TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3345642.2.1
(600 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR112556.1|DR112556 RTS1_29_B07.b1_A029 Roots minus sulf... 316 7e-086
gb|CO364079.1|CO364079 RTK1_13_C05.g1_A029 Roots minus pota... 310 4e-084
gb|DR686620.1|DR686620 EST1076698 Normalized pine embryo li... 241 3e-063
gb|DR014696.1|DR014696 HEAT1_51_C03.b1_A029 Root at 37 C fo... 229 1e-059
gb|DR109571.1|DR109571 RTS1_3_E05.b1_A029 Roots minus sulfu... 228 2e-059
gb|DR689244.1|DR689244 EST1079330 Normalized pine embryo li... 228 2e-059
gb|DT635347.1|DT635347 EST1150278 Normalized pine embryo li... 228 2e-059
gb|AW289781.1|AW289781 NXNV006B06F Nsf Xylem Normal wood Ve... 226 8e-059
gb|CD028366.1|CD028366 NXNV006B06 Nsf Xylem Normal wood Ver... 226 8e-059
gb|DR169090.1|DR169090 RTPHOS1_30_A06.b1_A029 Roots minus p... 216 8e-056
gb|CF396558.1|CF396558 RTDS2_22_C09.g1_A021 Drought-stresse... 212 1e-054
gb|DR078574.1|DR078574 RTFEPL1_5_C09.g1_A029 Roots plus add... 212 1e-054
gb|BQ107024.1|BQ107024 NXLV085_F11_F NXLV (Nsf Xylem Late w... 157 6e-054
gb|CX713265.1|CX713265 RTPQ1_8_B07.b1_A032 Roots treated wi... 200 6e-051
gb|DT633664.1|DT633664 EST1148595 Normalized pine embryo li... 166 1e-048
gb|CX651405.1|CX651405 COLD1_52_D12.b1_A029 Root cold Pinus... 115 2e-045
gb|DR744023.1|DR744023 RTCU1_19_F03.g1_A029 Roots plus adde... 115 4e-044
gb|BI202957.1|BI202957 NXPV_093_C03_F NXPV (Nsf Xylem Plani... 146 1e-034
gb|DR053011.1|DR053011 RTCA1_8_A01.g1_A029 Roots minus calc... 144 7e-034
gb|DR161477.1|DR161477 RTFE1_12_B06.b1_A029 Roots minus iro... 140 7e-033
gb|AI812705.1|AI812705 18B3 Pine Lambda Zap Xylem library P... 105 1e-032
gb|BX249940.1|BX249940 BX249940 Pinus pinaster differenciat... 134 4e-031
gb|BX250554.1|BX250554 BX250554 Pinus pinaster differenciat... 116 2e-026
gb|DR015694.1|DR015694 STRS1_5_C07.b1_A034 Shoot tip pitch ... 113 9e-025
gb|DR015777.1|DR015777 STRS1_5_C07.g1_A034 Shoot tip pitch ... 112 2e-024
gb|DT633602.1|DT633602 EST1148533 Normalized pine embryo li... 97 3e-021
>gb|DR112556.1|DR112556 RTS1_29_B07.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_29_B07_A029 3', mRNA sequence
Length = 688
Score = 316 bits (685), Expect = 7e-086
Identities = 116/157 (73%), Positives = 135/157 (85%)
Frame = +1 / +2
Query: 7 GNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLY 186
GNV GAVETCLE+FHRYHKYLNFSHP I S DP CGWAFGMN+FDL+AW+ AN TS Y
Sbjct: 176 GNVNGAVETCLETFHRYHKYLNFSHPKIHSHFDPEACGWAFGMNVFDLVAWKNANVTSRY 355
Query: 187 HYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHY 366
HYWQEQN D LW+ GTLP GLL+FYGL EPLDRRWHVLGLGYD++ID++LIES AV+H+
Sbjct: 356 HYWQEQNVDRTLWKLGTLPPGLLSFYGLTEPLDRRWHVLGLGYDLNIDEQLIESGAVIHF 535
Query: 367 NGNMKPWLKLAIRRYKYIWERYVNISHPYVRECMLH* 477
NGNMKPWLKLA++RYK IWE YVN SHP +++C+ +*
Sbjct: 536 NGNMKPWLKLAMKRYKAIWEMYVNYSHPLLQQCITY* 646
Score = 200 bits (432), Expect = 6e-051
Identities = 94/154 (61%), Positives = 103/154 (66%)
Frame = -2 / -2
Query: 467 IHSLTYGCEIFTYRSHIYL*RRIASFSQGFMFPL*CTTAALSIRRSSMSTSYPRPKTCHL 288
+H + GCE FTY SHI L IASF+QGF+ PL C TA LSI SSM S P+P TCH
Sbjct: 636 MHCCSNGCE*FTYISHIALYLFIASFNQGFILPLKCITAPLSISCSSMFRS*PKPNTCHR 457
Query: 287 RSRGSIRP*NVKRPAGRVPVLQSNRSEFCSCQ**YNDVAFAFLQAIKSKMFIPKAHPQVC 108
RS GS+RP*N P G VP QS RS FCSCQ**Y V AF A +S FIPKAHPQ
Sbjct: 456 RSSGSVRP*NESNPGGNVPSFQSVRSTFCSCQ**YRLVTLAFFHATRSNTFIPKAHPQAS 277
Query: 107 GSILELIVGCEKFRYL*YR*NDSKQVSTAPMTLP 6
GS E I+G EK RYL YR N S+QVSTAP T P
Sbjct: 276 GSK*EWILG*EKLRYLWYRWNVSRQVSTAPFTFP 175
Score = 110 bits (234), Expect = 1e-023
Identities = 55/141 (39%), Positives = 89/141 (63%)
Frame = -1 / -1
Query: 447 V*DIHIPFPYILVTANSQLQPGFHVSIIVHNSSTLNQTIIYVYIIPETQDMPSAV*GLHQ 268
V* IH+ FPY LV + LQPG H++I ++N TLN+ I V II MPS + +
Sbjct: 616 V*VIHVHFPYSLVPFHC*LQPGLHITIKMYNCPTLNKLFINV*IIT*A*YMPSTIQWFSE 437
Query: 267 AIKCQKACRKSSCSPEQ*VRILLLPIMIQ*CGVCLPPSYQVKNVHSKSPSTSMWINLGAD 88
AI+ +++ R+ + PE + ILLLP+MI + + P +++K++H K PSTS+ I + D
