TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204486.2.1
(607 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO363793.1|CO363793 RTK1_11_G09.g1_A029 Roots minus pota... 154 7e-037
gb|DR013367.1|DR013367 HEAT1_18_H09.g1_A029 Root at 37 C fo... 154 7e-037
gb|DR742500.1|DR742500 RTCU1_4_A06.g1_A029 Roots plus added... 154 7e-037
gb|BG318003.1|BG318003 NXPV_008_D06_F NXPV (Nsf Xylem Plani... 148 4e-035
gb|CO363274.1|CO363274 RTK1_8_E09.g1_A029 Roots minus potas... 145 3e-034
gb|BG318895.1|BG318895 NXPV_021_B01_F NXPV (Nsf Xylem Plani... 138 3e-032
gb|DR688621.1|DR688621 EST1078706 Normalized pine embryo li... 100 8e-032
gb|AI812586.1|AI812586 13F10 Pine Lambda Zap Xylem library ... 135 2e-031
gb|DR060568.1|DR060568 RTNIT1_28_D08.g1_A029 Roots minus ni... 130 1e-029
gb|DN609073.1|DN609073 EST962123 Subtracted pine embryo lib... 127 7e-029
gb|DT627635.1|DT627635 EST1156384 Subtracted pine embryo li... 125 2e-028
gb|DR015799.1|DR015799 STRS1_5_E08.g1_A034 Shoot tip pitch ... 121 6e-027
gb|CR392439.1|CR392439 CR392439 RN Pinus pinaster cDNA clon... 117 5e-026
gb|CO366146.1|CO366146 RTK1_26_D08.b1_A029 Roots minus pota... 107 6e-023
gb|CO366230.1|CO366230 RTK1_26_D08.g1_A029 Roots minus pota... 107 6e-023
gb|DR015011.1|DR015011 STRS1_1_A09.b1_A034 Shoot tip pitch ... 107 6e-023
gb|DR015090.1|DR015090 STRS1_1_A09.g1_A034 Shoot tip pitch ... 107 6e-023
gb|DR015715.1|DR015715 STRS1_5_E06.b1_A034 Shoot tip pitch ... 107 6e-023
gb|DR015797.1|DR015797 STRS1_5_E06.g1_A034 Shoot tip pitch ... 107 6e-023
gb|CF471128.1|CF471128 RTDS1_16_B03.g1_A015 Drought-stresse... 107 8e-023
gb|DR020503.1|DR020503 STRS1_37_A06.g1_A034 Shoot tip pitch... 107 8e-023
gb|CF475656.1|CF475656 RTWW2_11_G01.g1_A021 Well-watered lo... 105 2e-022
gb|DR089020.1|DR089020 RTAL1_6_C10.b1_A029 Roots plus added... 105 2e-022
gb|DR089108.1|DR089108 RTAL1_6_C10.g1_A029 Roots plus added... 105 2e-022
gb|CO164464.1|CO164464 FLD1_48_E04.b1_A029 Root flooded Pin... 105 3e-022
gb|CO164538.1|CO164538 FLD1_48_E04.g1_A029 Root flooded Pin... 105 3e-022
gb|CF385877.1|CF385877 RTDR1_6_B08.g1_A015 Loblolly pine ro... 105 4e-022
gb|CF396615.1|CF396615 RTDS2_23_D12.b1_A021 Drought-stresse... 105 4e-022
gb|CO163019.1|CO163019 FLD1_39_A05.b1_A029 Root flooded Pin... 105 4e-022
gb|DR010883.1|DR010883 HEAT1_2_A03.b1_A029 Root at 37 C for... 105 4e-022
gb|DR023078.1|DR023078 STRS1_55_H02.b1_A034 Shoot tip pitch... 105 4e-022
gb|DR096311.1|DR096311 STRR1_27_E04.b1_A033 Stem Response R... 105 4e-022
gb|DR096391.1|DR096391 STRR1_27_E04.g1_A033 Stem Response R... 105 4e-022
gb|DR025340.1|DR025340 STRS1_71_C02.b1_A034 Shoot tip pitch... 103 1e-021
gb|DR010959.1|DR010959 HEAT1_2_A03.g1_A029 Root at 37 C for... 100 7e-021
>gb|CO363793.1|CO363793 RTK1_11_G09.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_11_G09_A029 5', mRNA sequence
Length = 710
Score = 154 bits (330), Expect = 7e-037
Identities = 59/94 (62%), Positives = 71/94 (75%)
Frame = +3 / -1
Query: 24 LYGEDDIVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALG 203
++ E +P+SI WQIPQYF++G +EVFTFVGQLEFFYDQ+PDAMRS+CSALSL T ALG
Sbjct: 587 VHDEGTPIPMSIFWQIPQYFLVGASEVFTFVGQLEFFYDQSPDAMRSLCSALSLLTTALG 408
