TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3390529.2.1
(407 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF401345.1|CF401345 RTWW1_11_H08.g1_A015 Well-watered lo... 152 1e-036
gb|CF477930.1|CF477930 RTWW3_13_H08.g1_A022 Well-watered lo... 152 1e-036
gb|CO365148.1|CO365148 RTK1_23_H12.g1_A029 Roots minus pota... 152 1e-036
gb|CV031496.1|CV031496 RTNACL1_1_H12.g1_A029 Roots plus add... 152 1e-036
gb|CV035625.1|CV035625 RTNACL1_41_G03.b1_A029 Roots plus ad... 152 1e-036
gb|DR011363.1|DR011363 HEAT1_5_F08.b1_A029 Root at 37 C for... 152 1e-036
gb|DR069032.1|DR069032 RTDK1_4_H11.b1_A029 Roots, dark Pinu... 152 1e-036
gb|DR069101.1|DR069101 RTDK1_4_H11.g1_A029 Roots, dark Pinu... 152 1e-036
gb|DR091916.1|DR091916 RTAL1_24_G04.g1_A029 Roots plus adde... 152 1e-036
gb|DR091845.1|DR091845 RTAL1_24_G04.b1_A029 Roots plus adde... 133 6e-031
gb|DR078329.1|DR078329 RTFEPL1_3_H07.b1_A029 Roots plus add... 129 8e-030
>gb|CF401345.1|CF401345 RTWW1_11_H08.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_11_H08_A015 5', mRNA sequence
Length = 678
Score = 152 bits (327), Expect = 1e-036
Identities = 64/100 (64%), Positives = 74/100 (74%)
Frame = +1 / +3
Query: 106 RPPGSAGSHFLGGAGVRGLEIGGNFIKFTAIGVYLEDAAVPALAKKWGGKTADELASDAA 285
RPPG+ LGGAGVR L I G FI FTAIGVY++ A VP LA KW GKT +EL A
Sbjct: 57 RPPGATKDLVLGGAGVRQLPIEGKFITFTAIGVYIDRAIVPHLASKWKGKTIEELNDSAE 236
Query: 286 FFRDVVTGDFEKFTRVTMILPLTGEQYAEKVTENCVAFWK 405
FF D+VT ++EKFTRVTM+LPLTG QY+EKVTE C A W+
Sbjct: 237 FFMDIVTCEYEKFTRVTMVLPLTGIQYSEKVTEGCKAAWE 356
>gb|CF477930.1|CF477930 RTWW3_13_H08.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_13_H08_A022 5', mRNA sequence
Length = 732
Score = 152 bits (327), Expect = 1e-036
Identities = 64/100 (64%), Positives = 74/100 (74%)
Frame = +1 / +3
Query: 106 RPPGSAGSHFLGGAGVRGLEIGGNFIKFTAIGVYLEDAAVPALAKKWGGKTADELASDAA 285
RPPG+ LGGAGVR L I G FI FTAIGVY++ A VP LA KW GKT +EL A
Sbjct: 288 RPPGATKDLVLGGAGVRQLPIEGKFITFTAIGVYIDRAIVPHLASKWKGKTIEELNDSAE 467
Query: 286 FFRDVVTGDFEKFTRVTMILPLTGEQYAEKVTENCVAFWK 405
FF D+VT ++EKFTRVTM+LPLTG QY+EKVTE C A W+
Sbjct: 468 FFMDIVTCEYEKFTRVTMVLPLTGIQYSEKVTEGCKAAWE 587
>gb|CO365148.1|CO365148 RTK1_23_H12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_23_H12_A029 5', mRNA sequence
Length = 845
Score = 152 bits (327), Expect = 1e-036
Identities = 64/100 (64%), Positives = 74/100 (74%)
Frame = +1 / -2
Query: 106 RPPGSAGSHFLGGAGVRGLEIGGNFIKFTAIGVYLEDAAVPALAKKWGGKTADELASDAA 285
RPPG+ LGGAGVR L I G FI FTAIGVY++ A VP LA KW GKT +EL A
Sbjct: 733 RPPGATKDLVLGGAGVRQLPIEGKFITFTAIGVYIDRAIVPHLASKWKGKTIEELNDSAE 554
Query: 286 FFRDVVTGDFEKFTRVTMILPLTGEQYAEKVTENCVAFWK 405