Sbjct: 436 AIE*KQSWRQCT*LPECSIHILLLPVMISASYIGILPCHKIKHIHPKGPSTSLRIEVRMD 257
Query: 87 SRMRKI*ILVIPMKRL*TSFH 25
R+R++ I ++ ++ L TSF+
Sbjct: 256 LRVREVEIFMVSVECLKTSFN 194
>gb|CO364079.1|CO364079 RTK1_13_C05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_13_C05_A029 5', mRNA sequence
Length = 912
Score = 310 bits (672), Expect = 4e-084
Identities = 114/157 (72%), Positives = 131/157 (83%)
Frame = +1 / -1
Query: 7 GNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLY 186
GNV GAVETCLE+FHRYHKYLNFSHP I S D CGWAFGMN+FDL+AW+K N TS Y
Sbjct: 651 GNVNGAVETCLETFHRYHKYLNFSHPMIRSHFDADACGWAFGMNVFDLVAWKKLNVTSRY 472
Query: 187 HYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHY 366
HYWQEQN D LW+ GTLP GLLTFYGL EPLDRRWH+LGLGYD ++D +LIES AV+HY
Sbjct: 471 HYWQEQNVDRTLWKLGTLPPGLLTFYGLTEPLDRRWHILGLGYDPNVDMQLIESGAVLHY 292
Query: 367 NGNMKPWLKLAIRRYKYIWERYVNISHPYVRECMLH* 477
NGNMKPWLKLA+ RYK WE+YVN HP++++C +H*
Sbjct: 291 NGNMKPWLKLAMNRYKSFWEKYVNYLHPFLQKCNIH* 181
Score = 178 bits (383), Expect = 3e-044
Identities = 86/154 (55%), Positives = 97/154 (62%)
Frame = -2 / +2
Query: 467 IHSLTYGCEIFTYRSHIYL*RRIASFSQGFMFPL*CTTAALSIRRSSMSTSYPRPKTCHL 288
+H GC+ FTY S L IASF+ GFMFPL*C TA LSI S S P P C
Sbjct: 191 LHFCRNGCK*FTYFSQKDLYLFIASFNHGFMFPL*CKTAPLSISCMSTFGS*PSPSICQR 370
Query: 287 RSRGSIRP*NVKRPAGRVPVLQSNRSEFCSCQ**YNDVAFAFLQAIKSKMFIPKAHPQVC 108
RS GS+RP* V +P G+VP QS S FCSCQ**Y V +F A +S FIPKAHP
Sbjct: 371 RSSGSVRP*KVSKPGGKVPSFQSVLSTFCSCQ**YRLVTLSFFHATRSNTFIPKAHPHAS 550
Query: 107 GSILELIVGCEKFRYL*YR*NDSKQVSTAPMTLP 6
S E I+G EK RYL YR*N S+QVSTAP+T P
Sbjct: 551 ASK*ERIMGWEKLRYLWYR*NVSRQVSTAPLTFP 652
Score = 111 bits (237), Expect = 4e-024
Identities = 58/144 (40%), Positives = 86/144 (59%)
Frame = -1 / +1
Query: 438 IHIPFPYILVTANSQLQPGFHVSIIVHNSSTLNQTIIYVYIIPETQDMPSAV*GLHQAIK 259
IHI FP V + Q QP FHV II+ NSST Q ++++II MP+ + L +AI+
Sbjct: 220 IHILFPKRFVPVHCQFQPWFHVPIIMQNSSTFYQLHVHIWIIT*P*YMPTTIKWLSEAIE 399
Query: 258 CQKACRKSSCSPEQ*VRILLLPIMIQ*CGVCLPPSYQVKNVHSKSPSTSMWINLGADSRM 79
++A R+S P+ + ILLLPI+I C + L P +VK++H K PST + I + + +
Sbjct: 400 GKQAWRQSPKFPKCPINILLLPIVISACNIELLPCNKVKHIHPKGPSTRICIKVRTNHGV 579
Query: 78 RKI*ILVIPMKRL*TSFHCSNDIA 7
+I I V+P+K L SF DI+
Sbjct: 580 GEIEIFVVPVKCLKASFDRPIDIS 651
>gb|DR686620.1|DR686620 EST1076698 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABI03 3' end, mRNA sequence
Length = 866
Score = 241 bits (521), Expect = 3e-063
Identities = 87/143 (60%), Positives = 110/143 (76%)
Frame = +1 / +2
Query: 7 GNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLY 186
G V GAVETC ESFHR+ KYLNFS+P I+ DP+ CGWA+GMN+FDL W+K + T +Y
Sbjct: 434 GKVNGAVETCGESFHRFDKYLNFSNPHIARHFDPNACGWAYGMNVFDLKEWKKQDITGIY 613
Query: 187 HYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHY 366
H WQ N D +LW+ GTLP GL+TFYGL PLD+ WHVLGLGY+ +D I++AAVVHY
Sbjct: 614 HKWQNMNEDRVLWKLGTLPPGLITFYGLTHPLDKSWHVLGLGYNPSVDRLEIDNAAVVHY 793
Query: 367 NGNMKPWLKLAIRRYKYIWERYV 435
NGNMKPWL+LA+ +Y+ W +Y+
Sbjct: 794 NGNMKPWLELAMTKYRPYWTKYI 862
Score = 135 bits (290), Expect = 2e-031
Identities = 67/132 (50%), Positives = 79/132 (59%)
Frame = -2 / -3
Query: 401 IASFSQGFMFPL*CTTAALSIRRSSMSTSYPRPKTCHLRSRGSIRP*NVKRPAGRVPVLQ 222
IAS +QGFMFPL* TTAALSI + S YP+P TC S+G ++P*NV P G VP
Sbjct: 828 IASSNQGFMFPL**TTAALSISKRSTLGLYPKPSTCQDLSKGWVKP*NVINPGGSVPSFH 649
Query: 221 SNRSEFCSCQ**YNDVAFAFLQAIKSKMFIPKAHPQVCGSILELIVGCEKFRYL*YR*ND 42
+ S F C *Y V F +++S FIP A PQ GS + G EK RYL R*
Sbjct: 648 NTLSSFMFCHL*YIPVISCFFHSLRSNTFIPYAQPQALGSKCLAMCGLEKLRYLSNR*KL 469
Query: 41 SKQVSTAPMTLP 6
S QVSTAP+T P
Sbjct: 468 SPQVSTAPLTFP 433
>gb|DR014696.1|DR014696 HEAT1_51_C03.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_51_C03_A029 3', mRNA sequence
Length = 914
Score = 229 bits (495), Expect = 1e-059
Identities = 83/154 (53%), Positives = 107/154 (69%)
Frame = +1 / +2
Query: 4 RGNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSL 183
+G V GAVETC SFHRY KY+NFSHP I ++ +P CGWA+GMN F L AWR+ T
