TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204680.2.2
(534 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX682419.1|BX682419 BX682419 Pinus pinaster differenciat... 228 2e-059
gb|CF393447.1|CF393447 RTDR3_13_F08.b1_A022 Loblolly pine r... 226 9e-059
gb|CF474032.1|CF474032 RTWW2_18_C08.b1_A021 Well-watered lo... 226 9e-059
gb|CF664508.1|CF664508 RTCNT1_10_F05.b1_A029 Root control P... 226 9e-059
gb|CO159040.1|CO159040 FLD1_11_A05.b1_A029 Root flooded Pin... 226 9e-059
gb|CO159111.1|CO159111 FLD1_11_A05.g1_A029 Root flooded Pin... 226 9e-059
gb|CO159438.1|CO159438 FLD1_13_C12.g1_A029 Root flooded Pin... 226 9e-059
gb|DN450818.1|DN450818 EST946617 Sequencing ESTs from loblo... 226 9e-059
gb|DR013139.1|DR013139 HEAT1_17_F05.b1_A029 Root at 37 C fo... 226 9e-059
gb|DR024062.1|DR024062 STRS1_62_B05.b1_A034 Shoot tip pitch... 226 9e-059
gb|DR055988.1|DR055988 RTCA1_27_G07.b1_A029 Roots minus cal... 226 9e-059
gb|DR117730.1|DR117730 RTMG1_8_G01.g1_A029 Roots minus magn... 226 9e-059
gb|DR178749.1|DR178749 RTMNUT1_13_F03.g1_A029 Roots minus m... 226 9e-059
gb|DR179164.1|DR179164 RTMNUT1_16_H11.b1_A029 Roots minus m... 226 9e-059
gb|DR179243.1|DR179243 RTMNUT1_16_H11.g1_A029 Roots minus m... 226 9e-059
gb|DR181728.1|DR181728 RTMNUT1_40_D09.g2_A029 Roots minus m... 226 9e-059
gb|DR386118.1|DR386118 RTHG1_13_C02.b1_A029 Roots plus adde... 226 9e-059
gb|DR387808.1|DR387808 RTHG1_24_F11.b1_A029 Roots plus adde... 226 9e-059
gb|DT625150.1|DT625150 EST1159425 Sequencing ESTs from lobl... 226 9e-059
gb|CX648261.1|CX648261 COLD1_27_B11.g1_A029 Root cold Pinus... 225 2e-058
gb|DR060018.1|DR060018 RTNIT1_25_E04.b1_A029 Roots minus ni... 224 3e-058
gb|DN628031.1|DN628031 EST978847 Subtracted pine embryo lib... 214 3e-055
gb|DN628852.1|DN628852 EST979668 Subtracted pine embryo lib... 214 3e-055
gb|DN630889.1|DN630889 EST981705 Subtracted pine embryo lib... 214 3e-055
gb|DN632729.1|DN632729 EST983545 Subtracted pine embryo lib... 214 3e-055
gb|DN634085.1|DN634085 EST984901 Subtracted pine embryo lib... 214 3e-055
gb|DN631306.1|DN631306 EST982122 Subtracted pine embryo lib... 212 1e-054
gb|CF393543.1|CF393543 RTDR3_13_F08.g1_A022 Loblolly pine r... 202 2e-051
gb|DR016293.1|DR016293 STRS1_9_F03.b1_A034 Shoot tip pitch ... 200 7e-051
gb|DR010880.1|DR010880 HEAT1_1_H12.g1_A029 Root at 37 C for... 193 8e-049
gb|CF392978.1|CF392978 RTDR3_18_H04.b1_A022 Loblolly pine r... 182 1e-045
gb|DR110796.1|DR110796 RTS1_13_B06.b1_A029 Roots minus sulf... 182 2e-045
gb|DR016380.1|DR016380 STRS1_9_F03.g1_A034 Shoot tip pitch ... 149 3e-040
gb|DN627809.1|DN627809 EST978625 Subtracted pine embryo lib... 159 2e-038
gb|AI919942.1|AI919942 1472 Pine Lambda Zap Xylem library P... 147 7e-035
gb|BX253899.1|BX253899 BX253899 Pinus pinaster differenciat... 144 3e-034
gb|CF392983.1|CF392983 RTDR3_18_E06.b1_A022 Loblolly pine r... 128 2e-029
gb|CO163412.1|CO163412 FLD1_41_B05.g1_A029 Root flooded Pin... 128 2e-029
gb|DR014188.1|DR014188 HEAT1_24_A02.b1_A029 Root at 37 C fo... 128 2e-029
gb|DR014263.1|DR014263 HEAT1_24_A02.g1_A029 Root at 37 C fo... 128 2e-029
gb|CF474820.1|CF474820 RTWW2_8_G11.b1_A021 Well-watered lob... 128 3e-029
gb|CO200378.1|CO200378 GEO2_7_C07.b1_A032 Root gravitropism... 124 5e-028
gb|CF392132.1|CF392132 RTDR3_8_D07.b1_A022 Loblolly pine ro... 123 7e-028
gb|CF472876.1|CF472876 RTDS1_12_H12.b1_A015 Drought-stresse... 123 7e-028
gb|BX251051.1|BX251051 BX251051 Pinus pinaster differenciat... 116 8e-026
gb|DR091587.1|DR091587 RTAL1_22_D06.g1_A029 Roots plus adde... 114 4e-025
gb|DR177385.1|DR177385 RTMNUT1_5_B10.b1_A029 Roots minus mi... 114 4e-025
gb|DR681812.1|DR681812 EST1071887 Normalized pine embryo li... 112 1e-024
gb|AL750794.1|AL750794 AL750794 RN Pinus pinaster cDNA clon... 111 3e-024
gb|CF478586.1|CF478586 RTWW3_16_C08.b1_A022 Well-watered lo... 111 3e-024
gb|CO196946.1|CO196946 GEO1_2_F12.g1_A029 Root gravitropism... 111 3e-024
gb|CX714531.1|CX714531 RTPQ1_23_F07.b1_A032 Roots treated w... 111 3e-024
gb|DR050731.1|DR050731 RTBOR1_25_G12.b1_A029 Roots plus add... 111 3e-024
gb|DR055965.1|DR055965 RTCA1_27_E03.b1_A029 Roots minus cal... 111 3e-024
gb|DR060686.1|DR060686 RTNIT1_29_H06.b1_A029 Roots minus ni... 111 3e-024
gb|DR179598.1|DR179598 RTMNUT1_23_D08.b2_A029 Roots minus m... 111 3e-024
gb|CF673131.1|CF673131 RTCNT1_76_G10.b1_A029 Root control P... 111 4e-024
gb|CV032465.1|CV032465 RTNACL1_8_H04.b1_A029 Roots plus add... 111 4e-024
gb|DR011698.1|DR011698 HEAT1_7_G09.b1_A029 Root at 37 C for... 111 4e-024
gb|DR050418.1|DR050418 RTBOR1_23_H04.b1_A029 Roots plus add... 111 4e-024