Query: 204 NYLSXXXXXXXXXXXXRHGRIGWIPENLNRGHLD 305
NYLS + G +GWIP+NLN GHLD
Sbjct: 407 NYLSSLIVTVVMFATTKGGNVGWIPDNLNEGHLD 306
Score = 76.7 bits (161), Expect(2) = 1e-024
Identities = 36/66 (54%), Positives = 43/66 (65%)
Frame = -1 / +1
Query: 202 PSATVVSDSAEHMLLMASGAWS*KNSSCPTKVNTSAHPMMKYCGICQQMEMGTMSSSPYR 23
P+A V +SA H L +ASG WS*KNSSCPTKV TS P KY GICQ+M +G S +
Sbjct: 409 PNAVVRRESALHKLRIASGDWS*KNSSCPTKVKTSDAPTKKYWGICQKMLIGIGVPSSWT 588
Query: 22 PCRAMA 5
A+A
Sbjct: 589 KS*ALA 606
Score = 56.1 bits (116), Expect(2) = 1e-024
Identities = 24/44 (54%), Positives = 29/44 (65%)
Frame = -1 / +1
Query: 388 FLYLYQLAMTR*ARKLRRLSTASSQKK*SRWPRLRFSGIHPMRP 257
FLYLY+ A K +RLS A++QK *SRWP + SGIHP P
Sbjct: 223 FLYLYRWAQETYTSKFKRLSEANTQK**SRWPSFKLSGIHPTFP 354
>gb|DR013367.1|DR013367 HEAT1_18_H09.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_18_H09_A029 5', mRNA sequence
Length = 700
Score = 154 bits (330), Expect = 7e-037
Identities = 59/94 (62%), Positives = 71/94 (75%)
Frame = +3 / +3
Query: 24 LYGEDDIVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALG 203
++ E +P+SI WQIPQYF++G +EVFTFVGQLEFFYDQ+PDAMRS+CSALSL T ALG
Sbjct: 141 VHDEGTPIPMSIFWQIPQYFLVGASEVFTFVGQLEFFYDQSPDAMRSLCSALSLLTTALG 320
Query: 204 NYLSXXXXXXXXXXXXRHGRIGWIPENLNRGHLD 305
NYLS + G +GWIP+NLN GHLD
Sbjct: 321 NYLSSLIVTVVMFATTKGGNVGWIPDNLNEGHLD 422
Score = 76.7 bits (161), Expect(2) = 1e-024
Identities = 36/66 (54%), Positives = 43/66 (65%)
Frame = -1 / -1
Query: 202 PSATVVSDSAEHMLLMASGAWS*KNSSCPTKVNTSAHPMMKYCGICQQMEMGTMSSSPYR 23
P+A V +SA H L +ASG WS*KNSSCPTKV TS P KY GICQ+M +G S +
Sbjct: 319 PNAVVRRESALHKLRIASGDWS*KNSSCPTKVKTSDAPTKKYWGICQKMLIGIGVPSSWT 140
Query: 22 PCRAMA 5
A+A
Sbjct: 139 KS*ALA 122
Score = 56.1 bits (116), Expect(2) = 1e-024
Identities = 24/44 (54%), Positives = 29/44 (65%)
Frame = -1 / -1
Query: 388 FLYLYQLAMTR*ARKLRRLSTASSQKK*SRWPRLRFSGIHPMRP 257
FLYLY+ A K +RLS A++QK *SRWP + SGIHP P
Sbjct: 505 FLYLYRWAQETYTSKFKRLSEANTQK**SRWPSFKLSGIHPTFP 374
>gb|DR742500.1|DR742500 RTCU1_4_A06.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_4_A06_A029 5', mRNA sequence
Length = 814
Score = 154 bits (330), Expect = 7e-037
Identities = 59/94 (62%), Positives = 71/94 (75%)
Frame = +3 / -1
Query: 24 LYGEDDIVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALG 203
++ E +P+SI WQIPQYF++G +EVFTFVGQLEFFYDQ+PDAMRS+CSALSL T ALG
Sbjct: 607 VHDEGTPIPMSIFWQIPQYFLVGASEVFTFVGQLEFFYDQSPDAMRSLCSALSLLTTALG 428
Query: 204 NYLSXXXXXXXXXXXXRHGRIGWIPENLNRGHLD 305
NYLS + G +GWIP+NLN GHLD
Sbjct: 427 NYLSSLIVTVVMFATTKGGNVGWIPDNLNEGHLD 326
Score = 76.7 bits (161), Expect(2) = 1e-024
Identities = 36/66 (54%), Positives = 43/66 (65%)
Frame = -1 / +3
Query: 202 PSATVVSDSAEHMLLMASGAWS*KNSSCPTKVNTSAHPMMKYCGICQQMEMGTMSSSPYR 23
P+A V +SA H L +ASG WS*KNSSCPTKV TS P KY GICQ+M +G S +
Sbjct: 429 PNAVVRRESALHKLRIASGDWS*KNSSCPTKVKTSDAPTKKYWGICQKMLIGIGVPSSWT 608
Query: 22 PCRAMA 5
A+A
Sbjct: 609 KS*ALA 626
Score = 56.1 bits (116), Expect(2) = 1e-024
Identities = 24/44 (54%), Positives = 29/44 (65%)
Frame = -1 / +3
Query: 388 FLYLYQLAMTR*ARKLRRLSTASSQKK*SRWPRLRFSGIHPMRP 257
FLYLY+ A K +RLS A++QK *SRWP + SGIHP P
Sbjct: 243 FLYLYRWAQETYTSKFKRLSEANTQK**SRWPSFKLSGIHPTFP 374