Sbjct: 29 KGKVNGAVETCFGSFHRYDKYMNFSHPLIKARFNPKACGWAYGMNFFHLDAWRREKCTEE 208
Query: 184 YHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVH 363
YHYWQ N + LW+ GTLP GL+T+Y +PLD+ WHVLGLGY+ I I +AAVVH
Sbjct: 209 YHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVH 388
Query: 364 YNGNMKPWLKLAIRRYKYIWERYVNISHPYVREC 465
+NGNMKPWL + + +Y+ W +YV+ +V+ C
Sbjct: 389 FNGNMKPWLDIGMNQYRDTWTKYVDYDMEFVQMC 490
Score = 123 bits (264), Expect = 8e-028
Identities = 67/128 (52%), Positives = 76/128 (59%)
Frame = -2 / -3
Query: 389 SQGFMFPL*CTTAALSIRRSSMSTSYPRPKTCHLRSRGSIRP*NVKRPAGRVPVLQSNRS 210
S GF+FPL TTAAL I + YPRP+TC SRG + * V RP G VP + R
Sbjct: 414 SHGFIFPLK*TTAALRISSILILGLYPRPRTCQDLSRGFVVL**VIRPGGNVPSFHNVRF 235
Query: 209 EFCSCQ**YNDVAFAFLQAIKSKMFIPKAHPQVCGSILELIVGCEKFRYL*YR*NDSKQV 30
F CQ**Y+ V F+ L A K K FIP A PQ G L LI G EKF YL R N+ K V
Sbjct: 234 SFRFCQ**YSSVHFSLLHASKWKKFIP*AQPQALGLNLALIRG*EKFIYLS*RWNEPKHV 55
Query: 29 STAPMTLP 6
STAP+T P
Sbjct: 54 STAPLTFP 31
>gb|DR109571.1|DR109571 RTS1_3_E05.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_3_E05_A029 3', mRNA sequence
Length = 820
Score = 228 bits (493), Expect = 2e-059
Identities = 83/153 (54%), Positives = 106/153 (69%)
Frame = +1 / +3
Query: 7 GNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLY 186
G V GAVETC SFHRY KY+NFSHP I ++ +P CGWA+GMN F L AWR+ T Y
Sbjct: 168 GKVNGAVETCFGSFHRYDKYMNFSHPLIKARFNPKACGWAYGMNFFHLDAWRREKCTEEY 347
Query: 187 HYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHY 366
HYWQ N + LW+ GTLP GL+T+Y +PLD+ WHVLGLGY+ I I +AAVVH+
Sbjct: 348 HYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHF 527
Query: 367 NGNMKPWLKLAIRRYKYIWERYVNISHPYVREC 465
NGNMKPWL + + +Y+ W +YV+ +V+ C
Sbjct: 528 NGNMKPWLDIGMNQYRDTWTKYVDYDMEFVQMC 626
Score = 123 bits (264), Expect = 8e-028
Identities = 67/128 (52%), Positives = 76/128 (59%)
Frame = -2 / -1
Query: 389 SQGFMFPL*CTTAALSIRRSSMSTSYPRPKTCHLRSRGSIRP*NVKRPAGRVPVLQSNRS 210
S GF+FPL TTAAL I + YPRP+TC SRG + * V RP G VP + R
Sbjct: 550 SHGFIFPLK*TTAALRISSILILGLYPRPRTCQDLSRGFVVL**VIRPGGNVPSFHNVRF 371
Query: 209 EFCSCQ**YNDVAFAFLQAIKSKMFIPKAHPQVCGSILELIVGCEKFRYL*YR*NDSKQV 30
F CQ**Y+ V F+ L A K K FIP A PQ G L LI G EKF YL R N+ K V
Sbjct: 370 SFRFCQ**YSSVHFSLLHASKWKKFIP*AQPQALGLNLALIRG*EKFIYLS*RWNEPKHV 191
Query: 29 STAPMTLP 6
STAP+T P
Sbjct: 190 STAPLTFP 167
>gb|DR689244.1|DR689244 EST1079330 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACF91 3' end, mRNA sequence
Length = 854
Score = 228 bits (493), Expect = 2e-059
Identities = 83/153 (54%), Positives = 106/153 (69%)
Frame = +1 / +2
Query: 7 GNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLY 186
G V GAVETC SFHRY KY+NFSHP I ++ +P CGWA+GMN F L AWR+ T Y
Sbjct: 152 GKVNGAVETCFGSFHRYDKYMNFSHPLIKARFNPKACGWAYGMNFFHLDAWRREKCTEEY 331
Query: 187 HYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHY 366
HYWQ N + LW+ GTLP GL+T+Y +PLD+ WHVLGLGY+ I I +AAVVH+
Sbjct: 332 HYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHF 511
Query: 367 NGNMKPWLKLAIRRYKYIWERYVNISHPYVREC 465
NGNMKPWL + + +Y+ W +YV+ +V+ C
Sbjct: 512 NGNMKPWLDIGMNQYRDTWTKYVDYDMEFVQMC 610
Score = 123 bits (264), Expect = 8e-028
Identities = 67/128 (52%), Positives = 76/128 (59%)
Frame = -2 / -3
Query: 389 SQGFMFPL*CTTAALSIRRSSMSTSYPRPKTCHLRSRGSIRP*NVKRPAGRVPVLQSNRS 210
S GF+FPL TTAAL I + YPRP+TC SRG + * V RP G VP + R
Sbjct: 534 SHGFIFPLK*TTAALRISSILILGLYPRPRTCQDLSRGFVVL**VIRPGGNVPSFHNVRF 355
Query: 209 EFCSCQ**YNDVAFAFLQAIKSKMFIPKAHPQVCGSILELIVGCEKFRYL*YR*NDSKQV 30
F CQ**Y+ V F+ L A K K FIP A PQ G L LI G EKF YL R N+ K V
Sbjct: 354 SFRFCQ**YSSVHFSLLHASKWKKFIP*AQPQALGLNLALIRG*EKFIYLS*RWNEPKHV 175
Query: 29 STAPMTLP 6
STAP+T P
Sbjct: 174 STAPLTFP 151
>gb|DT635347.1|DT635347 EST1150278 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGF84 3' end, mRNA sequence
Length = 768
Score = 228 bits (493), Expect = 2e-059
Identities = 83/153 (54%), Positives = 106/153 (69%)
Frame = +1 / +1
Query: 7 GNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLY 186