gb|DR070348.1|DR070348 RTDK1_12_F05.g1_A029 Roots, dark Pin... 111 4e-024
gb|CF389302.1|CF389302 RTDR2_9_A07.g1_A021 Loblolly pine ro... 111 5e-024
gb|BX254251.1|BX254251 BX254251 Pinus pinaster differenciat... 110 7e-024
gb|DR056886.1|DR056886 RTNIT1_1_E04.b1_A029 Roots minus nit... 110 1e-023
gb|DR059511.1|DR059511 RTNIT1_18_D05.b1_A029 Roots minus ni... 110 1e-023
gb|CO161047.1|CO161047 FLD1_26_G06.b1_A029 Root flooded Pin... 109 1e-023
gb|CO161127.1|CO161127 FLD1_26_G06.g1_A029 Root flooded Pin... 109 1e-023
gb|DR161509.1|DR161509 RTFE1_12_F05.b1_A029 Roots minus iro... 108 3e-023
gb|DR047895.1|DR047895 RTBOR1_5_H04.b2_A029 Roots plus adde... 106 9e-023
gb|DR078006.1|DR078006 RTFEPL1_1_G10.b1_A029 Roots plus add... 105 2e-022
gb|CF479741.1|CF479741 RTWW3_12_B06.b1_A022 Well-watered lo... 105 3e-022
gb|CO367200.1|CO367200 RTK1_32_G05.g1_A029 Roots minus pota... 105 3e-022
gb|DR161595.1|DR161595 RTFE1_12_F05.g1_A029 Roots minus iro... 105 3e-022
gb|CF664050.1|CF664050 RTCNT1_7_A11.b1_A029 Root control Pi... 104 4e-022
gb|DR056369.1|DR056369 RTCA1_29_G06.g1_A029 Roots minus cal... 101 3e-021
gb|DR056832.1|DR056832 RTCA1_32_G06.g1_A029 Roots minus cal... 101 3e-021
gb|DR177769.1|DR177769 RTMNUT1_7_F08.b1_A029 Roots minus mi... 101 3e-021
gb|DR177850.1|DR177850 RTMNUT1_7_F08.g1_A029 Roots minus mi... 101 3e-021
>gb|BX682419.1|BX682419 BX682419 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 116C12 similar to BETAINE-ALDEHYDE
DEHYDROGENASE (EC 1.2.1.8), mRNA sequence
Length = 590
Score = 228 bits (493), Expect = 2e-059
Identities = 88/119 (73%), Positives = 103/119 (86%)
Frame = +2 / +2
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
SM+IWREEVFGPVL V F TE+EAIELAND+QY LAGAV+S + + R+SE + AGI+
Sbjct: 62 SMQIWREEVFGPVLAVMTFKTEEEAIELANDSQYALAGAVLSNNADLRNRVSEHLQAGIV 241
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGWY PSKL*
Sbjct: 242 WVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGWYPQPSKL* 418
>gb|CF393447.1|CF393447 RTDR3_13_F08.b1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_13_F08_A022 3', mRNA
sequence
Length = 664
Score = 226 bits (488), Expect = 9e-059
Identities = 87/119 (73%), Positives = 102/119 (85%)
Frame = +2 / +3
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
SM+IWREEVFGPVL V F TE+EAI LAND+QY LAGAV+S + + R+SE + AGI+
Sbjct: 51 SMQIWREEVFGPVLAVMTFKTEEEAINLANDSQYALAGAVLSNNADLRNRVSENLQAGIV 230
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGWY PSKL*
Sbjct: 231 WVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGWYPQPSKL* 407
>gb|CF474032.1|CF474032 RTWW2_18_C08.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_18_C08_A021 3', mRNA sequence
Length = 637
Score = 226 bits (488), Expect = 9e-059
Identities = 87/119 (73%), Positives = 102/119 (85%)
Frame = +2 / +2
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
SM+IWREEVFGPVL V F TE+EAI LAND+QY LAGAV+S + + R+SE + AGI+
Sbjct: 98 SMQIWREEVFGPVLAVMTFKTEEEAINLANDSQYALAGAVLSNNADLRNRVSENLQAGIV 277
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGWY PSKL*
Sbjct: 278 WVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGWYPQPSKL* 454
>gb|CF664508.1|CF664508 RTCNT1_10_F05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_10_F05_A029 3', mRNA sequence
Length = 649
Score = 226 bits (488), Expect = 9e-059
Identities = 87/119 (73%), Positives = 102/119 (85%)
Frame = +2 / +3
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
SM+IWREEVFGPVL V F TE+EAI LAND+QY LAGAV+S + + R+SE + AGI+
Sbjct: 108 SMQIWREEVFGPVLAVMTFKTEEEAINLANDSQYALAGAVLSNNADLRNRVSENLQAGIV 287
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGWY PSKL*
Sbjct: 288 WVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGWYPQPSKL* 464
>gb|CO159040.1|CO159040 FLD1_11_A05.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_11_A05_A029 3', mRNA sequence
Length = 713
Score = 226 bits (488), Expect = 9e-059
Identities = 87/119 (73%), Positives = 102/119 (85%)
Frame = +2 / +2
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
SM+IWREEVFGPVL V F TE+EAI LAND+QY LAGAV+S + + R+SE + AGI+
Sbjct: 41 SMQIWREEVFGPVLAVMTFKTEEEAINLANDSQYALAGAVLSNNADLRNRVSENLQAGIV 220
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGWY PSKL*
Sbjct: 221 WVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGWYPQPSKL* 397
>gb|CO159111.1|CO159111 FLD1_11_A05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_11_A05_A029 5', mRNA sequence
Length = 796
Score = 226 bits (488), Expect = 9e-059
Identities = 87/119 (73%), Positives = 102/119 (85%)
Frame = +2 / +2