>gb|BG318003.1|BG318003 NXPV_008_D06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_008_D06 5' similar to Arabidopsis
thaliana sequence At5g01180 oligopeptide transporter -
like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 581
Score = 148 bits (317), Expect = 4e-035
Identities = 56/87 (64%), Positives = 68/87 (78%)
Frame = +3 / +3
Query: 45 VPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXXX 224
+P+SI WQ+PQYF+IG +E+FTF+GQLEFFYDQAPDAMRS+ SA+SLTTVALGNYLS
Sbjct: 222 IPMSIFWQVPQYFLIGASEIFTFIGQLEFFYDQAPDAMRSLMSAVSLTTVALGNYLSTLL 401
Query: 225 XXXXXXXXXRHGRIGWIPENLNRGHLD 305
RHG+ GW +NLN GH+D
Sbjct: 402 VTIVTDITTRHGKKGWXXDNLNYGHID 482
>gb|CO363274.1|CO363274 RTK1_8_E09.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_8_E09_A029 5', mRNA sequence
Length = 703
Score = 145 bits (311), Expect = 3e-034
Identities = 57/87 (65%), Positives = 65/87 (74%)
Frame = +3 / -3
Query: 45 VPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXXX 224
VP+SI WQIPQYF+IG AE+FTF+G LEFFYDQ+PDAMRS+CSAL+L T A GNYLS
Sbjct: 560 VPLSIFWQIPQYFLIGLAEIFTFIGALEFFYDQSPDAMRSLCSALNLLTTAGGNYLSTFI 381
Query: 225 XXXXXXXXXRHGRIGWIPENLNRGHLD 305
R G GWIP+NLN GHLD
Sbjct: 380 LTMVAYFTTRGGNPGWIPDNLNEGHLD 300
>gb|BG318895.1|BG318895 NXPV_021_B01_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_021_B01 5' similar to Arabidopsis
thaliana sequence At5g01180 oligopeptide transporter -
like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 479
Score = 138 bits (296), Expect = 3e-032
Identities = 55/86 (63%), Positives = 66/86 (76%)
Frame = +3 / +3
Query: 45 VPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXXX 224
+P+SI WQ+PQYF+IG +E+FTF+GQLEFFYDQAPDAMRS+ SA+SLTTVAL NYLS
Sbjct: 222 IPMSIFWQVPQYFLIGASEIFTFIGQLEFFYDQAPDAMRSLMSAVSLTTVALCNYLSTLL 401
Query: 225 XXXXXXXXXRHGRIGWIPENLNRGHL 302
HG WIP+N N GH+
Sbjct: 402 VXXVTDITTXHGXXXWIPDNXNYGHI 479
>gb|DR688621.1|DR688621 EST1078706 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC846 3' end, mRNA sequence
Length = 524
Score = 99.6 bits (211), Expect(2) = 8e-032
Identities = 37/52 (71%), Positives = 46/52 (88%)
Frame = +3 / +2
Query: 24 LYGEDDIVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSAL 179
++ E +P+SI WQIPQYF++G +EVFTFVGQLEFFYDQ+PDAMRS+CSAL
Sbjct: 164 VHDEGTPIPMSIFWQIPQYFLVGASEVFTFVGQLEFFYDQSPDAMRSLCSAL 319
Score = 70.3 bits (147), Expect(2) = 2e-021
Identities = 33/58 (56%), Positives = 38/58 (65%)
Frame = -1 / -3
Query: 178 SAEHMLLMASGAWS*KNSSCPTKVNTSAHPMMKYCGICQQMEMGTMSSSPYRPCRAMA 5
SA H L +ASG WS*KNSSCPTKV TS P KY GICQ+M +G S + A+A
Sbjct: 318 SALHKLRIASGDWS*KNSSCPTKVKTSDAPTKKYWGICQKMLIGIGVPSSWTKS*ALA 145
Score = 57.4 bits (119), Expect(2) = 8e-032
Identities = 22/42 (52%), Positives = 25/42 (59%)
Frame = +3 / +3
Query: 180 SLTTVALGNYLSXXXXXXXXXXXXRHGRIGWIPENLNRGHLD 305
SL T ALGNYLS + G +GWIP+NLN GHLD
Sbjct: 321 SLLTTALGNYLSSLIVTVVMFATTKGGNVGWIPDNLNEGHLD 446
Score = 51.5 bits (106), Expect(2) = 2e-021
Identities = 22/42 (52%), Positives = 27/42 (64%)
Frame = -1 / -2
Query: 382 YLYQLAMTR*ARKLRRLSTASSQKK*SRWPRLRFSGIHPMRP 257
YLY+ A K +RLS A++QK *SRWP + SGIHP P
Sbjct: 523 YLYRWAQETYTSKFKRLSEANTQK**SRWPSFKLSGIHPTFP 398