G V GAVETC SFHRY KY+NFSHP I ++ +P CGWA+GMN F L AWR+ T Y
Sbjct: 160 GKVNGAVETCFGSFHRYDKYMNFSHPLIKARFNPKACGWAYGMNFFHLDAWRREKCTEEY 339
Query: 187 HYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHY 366
HYWQ N + LW+ GTLP GL+T+Y +PLD+ WHVLGLGY+ I I +AAVVH+
Sbjct: 340 HYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHF 519
Query: 367 NGNMKPWLKLAIRRYKYIWERYVNISHPYVREC 465
NGNMKPWL + + +Y+ W +YV+ +V+ C
Sbjct: 520 NGNMKPWLDIGMNQYRDTWTKYVDYDMEFVQMC 618
Score = 123 bits (264), Expect = 8e-028
Identities = 67/128 (52%), Positives = 76/128 (59%)
Frame = -2 / -2
Query: 389 SQGFMFPL*CTTAALSIRRSSMSTSYPRPKTCHLRSRGSIRP*NVKRPAGRVPVLQSNRS 210
S GF+FPL TTAAL I + YPRP+TC SRG + * V RP G VP + R
Sbjct: 542 SHGFIFPLK*TTAALRISSILILGLYPRPRTCQDLSRGFVVL**VIRPGGNVPSFHNVRF 363
Query: 209 EFCSCQ**YNDVAFAFLQAIKSKMFIPKAHPQVCGSILELIVGCEKFRYL*YR*NDSKQV 30
F CQ**Y+ V F+ L A K K FIP A PQ G L LI G EKF YL R N+ K V
Sbjct: 362 SFRFCQ**YSSVHFSLLHASKWKKFIP*AQPQALGLNLALIRG*EKFIYLS*RWNEPKHV 183
Query: 29 STAPMTLP 6
STAP+T P
Sbjct: 182 STAPLTFP 159
>gb|AW289781.1|AW289781 NXNV006B06F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006B06 5', mRNA sequence
Length = 465
Score = 226 bits (489), Expect = 8e-059
Identities = 84/138 (60%), Positives = 102/138 (73%)
Frame = +1 / +2
Query: 22 AVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLYHYWQE 201
AVETC ESFHR+ KYLNFS+ I+ DP+ CGWA+GMNIFDL WRK T +YH WQ
Sbjct: 2 AVETCGESFHRFDKYLNFSNVLIAKNFDPNACGWAYGMNIFDLEEWRKQGITGIYHQWQN 181
Query: 202 QNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMK 381
N D LW+ GTLP GL+TFY L LD+ WHVLGLGY+ ++D IE AAV+HYNGNMK
Sbjct: 182 LNKDRQLWKLGTLPPGLITFYHLTFVLDKSWHVLGLGYNPNVDSTEIERAAVIHYNGNMK 361
Query: 382 PWLKLAIRRYKYIWERYV 435
PWL +AI +Y++ W +YV
Sbjct: 362 PWLDIAIPKYRHYWTKYV 415
Score = 104 bits (222), Expect = 5e-022
Identities = 45/138 (32%), Positives = 80/138 (57%)
Frame = -1 / -3
Query: 435 HIPFPYILVTANSQLQPGFHVSIIVHNSSTLNQTIIYVYIIPETQDMPSAV*GLHQAIKC 256
H+ P + V + ++P FH+++++++ + N + I + +I +TQ+MP + Q I+
Sbjct: 415 HVLSPVMSVLRDGYIEPWFHIAVVMYHCCSFNFS*INIRVITKTQNMPRFIQDECQVIES 236
Query: 255 QKACRKSSCSPEQ*VRILLLPIMIQ*CGVCLPPSYQVKNVHSKSPSTSMWINLGADSRMR 76
+ R+ + P + + +LP+M+ C PP +Q+K +HS PSTS+WI + + +R
Sbjct: 235 DQPRRQGTQLP*LSIFV*ILPLMVNPCYSLFPPFFQIKYIHSICPSTSIWIKVLCNEYVR 56
Query: 75 KI*ILVIPMKRL*TSFHC 22
KI I V PMK T FHC
Sbjct: 55 KIEIFVKPMKAFSTGFHC 2
>gb|CD028366.1|CD028366 NXNV006B06 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006B06 5' similar to Arabidopsis thaliana sequence
At3g61130 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 465
Score = 226 bits (489), Expect = 8e-059
Identities = 84/138 (60%), Positives = 102/138 (73%)
Frame = +1 / +2
Query: 22 AVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLYHYWQE 201
AVETC ESFHR+ KYLNFS+ I+ DP+ CGWA+GMNIFDL WRK T +YH WQ
Sbjct: 2 AVETCGESFHRFDKYLNFSNVLIAKNFDPNACGWAYGMNIFDLEEWRKQGITGIYHQWQN 181
Query: 202 QNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMK 381
N D LW+ GTLP GL+TFY L LD+ WHVLGLGY+ ++D IE AAV+HYNGNMK
Sbjct: 182 LNKDRQLWKLGTLPPGLITFYHLTFVLDKSWHVLGLGYNPNVDSTEIERAAVIHYNGNMK 361
Query: 382 PWLKLAIRRYKYIWERYV 435
PWL +AI +Y++ W +YV
Sbjct: 362 PWLDIAIPKYRHYWTKYV 415
Score = 104 bits (222), Expect = 5e-022
Identities = 45/138 (32%), Positives = 80/138 (57%)
Frame = -1 / -3
Query: 435 HIPFPYILVTANSQLQPGFHVSIIVHNSSTLNQTIIYVYIIPETQDMPSAV*GLHQAIKC 256
H+ P + V + ++P FH+++++++ + N + I + +I +TQ+MP + Q I+
Sbjct: 415 HVLSPVMSVLRDGYIEPWFHIAVVMYHCCSFNFS*INIRVITKTQNMPRFIQDECQVIES 236
Query: 255 QKACRKSSCSPEQ*VRILLLPIMIQ*CGVCLPPSYQVKNVHSKSPSTSMWINLGADSRMR 76
+ R+ + P + + +LP+M+ C PP +Q+K +HS PSTS+WI + + +R
Sbjct: 235 DQPRRQGTQLP*LSIFV*ILPLMVNPCYSLFPPFFQIKYIHSICPSTSIWIKVLCNEYVR 56
Query: 75 KI*ILVIPMKRL*TSFHC 22
KI I V PMK T FHC
Sbjct: 55 KIEIFVKPMKAFSTGFHC 2
>gb|DR169090.1|DR169090 RTPHOS1_30_A06.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_30_A06_A029 3', mRNA sequence
Length = 710