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
SM+IWREEVFGPVL V F TE+EAI LAND+QY LAGAV+S + + R+SE + AGI+
Sbjct: 230 SMQIWREEVFGPVLAVMTFKTEEEAINLANDSQYALAGAVLSNNADLRNRVSENLQAGIV 409
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGWY PSKL*
Sbjct: 410 WVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGWYPQPSKL* 586
>gb|CO159438.1|CO159438 FLD1_13_C12.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_13_C12_A029 5', mRNA sequence
Length = 820
Score = 226 bits (488), Expect = 9e-059
Identities = 87/119 (73%), Positives = 102/119 (85%)
Frame = +2 / -3
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
SM+IWREEVFGPVL V F TE+EAI LAND+QY LAGAV+S + + R+SE + AGI+
Sbjct: 572 SMQIWREEVFGPVLAVMTFKTEEEAINLANDSQYALAGAVLSNNADLRNRVSENLQAGIV 393
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGWY PSKL*
Sbjct: 392 WVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGWYPQPSKL* 216
>gb|DN450818.1|DN450818 EST946617 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIEU63 5' end, mRNA sequence
Length = 586
Score = 226 bits (488), Expect = 9e-059
Identities = 87/119 (73%), Positives = 102/119 (85%)
Frame = +2 / +3
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
SM+IWREEVFGPVL V F TE+EAI LAND+QY LAGAV+S + + R+SE + AGI+
Sbjct: 45 SMQIWREEVFGPVLAVMTFKTEEEAINLANDSQYALAGAVLSNNADLRNRVSENLQAGIV 224
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGWY PSKL*
Sbjct: 225 WVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGWYPQPSKL* 401
>gb|DR013139.1|DR013139 HEAT1_17_F05.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_17_F05_A029 3', mRNA sequence
Length = 847
Score = 226 bits (488), Expect = 9e-059
Identities = 87/119 (73%), Positives = 102/119 (85%)
Frame = +2 / +1
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
SM+IWREEVFGPVL V F TE+EAI LAND+QY LAGAV+S + + R+SE + AGI+
Sbjct: 298 SMQIWREEVFGPVLAVMTFKTEEEAINLANDSQYALAGAVLSNNADLRNRVSENLQAGIV 477
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGWY PSKL*
Sbjct: 478 WVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGWYPQPSKL* 654
>gb|DR024062.1|DR024062 STRS1_62_B05.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_62_B05_A034 3', mRNA sequence
Length = 804
Score = 226 bits (488), Expect = 9e-059
Identities = 87/119 (73%), Positives = 102/119 (85%)
Frame = +2 / +3
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
SM+IWREEVFGPVL V F TE+EAI LAND+QY LAGAV+S + + R+SE + AGI+
Sbjct: 264 SMQIWREEVFGPVLAVMTFKTEEEAINLANDSQYALAGAVLSNNADLRNRVSENLQAGIV 443
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGWY PSKL*
Sbjct: 444 WVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGWYPQPSKL* 620
>gb|DR055988.1|DR055988 RTCA1_27_G07.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_27_G07_A029 3', mRNA sequence
Length = 868
Score = 226 bits (488), Expect = 9e-059
Identities = 87/119 (73%), Positives = 102/119 (85%)
Frame = +2 / +1
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
SM+IWREEVFGPVL V F TE+EAI LAND+QY LAGAV+S + + R+SE + AGI+
Sbjct: 328 SMQIWREEVFGPVLAVMTFKTEEEAINLANDSQYALAGAVLSNNADLRNRVSENLQAGIV 507
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGWY PSKL*
Sbjct: 508 WVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGWYPQPSKL* 684
>gb|DR117730.1|DR117730 RTMG1_8_G01.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_8_G01_A029 5', mRNA sequence
Length = 862
Score = 226 bits (488), Expect = 9e-059
Identities = 87/119 (73%), Positives = 102/119 (85%)
Frame = +2 / +3
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
SM+IWREEVFGPVL V F TE+EAI LAND+QY LAGAV+S + + R+SE + AGI+
Sbjct: 495 SMQIWREEVFGPVLAVMTFKTEEEAINLANDSQYALAGAVLSNNADLRNRVSENLQAGIV 674
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGWY PSKL*
Sbjct: 675 WVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGWYPQPSKL* 851
>gb|DR178749.1|DR178749 RTMNUT1_13_F03.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_13_F03_A029 5', mRNA sequence
Length = 748
Score = 226 bits (488), Expect = 9e-059
Identities = 87/119 (73%), Positives = 102/119 (85%)
Frame = +2 / -3
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
SM+IWREEVFGPVL V F TE+EAI LAND+QY LAGAV+S + + R+SE + AGI+
Sbjct: 635 SMQIWREEVFGPVLAVMTFKTEEEAINLANDSQYALAGAVLSNNADLRNRVSENLQAGIV 456
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGWY PSKL*
Sbjct: 455 WVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGWYPQPSKL* 279
>gb|DR179164.1|DR179164 RTMNUT1_16_H11.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_16_H11_A029 3', mRNA sequence
Length = 817
Score = 226 bits (488), Expect = 9e-059