>gb|AI812586.1|AI812586 13F10 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 634
Score = 135 bits (290), Expect = 2e-031
Identities = 53/94 (56%), Positives = 67/94 (71%)
Frame = +3 / +3
Query: 24 LYGEDDIVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALG 203
++ E + +SI +IPQYF++G +EVFTFVGQLEF YDQ+PDAMRS+CSAL + T ALG
Sbjct: 18 VHDEGTPIAMSIFPEIPQYFLVGASEVFTFVGQLEFLYDQSPDAMRSLCSALYILTTALG 197
Query: 204 NYLSXXXXXXXXXXXXRHGRIGWIPENLNRGHLD 305
NYLS + G +GWIP+NLN GHLD
Sbjct: 198 NYLSSLIVTVVMFATTKGGNVGWIPDNLNEGHLD 299
>gb|DR060568.1|DR060568 RTNIT1_28_D08.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_28_D08_A029 5', mRNA sequence
Length = 781
Score = 130 bits (278), Expect = 1e-029
Identities = 50/87 (57%), Positives = 59/87 (67%)
Frame = +3 / -2
Query: 45 VPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXXX 224
VP+SI WQIPQY ++G AE F GQLEFFY++APDAMR++CSALS + A GNY S
Sbjct: 498 VPLSILWQIPQYVLLGVAETFVLAGQLEFFYEEAPDAMRTLCSALSHLSTAFGNYFSSVL 319
Query: 225 XXXXXXXXXRHGRIGWIPENLNRGHLD 305
R G +GWIP NLN GHLD
Sbjct: 318 VIVVMLITTRGGSVGWIPSNLNEGHLD 238
>gb|DN609073.1|DN609073 EST962123 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PSAA819, mRNA sequence
Length = 373
Score = 127 bits (272), Expect = 7e-029
Identities = 49/75 (65%), Positives = 57/75 (76%)
Frame = +3 / +3
Query: 81 FIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXXXXXXXXXXXXRHG 260
F++G +EVFTFVGQLEFFYDQ+PDAMRS+CSALSL T ALGNYLS + G
Sbjct: 3 FLVGASEVFTFVGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSLIVTVVMFATTKGG 182
Query: 261 RIGWIPENLNRGHLD 305
+GWIP+NLN GHLD
Sbjct: 183 NVGWIPDNLNEGHLD 227
>gb|DT627635.1|DT627635 EST1156384 Subtracted pine embryo library, Lib_B Pinus taeda cDNA
clone PIMCO85 5' end, mRNA sequence
Length = 373
Score = 125 bits (268), Expect = 2e-028
Identities = 48/75 (64%), Positives = 56/75 (74%)
Frame = +3 / -3
Query: 81 FIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXXXXXXXXXXXXRHG 260
F++G +EVFTFVGQLEFFYDQ+PDAMRS+CSALS T ALGNYLS + G
Sbjct: 371 FLVGASEVFTFVGQLEFFYDQSPDAMRSLCSALSFLTTALGNYLSSLIVTVVMFATTKGG 192
Query: 261 RIGWIPENLNRGHLD 305
+GWIP+NLN GHLD
Sbjct: 191 NVGWIPDNLNEGHLD 147
>gb|DR015799.1|DR015799 STRS1_5_E08.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_E08_A034 5', mRNA sequence
Length = 477
Score = 121 bits (258), Expect = 6e-027
Identities = 49/110 (44%), Positives = 62/110 (56%)
Frame = +3 / +1
Query: 51 ISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXXXXX 230
+SI WQ PQYF IG +EVF +VGQLEFF QAPD ++S SALS+T+++ GNY+S
Sbjct: 52 MSIFWQTPQYFFIGASEVFMYVGQLEFFNGQAPDGLKSFGSALSMTSISFGNYVSSLLVS 231
Query: 231 XXXXXXXRHGRIGWIPENLNRGHLDXXXXXXXXXXXXXXXXXXXIASWYK 380
R + GWIP NLNRGH+D A WY+
Sbjct: 232 IVMDITKRENQPGWIPGNLNRGHMDRFYYLLAALTAVDFVAYVMCARWYR 381
>gb|CR392439.1|CR392439 CR392439 RN Pinus pinaster cDNA clone RN32A04, mRNA sequence
Length = 377
Score = 117 bits (251), Expect = 5e-026
Identities = 47/106 (44%), Positives = 59/106 (55%)
Frame = +3 / +1
Query: 63 WQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXXXXXXXXX 242
WQ PQYF IG +EVF +VGQLEFF QAPD ++S SALS+T+++ GNY+S
Sbjct: 16 WQTPQYFFIGASEVFMYVGQLEFFNGQAPDGLKSFGSALSMTSISFGNYVSSLLVSIVMD 195