Score = 216 bits (467), Expect = 8e-056
Identities = 77/145 (53%), Positives = 100/145 (68%)
Frame = +1 / +3
Query: 31 TCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLYHYWQEQNS 210
TC SFHRY KY+NFSHP I ++ +P CGWA+GMN F L AWR+ T YHYWQ N
Sbjct: 3 TCFGSFHRYDKYMNFSHPLIKARFNPKACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNE 182
Query: 211 DLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKPWL 390
+ LW+ GTLP GL+T+Y +PLD+ WHVLGLGY+ I I +AAVVH+NGNMKPWL
Sbjct: 183 NRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWL 362
Query: 391 KLAIRRYKYIWERYVNISHPYVREC 465
+ + +Y+ W +YV+ +V+ C
Sbjct: 363 DIGMNQYRDTWTKYVDYDMEFVQMC 437
Score = 108 bits (230), Expect = 4e-023
Identities = 61/120 (50%), Positives = 69/120 (57%)
Frame = -2 / -2
Query: 389 SQGFMFPL*CTTAALSIRRSSMSTSYPRPKTCHLRSRGSIRP*NVKRPAGRVPVLQSNRS 210
S GF+FPL TTAAL I + YPRP+TC SRG + * V RP G VP + R
Sbjct: 361 SHGFIFPLK*TTAALRISSILILGLYPRPRTCQDLSRGFVVL**VIRPGGNVPSFHNVRF 182
Query: 209 EFCSCQ**YNDVAFAFLQAIKSKMFIPKAHPQVCGSILELIVGCEKFRYL*YR*NDSKQV 30
F CQ**Y+ V F+ L A K K FIP A PQ G L LI G EKF YL R N+ K V
Sbjct: 181 SFRFCQ**YSSVHFSLLHASKWKKFIP*AQPQALGLNLALIRG*EKFIYLS*RWNEPKHV 2
>gb|CF396558.1|CF396558 RTDS2_22_C09.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_22_C09_A021 5', mRNA sequence
Length = 797
Score = 212 bits (458), Expect = 1e-054
Identities = 72/133 (54%), Positives = 100/133 (75%)
Frame = +1 / -3
Query: 76 SHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLYHYWQEQNSDLLLWRTGTLPAGLL 255
S+P I+ DP+ CGWA+GMN+FDL W+K + T +YH WQ N D +LW+ GTLP GL+
Sbjct: 795 SNPHIARHFDPNACGWAYGMNVFDLKEWKKQDITGIYHKWQNMNEDRVLWKLGTLPPGLI 616
Query: 256 TFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERYV 435
TFYGL PLD+ WHVLGLGY+ +D I++AAVVHYNGNMKPWL+LA+ +Y+ W +Y+
Sbjct: 615 TFYGLTHPLDKSWHVLGLGYNPSVDRLEIDNAAVVHYNGNMKPWLELAMTKYRPYWTKYI 436
Query: 436 NISHPYVRECMLH 474
HP++++C ++
Sbjct: 435 KYDHPFLQQCNIN 397
Score = 106 bits (227), Expect = 1e-022
Identities = 52/109 (47%), Positives = 63/109 (57%)
Frame = -2 / +2
Query: 401 IASFSQGFMFPL*CTTAALSIRRSSMSTSYPRPKTCHLRSRGSIRP*NVKRPAGRVPVLQ 222
IAS +QGFMFPL* TTAALSI + S YP+P TC S+G ++P*NV P G VP
Sbjct: 470 IASSNQGFMFPL**TTAALSISKRSTLGLYPKPSTCQDLSKGWVKP*NVINPGGSVPSFH 649
Query: 221 SNRSEFCSCQ**YNDVAFAFLQAIKSKMFIPKAHPQVCGSILELIVGCE 75
+ S F C *Y V F +++S FIP A PQ GS + G E
Sbjct: 650 NTLSSFMFCHL*YIPVISCFFHSLRSNTFIPYAQPQALGSKCLAMCGLE 796
>gb|DR078574.1|DR078574 RTFEPL1_5_C09.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_5_C09_A029 5', mRNA sequence
Length = 822
Score = 212 bits (458), Expect = 1e-054
Identities = 77/110 (70%), Positives = 92/110 (83%)
Frame = +1 / -3
Query: 148 LIAWRKANATSLYHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDI 327
L+AW+K N TS YHYWQEQN D LW+ GTLP GLLTFYGL EPLDRRWH+LGLGYD ++
Sbjct: 820 LVAWKKLNVTSRYHYWQEQNVDRTLWKLGTLPPGLLTFYGLTEPLDRRWHILGLGYDPNV 641
Query: 328 DDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERYVNISHPYVRECMLH* 477
D +LIES AV+HYNGNMKPWLKLA+ RYK WE+YVN HP++++C +H*
Sbjct: 640 DMQLIESGAVLHYNGNMKPWLKLAMNRYKSFWEKYVNYLHPFLQKCNIH* 491
Score = 114 bits (244), Expect = 5e-025
Identities = 56/107 (52%), Positives = 64/107 (59%)
Frame = -2 / +3
Query: 467 IHSLTYGCEIFTYRSHIYL*RRIASFSQGFMFPL*CTTAALSIRRSSMSTSYPRPKTCHL 288
+H GC+ FTY S L IASF+ GFMFPL*C TA LSI S S P P C
Sbjct: 501 LHFCRNGCK*FTYFSQKDLYLFIASFNHGFMFPL*CKTAPLSISCMSTFGS*PSPSICQR 680
Query: 287 RSRGSIRP*NVKRPAGRVPVLQSNRSEFCSCQ**YNDVAFAFLQAIK 147
RS GS+RP* V +P G+VP QS S FCSCQ**Y V +F A +
Sbjct: 681 RSSGSVRP*KVSKPGGKVPSFQSVLSTFCSCQ**YRLVTLSFFHATR 821
>gb|BQ107024.1|BQ107024 NXLV085_F11_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV085_F11 5' similar to Arabidopsis thaliana
sequence At2g20807 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 732
Score = 157 bits (337), Expect(2) = 6e-054
Identities = 57/77 (74%), Positives = 65/77 (84%)
Frame = +1 / +2
Query: 118 GWAFGMNIFDLIAWRKANATSLYHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWH 297