Identities = 87/119 (73%), Positives = 102/119 (85%)
Frame = +2 / -2
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
SM+IWREEVFGPVL V F TE+EAI LAND+QY LAGAV+S + + R+SE + AGI+
Sbjct: 441 SMQIWREEVFGPVLAVMTFKTEEEAINLANDSQYALAGAVLSNNADLRNRVSENLQAGIV 262
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGWY PSKL*
Sbjct: 261 WVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGWYPQPSKL* 85
>gb|DR179243.1|DR179243 RTMNUT1_16_H11.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_16_H11_A029 5', mRNA sequence
Length = 815
Score = 226 bits (488), Expect = 9e-059
Identities = 87/119 (73%), Positives = 102/119 (85%)
Frame = +2 / -1
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
SM+IWREEVFGPVL V F TE+EAI LAND+QY LAGAV+S + + R+SE + AGI+
Sbjct: 524 SMQIWREEVFGPVLAVMTFKTEEEAINLANDSQYALAGAVLSNNADLRNRVSENLQAGIV 345
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGWY PSKL*
Sbjct: 344 WVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGWYPQPSKL* 168
>gb|DR181728.1|DR181728 RTMNUT1_40_D09.g2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_40_D09_A029 5', mRNA sequence
Length = 700
Score = 226 bits (488), Expect = 9e-059
Identities = 87/119 (73%), Positives = 102/119 (85%)
Frame = +2 / -1
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
SM+IWREEVFGPVL V F TE+EAI LAND+QY LAGAV+S + + R+SE + AGI+
Sbjct: 640 SMQIWREEVFGPVLAVMTFKTEEEAINLANDSQYALAGAVLSNNADLRNRVSENLQAGIV 461
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGWY PSKL*
Sbjct: 460 WVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGWYPQPSKL* 284
>gb|DR386118.1|DR386118 RTHG1_13_C02.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_13_C02_A029 3', mRNA sequence
Length = 832
Score = 226 bits (488), Expect = 9e-059
Identities = 87/119 (73%), Positives = 102/119 (85%)
Frame = +2 / +2
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
SM+IWREEVFGPVL V F TE+EAI LAND+QY LAGAV+S + + R+SE + AGI+
Sbjct: 293 SMQIWREEVFGPVLAVMTFKTEEEAINLANDSQYALAGAVLSNNADLRNRVSENLQAGIV 472
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGWY PSKL*
Sbjct: 473 WVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGWYPQPSKL* 649
>gb|DR387808.1|DR387808 RTHG1_24_F11.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_24_F11_A029 3', mRNA sequence
Length = 789
Score = 226 bits (488), Expect = 9e-059
Identities = 87/119 (73%), Positives = 102/119 (85%)
Frame = +2 / +3
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
SM+IWREEVFGPVL V F TE+EAI LAND+QY LAGAV+S + + R+SE + AGI+
Sbjct: 249 SMQIWREEVFGPVLAVMTFKTEEEAINLANDSQYALAGAVLSNNADLRNRVSENLQAGIV 428
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGWY PSKL*
Sbjct: 429 WVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGWYPQPSKL* 605
>gb|DT625150.1|DT625150 EST1159425 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAM43 5' end, mRNA sequence
Length = 586
Score = 226 bits (488), Expect = 9e-059
Identities = 87/119 (73%), Positives = 102/119 (85%)
Frame = +2 / +3
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
SM+IWREEVFGPVL V F TE+EAI LAND+QY LAGAV+S + + R+SE + AGI+
Sbjct: 45 SMQIWREEVFGPVLAVMTFKTEEEAINLANDSQYALAGAVLSNNADLRNRVSENLQAGIV 224
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGWY PSKL*
Sbjct: 225 WVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGWYPQPSKL* 401
>gb|CX648261.1|CX648261 COLD1_27_B11.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_27_B11_A029 5', mRNA sequence
Length = 827
Score = 225 bits (486), Expect = 2e-058
Identities = 86/118 (72%), Positives = 101/118 (85%)
Frame = +2 / -2
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
SM+IWREEVFGPVL V F TE+EAI LAND+QY LAGAV+S + + R+SE + AGI+
Sbjct: 661 SMQIWREEVFGPVLAVMTFKTEEEAITLANDSQYALAGAVLSNNADLRNRVSENLQAGIV 482
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL 361
WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGWY PSKL
Sbjct: 481 WVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGWYPQPSKL 308
>gb|DR060018.1|DR060018 RTNIT1_25_E04.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_25_E04_A029 3', mRNA sequence
Length = 796
Score = 224 bits (484), Expect = 3e-058
Identities = 86/119 (72%), Positives = 101/119 (84%)
Frame = +2 / +2
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
SM+IWREEVFGPVL V F TE+E I LAND+QY LAGAV+S + + R+SE + AGI+
Sbjct: 44 SMQIWREEVFGPVLAVMTFKTEEEVINLANDSQYALAGAVLSNNADLRNRVSENLQAGIV 223
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGWY PSKL*
Sbjct: 224 WVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGWYPQPSKL* 400
