++
Sbjct: 232 EYNVFCSSTHVPNSSPTTSPLESL 303
>gb|DR744237.1|DR744237 RTCU1_21_D02.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_21_D02_A029 3', mRNA sequence
Length = 830
Score = 106 bits (227), Expect(2) = 6e-026
Identities = 38/53 (71%), Positives = 42/53 (79%)
Frame = -3 / +1
Query: 541 SIPKNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGPDRHDGFKDARRNYNYTE 383
SIPKN + Y CKGGWKWRD+ +PNPN I GAMVAGPD+ D F D R NYNYTE
Sbjct: 1 SIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTE 159
Score = 103 bits (220), Expect = 1e-021
Identities = 48/71 (67%), Positives = 50/71 (70%)
Frame = +3 / -1
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 242 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 63
Query: 480 LASLHFHPPLQ 512
S HFHPPLQ
Sbjct: 62 GLSRHFHPPLQ 30
Score = 30.4 bits (60), Expect(2) = 6e-026
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +1
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 223 GGIDKNTMFSAV 258
>gb|AI812676.1|AI812676 17G4 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 479
Score = 103 bits (220), Expect = 1e-021
Identities = 48/71 (67%), Positives = 50/71 (70%)
Frame = +3 / -3
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 225 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 46
Query: 480 LASLHFHPPLQ 512
S HFHPPLQ
Sbjct: 45 GLSRHFHPPLQ 13
Score = 95.9 bits (203), Expect(3) = 1e-025
Identities = 33/47 (70%), Positives = 37/47 (78%)
Frame = -3 / +2
Query: 523 VHYGCKGGWKWRDAKKPNPNTIAGAMVAGPDRHDGFKDARRNYNYTE 383
+ Y CKGGWKWRD+ +PNPN I GAMVAGPD+ D F D R NYNYTE
Sbjct: 2 IKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTE 142
Score = 30.4 bits (60), Expect(3) = 1e-025
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +2
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 206 GGIDKNTMFSAV 241
Score = 27.6 bits (54), Expect(3) = 1e-025
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2 / +1
Query: 305 EHHVLCSTAHVPFASAAAGSMETV 234
E++V CS+ HVP +S +E++
Sbjct: 220 EYNVFCSSTHVPNSSPTTSPLESL 291
>gb|DR096648.1|DR096648 STRR1_29_G07.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_29_G07_A033 3', mRNA sequence
Length = 810
Score = 103 bits (220), Expect = 1e-021
Identities = 48/71 (67%), Positives = 50/71 (70%)
Frame = +3 / -1
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 219 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 40
Query: 480 LASLHFHPPLQ 512
S HFHPPLQ
Sbjct: 39 GLSRHFHPPLQ 7
Score = 95.0 bits (201), Expect(3) = 2e-025
Identities = 33/45 (73%), Positives = 36/45 (80%)
Frame = -3 / +2
Query: 517 YGCKGGWKWRDAKKPNPNTIAGAMVAGPDRHDGFKDARRNYNYTE 383
Y CKGGWKWRD+ +PNPN I GAMVAGPD+ D F D R NYNYTE
Sbjct: 2 YSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTE 136
Score = 30.4 bits (60), Expect(3) = 2e-025
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +2
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 200 GGIDKNTMFSAV 235
Score = 27.6 bits (54), Expect(3) = 2e-025
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2 / +1
Query: 305 EHHVLCSTAHVPFASAAAGSMETV 234
E++V CS+ HVP +S +E++
Sbjct: 214 EYNVFCSSTHVPNSSPTTSPLESL 285
>gb|CF479037.1|CF479037 RTWW3_21_G11.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_21_G11_A022 5', mRNA sequence
Length = 699
Score = 114 bits (244), Expect = 5e-025
Identities = 38/52 (73%), Positives = 45/52 (86%)
Frame = -3 / +2
Query: 613 NPLKMSYVVGFGKRYPRHVHHRGASIPKNGVHYGCKGGWKWRDAKKPNPNTI 458
NP+KMSY+VG+G YP+HVHHRGASIPKN + Y CKGGWKWRD+ +PNPN I
Sbjct: 542 NPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVI 697
>gb|BQ695579.1|BQ695579 NXPV_030_B08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_030_B08 5' similar to Arabidopsis
thaliana sequence At5g49720 cellulase homolog OR16pep
precursor (pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 320
Score = 103 bits (220), Expect = 1e-021