Query: 243 XXXRHGRIGWIPENLNRGHLDXXXXXXXXXXXXXXXXXXXIASWYK 380
R + GWIP NLNRGH+D A WY+
Sbjct: 196 ITKRENQPGWIPGNLNRGHMDRFYYLLAALTAVDFVAYVMCARWYR 333
>gb|CO366146.1|CO366146 RTK1_26_D08.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_26_D08_A029 3', mRNA sequence
Length = 820
Score = 107 bits (229), Expect = 6e-023
Identities = 46/88 (52%), Positives = 53/88 (60%)
Frame = +3 / +1
Query: 42 IVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXX 221
IVPIS W +PQ+ I G AE F VG LEFFYDQ P MRS A+S T ALG+YLS
Sbjct: 340 IVPISALWLVPQFCIAGLAEAFHTVGNLEFFYDQFPATMRSTAIAMSSCTAALGHYLSAT 519
Query: 222 XXXXXXXXXXRHGRIGWIPENLNRGHLD 305
R GR W+ +NLNRGHL+
Sbjct: 520 IVTVVHNTTGRDGRPDWLDDNLNRGHLE 603
>gb|CO366230.1|CO366230 RTK1_26_D08.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_26_D08_A029 5', mRNA sequence
Length = 825
Score = 107 bits (229), Expect = 6e-023
Identities = 46/88 (52%), Positives = 53/88 (60%)
Frame = +3 / +2
Query: 42 IVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXX 221
IVPIS W +PQ+ I G AE F VG LEFFYDQ P MRS A+S T ALG+YLS
Sbjct: 413 IVPISALWLVPQFCIAGLAEAFHTVGNLEFFYDQFPATMRSTAIAMSSCTAALGHYLSAT 592
Query: 222 XXXXXXXXXXRHGRIGWIPENLNRGHLD 305
R GR W+ +NLNRGHL+
Sbjct: 593 IVTVVHNTTGRDGRPDWLDDNLNRGHLE 676
>gb|DR015011.1|DR015011 STRS1_1_A09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_1_A09_A034 3', mRNA sequence
Length = 816
Score = 107 bits (229), Expect = 6e-023
Identities = 46/88 (52%), Positives = 53/88 (60%)
Frame = +3 / +3
Query: 42 IVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXX 221
IVPIS W +PQ+ I G AE F VG LEFFYDQ P MRS A+S T ALG+YLS
Sbjct: 339 IVPISALWLVPQFCIAGLAEAFHTVGNLEFFYDQFPATMRSTAIAMSSCTAALGHYLSAT 518
Query: 222 XXXXXXXXXXRHGRIGWIPENLNRGHLD 305
R GR W+ +NLNRGHL+
Sbjct: 519 IVTVVHNTTGRDGRPDWLDDNLNRGHLE 602
>gb|DR015090.1|DR015090 STRS1_1_A09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_1_A09_A034 5', mRNA sequence
Length = 810
Score = 107 bits (229), Expect = 6e-023
Identities = 46/88 (52%), Positives = 53/88 (60%)
Frame = +3 / +3
Query: 42 IVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXX 221
IVPIS W +PQ+ I G AE F VG LEFFYDQ P MRS A+S T ALG+YLS
Sbjct: 528 IVPISALWLVPQFCIAGLAEAFHTVGNLEFFYDQFPATMRSTAIAMSSCTAALGHYLSAT 707
Query: 222 XXXXXXXXXXRHGRIGWIPENLNRGHLD 305
R GR W+ +NLNRGHL+
Sbjct: 708 IVTVVHNTTGRDGRPDWLDDNLNRGHLE 791
>gb|DR015715.1|DR015715 STRS1_5_E06.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_E06_A034 3', mRNA sequence
Length = 787
Score = 107 bits (229), Expect = 6e-023
Identities = 46/88 (52%), Positives = 53/88 (60%)
Frame = +3 / +3
Query: 42 IVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXX 221
IVPIS W +PQ+ I G AE F VG LEFFYDQ P MRS A+S T ALG+YLS
Sbjct: 297 IVPISALWLVPQFCIAGLAEAFHTVGNLEFFYDQFPATMRSTAIAMSSCTAALGHYLSAT 476
Query: 222 XXXXXXXXXXRHGRIGWIPENLNRGHLD 305
R GR W+ +NLNRGHL+
Sbjct: 477 IVTVVHNTTGRDGRPDWLDDNLNRGHLE 560
>gb|DR015797.1|DR015797 STRS1_5_E06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_5_E06_A034 5', mRNA sequence
Length = 823
Score = 107 bits (229), Expect = 6e-023
Identities = 46/88 (52%), Positives = 53/88 (60%)
Frame = +3 / +2
Query: 42 IVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXX 221