>gb|DN628031.1|DN628031 EST978847 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAAT35, mRNA sequence
Length = 465
Score = 214 bits (462), Expect = 3e-055
Identities = 81/111 (72%), Positives = 96/111 (86%)
Frame = +2 / +3
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
SM+IWREEVFGPVL V F TE+EAI LAND+QY LAGAV+S + + R+SE + AGI+
Sbjct: 132 SMQIWREEVFGPVLAVMTFKTEEEAINLANDSQYALAGAVLSNNADLRNRVSENLQAGIV 311
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGW 340
WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGW
Sbjct: 312 WVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGW 464
>gb|DN628852.1|DN628852 EST979668 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAB565, mRNA sequence
Length = 465
Score = 214 bits (462), Expect = 3e-055
Identities = 81/111 (72%), Positives = 96/111 (86%)
Frame = +2 / -3
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
SM+IWREEVFGPVL V F TE+EAI LAND+QY LAGAV+S + + R+SE + AGI+
Sbjct: 334 SMQIWREEVFGPVLAVMTFKTEEEAINLANDSQYALAGAVLSNNADLRNRVSENLQAGIV 155
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGW 340
WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGW
Sbjct: 154 WVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGW 2
>gb|DN630889.1|DN630889 EST981705 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAC122, mRNA sequence
Length = 463
Score = 214 bits (462), Expect = 3e-055
Identities = 81/111 (72%), Positives = 96/111 (86%)
Frame = +2 / -1
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
SM+IWREEVFGPVL V F TE+EAI LAND+QY LAGAV+S + + R+SE + AGI+
Sbjct: 334 SMQIWREEVFGPVLAVMTFKTEEEAINLANDSQYALAGAVLSNNADLRNRVSENLQAGIV 155
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGW 340
WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGW
Sbjct: 154 WVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGW 2
>gb|DN632729.1|DN632729 EST983545 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTACT89, mRNA sequence
Length = 465
Score = 214 bits (462), Expect = 3e-055
Identities = 81/111 (72%), Positives = 96/111 (86%)
Frame = +2 / +3
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
SM+IWREEVFGPVL V F TE+EAI LAND+QY LAGAV+S + + R+SE + AGI+
Sbjct: 132 SMQIWREEVFGPVLAVMTFKTEEEAINLANDSQYALAGAVLSNNADLRNRVSENLQAGIV 311
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGW 340
WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGW
Sbjct: 312 WVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGW 464
>gb|DN634085.1|DN634085 EST984901 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTADG70, mRNA sequence
Length = 465
Score = 214 bits (462), Expect = 3e-055
Identities = 81/111 (72%), Positives = 96/111 (86%)
Frame = +2 / -3
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
SM+IWREEVFGPVL V F TE+EAI LAND+QY LAGAV+S + + R+SE + AGI+
Sbjct: 334 SMQIWREEVFGPVLAVMTFKTEEEAINLANDSQYALAGAVLSNNADLRNRVSENLQAGIV 155
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGW 340
WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGW
Sbjct: 154 WVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGW 2
>gb|DN631306.1|DN631306 EST982122 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAC763, mRNA sequence
Length = 465
Score = 212 bits (458), Expect = 1e-054
Identities = 80/111 (72%), Positives = 95/111 (85%)
Frame = +2 / +3
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
SM+IWREEVFGPVL F TE+EAI LAND+QY LAGAV+S + + R+SE + AGI+
Sbjct: 132 SMQIWREEVFGPVLAAMTFKTEEEAINLANDSQYALAGAVLSNNADLRNRVSENLQAGIV 311
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGW 340
WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGW
Sbjct: 312 WVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGW 464
>gb|CF393543.1|CF393543 RTDR3_13_F08.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_13_F08_A022 5', mRNA
sequence
Length = 742
Score = 202 bits (435), Expect = 2e-051
Identities = 84/133 (63%), Positives = 101/133 (75%)
Frame = +2 / +3
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
SM+IWREEVFGPVL V F TE+EAI LAND+QY LAGAV+S + + R+SE + AGI+
Sbjct: 321 SMQIWREEVFGPVLAVMTFKTEEEAINLANDSQYALAGAVLSNNADLRNRVSENLQAGIV 500
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL*T 367
WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS+E G + K
Sbjct: 501 WVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNESLGLVPTTFKTIN 680
Query: 368 GMKFCLFH*NKYI 406
+ F L * K +
Sbjct: 681 VLTFKLVP*KKTV 719
>gb|DR016293.1|DR016293 STRS1_9_F03.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_9_F03_A034 3', mRNA sequence
Length = 634
Score = 200 bits (431), Expect = 7e-051
Identities = 77/108 (71%), Positives = 91/108 (84%)