FF D+VT ++EKFTRVTM+LPLTG QY+EKVTE C A W+
Sbjct: 553 FFMDIVTCEYEKFTRVTMVLPLTGIQYSEKVTEGCKAAWE 434
>gb|CV031496.1|CV031496 RTNACL1_1_H12.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_1_H12_A029 5', mRNA sequence
Length = 774
Score = 152 bits (327), Expect = 1e-036
Identities = 64/100 (64%), Positives = 74/100 (74%)
Frame = +1 / +2
Query: 106 RPPGSAGSHFLGGAGVRGLEIGGNFIKFTAIGVYLEDAAVPALAKKWGGKTADELASDAA 285
RPPG+ LGGAGVR L I G FI FTAIGVY++ A VP LA KW GKT +EL A
Sbjct: 188 RPPGATKDLVLGGAGVRQLPIEGKFITFTAIGVYIDRAIVPHLASKWKGKTIEELNDSAE 367
Query: 286 FFRDVVTGDFEKFTRVTMILPLTGEQYAEKVTENCVAFWK 405
FF D+VT ++EKFTRVTM+LPLTG QY+EKVTE C A W+
Sbjct: 368 FFMDIVTCEYEKFTRVTMVLPLTGIQYSEKVTEGCKAAWE 487
>gb|CV035625.1|CV035625 RTNACL1_41_G03.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_41_G03_A029 3', mRNA sequence
Length = 847
Score = 152 bits (327), Expect = 1e-036
Identities = 64/100 (64%), Positives = 74/100 (74%)
Frame = +1 / -1
Query: 106 RPPGSAGSHFLGGAGVRGLEIGGNFIKFTAIGVYLEDAAVPALAKKWGGKTADELASDAA 285
RPPG+ LGGAGVR L I G FI FTAIGVY++ A VP LA KW GKT +EL A
Sbjct: 451 RPPGATKDLVLGGAGVRQLPIEGKFITFTAIGVYIDRAIVPHLASKWKGKTIEELNDSAE 272
Query: 286 FFRDVVTGDFEKFTRVTMILPLTGEQYAEKVTENCVAFWK 405
FF D+VT ++EKFTRVTM+LPLTG QY+EKVTE C A W+
Sbjct: 271 FFMDIVTCEYEKFTRVTMVLPLTGIQYSEKVTEGCKAAWE 152
>gb|DR011363.1|DR011363 HEAT1_5_F08.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_5_F08_A029 3', mRNA sequence
Length = 772
Score = 152 bits (327), Expect = 1e-036
Identities = 64/100 (64%), Positives = 74/100 (74%)
Frame = +1 / -3
Query: 106 RPPGSAGSHFLGGAGVRGLEIGGNFIKFTAIGVYLEDAAVPALAKKWGGKTADELASDAA 285
RPPG+ LGGAGVR L I G FI FTAIGVY++ A VP LA KW GKT +EL A
Sbjct: 437 RPPGATKDLVLGGAGVRQLPIEGKFITFTAIGVYIDRAIVPHLASKWKGKTIEELNDSAE 258
Query: 286 FFRDVVTGDFEKFTRVTMILPLTGEQYAEKVTENCVAFWK 405
FF D+VT ++EKFTRVTM+LPLTG QY+EKVTE C A W+
Sbjct: 257 FFMDIVTCEYEKFTRVTMVLPLTGIQYSEKVTEGCKAAWE 138
>gb|DR069032.1|DR069032 RTDK1_4_H11.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_4_H11_A029 3', mRNA sequence
Length = 522
Score = 152 bits (327), Expect = 1e-036
Identities = 64/100 (64%), Positives = 74/100 (74%)
Frame = +1 / -2
Query: 106 RPPGSAGSHFLGGAGVRGLEIGGNFIKFTAIGVYLEDAAVPALAKKWGGKTADELASDAA 285
RPPG+ LGGAGVR L I G FI FTAIGVY++ A VP LA KW GKT +EL A
Sbjct: 437 RPPGATKDLVLGGAGVRQLPIEGKFITFTAIGVYIDRAIVPHLASKWKGKTIEELNDSAE 258
Query: 286 FFRDVVTGDFEKFTRVTMILPLTGEQYAEKVTENCVAFWK 405
FF D+VT ++EKFTRVTM+LPLTG QY+EKVTE C A W+
Sbjct: 257 FFMDIVTCEYEKFTRVTMVLPLTGIQYSEKVTEGCKAAWE 138
>gb|DR069101.1|DR069101 RTDK1_4_H11.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_4_H11_A029 5', mRNA sequence