IVPIS W +PQ+ I G AE F VG LEFFYDQ P MRS A+S T ALG+YLS
Sbjct: 461 IVPISALWLVPQFCIAGLAEAFHTVGNLEFFYDQFPATMRSTAIAMSSCTAALGHYLSAT 640
Query: 222 XXXXXXXXXXRHGRIGWIPENLNRGHLD 305
R GR W+ +NLNRGHL+
Sbjct: 641 IVTVVHNTTGRDGRPDWLDDNLNRGHLE 724
>gb|CF471128.1|CF471128 RTDS1_16_B03.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_16_B03_A015 5', mRNA sequence
Length = 721
Score = 107 bits (228), Expect = 8e-023
Identities = 41/88 (46%), Positives = 56/88 (63%)
Frame = +3 / +3
Query: 42 IVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXX 221
I+PIS+ W +PQY + G AE F +G LEFFYDQ+P++MRS +AL T+++ G+YLS
Sbjct: 228 IIPISVFWLVPQYALHGIAEAFMSIGHLEFFYDQSPESMRSTATALFWTSISAGSYLSTL 407
Query: 222 XXXXXXXXXXRHGRIGWIPENLNRGHLD 305
R G W+P NLNRG L+
Sbjct: 408 LVSTIHKVTSRDGHHNWLPTNLNRGRLE 491
>gb|DR020503.1|DR020503 STRS1_37_A06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_37_A06_A034 5', mRNA sequence
Length = 673
Score = 107 bits (228), Expect = 8e-023
Identities = 41/88 (46%), Positives = 56/88 (63%)
Frame = +3 / +3
Query: 42 IVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXX 221
I+PIS+ W +PQY + G AE F +G LEFFYDQ+P++MRS +AL T+++ G+YLS
Sbjct: 66 IIPISVFWLVPQYALHGIAEAFMSIGHLEFFYDQSPESMRSTATALFWTSISAGSYLSTL 245
Query: 222 XXXXXXXXXXRHGRIGWIPENLNRGHLD 305
R G W+P NLNRG L+
Sbjct: 246 LVSTIHKVTSRDGHQNWLPTNLNRGRLE 329
>gb|CF475656.1|CF475656 RTWW2_11_G01.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_11_G01_A021 5', mRNA sequence
Length = 692
Score = 105 bits (225), Expect = 2e-022
Identities = 42/91 (46%), Positives = 58/91 (63%)
Frame = +3 / +1
Query: 33 EDDIVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYL 212
E+ IVP+S+ W IPQ+ ++G E F +VGQLEFF QAP +M+SM + L L+T++LG +
Sbjct: 85 ENAIVPLSVYWLIPQFLLVGAGEAFAYVGQLEFFIKQAPVSMKSMSTGLFLSTLSLGFFW 264
Query: 213 SXXXXXXXXXXXXRHGRIGWIPENLNRGHLD 305
S G GW+P+NLNRG LD
Sbjct: 265 STLLVTLVNGLTGHGGSPGWLPDNLNRGRLD 357
>gb|DR089020.1|DR089020 RTAL1_6_C10.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_6_C10_A029 3', mRNA sequence
Length = 783
Score = 105 bits (225), Expect = 2e-022
Identities = 42/91 (46%), Positives = 58/91 (63%)
Frame = +3 / +2
Query: 33 EDDIVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYL 212
E+ IVP+S+ W IPQ+ ++G E F +VGQLEFF QAP +M+SM + L L+T++LG +
Sbjct: 23 ENAIVPLSVYWLIPQFLLVGAGEAFAYVGQLEFFIKQAPVSMKSMSTGLFLSTLSLGFFW 202
Query: 213 SXXXXXXXXXXXXRHGRIGWIPENLNRGHLD 305
S G GW+P+NLNRG LD
Sbjct: 203 STLLVTLVNGLTGHGGSPGWLPDNLNRGRLD 295
>gb|DR089108.1|DR089108 RTAL1_6_C10.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_6_C10_A029 5', mRNA sequence
Length = 794
Score = 105 bits (225), Expect = 2e-022
Identities = 42/91 (46%), Positives = 58/91 (63%)
Frame = +3 / +1
Query: 33 EDDIVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYL 212
E+ IVP+S+ W IPQ+ ++G E F +VGQLEFF QAP +M+SM + L L+T++LG +
Sbjct: 325 ENAIVPLSVYWLIPQFLLVGAGEAFAYVGQLEFFIKQAPVSMKSMSTGLFLSTLSLGFFW 504
Query: 213 SXXXXXXXXXXXXRHGRIGWIPENLNRGHLD 305
S G GW+P+NLNRG LD
Sbjct: 505 STLLVTLVNGLTGHGGSPGWLPDNLNRGRLD 597
>gb|CO164464.1|CO164464 FLD1_48_E04.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_48_E04_A029 3', mRNA sequence