Frame = +2 / +1
Query: 41 PVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGIIWVNCSQPCFCQ 220
PVL V F TE+EAI LAND+QY LAGAV+S + + R+SE + AGI+WVNC+QP FCQ
Sbjct: 1 PVLAVMTFKTEEEAINLANDSQYALAGAVLSNNADLRNRVSENLQAGIVWVNCAQPTFCQ 180
Query: 221 APWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
APWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGWY PSKL*
Sbjct: 181 APWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGWYPQPSKL* 324
>gb|DR010880.1|DR010880 HEAT1_1_H12.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_1_H12_A029 5', mRNA sequence
Length = 571
Score = 193 bits (416), Expect = 8e-049
Identities = 74/104 (71%), Positives = 88/104 (84%)
Frame = +2 / +1
Query: 53 VKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGIIWVNCSQPCFCQAPWG 232
V F TE+EAI LAND+QY LAGAV+S + + R+SE + AGI+WVNC+QP FCQAPWG
Sbjct: 4 VMTFKTEEEAINLANDSQYALAGAVLSNNADLRNRVSENLQAGIVWVNCAQPTFCQAPWG 183
Query: 233 GNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
GNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGWY PSKL*
Sbjct: 184 GNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGWYPQPSKL* 315
>gb|CF392978.1|CF392978 RTDR3_18_H04.b1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_18_H04_A022 3', mRNA
sequence
Length = 479
Score = 182 bits (393), Expect = 1e-045
Identities = 69/98 (70%), Positives = 83/98 (84%)
Frame = +2 / +1
Query: 71 EDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGIIWVNCSQPCFCQAPWGGNKRSG 250
E+EAI AND+QY LAGAV+S + + R+ E + AGI+WVNC+QP FCQAPWGGNKRSG
Sbjct: 1 EEEAINFANDSQYALAGAVLSNNADLRNRVFENLQAGIVWVNCAQPTFCQAPWGGNKRSG 180
Query: 251 FGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
FGRELG+ G++NYLSVKQVTEYIS++PWGWY PSKL*
Sbjct: 181 FGRELGKWGLENYLSVKQVTEYISNDPWGWYPQPSKL* 294
>gb|DR110796.1|DR110796 RTS1_13_B06.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_13_B06_A029 3', mRNA sequence
Length = 468
Score = 182 bits (391), Expect = 2e-045
Identities = 69/95 (72%), Positives = 82/95 (86%)
Frame = +2 / +1
Query: 80 AIELANDTQYGLAGAVISGDRERCQRLSEEIDAGIIWVNCSQPCFCQAPWGGNKRSGFGR 259
AI LAND+QY LAGAV+S + + R+SE + AGI+WVNC+QP FCQAPWGGNKRSGFGR
Sbjct: 1 AINLANDSQYALAGAVLSNNADLRNRVSENLQAGIVWVNCAQPTFCQAPWGGNKRSGFGR 180
Query: 260 ELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
ELG+ G++NYLSVKQVTEYIS++PWGWY PSKL*
Sbjct: 181 ELGKWGLENYLSVKQVTEYISNDPWGWYPQPSKL* 285
>gb|DR016380.1|DR016380 STRS1_9_F03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_9_F03_A034 5', mRNA sequence
Length = 623
Score = 149 bits (320), Expect(2) = 3e-040
Identities = 54/69 (78%), Positives = 63/69 (91%)
Frame = +2 / +2
Query: 158 LSEEIDAGIIWVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWG 337
+SE + AGI+WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWG
Sbjct: 101 VSENLQAGIVWVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWG 280
Query: 338 WYRSPSKL* 364
WY PSKL*
Sbjct: 281 WYPQPSKL* 307
Score = 35.4 bits (71), Expect(2) = 3e-040
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +2 / +1
Query: 80 AIELANDTQYGLAGAVISGDRE 145
AI LAND+QY LAGAV+S + +
Sbjct: 22 AINLANDSQYALAGAVLSNNAD 87
>gb|DN627809.1|DN627809 EST978625 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAAP92, mRNA sequence
Length = 375
Score = 159 bits (341), Expect = 2e-038
Identities = 61/85 (71%), Positives = 71/85 (83%)
Frame = +2 / -3
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
SM+IWREEVFGPVL V F TE+EAI LAND+QY LAGAV+S + + R+SE + AGI+
Sbjct: 256 SMQIWREEVFGPVLAVMTFKTEEEAINLANDSQYALAGAVLSNNADLRNRVSENLQAGIV 77
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRE 262
WVNC+QP FCQAPWGGNKRSGFGRE
Sbjct: 76 WVNCAQPTFCQAPWGGNKRSGFGRE 2
>gb|AI919942.1|AI919942 1472 Pine Lambda Zap Xylem library Pinus taeda cDNA clone
G11_PL10CSUH, mRNA sequence
Length = 644
Score = 147 bits (315), Expect = 7e-035
Identities = 53/67 (79%), Positives = 61/67 (91%)
Frame = +2 / +3
Query: 164 EEIDAGIIWVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWY 343
E + AGI+WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGWY
Sbjct: 246 ENLQAGIVWVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGWY 425
Query: 344 RSPSKL* 364
PSKL*
Sbjct: 426 PQPSKL* 446
>gb|BX253899.1|BX253899 BX253899 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP090C09 similar to BETAINE ALDEHYDE
DEHYDROGENASE, mRNA sequence
Length = 399
Score = 144 bits (310), Expect = 3e-034
Identities = 52/65 (80%), Positives = 60/65 (92%)
Frame = +2 / +2
Query: 170 IDAGIIWVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRS 349