Identities = 48/71 (67%), Positives = 50/71 (70%)
Frame = +3 / -3
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 234 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 55
Query: 480 LASLHFHPPLQ 512
S HFHPPLQ
Sbjct: 54 GLSRHFHPPLQ 22
Score = 100 bits (212), Expect(2) = 4e-024
Identities = 35/50 (70%), Positives = 39/50 (78%)
Frame = -3 / +2
Query: 532 KNGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGPDRHDGFKDARRNYNYTE 383
KN + Y CKGGWKWRD+ +PNPN I GAMVAGPD+ D F D R NYNYTE
Sbjct: 2 KNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTE 151
Score = 30.4 bits (60), Expect(2) = 4e-024
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +2
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 215 GGIDKNTMFSAV 250
>gb|BQ700793.1|BQ700793 NXRV111_D08_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV111_D08 5' similar to Arabidopsis thaliana
sequence At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 352
Score = 62.9 bits (131), Expect(3) = 3e-023
Identities = 21/31 (67%), Positives = 26/31 (83%)
Frame = -3 / +3
Query: 613 NPLKMSYVVGFGKRYPRHVHHRGASIPKNGV 521
NP+ MSY+ G+G YP+HVHHRGASIPKN +
Sbjct: 18 NPMNMSYLEGYGSHYPKHVHHRGASIPKNKI 110
Score = 47.8 bits (98), Expect(3) = 3e-023
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = -3 / +1
Query: 517 YGCKGGWKWRDAKKPNPNTI 458
Y CKGGWKWRD+ PNPN I
Sbjct: 115 YSCKGGWKWRDSPIPNPNVI 174
Score = 34.1 bits (68), Expect(3) = 3e-023
Identities = 16/31 (51%), Positives = 17/31 (54%)
Frame = -3 / +2
Query: 475 PNPNTIAGAMVAGPDRHDGFKDARRNYNYTE 383
P P AMVAGPD+ D D R NYTE
Sbjct: 158 PIPM*YVRAMVAGPDKRDMNHDFRTXXNYTE 250
>gb|CX648196.1|CX648196 COLD1_27_D03.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_27_D03_A029 3', mRNA sequence
Length = 786
Score = 103 bits (220), Expect = 1e-021
Identities = 48/71 (67%), Positives = 50/71 (70%)
Frame = +3 / -2
Query: 300 VFLSTPPWPSPDKATNAATRPALPASVASV*L*FLRASLNPSWRSGPATMAPAMVLGFGF 479
VFLS PP PDK T AAT PALPASV SV*L* +R S N S SGPATMAP + LG G
Sbjct: 230 VFLSIPPVSPPDKETKAATNPALPASVGSV*L*LVRTSWNISRLSGPATMAPTITLGLGL 51
Query: 480 LASLHFHPPLQ 512
S HFHPPLQ
Sbjct: 50 GLSRHFHPPLQ 18
Score = 97.7 bits (207), Expect(2) = 3e-023
Identities = 34/49 (69%), Positives = 38/49 (77%)
Frame = -3 / +1
Query: 529 NGVHYGCKGGWKWRDAKKPNPNTIAGAMVAGPDRHDGFKDARRNYNYTE 383
N + Y CKGGWKWRD+ +PNPN I GAMVAGPD+ D F D R NYNYTE
Sbjct: 1 NKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTE 147
Score = 30.4 bits (60), Expect(2) = 3e-023
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +1
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 211 GGIDKNTMFSAV 246
>gb|BQ702675.1|BQ702675 NXSI_131_C04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_131_C04 5' similar to Arabidopsis thaliana
sequence At5g49720 cellulase homolog OR16pep precursor
(pir||S71215) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 481
Score = 79.9 bits (168), Expect(3) = 6e-021
Identities = 28/39 (71%), Positives = 31/39 (79%)
Frame = -3 / +3
Query: 499 WKWRDAKKPNPNTIAGAMVAGPDRHDGFKDARRNYNYTE 383
WKWRD+ +PNPN I GAMVAGPD+ D F D R NYNYTE
Sbjct: 3 WKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTE 119
Score = 30.4 bits (60), Expect(3) = 6e-021
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = -3 / +3
Query: 319 GGVDKNTMFSAV 284
GG+DKNTMFSAV
Sbjct: 183 GGIDKNTMFSAV 218
Score = 27.6 bits (54), Expect(3) = 6e-021
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2 / +2
Query: 305 EHHVLCSTAHVPFASAAAGSMETV 234
E++V CS+ HVP +S +E++
Sbjct: 197 EYNVFCSSTHVPNSSPTTSPLESL 268
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 364,961,129
Number of Sequences: 355925
Number of extensions: 5871149
Number of successful extensions: 57515
Number of sequences better than 1.0e-020: 55
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 8303856210
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)