Length = 774
Score = 152 bits (327), Expect = 1e-036
Identities = 64/100 (64%), Positives = 74/100 (74%)
Frame = +1 / -2
Query: 106 RPPGSAGSHFLGGAGVRGLEIGGNFIKFTAIGVYLEDAAVPALAKKWGGKTADELASDAA 285
RPPG+ LGGAGVR L I G FI FTAIGVY++ A VP LA KW GKT +EL A
Sbjct: 770 RPPGATKDLVLGGAGVRQLPIEGKFITFTAIGVYIDRAIVPHLASKWKGKTIEELNDSAE 591
Query: 286 FFRDVVTGDFEKFTRVTMILPLTGEQYAEKVTENCVAFWK 405
FF D+VT ++EKFTRVTM+LPLTG QY+EKVTE C A W+
Sbjct: 590 FFMDIVTCEYEKFTRVTMVLPLTGIQYSEKVTEGCKAAWE 471
>gb|DR091916.1|DR091916 RTAL1_24_G04.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_24_G04_A029 5', mRNA sequence
Length = 800
Score = 152 bits (327), Expect = 1e-036
Identities = 64/100 (64%), Positives = 74/100 (74%)
Frame = +1 / -3
Query: 106 RPPGSAGSHFLGGAGVRGLEIGGNFIKFTAIGVYLEDAAVPALAKKWGGKTADELASDAA 285
RPPG+ LGGAGVR L I G FI FTAIGVY++ A VP LA KW GKT +EL A
Sbjct: 768 RPPGATKDLVLGGAGVRQLPIEGKFITFTAIGVYIDRAIVPHLASKWKGKTIEELNDSAE 589
Query: 286 FFRDVVTGDFEKFTRVTMILPLTGEQYAEKVTENCVAFWK 405
FF D+VT ++EKFTRVTM+LPLTG QY+EKVTE C A W+
Sbjct: 588 FFMDIVTCEYEKFTRVTMVLPLTGIQYSEKVTEGCKAAWE 469
>gb|DR091845.1|DR091845 RTAL1_24_G04.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_24_G04_A029 3', mRNA sequence
Length = 770
Score = 133 bits (285), Expect = 6e-031
Identities = 56/99 (56%), Positives = 69/99 (69%)
Frame = +1 / -1
Query: 109 PPGSAGSHFLGGAGVRGLEIGGNFIKFTAIGVYLEDAAVPALAKKWGGKTADELASDAAF 288
P GS+ LGGAGVRGL I G F+ FTAIGVY+E + +P L KW TA+EL + F
Sbjct: 647 PMGSSKELVLGGAGVRGLVIEGKFVTFTAIGVYIEKSIIPHLGFKWKHSTAEELVNRVDF 468
Query: 289 FRDVVTGDFEKFTRVTMILPLTGEQYAEKVTENCVAFWK 405
F D+VT +EKF RVT+ILPL+G QY+EKV E C A W+
Sbjct: 467 FMDIVTCPYEKFVRVTLILPLSGAQYSEKVGEGCKAAWE 351
>gb|DR078329.1|DR078329 RTFEPL1_3_H07.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_3_H07_A029 3', mRNA sequence
Length = 737
Score = 129 bits (277), Expect = 8e-030
Identities = 54/84 (64%), Positives = 63/84 (75%)
Frame = +1 / +2
Query: 154 RGLEIGGNFIKFTAIGVYLEDAAVPALAKKWGGKTADELASDAAFFRDVVTGDFEKFTRV 333
R L I G FI FTAIGVY++ A VP LA KW GKT +EL A FF D+VT ++EKFTRV
Sbjct: 2 RQLPIEGKFITFTAIGVYIDRAIVPHLASKWKGKTIEELNDSAEFFMDIVTCEYEKFTRV 181
Query: 334 TMILPLTGEQYAEKVTENCVAFWK 405
TM+LPLTG QY+EKVTE C A W+
Sbjct: 182 TMVLPLTGIQYSEKVTEGCKAAWE 253
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 111,768,375
Number of Sequences: 355925
Number of extensions: 878050
Number of successful extensions: 27186
Number of sequences better than 1.0e-020: 14
length of database: 72,425,745
effective HSP length: 50
effective length of database: 54,629,495
effective search space used: 4643507075
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)