+ AGI+WVNC+QP FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGWY
Sbjct: 2 LQAGIVWVNCAQPTFCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGWYPQ 181
Query: 350 PSKL* 364
PSKL*
Sbjct: 182 PSKL* 196
>gb|CF392983.1|CF392983 RTDR3_18_E06.b1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_18_E06_A022 3', mRNA
sequence
Length = 607
Score = 128 bits (275), Expect = 2e-029
Identities = 55/108 (50%), Positives = 70/108 (64%)
Frame = +2 / +2
Query: 11 MEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGIIW 190
M+I +EE+FGPV+ + +F T +EAIEL N T YGLA ++S D + RLS I AG+IW
Sbjct: 203 MKIGKEEIFGPVMSIFKFRTIEEAIELGNKTIYGLAAGIVSKDIDTVNRLSRSIRAGVIW 382
Query: 191 VNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPW 334
VNC F AP+GG K SG GRE G + NYL+VK V + D PW
Sbjct: 383 VNCYYAFFPDAPFGGYKMSGIGREQGLDVLKNYLAVKCVITPLHDSPW 526
>gb|CO163412.1|CO163412 FLD1_41_B05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_41_B05_A029 5', mRNA sequence
Length = 794
Score = 128 bits (275), Expect = 2e-029
Identities = 55/108 (50%), Positives = 70/108 (64%)
Frame = +2 / -2
Query: 11 MEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGIIW 190
M+I +EE+FGPV+ + +F T +EAIEL N T YGLA ++S D + RLS I AG+IW
Sbjct: 436 MKIGKEEIFGPVMSIFKFRTIEEAIELGNKTIYGLAAGIVSKDIDTVNRLSRSIRAGVIW 257
Query: 191 VNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPW 334
VNC F AP+GG K SG GRE G + NYL+VK V + D PW
Sbjct: 256 VNCYYAFFPDAPFGGYKMSGIGREQGLDVLKNYLAVKCVITPLHDSPW 113
>gb|DR014188.1|DR014188 HEAT1_24_A02.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_24_A02_A029 3', mRNA sequence
Length = 753
Score = 128 bits (275), Expect = 2e-029
Identities = 55/108 (50%), Positives = 70/108 (64%)
Frame = +2 / +1
Query: 11 MEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGIIW 190
M+I +EE+FGPV+ + +F T +EAIEL N T YGLA ++S D + RLS I AG+IW
Sbjct: 304 MKIGKEEIFGPVMSIFKFRTIEEAIELGNKTIYGLAAGIVSKDIDTVNRLSRSIRAGVIW 483
Query: 191 VNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPW 334
VNC F AP+GG K SG GRE G + NYL+VK V + D PW
Sbjct: 484 VNCYYAFFPDAPFGGYKMSGIGREQGLDVLKNYLAVKCVITPLHDSPW 627
>gb|DR014263.1|DR014263 HEAT1_24_A02.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_24_A02_A029 5', mRNA sequence
Length = 925
Score = 128 bits (275), Expect = 2e-029
Identities = 55/108 (50%), Positives = 70/108 (64%)
Frame = +2 / +2
Query: 11 MEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGIIW 190
M+I +EE+FGPV+ + +F T +EAIEL N T YGLA ++S D + RLS I AG+IW
Sbjct: 485 MKIGKEEIFGPVMSIFKFRTIEEAIELGNKTIYGLAAGIVSKDIDTVNRLSRSIRAGVIW 664
Query: 191 VNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPW 334
VNC F AP+GG K SG GRE G + NYL+VK V + D PW
Sbjct: 665 VNCYYAFFPDAPFGGYKMSGIGREQGLDVLKNYLAVKCVITPLHDSPW 808
>gb|CF474820.1|CF474820 RTWW2_8_G11.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_8_G11_A021 3', mRNA sequence
Length = 564
Score = 128 bits (274), Expect = 3e-029
Identities = 55/108 (50%), Positives = 70/108 (64%)
Frame = +2 / +1
Query: 11 MEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGIIW 190
M+I +EE+FGPV+ + +F T +EAIEL N T YGLA ++S D + RLS I AG+IW
Sbjct: 160 MKIGKEEIFGPVMSIFKFRTIEEAIELGNKTIYGLAAGIVSKDIDTVNRLSRSIRAGVIW 339
Query: 191 VNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPW 334
VNC F AP+GG K SG GRE G + NYL+VK V + D PW
Sbjct: 340 VNCYYAFFPDAPFGGYKMSGIGREHGLDVLKNYLAVKCVITPLHDSPW 483
>gb|CO200378.1|CO200378 GEO2_7_C07.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_7_C07_A032 3', mRNA sequence
Length = 767
Score = 124 bits (265), Expect = 5e-028
Identities = 53/108 (49%), Positives = 69/108 (63%)
Frame = +2 / +3
Query: 11 MEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGIIW 190
M+I +EE+FGPV+ + +F T +EAIEL N T YGLA + S + + R+S I AG+IW
Sbjct: 369 MKIGKEEIFGPVMSIFKFRTIEEAIELGNKTIYGLAAGIASKNIDTVNRISRSIRAGVIW 548
Query: 191 VNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPW 334
VNC F AP+GG K SG GRE G + NYL+VK V + D PW
Sbjct: 549 VNCYHVVFPDAPFGGYKMSGIGREQGLDVLKNYLAVKCVITPLHDSPW 692
>gb|CF392132.1|CF392132 RTDR3_8_D07.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_8_D07_A022 3', mRNA
sequence
Length = 697
Score = 123 bits (264), Expect = 7e-028
Identities = 52/108 (48%), Positives = 70/108 (64%)
Frame = +2 / +1
Query: 11 MEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGIIW 190
M+I +EE+FGPV+ + +F T +EAIEL N T YGLA ++S + + RLS I AG+IW
Sbjct: 16 MKIGKEEIFGPVMSIFKFRTIEEAIELGNKTIYGLAAGIVSKNIDTVNRLSRSIRAGMIW 195
Query: 191 VNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPW 334
VNC + AP+GG K SG GRE G + NYL+VK V + + PW