GWAFGMN+FDL+AW+K N TS YHYWQEQN D LW+ GTLP GLLTFYGL EPLDRRWH
Sbjct: 452 GWAFGMNVFDLVAWKKLNVTSRYHYWQEQNVDRTLWKLGTLPPGLLTFYGLTEPLDRRWH 631
Query: 298 VLGLGYDVDIDDRLIES 348
+LGLGYD ++D +LI S
Sbjct: 632 ILGLGYDPNVDMQLIXS 682
Score = 90.0 bits (190), Expect(2) = 2e-026
Identities = 41/77 (53%), Positives = 46/77 (59%)
Frame = -2 / -1
Query: 347 LSIRRSSMSTSYPRPKTCHLRSRGSIRP*NVKRPAGRVPVLQSNRSEFCSCQ**YNDVAF 168
L I S S P P C RS GS+RP* V +P G+VP QS S FCSCQ**Y V
Sbjct: 681 LXISCMSTFGS*PSPSICQRRSSGSVRP*KVSKPGGKVPSFQSVLSTFCSCQ**YRLVTL 502
Query: 167 AFLQAIKSKMFIPKAHP 117
+F A +S FIPKAHP
Sbjct: 501 SFFHATRSNTFIPKAHP 451
Score = 73.9 bits (155), Expect(2) = 6e-054
Identities = 28/37 (75%), Positives = 29/37 (78%)
Frame = +1 / +1
Query: 7 GNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTC 117
GNV GAVETCLE+FHRYHKYLNFSHP I S D C
Sbjct: 340 GNVNGAVETCLETFHRYHKYLNFSHPMIRSHFDADAC 450
Score = 48.7 bits (100), Expect(2) = 2e-026
Identities = 23/37 (62%), Positives = 26/37 (70%)
Frame = -2 / -2
Query: 116 QVCGSILELIVGCEKFRYL*YR*NDSKQVSTAPMTLP 6
Q S E I+G EK RYL YR*N S+QVSTAP+T P
Sbjct: 449 QASASK*ERIMGWEKLRYLWYR*NVSRQVSTAPLTFP 339
>gb|CX713265.1|CX713265 RTPQ1_8_B07.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_8_B07_A032 3', mRNA sequence
Length = 702
Score = 200 bits (432), Expect = 6e-051
Identities = 71/137 (51%), Positives = 94/137 (68%)
Frame = +1 / +2
Query: 55 YHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLYHYWQEQNSDLLLWRTG 234
Y KY+NFSHP I ++ +P CGWA+GMN F L AWR+ T YHYWQ N + LW+ G
Sbjct: 2 YDKYMNFSHPLIKARFNPKACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLG 181
Query: 235 TLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKPWLKLAIRRYK 414
TLP GL+T+Y +PLD+ WHVLGLGY+ I I +AAVVH+NGNMKPWL + + +Y+
Sbjct: 182 TLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYR 361
Query: 415 YIWERYVNISHPYVREC 465
W +YV+ +V+ C
Sbjct: 362 DTWTKYVDYDMEFVQMC 412
Score = 104 bits (221), Expect = 7e-022
Identities = 57/110 (51%), Positives = 64/110 (58%)
Frame = -2 / -1
Query: 389 SQGFMFPL*CTTAALSIRRSSMSTSYPRPKTCHLRSRGSIRP*NVKRPAGRVPVLQSNRS 210
S GF+FPL TTAAL I + YPRP+TC SRG + * V RP G VP + R
Sbjct: 336 SHGFIFPLK*TTAALRISSILILGLYPRPRTCQDLSRGFVVL**VIRPGGNVPSFHNVRF 157
Query: 209 EFCSCQ**YNDVAFAFLQAIKSKMFIPKAHPQVCGSILELIVGCEKFRYL 60
F CQ**Y+ V F+ L A K K FIP A PQ G L LI G EKF YL
Sbjct: 156 SFRFCQ**YSSVHFSLLHASKWKKFIP*AQPQALGLNLALIRG*EKFIYL 7
>gb|DT633664.1|DT633664 EST1148595 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFX37 3' end, mRNA sequence
Length = 812
Score = 166 bits (357), Expect(2) = 1e-048
Identities = 60/100 (60%), Positives = 73/100 (73%)
Frame = +1 / +1
Query: 7 GNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLY 186
G V GAVETC ESFHR+ KYLNFS+P I+ DP+ CGWA+GMN+FDL W+K + T +Y
Sbjct: 442 GKVNGAVETCGESFHRFDKYLNFSNPHIARHFDPNACGWAYGMNVFDLKEWKKQDITGIY 621
Query: 187 HYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLG 306
H WQ N D +LW+ GTLP GL+TFYGL PLD+ W G
Sbjct: 622 HKWQNMNEDRVLWKLGTLPPGLITFYGLTHPLDKSWACAG 741
Score = 87.7 bits (185), Expect(2) = 1e-022
Identities = 43/93 (46%), Positives = 52/93 (55%)
Frame = -2 / -1
Query: 284 SRGSIRP*NVKRPAGRVPVLQSNRSEFCSCQ**YNDVAFAFLQAIKSKMFIPKAHPQVCG 105
S+G ++P*NV P G VP + S F C *Y V F +++S FIP A PQ G
Sbjct: 719 SKGWVKP*NVINPGGSVPSFHNTLSSFMFCHL*YIPVISCFFHSLRSNTFIPYAQPQALG 540
Query: 104 SILELIVGCEKFRYL*YR*NDSKQVSTAPMTLP 6
S + G EK RYL R* S QVSTAP+T P
Sbjct: 539 SKCLAMCGLEKLRYLSNR*KLSPQVSTAPLTFP 441
Score = 46.9 bits (96), Expect(2) = 1e-048
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +1 / +2
Query: 295 HVLGLGYDVDIDDRLIESAAVVHYNGN 375
HVLGLGY+ +D I++AAVVHYNGN
Sbjct: 731 HVLGLGYNPSVDRLEIDNAAVVHYNGN 811
Score = 38.6 bits (78), Expect(2) = 1e-022
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = -2 / -3
Query: 374 FPL*CTTAALSIRRSSMSTSYPRPKTC 294
FPL* TTAALSI + S YP+P TC
Sbjct: 810 FPL**TTAALSISKRSTLGLYPKPSTC 730
>gb|CX651405.1|CX651405 COLD1_52_D12.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_52_D12_A029 3', mRNA sequence