Length = 825
Score = 105 bits (224), Expect = 3e-022
Identities = 43/101 (42%), Positives = 60/101 (59%)
Frame = +3 / +3
Query: 3 RAIARHGLYGEDDIVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALS 182
R I+ H L + VPISI W +PQY ++G A+VFT + LEFFYDQ+P M+S+ +AL
Sbjct: 78 RVISEHNLTSTMEPVPISIFWLLPQYVLLGVADVFTTIAMLEFFYDQSPGDMQSLGTALF 257
Query: 183 LTTVALGNYLSXXXXXXXXXXXXRHGRIGWIPENLNRGHLD 305
+++ +GN++S R G WI NLN HLD
Sbjct: 258 PSSLGIGNFISSFLLTTVANITGRRGHKSWILNNLNDSHLD 380
>gb|CO164538.1|CO164538 FLD1_48_E04.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_48_E04_A029 5', mRNA sequence
Length = 881
Score = 105 bits (224), Expect = 3e-022
Identities = 43/101 (42%), Positives = 60/101 (59%)
Frame = +3 / +3
Query: 3 RAIARHGLYGEDDIVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALS 182
R I+ H L + VPISI W +PQY ++G A+VFT + LEFFYDQ+P M+S+ +AL
Sbjct: 528 RVISEHNLTSTMEPVPISIFWLLPQYVLLGVADVFTTIAMLEFFYDQSPGDMQSLGTALF 707
Query: 183 LTTVALGNYLSXXXXXXXXXXXXRHGRIGWIPENLNRGHLD 305
+++ +GN++S R G WI NLN HLD
Sbjct: 708 PSSLGIGNFISSFLLTTVANITGRRGHKSWILNNLNDSHLD 830
>gb|CF385877.1|CF385877 RTDR1_6_B08.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_6_B08_A015 5', mRNA
sequence
Length = 738
Score = 105 bits (223), Expect = 4e-022
Identities = 45/88 (51%), Positives = 52/88 (59%)
Frame = +3 / -1
Query: 42 IVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXX 221
IVPIS W +PQ+ I G AE F VG LEFFYDQ P MRS A+S ALG+YLS
Sbjct: 459 IVPISALWLVPQFCIAGLAEAFHTVGNLEFFYDQFPATMRSTAIAMSSCQAALGHYLSAT 280
Query: 222 XXXXXXXXXXRHGRIGWIPENLNRGHLD 305
R GR W+ +NLNRGHL+
Sbjct: 279 IVTVVHNTTGRDGRPDWLDDNLNRGHLE 196
>gb|CF396615.1|CF396615 RTDS2_23_D12.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_23_D12_A021 3', mRNA sequence
Length = 544
Score = 105 bits (223), Expect = 4e-022
Identities = 45/88 (51%), Positives = 52/88 (59%)
Frame = +3 / +1
Query: 42 IVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXX 221
IVPIS W +PQ+ I G AE F VG LEFFYDQ P MRS A+S ALG+YLS
Sbjct: 67 IVPISALWLVPQFCIAGLAEAFHTVGNLEFFYDQFPATMRSTAIAMSSCQAALGHYLSAT 246
Query: 222 XXXXXXXXXXRHGRIGWIPENLNRGHLD 305
R GR W+ +NLNRGHL+
Sbjct: 247 IVTVVHNTTGRDGRPDWLDDNLNRGHLE 330
>gb|CO163019.1|CO163019 FLD1_39_A05.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_39_A05_A029 3', mRNA sequence
Length = 816
Score = 105 bits (223), Expect = 4e-022
Identities = 45/88 (51%), Positives = 52/88 (59%)
Frame = +3 / +3
Query: 42 IVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXX 221
IVPIS W +PQ+ I G AE F VG LEFFYDQ P MRS A+S ALG+YLS
Sbjct: 339 IVPISALWLVPQFCIAGLAEAFHTVGNLEFFYDQFPATMRSTAIAMSSCQAALGHYLSAT 518
Query: 222 XXXXXXXXXXRHGRIGWIPENLNRGHLD 305
R GR W+ +NLNRGHL+
Sbjct: 519 IVTVVHNTTGRDGRPDWLDDNLNRGHLE 602
>gb|DR010883.1|DR010883 HEAT1_2_A03.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_2_A03_A029 3', mRNA sequence
Length = 657
Score = 105 bits (223), Expect = 4e-022
Identities = 45/88 (51%), Positives = 52/88 (59%)
Frame = +3 / +2
Query: 42 IVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXX 221
IVPIS W +PQ+ I G AE F VG LEFFYDQ P MRS A+S ALG+YLS
Sbjct: 209 IVPISALWLVPQFCIAGLAEAFHTVGNLEFFYDQFPATMRSTAIAMSSCQAALGHYLSAT 388