Sbjct: 196 VNCYYAFYPDAPFGGYKMSGIGREQGLDVLKNYLAVKSVITPLHESPW 339
>gb|CF472876.1|CF472876 RTDS1_12_H12.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_12_H12_A015 3', mRNA sequence
Length = 550
Score = 123 bits (264), Expect = 7e-028
Identities = 53/108 (49%), Positives = 69/108 (63%)
Frame = +2 / +3
Query: 11 MEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGIIW 190
M+I +EE+FGPV+ + +F + +EAIEL N T YGLA ++S + + RLS I AG+IW
Sbjct: 18 MKIGKEEIFGPVMSIFKFRSIEEAIELGNKTIYGLAAGIVSKNIDTVNRLSRSIRAGVIW 197
Query: 191 VNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPW 334
VNC F AP+GG K SG GRE G + NYL VK V + D PW
Sbjct: 198 VNCYHVVFPDAPFGGYKMSGIGREQGLDVLKNYLVVKCVITPLHDSPW 341
>gb|BX251051.1|BX251051 BX251051 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP044F06 similar to BETAINE ALDEHYDE
DEHYDROGENASE, mRNA sequence
Length = 360
Score = 116 bits (249), Expect = 8e-026
Identities = 43/51 (84%), Positives = 48/51 (94%)
Frame = +2 / +3
Query: 212 FCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
FCQAPWGGNKRSGFGRELG+ G++NYLSVKQVTEYIS++PWGWY PSKL*
Sbjct: 3 FCQAPWGGNKRSGFGRELGKWGLENYLSVKQVTEYISNDPWGWYPQPSKL* 155
>gb|DR091587.1|DR091587 RTAL1_22_D06.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_22_D06_A029 5', mRNA sequence
Length = 725
Score = 114 bits (244), Expect = 4e-025
Identities = 51/108 (47%), Positives = 67/108 (62%)
Frame = +2 / -3
Query: 11 MEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGIIW 190
M+I +EE+FGPV+ V +F + +EAIEL N T YGLA +++ + + RLS I AG+IW
Sbjct: 501 MKIGKEEIFGPVMSVFKFRSIEEAIELGNKTIYGLAAGIMTKNIDIVNRLSRSIRAGVIW 322
Query: 191 VNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPW 334
VNC P GG K SG GRE G + NYL+VK V + D PW
Sbjct: 321 VNCYAALDPDTPIGGYKMSGIGREQGLDVLKNYLAVKCVITPLHDSPW 178
>gb|DR177385.1|DR177385 RTMNUT1_5_B10.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_5_B10_A029 3', mRNA sequence
Length = 646
Score = 114 bits (244), Expect = 4e-025
Identities = 51/108 (47%), Positives = 67/108 (62%)
Frame = +2 / +2
Query: 11 MEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGIIW 190
M+I +EE+FGPV+ V +F + +EAIEL N T YGLA +++ + + RLS I AG+IW
Sbjct: 230 MKIGKEEIFGPVMSVFKFRSIEEAIELGNKTIYGLAAGIMTKNIDIVNRLSRSIRAGVIW 409
Query: 191 VNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPW 334
VNC P GG K SG GRE G + NYL+VK V + D PW
Sbjct: 410 VNCYAALDPDTPIGGYKMSGIGREQGLDVLKNYLAVKCVITPLHDSPW 553
>gb|DR681812.1|DR681812 EST1071887 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA204, mRNA sequence
Length = 575
Score = 112 bits (240), Expect = 1e-024
Identities = 44/108 (40%), Positives = 65/108 (60%)
Frame = +2 / -2
Query: 11 MEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGIIW 190
M+I ++E+FGPV+ + +F T DEAIE N T YGL +++ + + R + + AG++W
Sbjct: 463 MKIAQDEIFGPVMSILKFKTIDEAIERGNKTIYGLGAGIVTKNIDVANRFARSLCAGMVW 284
Query: 191 VNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPW 334
+NC P GG K SG GRE G G++NYL VK V + + PW
Sbjct: 283 INCYLVGSPDCPMGGYKMSGIGREYGSTGLENYLQVKSVITPLQESPW 140
>gb|AL750794.1|AL750794 AL750794 RN Pinus pinaster cDNA clone RN07D07 similar to ALDEHYDE
DEHYDROGENASE, mRNA sequence
Length = 489
Score = 111 bits (238), Expect = 3e-024
Identities = 47/99 (47%), Positives = 61/99 (61%)
Frame = +2 / +3
Query: 11 MEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGIIW 190
M+I +EE+FGPV + +F E E I+LA+DT YGLA AV + + R+S + AG +W
Sbjct: 36 MKIMQEEIFGPVCAISKFKDEKEVIDLAHDTAYGLAAAVHTKNLNTALRVSNALKAGTVW 215
Query: 191 VNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQV 307
VNC Q P+GG K SG GRELGE + NY K V
Sbjct: 216 VNCYNMLHHQLPFGGYKESGIGRELGEAALANYTQNKSV 332
>gb|CF478586.1|CF478586 RTWW3_16_C08.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_16_C08_A022 3', mRNA sequence
Length = 643
Score = 111 bits (238), Expect = 3e-024
Identities = 47/108 (43%), Positives = 62/108 (57%)
Frame = +2 / +2
Query: 11 MEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGIIW 190
M+I +EE+FGPV+ + +F T +E IE N T YGL +I+ D RLS + AG +W
Sbjct: 251 MQIAKEEIFGPVMSILKFKTIEEVIERGNKTIYGLGAGIITKDINIANRLSRSLRAGTVW 430
Query: 191 VNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPW 334
+N P GG K SG GRE G G++NYL VK V + D PW
Sbjct: 431 INSYLAVGPDVPLGGYKMSGIGREYGSYGLENYLQVKCVITPLQDSPW 574
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 286,823,702
Number of Sequences: 355925
Number of extensions: 3882263
Number of successful extensions: 47051
Number of sequences better than 1.0e-020: 82
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 6838469820
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)