Length = 659
Score = 115 bits (246), Expect(3) = 2e-045
Identities = 41/87 (47%), Positives = 58/87 (66%)
Frame = +1 / +3
Query: 205 NSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKP 384
NS+L LWR GTLP L+ F GL+ P+D WH+LGLGY + ++SAAV+HYNG KP
Sbjct: 231 NSNLRLWRMGTLPPALIAFNGLVHPIDPSWHMLGLGYQPRTNLDSVQSAAVIHYNGRAKP 410
Query: 385 WLKLAIRRYKYIWERYVNISHPYVREC 465
WL +A + +W +YV+ S +++ C
Sbjct: 411 WLDIAFHELRPLWAKYVDFSDEFIKRC 491
Score = 85.8 bits (181), Expect(3) = 2e-045
Identities = 28/52 (53%), Positives = 35/52 (67%)
Frame = +1 / +3
Query: 52 RYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLYHYWQEQN 207
R+ Y NFSHP I++ DP C WA+GMNI DL AWR+ N YHYW ++N
Sbjct: 72 RFKNYFNFSHPLIANNFDPEQCAWAYGMNILDLQAWRRTNIKETYHYWLKKN 227
Score = 21.7 bits (41), Expect(3) = 2e-045
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +1 / +3
Query: 4 RGNVIGAVETC 36
+G V GAVETC
Sbjct: 9 QGKVNGAVETC 41
>gb|DR744023.1|DR744023 RTCU1_19_F03.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_19_F03_A029 5', mRNA sequence
Length = 764
Score = 115 bits (246), Expect(2) = 4e-044
Identities = 41/94 (43%), Positives = 58/94 (61%)
Frame = +1 / -2
Query: 184 YHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVH 363
Y + NS+L LWR GTLP L+ F G + P+D WH+LGLGY + D + AAV+H
Sbjct: 643 YWLKENLNSNLTLWRLGTLPPALIAFNGHVHPIDPSWHMLGLGYQPETDLNNVRKAAVIH 464
Query: 364 YNGNMKPWLKLAIRRYKYIWERYVNISHPYVREC 465
YNG KPWL +A + W +Y+N S+ +++ C
Sbjct: 463 YNGQAKPWLDIAFPELRPFWTKYINYSNEFIKNC 362
Score = 82.6 bits (174), Expect(2) = 4e-044
Identities = 28/46 (60%), Positives = 32/46 (69%)
Frame = +1 / -2
Query: 70 NFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLYHYWQEQN 207
NFSHP IS +P C WA+GMNIFDL AWRK N YHYW ++N
Sbjct: 763 NFSHPLISKSFNPEQCAWAYGMNIFDLQAWRKTNIRETYHYWLKEN 626
>gb|BI202957.1|BI202957 NXPV_093_C03_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_093_C03 5' similar to Arabidopsis
thaliana sequence At3g25140 glycosyl transferase,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 326
Score = 146 bits (314), Expect = 1e-034
Identities = 53/103 (51%), Positives = 68/103 (66%)
Frame = +1 / +1
Query: 124 AFGMNIFDLIAWRKANATSLYHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVL 303
A+GMN F L AWR+ T YHYWQ N + LW+ GTLP GL+T+Y +PLD+ WHVL
Sbjct: 1 AYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVL 180
Query: 304 GLGYDVDIDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERY 432
GLGY+ I I +A V H+NGNMKPWL + +Y+ W +Y
Sbjct: 181 GLGYNPSISMDEIRNAXVXHFNGNMKPWLDXXMNQYRDTWTKY 309
>gb|DR053011.1|DR053011 RTCA1_8_A01.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_8_A01_A029 5', mRNA sequence
Length = 802
Score = 144 bits (308), Expect = 7e-034
Identities = 51/86 (59%), Positives = 61/86 (70%)
Frame = +1 / +3
Query: 7 GNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLY 186
G V GAVETC SFHRY KY+NFSHP I ++ +P CGWA+GMN F L AWR+ T Y
Sbjct: 540 GKVNGAVETCFGSFHRYDKYMNFSHPLIKARFNPKACGWAYGMNFFHLDAWRREKCTEEY 719
Query: 187 HYWQEQNSDLLLWRTGTLPAGLLTFY 264
HYWQ N + LW+ GTLP GL+T+Y
Sbjct: 720 HYWQNLNENRTLWKLGTLPPGLITYY 797
>gb|DR161477.1|DR161477 RTFE1_12_B06.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_12_B06_A029 3', mRNA sequence
Length = 482
Score = 140 bits (301), Expect = 7e-033
Identities = 50/85 (58%), Positives = 60/85 (70%)
Frame = +1 / -2
Query: 7 GNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLY 186
G V GAVETC SFHRY KY+NFSHP I ++ +P CGWA+GMN F L AWR+ T Y
Sbjct: 256 GKVNGAVETCFGSFHRYDKYMNFSHPLIKARFNPKACGWAYGMNFFHLDAWRREKCTEEY 77
Query: 187 HYWQEQNSDLLLWRTGTLPAGLLTF 261
HYWQ N + LW+ GTLP GL+T+
Sbjct: 76 HYWQNLNENRTLWKLGTLPPGLITY 2
>gb|AI812705.1|AI812705 18B3 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 522
Score = 105 bits (225), Expect(3) = 1e-032
Identities = 40/88 (45%), Positives = 56/88 (63%)
Frame = +1 / +3
Query: 202 QNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMK 381