Query: 222 XXXXXXXXXXRHGRIGWIPENLNRGHLD 305
R GR W+ +NLNRGHL+
Sbjct: 389 IVTVVHNTTGRDGRPDWLDDNLNRGHLE 472
>gb|DR023078.1|DR023078 STRS1_55_H02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_55_H02_A034 3', mRNA sequence
Length = 866
Score = 105 bits (223), Expect = 4e-022
Identities = 45/88 (51%), Positives = 52/88 (59%)
Frame = +3 / +3
Query: 42 IVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXX 221
IVPIS W +PQ+ I G AE F VG LEFFYDQ P MRS A+S ALG+YLS
Sbjct: 396 IVPISALWLVPQFCIAGLAEAFHTVGNLEFFYDQFPATMRSTAIAMSSCQAALGHYLSAT 575
Query: 222 XXXXXXXXXXRHGRIGWIPENLNRGHLD 305
R GR W+ +NLNRGHL+
Sbjct: 576 IVTVVHNTTGRDGRPDWLDDNLNRGHLE 659
>gb|DR096311.1|DR096311 STRR1_27_E04.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_27_E04_A033 3', mRNA sequence
Length = 768
Score = 105 bits (223), Expect = 4e-022
Identities = 45/88 (51%), Positives = 52/88 (59%)
Frame = +3 / +1
Query: 42 IVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXX 221
IVPIS W +PQ+ I G AE F VG LEFFYDQ P MRS A+S ALG+YLS
Sbjct: 295 IVPISALWLVPQFCIAGLAEAFHTVGNLEFFYDQFPATMRSTAIAMSSCQAALGHYLSAT 474
Query: 222 XXXXXXXXXXRHGRIGWIPENLNRGHLD 305
R GR W+ +NLNRGHL+
Sbjct: 475 IVTVVHNTTGRDGRPDWLDDNLNRGHLE 558
>gb|DR096391.1|DR096391 STRR1_27_E04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_27_E04_A033 5', mRNA sequence
Length = 797
Score = 105 bits (223), Expect = 4e-022
Identities = 45/88 (51%), Positives = 52/88 (59%)
Frame = +3 / +2
Query: 42 IVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXX 221
IVPIS W +PQ+ I G AE F VG LEFFYDQ P MRS A+S ALG+YLS
Sbjct: 458 IVPISALWLVPQFCIAGLAEAFHTVGNLEFFYDQFPATMRSTAIAMSSCQAALGHYLSAT 637
Query: 222 XXXXXXXXXXRHGRIGWIPENLNRGHLD 305
R GR W+ +NLNRGHL+
Sbjct: 638 IVTVVHNTTGRDGRPDWLDDNLNRGHLE 721
>gb|DR025340.1|DR025340 STRS1_71_C02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_71_C02_A034 3', mRNA sequence
Length = 784
Score = 103 bits (220), Expect = 1e-021
Identities = 45/88 (51%), Positives = 52/88 (59%)
Frame = +3 / +1
Query: 42 IVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXX 221
IVPIS W +PQ+ I G AE F VG LEFFY Q P MRS A+S T ALG+YLS
Sbjct: 295 IVPISALWLVPQFCIAGLAEAFHTVGNLEFFYVQFPATMRSTAIAMSSCTAALGHYLSAT 474
Query: 222 XXXXXXXXXXRHGRIGWIPENLNRGHLD 305
R GR W+ +NLNRGHL+
Sbjct: 475 IVTVVHNTTGRDGRPDWLDDNLNRGHLE 558
>gb|DR010959.1|DR010959 HEAT1_2_A03.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_2_A03_A029 5', mRNA sequence
Length = 552
Score = 100 bits (214), Expect = 7e-021
Identities = 44/87 (50%), Positives = 50/87 (57%)
Frame = +3 / +2
Query: 42 IVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXX 221
IVPIS W +PQ+ I G AE F G LEFFYDQ P MRS A+S ALG+YLS
Sbjct: 290 IVPISALWLVPQFCITGLAEAFHTDGNLEFFYDQFPATMRSTAIAMSSCQAALGHYLSAT 469
Query: 222 XXXXXXXXXXRHGRIGWIPENLNRGHL 302
R GR W+ +NLNRGHL
Sbjct: 470 IVTVVHNTTGRDGRPDWLDDNLNRGHL 550
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 277,188,699
Number of Sequences: 355925
Number of extensions: 3503516
Number of successful extensions: 40463
Number of sequences better than 1.0e-020: 39
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 8141035500
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)