QN + WR GTLPA L+TFY + L+ W +GLG+D ID IE + V+HYNGN+K
Sbjct: 195 QNRYNIPWRFGTLPASLITFYNMTHRLEDSWLSVGLGHDFGIDQLDIEKSPVLHYNGNLK 374
Query: 382 PWLKLAIRRYKYIWERYVNISHPYVREC 465
PWL++ I +YK W +Y+ ++ EC
Sbjct: 375 PWLEIGINKYKPYWAKYLKQEGQFMLEC 458
Score = 43.2 bits (88), Expect(3) = 1e-032
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1 / +3
Query: 103 DPHTCGWAFGMNIFDLIAWRKANATSLYHYW 195
D + C W G+NI DL WRK + T +Y W
Sbjct: 93 DGNACAWMSGLNIIDLQQWRKQDLTKVYRRW 185
Score = 28.6 bits (56), Expect(3) = 1e-032
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1 / +3
Query: 13 VIGAVETCLESFHRYHKYLNFS 78
V GA+E C FH KYLN S
Sbjct: 6 VNGAMEICEVRFHHLRKYLNSS 71
>gb|BX249940.1|BX249940 BX249940 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP030E08, mRNA sequence
Length = 629
Score = 134 bits (288), Expect = 4e-031
Identities = 47/94 (50%), Positives = 65/94 (69%)
Frame = +1 / -1
Query: 184 YHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVH 363
YHYWQ N + LW+ GTLP GL+T+Y +PLD+ WHVLGLGY+ I I +AAVVH
Sbjct: 629 YHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVH 450
Query: 364 YNGNMKPWLKLAIRRYKYIWERYVNISHPYVREC 465
+NGNMKPWL + + +Y+ W +YV+ +++ C
Sbjct: 449 FNGNMKPWLDIGMNQYRDTWTKYVDYDMEFIQMC 348
>gb|BX250554.1|BX250554 BX250554 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP038D10, mRNA sequence
Length = 370
Score = 116 bits (247), Expect(2) = 2e-026
Identities = 41/87 (47%), Positives = 58/87 (66%)
Frame = +1 / +2
Query: 205 NSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKP 384
NS+L LWR GTLP L+ F GL+ P+D WH+LGLGY + ++SAAV+HYNG KP
Sbjct: 47 NSNLRLWRMGTLPPALIAFNGLVHPIDSSWHMLGLGYQPRTNLDSVQSAAVIHYNGRAKP 226
Query: 385 WLKLAIRRYKYIWERYVNISHPYVREC 465
WL +A + +W +YV+ S +++ C
Sbjct: 227 WLDIAFHELRPLWAKYVDFSDEFIKRC 307
Score = 22.1 bits (42), Expect(2) = 2e-026
Identities = 6/13 (46%), Positives = 8/13 (61%)
Frame = +1 / +2
Query: 169 NATSLYHYWQEQN 207
N YHYW ++N
Sbjct: 5 NIKETYHYWLKKN 43
>gb|DR015694.1|DR015694 STRS1_5_C07.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_C07_A034 3', mRNA sequence
Length = 690
Score = 113 bits (242), Expect = 9e-025
Identities = 40/81 (49%), Positives = 56/81 (69%)
Frame = +1 / +1
Query: 223 WRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKPWLKLAI 402
W+ GTLP GL+T+Y +PLD+ WHVLG GY+ I I +AAVVH+NGNMKPWL + +
Sbjct: 1 WKLGTLPPGLITYYKTTKPLDKSWHVLGFGYNPSISMDEIRNAAVVHFNGNMKPWLDIGM 180
Query: 403 RRYKYIWERYVNISHPYVREC 465
+Y+ W +YV+ +V+ C
Sbjct: 181 NQYRDTWTKYVDFDMEFVQMC 243
>gb|DR015777.1|DR015777 STRS1_5_C07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_C07_A034 5', mRNA sequence
Length = 716
Score = 112 bits (239), Expect = 2e-024
Identities = 41/82 (50%), Positives = 56/82 (68%)
Frame = +1 / +1
Query: 220 LWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKPWLKLA 399
LW+ GTLP GL+TFY +PLD+ WHV GLGY+ I I +AAVVH+NG MKPWL +
Sbjct: 7 LWKLGTLPPGLITFYKTTKPLDKSWHVFGLGYNPSISMDEIRNAAVVHFNGFMKPWLDIG 186
Query: 400 IRRYKYIWERYVNISHPYVREC 465
+ +Y+ W +YV+ +V+ C
Sbjct: 187 MNQYRDTWTKYVDYDMEFVQMC 252
>gb|DT633602.1|DT633602 EST1148533 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFW66 3' end, mRNA sequence
Length = 879
Score = 97.3 bits (206), Expect(2) = 3e-021
Identities = 35/53 (66%), Positives = 40/53 (75%)
Frame = +1 / +3
Query: 7 GNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRK 165
G V GAVETC SFHRY KY+NFSHP I ++ +P CGWA+GMN F L AWRK
Sbjct: 669 GKVNGAVETCFGSFHRYDKYMNFSHPLIKARFNPKACGWAYGMNFFHLDAWRK 827
Score = 24.0 bits (46), Expect(2) = 3e-021
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = +1 / +1
Query: 163 KANATSLYHYWQEQNSD 213
+ T YHYWQ N +
Sbjct: 826 REKCTEEYHYWQNLNEN 876
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 367,420,844
Number of Sequences: 355925
Number of extensions: 5565080
Number of successful extensions: 49920
Number of sequences better than 1.0e-020: 30
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 8032488360
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)